Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 189 of 216
Found at i:58989040 original size:22 final size:22
Alignment explanation
Indices: 58988995--58989041 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
58988985 TTTTTGTAAA
*
58988995 AAGGATAAAGTGTTTAAAATGTT
1 AAGGATAAAGTG-TTAAAAAGTT
58989018 AAGGACTAAAGTG-TAAAAAGTT
1 AAGGA-TAAAGTGTTAAAAAGTT
58989040 AA
1 AA
58989042 AATATTAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 5 0.23
24 7 0.32
ACGTcount: A:0.49, C:0.02, G:0.21, T:0.28
Consensus pattern (22 bp):
AAGGATAAAGTGTTAAAAAGTT
Found at i:58995558 original size:40 final size:40
Alignment explanation
Indices: 58995503--58995637 Score: 198
Period size: 40 Copynumber: 3.4 Consensus size: 40
58995493 AGATCAACCG
*
58995503 AACACACCAGACAGAAGCTCATAAGAGGTAATCCAATTGA
1 AACACACCAGACAGAAGCTCATAAGAGGTAATCCAATCGA
* * * *
58995543 AACACACTAAACAGAAGCTCATAACAGGTAATCCAACCGA
1 AACACACCAGACAGAAGCTCATAAGAGGTAATCCAATCGA
* * *
58995583 AACACGCCAGATAGAAGCTCATAAGAGCTAATCCAATCGA
1 AACACACCAGACAGAAGCTCATAAGAGGTAATCCAATCGA
58995623 AACACACCAGACAGA
1 AACACACCAGACAGA
58995638 GAGTATAACA
Statistics
Matches: 81, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.46, C:0.26, G:0.16, T:0.13
Consensus pattern (40 bp):
AACACACCAGACAGAAGCTCATAAGAGGTAATCCAATCGA
Found at i:58999251 original size:14 final size:14
Alignment explanation
Indices: 58999234--58999262 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
58999224 TAGGTTTCGA
58999234 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
58999248 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
58999262 G
1 G
58999263 ATTAAATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:58999267 original size:21 final size:21
Alignment explanation
Indices: 58999225--58999267 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
58999215 GTAGTTAATT
* * *
58999225 AGGTTTCGAGTTTAGGGTTTA
1 AGGTTTAGAGTTTAAGGATTA
*
58999246 AGGTTTAGGGTTTAAGGATTA
1 AGGTTTAGAGTTTAAGGATTA
58999267 A
1 A
58999268 ATTGATAGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.40
Consensus pattern (21 bp):
AGGTTTAGAGTTTAAGGATTA
Found at i:59001824 original size:27 final size:27
Alignment explanation
Indices: 59001794--59001854 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
59001784 TCATCTCCTA
59001794 GGGGTATAACAGTCATTTTACCTTATG
1 GGGGTATAACAGTCATTTTACCTTATG
** *
59001821 GGGGTATTTCGGTCATTTTACCTTATG
1 GGGGTATAACAGTCATTTTACCTTATG
59001848 GGGGTAT
1 GGGGTAT
59001855 TTTGGTCATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.20, C:0.13, G:0.28, T:0.39
Consensus pattern (27 bp):
GGGGTATAACAGTCATTTTACCTTATG
Found at i:59001866 original size:26 final size:27
Alignment explanation
Indices: 59001805--59001873 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
59001795 GGGTATAACA
59001805 GTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCTTATGGGGGTATTTCG
*
59001832 GTCATTTTACCTTATGGGGGTATTTTG
1 GTCATTTTACCTTATGGGGGTATTTCG
*
59001859 GTCA-TTTACCCTATG
1 GTCATTTTACCTTATG
59001874 TCATTCTACC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 10 0.25
27 30 0.75
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.45
Consensus pattern (27 bp):
GTCATTTTACCTTATGGGGGTATTTCG
Found at i:59001877 original size:41 final size:42
Alignment explanation
Indices: 59001832--59001915 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 42
59001822 GGGTATTTCG
* * *
59001832 GTCATTTTACCTTATGGGGGTATTTTGGTCA-TTTACCCTAT
1 GTCATTCTACCCTATGGGGGTATTTGGGTCATTTTACCCTAT
*
59001873 GTCATTCTACCCTATGGGGGTATTTGGGTTATTTTACCCTAT
1 GTCATTCTACCCTATGGGGGTATTTGGGTCATTTTACCCTAT
59001915 G
1 G
59001916 AGGGTATTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
41 27 0.71
42 11 0.29
ACGTcount: A:0.17, C:0.18, G:0.21, T:0.44
Consensus pattern (42 bp):
GTCATTCTACCCTATGGGGGTATTTGGGTCATTTTACCCTAT
Found at i:59001878 original size:14 final size:15
Alignment explanation
Indices: 59001859--59001888 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
59001849 GGGTATTTTG
59001859 GTCATT-TACCCTAT
1 GTCATTCTACCCTAT
59001873 GTCATTCTACCCTAT
1 GTCATTCTACCCTAT
59001888 G
1 G
59001889 GGGGTATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.20, C:0.30, G:0.10, T:0.40
Consensus pattern (15 bp):
GTCATTCTACCCTAT
Found at i:59001920 original size:27 final size:27
Alignment explanation
Indices: 59001873--59002059 Score: 239
Period size: 27 Copynumber: 6.9 Consensus size: 27
59001863 TTTACCCTAT
* *
59001873 GTCATTCTACCCTATGGGGGTATTTGG
1 GTCATTCTACCCTATGAGGGTATTTCG
* * *
59001900 GTTATTTTACCCTATGAGGGTATTCCG
1 GTCATTCTACCCTATGAGGGTATTTCG
59001927 GTCATTCTACCCTATGAGGGTATTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
** * * *
59001954 ACCATTTTACCTTATGAGGGTATTTTG
1 GTCATTCTACCCTATGAGGGTATTTCG
*
59001981 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
*
59002008 GTCATTCTACCCTATGAGGGTATTTCA
1 GTCATTCTACCCTATGAGGGTATTTCG
* * *
59002035 GTCATTTTACCCTATGGGGGCATTT
1 GTCATTCTACCCTATGAGGGTATTT
59002060 TGGTGCAGGT
Statistics
Matches: 136, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (27 bp):
GTCATTCTACCCTATGAGGGTATTTCG
Found at i:59001921 original size:68 final size:69
Alignment explanation
Indices: 59001805--59001942 Score: 197
Period size: 68 Copynumber: 2.0 Consensus size: 69
59001795 GGGTATAACA
* * * * **
59001805 GTCATTTTACCTTATGGGGGTATTTCGGTCATTTTACCTTATGGGGGTATTTTGGTCATT-TACC
1 GTCATTCTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTCCGGTCATTCTACC
59001869 CTAT
66 CTAT
* *
59001873 GTCATTCTACCCTATGGGGGTATTTGGGTTATTTTACCCTATGAGGGTATTCCGGTCATTCTACC
1 GTCATTCTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTCCGGTCATTCTACC
59001938 CTAT
66 CTAT
59001942 G
1 G
59001943 AGGGTATTTC
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
68 52 0.85
69 9 0.15
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (69 bp):
GTCATTCTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTCCGGTCATTCTACC
CTAT
Found at i:59001936 original size:54 final size:54
Alignment explanation
Indices: 59001873--59002059 Score: 266
Period size: 54 Copynumber: 3.5 Consensus size: 54
59001863 TTTACCCTAT
* * *
59001873 GTCATTCTACCCTATGGGGGTATTTGGGTTATTTTACCCTATGAGGGTATTCCG
1 GTCATTCTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCG
* ** * *
59001927 GTCATTCTACCCTATGAGGGTATTTCGACCATTTTACCTTATGAGGGTATTTTG
1 GTCATTCTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCG
* *
59001981 GTCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGAGGGTATTTCA
1 GTCATTCTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCG
* *
59002035 GTCATTTTACCCTATGGGGGCATTT
1 GTCATTCTACCCTATGGGGGTATTT
59002060 TGGTGCAGGT
Statistics
Matches: 116, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 116 1.00
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (54 bp):
GTCATTCTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCG
Found at i:59002025 original size:81 final size:81
Alignment explanation
Indices: 59001875--59002063 Score: 272
Period size: 81 Copynumber: 2.3 Consensus size: 81
59001865 TACCCTATGT
* * * *
59001875 CATTCTACCCTATGGGGGTATTTGGGTTATTTTACCCTATGAGGGTATTCCGGTCATTCTACCCT
1 CATTTTACCCTATGGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTCCGGTCATTCTACCCT
59001940 ATGAGGGTATTTC-GAC
66 ATGAGGGTATTTCAG-C
* * * *
59001956 CATTTTACCTTATGAGGGTATTTTGGTCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCCT
1 CATTTTACCCTATGGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTCCGGTCATTCTACCCT
*
59002021 ATGAGGGTATTTCAGT
66 ATGAGGGTATTTCAGC
*
59002037 CATTTTACCCTATGGGGGCATTTTGGT
1 CATTTTACCCTATGGGGGTATTTTGGT
59002064 GCAGGTATCG
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 94 0.99
82 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (81 bp):
CATTTTACCCTATGGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTCCGGTCATTCTACCCT
ATGAGGGTATTTCAGC
Found at i:59006456 original size:154 final size:154
Alignment explanation
Indices: 59006271--59006581 Score: 613
Period size: 154 Copynumber: 2.0 Consensus size: 154
59006261 ATGTTATTTA
*
59006271 TGCCTATACATGCATTTCTCTCTGTCGAATTGATTGCAATGAGAATCAATAGTCTGATCAATTTA
1 TGCCTATACATGCATTTCTCTCTGTCAAATTGATTGCAATGAGAATCAATAGTCTGATCAATTTA
59006336 ATTATTATGGTGTTCTTCTTCTTTTTTCTGTGCCTTAGTTCTCTTTTATGCTATATAAGACATTT
66 ATTATTATGGTGTTCTTCTTCTTTTTTCTGTGCCTTAGTTCTCTTTTATGCTATATAAGACATTT
59006401 CTATATAACGTTAAACAACAGTAG
131 CTATATAACGTTAAACAACAGTAG
59006425 TGCCTATACATGCATTTCTCTCTGTCAAATTGATTGCAATGAGAATCAATAGTCTGATCAATTTA
1 TGCCTATACATGCATTTCTCTCTGTCAAATTGATTGCAATGAGAATCAATAGTCTGATCAATTTA
59006490 ATTATTATGGTGTTCTTCTTCTTTTTTCTGTGCCTTAGTTCTCTTTTATGCTATATAAGACATTT
66 ATTATTATGGTGTTCTTCTTCTTTTTTCTGTGCCTTAGTTCTCTTTTATGCTATATAAGACATTT
59006555 CTATATAACGTTAAACAACAGTAG
131 CTATATAACGTTAAACAACAGTAG
59006579 TGC
1 TGC
59006582 AGCATGTTTC
Statistics
Matches: 156, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 156 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.43
Consensus pattern (154 bp):
TGCCTATACATGCATTTCTCTCTGTCAAATTGATTGCAATGAGAATCAATAGTCTGATCAATTTA
ATTATTATGGTGTTCTTCTTCTTTTTTCTGTGCCTTAGTTCTCTTTTATGCTATATAAGACATTT
CTATATAACGTTAAACAACAGTAG
Found at i:59008905 original size:18 final size:17
Alignment explanation
Indices: 59008882--59008927 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
59008872 ATTTAAATTG
59008882 CGGTCGCGGTCGTGTTTT
1 CGGTCGCGGTCGTG-TTT
*
59008900 CGGTCGC-GTCGCGTTT
1 CGGTCGCGGTCGTGTTT
59008916 --GTCGCGGTCGTG
1 CGGTCGCGGTCGTG
59008928 GACATAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
16 3 0.12
17 5 0.20
18 7 0.28
ACGTcount: A:0.00, C:0.26, G:0.41, T:0.33
Consensus pattern (17 bp):
CGGTCGCGGTCGTGTTT
Found at i:59008915 original size:17 final size:18
Alignment explanation
Indices: 59008882--59008915 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
59008872 ATTTAAATTG
*
59008882 CGGTCGCGGTCGTGTTTT
1 CGGTCGCGGTCGCGTTTT
59008900 CGGTCGC-GTCGCGTTT
1 CGGTCGCGGTCGCGTTT
59008916 GTCGCGGTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.00, C:0.26, G:0.38, T:0.35
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:59010217 original size:54 final size:53
Alignment explanation
Indices: 59010069--59010275 Score: 152
Period size: 54 Copynumber: 3.8 Consensus size: 53
59010059 CACCCATTTT
* * *
59010069 AAAATTA-AAAAAA--TTGGGTGCTAAGACACTGATGGCCGGCACCCCAGTATC
1 AAAATTATAAAAAATTTTGGGTGCT-GGACACTGATGGCCGGCACCTCAGTACC
* * * * * *** **
59010120 -AAATTTTAAAAAAATTGGGGTACTGGAACATTGATGATAGGCACCTTTGTACC
1 AAAATTATAAAAAATTTTGGGTGCTGG-ACACTGATGGCCGGCACCTCAGTACC
* * *
59010173 AAAATTGTAAAAAATTTTGGGTGCTAGGACAATGATGGCCGGCACATCAGTACC
1 AAAATTATAAAAAATTTTGGGTGCT-GGACACTGATGGCCGGCACCTCAGTACC
* * *
59010227 ATATTTAAAAAATATATTTTGAGGTGCTGAGACACTGATGGCCGGCACC
1 AAAATTATAAAA-A-ATTTTG-GGTGCTG-GACACTGATGGCCGGCACC
59010276 CCAATACTAG
Statistics
Matches: 117, Mismatches: 29, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
50 5 0.04
51 6 0.05
52 1 0.01
53 25 0.21
54 47 0.40
55 3 0.03
56 7 0.06
57 23 0.20
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (53 bp):
AAAATTATAAAAAATTTTGGGTGCTGGACACTGATGGCCGGCACCTCAGTACC
Found at i:59010290 original size:57 final size:56
Alignment explanation
Indices: 59010186--59010295 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 56
59010176 ATTGTAAAAA
* * *
59010186 ATTTTGGGTGCTAGGACAATGATGGCCGGCACATCAGTACCATATTTAAAAAATAT
1 ATTTTGGGTGCTAGGACAATGATGGCCGGCACACCAATACCAGATTTAAAAAATAT
* * *
59010242 ATTTTGAGGTGCT-GAGACACTGATGGCCGGCACCCCAATACTAGATTTAAAAAA
1 ATTTTG-GGTGCTAG-GACAATGATGGCCGGCACACCAATACCAGATTTAAAAAA
59010296 AAATTAATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 7 0.15
57 39 0.85
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (56 bp):
ATTTTGGGTGCTAGGACAATGATGGCCGGCACACCAATACCAGATTTAAAAAATAT
Found at i:59029345 original size:75 final size:75
Alignment explanation
Indices: 59029254--59029403 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
59029244 TTTATACATA
59029254 GATGAATGCATGGTATATCATTAGAATTGATTTAATTCTAAAAATTTTAAATAAGTTATATTGTA
1 GATGAATGCATGGTATATCATTAGAATTGATTTAATTCTAAAAATTTTAAATAAGTTATATTGTA
59029319 ATCGAATGAT
66 ATCGAATGAT
59029329 GATGAATGCATGGTATATCATTAGAATTGATTTAATTCTAAAAATTTTAAATAAGTTATATTGTA
1 GATGAATGCATGGTATATCATTAGAATTGATTTAATTCTAAAAATTTTAAATAAGTTATATTGTA
59029394 ATCGAATGAT
66 ATCGAATGAT
59029404 ACAAGCGAGT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (75 bp):
GATGAATGCATGGTATATCATTAGAATTGATTTAATTCTAAAAATTTTAAATAAGTTATATTGTA
ATCGAATGAT
Found at i:59032058 original size:37 final size:36
Alignment explanation
Indices: 59031987--59032076 Score: 94
Period size: 37 Copynumber: 2.4 Consensus size: 36
59031977 ACAAAAAATG
* *
59031987 ATAAAAAAATAAAATTCAATAAAATTTATTAAATTTT
1 ATAAAAACATAAAAATCAATAAAATTTA-TAAATTTT
59032024 AATAAAAATCATAAAAATCAA-AAAATTGTA-AAATTTT
1 -ATAAAAA-CATAAAAATCAATAAAATT-TATAAATTTT
59032061 ATAAAGAAACATAAAA
1 AT-AA-AAACATAAAA
59032077 TATATAGAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
36 2 0.04
37 16 0.35
38 16 0.35
39 12 0.26
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (36 bp):
ATAAAAACATAAAAATCAATAAAATTTATAAATTTT
Found at i:59032411 original size:20 final size:20
Alignment explanation
Indices: 59032386--59032434 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
59032376 GCTGACAAAA
59032386 CAGTCACTCTGATTTCAATT
1 CAGTCACTCTGATTTCAATT
59032406 CAGTCACTCTGATTTCAATT
1 CAGTCACTCTGATTTCAATT
59032426 CAGTCACTC
1 CAGTCACTC
59032435 AACTTTCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.37
Consensus pattern (20 bp):
CAGTCACTCTGATTTCAATT
Found at i:59032441 original size:20 final size:20
Alignment explanation
Indices: 59032386--59032443 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
59032376 GCTGACAAAA
*
59032386 CAGTCACTCTGATTTCAATT
1 CAGTCACTCTAATTTCAATT
*
59032406 CAGTCACTCTGATTTCAATT
1 CAGTCACTCTAATTTCAATT
59032426 CAGTCACTC-AACTTTCAA
1 CAGTCACTCTAA-TTTCAA
59032444 AAAATAACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 1 0.03
20 35 0.97
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.36
Consensus pattern (20 bp):
CAGTCACTCTAATTTCAATT
Found at i:59032461 original size:30 final size:32
Alignment explanation
Indices: 59032425--59032495 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
59032415 TGATTTCAAT
59032425 TCAGTCACTCAAC-TT-TCAAAAAATAACAAA
1 TCAGTCACTCAACGTTATCAAAAAATAACAAA
* *
59032455 TCAGTCACT-AACGTTATCAAAAAGTGACAAA
1 TCAGTCACTCAACGTTATCAAAAAATAACAAA
59032486 TCAGTCACTC
1 TCAGTCACTC
59032496 GTTAACATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 3 0.08
30 11 0.31
31 22 0.61
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (32 bp):
TCAGTCACTCAACGTTATCAAAAAATAACAAA
Found at i:59032876 original size:29 final size:29
Alignment explanation
Indices: 59032844--59032899 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
59032834 CGTCTTGTTA
* * *
59032844 ATAAATGACCTAATATTTTTATTTTTCAC
1 ATAAATGACCCAATATGTTTATATTTCAC
*
59032873 ATAAATGGCCCAATATGTTTATATTTC
1 ATAAATGACCCAATATGTTTATATTTC
59032900 TTCTTCCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (29 bp):
ATAAATGACCCAATATGTTTATATTTCAC
Found at i:59038483 original size:18 final size:18
Alignment explanation
Indices: 59038448--59038487 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
59038438 AGGAAATTTA
*
59038448 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
59038466 TTTTGATGTATTATATATAT
1 TTTTGATGT-TTATA-ATAT
59038486 TT
1 TT
59038488 AAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:59038503 original size:11 final size:11
Alignment explanation
Indices: 59038487--59038517 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
59038477 TATATATATT
59038487 TAAAAATTATA
1 TAAAAATTATA
*
59038498 TAAAAATAATA
1 TAAAAATTATA
59038509 TAAAAATTA
1 TAAAAATTA
59038518 ATACGGGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:59039993 original size:31 final size:31
Alignment explanation
Indices: 59039927--59040003 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 31
59039917 ATACATAAAC
* * * *
59039927 TTCAATTACACACCTGAAACTTGAATTGTGG
1 TTCAAATATACACATGAAACTTGAATTGTGA
* *
59039958 TTCAAATATATACATGAAACATTG-ATTTTGA
1 TTCAAATATACACATGAAAC-TTGAATTGTGA
*
59039989 TTCAATTATACACAT
1 TTCAAATATACACAT
59040004 TTAAAAAATG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 34 0.92
32 3 0.08
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (31 bp):
TTCAAATATACACATGAAACTTGAATTGTGA
Found at i:59062635 original size:30 final size:30
Alignment explanation
Indices: 59062599--59062663 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
59062589 CCAAAGTGAT
* *
59062599 AACTAAATTTTACTTTGTCTTCATTACCAA
1 AACTAAATTATACTTCGTCTTCATTACCAA
*
59062629 AACTAAATTATACTTCGTCTTTATTACCAA
1 AACTAAATTATACTTCGTCTTCATTACCAA
59062659 AACTA
1 AACTA
59062664 CCCTAATCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.40
Consensus pattern (30 bp):
AACTAAATTATACTTCGTCTTCATTACCAA
Found at i:59070117 original size:16 final size:16
Alignment explanation
Indices: 59070095--59070141 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
59070085 TTATTTTGAA
59070095 ATTAAAAGTATAAAATT
1 ATTAAAA-TATAAAATT
59070112 -TTAAAATATATAAATT
1 ATTAAAATATA-AAATT
*
59070128 AATAAAAATATAAA
1 -ATTAAAATATAAA
59070142 TCTTTATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.15
16 11 0.42
17 2 0.08
18 9 0.35
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (16 bp):
ATTAAAATATAAAATT
Found at i:59070868 original size:45 final size:45
Alignment explanation
Indices: 59070815--59071464 Score: 877
Period size: 45 Copynumber: 14.4 Consensus size: 45
59070805 TCCTATACTA
* * * *
59070815 GCAGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTATATAG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * * *
59070860 GTAGCGAAGTAGATCAAAGATAGCAGATCTTATCTTCCTATATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * * *
59070905 GTAGCGAAGTAGATTGAAGAAAACAGATCTTGTCTTCCTGTATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* *
59070950 GCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * *
59070995 GTAGCGAAGTAGATCGAAGATAGCAGATCTCGTCTTCCTGTACTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* *
59071040 GCAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * *
59071085 GTAGCGAAGTAGATCGAAGATAGCAGATCTCGTCTTCCTGTACTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * *
59071130 GCAACGAAGTAGATCGAAGATAGCAGATTTTGTCTTCCTGTACTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
*
59071175 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTA
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* *
59071220 GCAGCGAAGTAGATCGAAGGTAGCAGATCTTGTCTTCCTATATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * *
59071265 GCAGCGAAGTAGATCGAAGGTAGCAGATTTTGTCTTCCTATATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* *
59071310 GTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * * ** *
59071355 GCAGCGAAGTAGATCAAAGATAACGGATCTCATCTTCTTGTATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
** * * * * *
59071400 ATAGCGAAGTAGATCGAAAACAACAGATCTTATTTTCCTGTATTG
1 GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
*
59071445 GCAGCAAAGTAGATCGAAGA
1 GCAGCGAAGTAGATCGAAGA
59071465 CAGAAGTAAC
Statistics
Matches: 536, Mismatches: 69, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 536 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (45 bp):
GCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTG
Found at i:59071672 original size:44 final size:44
Alignment explanation
Indices: 59071567--59071676 Score: 148
Period size: 44 Copynumber: 2.5 Consensus size: 44
59071557 ATCCAGTCTC
* * * * * * *
59071567 ATCTCCCCGAGGTTGCAATAGAGCAGATTGAATAAGCCAATCTT
1 ATCTCCCTGAGGTTGCAGTGGAACAGATTGAAGAAACCAATCCT
59071611 ATCTCCCTGAGGTTGCAGTGGAACAGATTGAAGAAACCAATCCT
1 ATCTCCCTGAGGTTGCAGTGGAACAGATTGAAGAAACCAATCCT
*
59071655 ATCTCCCTGAAGTTGCAGTGGA
1 ATCTCCCTGAGGTTGCAGTGGA
59071677 GTGGATCAGA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (44 bp):
ATCTCCCTGAGGTTGCAGTGGAACAGATTGAAGAAACCAATCCT
Found at i:59072264 original size:19 final size:20
Alignment explanation
Indices: 59072222--59072269 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
59072212 TTCAAGGATG
59072222 TGCAATCTTAGATATGATATA
1 TGCAATCTTAGATATGA-ATA
59072243 TGCAATCTTAGATATG-ATA
1 TGCAATCTTAGATATGAATA
59072262 TGCAATCT
1 TGCAATCT
59072270 CAGAAGATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 11 0.41
21 16 0.59
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (20 bp):
TGCAATCTTAGATATGAATA
Found at i:59072854 original size:30 final size:31
Alignment explanation
Indices: 59072799--59072857 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
59072789 AATTTCAAAT
* *
59072799 TTTTTGTTATATATGCATGTATACATACATAC
1 TTTTTGTAATATATACA-GTATACATACATAC
59072831 TTTTTGTAATATATACA-TATACATACA
1 TTTTTGTAATATATACAGTATACATACA
59072858 CATTTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 10 0.40
32 15 0.60
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.46
Consensus pattern (31 bp):
TTTTTGTAATATATACAGTATACATACATAC
Found at i:59072865 original size:30 final size:31
Alignment explanation
Indices: 59072797--59072865 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 31
59072787 TAAATTTCAA
* * *
59072797 ATTTTTTGTTATATATGCATGTATACATACAT
1 ATTTTTTGTAATATATACA-GTATACATACAC
*
59072829 ACTTTTTGTAATATATACA-TATACATACAC
1 ATTTTTTGTAATATATACAGTATACATACAC
59072859 ATTTTTT
1 ATTTTTT
59072866 AATTTTTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 16 0.50
32 16 0.50
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (31 bp):
ATTTTTTGTAATATATACAGTATACATACAC
Found at i:59073022 original size:23 final size:22
Alignment explanation
Indices: 59072995--59073038 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
59072985 ATAATTCACA
*
59072995 TACATATATATTTTTCTTATATG
1 TACATATATA-TATTCTTATATG
59073018 TACATATATATATTCTTATAT
1 TACATATATATATTCTTATAT
59073039 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (22 bp):
TACATATATATATTCTTATATG
Found at i:59073097 original size:4 final size:4
Alignment explanation
Indices: 59073088--59073115 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
59073078 CTTTACTTGA
59073088 TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT
59073116 CACATGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:59077235 original size:26 final size:26
Alignment explanation
Indices: 59077206--59077256 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
59077196 TGAGTAGGCC
*
59077206 CATTTCACAGCTCGTGTGAGCATATT
1 CATTTCACAACTCGTGTGAGCATATT
*
59077232 CATTTTACAACTCGTGTGAGCATAT
1 CATTTCACAACTCGTGTGAGCATAT
59077257 ATGTATAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (26 bp):
CATTTCACAACTCGTGTGAGCATATT
Found at i:59087921 original size:58 final size:58
Alignment explanation
Indices: 59087828--59087974 Score: 197
Period size: 58 Copynumber: 2.5 Consensus size: 58
59087818 AAATTGTCAA
*
59087828 GTGCCACATGGCCGTGTGGTAGACTATGTGCGCCACACGGCCATGTGTTAAGCCTTGT
1 GTGCCACACGGCCGTGTGGTAGACTATGTGCGCCACACGGCCATGTGTTAAGCCTTGT
* * * *
59087886 GTGCCACACGGCCGTGTGTTAAGCCT-TGTGTGCCACACGGCCGTGTGTTAAGCCTTGT
1 GTGCCACACGGCCGTGTGGT-AGACTATGTGCGCCACACGGCCATGTGTTAAGCCTTGT
* * * *
59087944 GCGCCACACAGCCGTGTGGTAGGCCATGTGC
1 GTGCCACACGGCCGTGTGGTAGACTATGTGC
59087975 CAGTCCGTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
57 3 0.04
58 69 0.91
59 4 0.05
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (58 bp):
GTGCCACACGGCCGTGTGGTAGACTATGTGCGCCACACGGCCATGTGTTAAGCCTTGT
Found at i:59087974 original size:29 final size:29
Alignment explanation
Indices: 59087830--59087961 Score: 185
Period size: 29 Copynumber: 4.6 Consensus size: 29
59087820 ATTGTCAAGT
* * *
59087830 GCCACATGGCCGTGTGGT-AGACTATGTGC
1 GCCACACGGCCGTGTGTTAAGCCT-TGTGC
* *
59087859 GCCACACGGCCATGTGTTAAGCCTTGTGT
1 GCCACACGGCCGTGTGTTAAGCCTTGTGC
*
59087888 GCCACACGGCCGTGTGTTAAGCCTTGTGT
1 GCCACACGGCCGTGTGTTAAGCCTTGTGC
59087917 GCCACACGGCCGTGTGTTAAGCCTTGTGC
1 GCCACACGGCCGTGTGTTAAGCCTTGTGC
*
59087946 GCCACACAGCCGTGTG
1 GCCACACGGCCGTGTG
59087962 GTAGGCCATG
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
29 90 0.96
30 4 0.04
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (29 bp):
GCCACACGGCCGTGTGTTAAGCCTTGTGC
Found at i:59088062 original size:60 final size:59
Alignment explanation
Indices: 59087953--59088068 Score: 153
Period size: 60 Copynumber: 1.9 Consensus size: 59
59087943 TGCGCCACAC
* * * * *
59087953 AGCCGTGTGGTAGGCCATGTGCCAGTCCGTGTGGAGCACACAGCTGTGTGTAATTAAGT
1 AGCCGTGTGGTAGACCATGTGCCAGGCCATGTGGAGCACACAGCCGTGTGAAATTAAGT
*
59088012 AGCCTGTGTGGTAGACCGTGTGCCAGGCCATGTGGAGCACAC-GACCGTGTGAAATTA
1 AGCC-GTGTGGTAGACCATGTGCCAGGCCATGTGGAGCACACAG-CCGTGTGAAATTA
59088069 CATGGATCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 5 0.10
60 44 0.90
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.23
Consensus pattern (59 bp):
AGCCGTGTGGTAGACCATGTGCCAGGCCATGTGGAGCACACAGCCGTGTGAAATTAAGT
Found at i:59089100 original size:17 final size:18
Alignment explanation
Indices: 59089075--59089108 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
59089065 AGTTTTCGGT
*
59089075 CTTGGTTTT-GTTTTGGG
1 CTTGATTTTGGTTTTGGG
59089092 CTTGATTTTGGTTTTGG
1 CTTGATTTTGGTTTTGG
59089109 TTTTTTATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.03, C:0.06, G:0.32, T:0.59
Consensus pattern (18 bp):
CTTGATTTTGGTTTTGGG
Found at i:59090890 original size:16 final size:16
Alignment explanation
Indices: 59090865--59090898 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
59090855 TGACTATATA
*
59090865 TAAAATTTTAATAAAT
1 TAAAAATTTAATAAAT
*
59090881 TAAAAATTTATTAAAT
1 TAAAAATTTAATAAAT
59090897 TA
1 TA
59090899 TTAAATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAAAATTTAATAAAT
Found at i:59090919 original size:24 final size:25
Alignment explanation
Indices: 59090876--59090925 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
59090866 AAAATTTTAA
*
59090876 TAAATTAAAAATTTATTAAAT-TAT
1 TAAATTAAAAATATATTAAATATAT
59090900 TAAATTAAAAATA-ATATAAATATAT
1 TAAATTAAAAATATAT-TAAATATAT
59090925 T
1 T
59090926 TTTCAGAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 2 0.09
24 17 0.74
25 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
TAAATTAAAAATATATTAAATATAT
Found at i:59095782 original size:10 final size:10
Alignment explanation
Indices: 59095767--59095793 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
59095757 TAACAAGCAA
59095767 GTAATTGGGT
1 GTAATTGGGT
59095777 GTAATTGGGT
1 GTAATTGGGT
59095787 GTAATTG
1 GTAATTG
59095794 TAAGACACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (10 bp):
GTAATTGGGT
Found at i:59097286 original size:38 final size:38
Alignment explanation
Indices: 59097207--59097321 Score: 131
Period size: 38 Copynumber: 3.0 Consensus size: 38
59097197 TGCTTACTGC
* ** *
59097207 TACTGTTGAACCGAATACATGTTAAGCATACCTACTAT
1 TACTGTTGAACTGAATACATGTTAAGCATGTCTAATAT
* * * *
59097245 TACTGTTAAACTGAATGCATGATAAGCATGTCTAATGT
1 TACTGTTGAACTGAATACATGTTAAGCATGTCTAATAT
* * *
59097283 TACTGTTGAACTAAAAACATGTTAAGCATGTCTACTAT
1 TACTGTTGAACTGAATACATGTTAAGCATGTCTAATAT
59097321 T
1 T
59097322 TTTACAAAAT
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (38 bp):
TACTGTTGAACTGAATACATGTTAAGCATGTCTAATAT
Found at i:59097604 original size:20 final size:21
Alignment explanation
Indices: 59097579--59097619 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
59097569 CAATTTGTAC
*
59097579 TACTGGTAGTT-ATCTACAAA
1 TACTGGTAGTTCATCCACAAA
*
59097599 TACTGGTGGTTCATCCACAAA
1 TACTGGTAGTTCATCCACAAA
59097620 CTGGAGTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (21 bp):
TACTGGTAGTTCATCCACAAA
Found at i:59102132 original size:14 final size:14
Alignment explanation
Indices: 59102096--59102146 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
59102086 ATAACATTAA
*
59102096 AAAATTATAATAA-T
1 AAAA-TATAAAAATT
59102110 AAAAT-TAAAAATT
1 AAAATATAAAAATT
59102123 AAAATATAAAAATT
1 AAAATATAAAAATT
* *
59102137 TAAATTTAAA
1 AAAATATAAA
59102147 TTTAAATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 5 0.16
13 7 0.22
14 20 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:59102136 original size:21 final size:21
Alignment explanation
Indices: 59102084--59102133 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
59102074 TTGGACCGGC
* *
59102084 TAATAACATTAAAAAATTATAA
1 TAATAAAATT-AAAAATTAAAA
59102106 TAATAAAATTAAAAATTAAAA
1 TAATAAAATTAAAAATTAAAA
59102127 T-ATAAAA
1 TAATAAAA
59102134 ATTTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 6 0.23
21 11 0.42
22 9 0.35
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (21 bp):
TAATAAAATTAAAAATTAAAA
Found at i:59102155 original size:6 final size:6
Alignment explanation
Indices: 59102132--59102156 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
59102122 TAAAATATAA
59102132 AAATTT AAATTT AAATTT AAATTT A
1 AAATTT AAATTT AAATTT AAATTT A
59102157 GGCATAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AAATTT
Found at i:59103074 original size:30 final size:31
Alignment explanation
Indices: 59103038--59103101 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 31
59103028 TCCATATTTA
*
59103038 TGGAAAGTTAAAGATATGGGTATCAA-ATAT
1 TGGAAAGTCAAAGATATGGGTATCAAGATAT
59103068 TGGAAAGTCAAAGATATGGGTATCAAGATAT
1 TGGAAAGTCAAAGATATGGGTATCAAGATAT
59103099 TGG
1 TGG
59103102 CATAAGAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.78
31 7 0.22
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.28
Consensus pattern (31 bp):
TGGAAAGTCAAAGATATGGGTATCAAGATAT
Found at i:59103093 original size:15 final size:15
Alignment explanation
Indices: 59103047--59103098 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
59103037 ATGGAAAGTT
59103047 AAAGATATGGGTATC
1 AAAGATATGGGTATC
* **
59103062 AAATAT-TGGAAAGTC
1 AAAGATATGGGTA-TC
59103077 AAAGATATGGGTATC
1 AAAGATATGGGTATC
59103092 -AAGATAT
1 AAAGATAT
59103099 TGGCATAAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 11 0.38
15 14 0.48
16 4 0.14
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (15 bp):
AAAGATATGGGTATC
Found at i:59103097 original size:14 final size:14
Alignment explanation
Indices: 59103048--59103098 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
59103038 TGGAAAGTTA
59103048 AAGATATGGGTATC
1 AAGATATGGGTATC
**
59103062 AA-ATATTGGAAAGTC
1 AAGATA-TGGGTA-TC
59103077 AAAGATATGGGTATC
1 -AAGATATGGGTATC
59103092 AAGATAT
1 AAGATAT
59103099 TGGCATAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 3 0.10
14 13 0.45
15 4 0.14
16 6 0.21
17 3 0.10
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (14 bp):
AAGATATGGGTATC
Found at i:59103253 original size:2 final size:2
Alignment explanation
Indices: 59103246--59103270 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
59103236 AAGGCATTGT
59103246 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
59103271 TTGTAAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:59121842 original size:126 final size:125
Alignment explanation
Indices: 59121594--59122160 Score: 751
Period size: 126 Copynumber: 4.5 Consensus size: 125
59121584 GATAAAATCA
* * * * * *
59121594 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
59121659 AGGTCCTAGAAAAATAATTTTGACTTAACGTTTTTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
* * * * * * *
59121719 AAGCAGGATGTTTTGTAATAAGAATTTGTGAAATCGCGCCCTCGTGGACGTGTTTTTACTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
59121784 TGGTCCTGGAAGAAATAATTTCGAGTTGACATTTTTGAACAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGACTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
*
59121845 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
59121910 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTATAAAA-AACGCTTC
* * * * *
59121971 AAGCAGCATGCTATT-TGAGAAGAATTTGTGAAATCGCTCTCTCGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCT-TTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* *
59122035 TTGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
* * *
59122095 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGGCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
59122160 A
66 A
59122161 ACATGTTTGG
Statistics
Matches: 383, Mismatches: 55, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
123 2 0.01
124 62 0.16
125 101 0.26
126 216 0.56
127 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (125 bp):
AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
Found at i:59122053 original size:251 final size:249
Alignment explanation
Indices: 59121594--59122160 Score: 825
Period size: 251 Copynumber: 2.3 Consensus size: 249
59121584 GATAAAATCA
* * * * *
59121594 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * *
59121659 AGGTCCTAGAAAAATAATTTTGACTTAACGTTTTTGAGCAAATAGTTTAAAAAACGCTTCAAGCA
66 AGGTCCTAGAAAAATAATTTTGACTTAACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
* * * *
59121724 GGATGTTTTGTAATAAGAATTTGTGAAATCGCGCCCTCGTGGACGTGTTTTTACTACAGTTGGTC
131 GCATGTTTTG-AAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTACTACAGTTGGTC
* *
59121789 CTGGAAGAAATAATTTCGAGTTGACATTTTTGAACAAATAGTTTAAAAAACGCTTC
195 CTGGAAGAAATAATTTCGACTTGACATTTTTGAACAAATAGTAT-AAAAACGCTTC
59121845 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
59121910 AGGTCCT-GAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGCAAG
66 AGGTCCTAG-AAAAATAATTTTGACTTAACGTTTCTGAGCAAATAGTATAAAA-AACGCTGCAAG
* * *
59121974 CAGCATGCTATTTG-AGAAGAATTTGTGAAATCGCTCTCTCGTGGACGCGCTTTTGCTACAGTTG
129 CAGCATG-T-TTTGAAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTACTACAGTTG
* * *
59122038 GTCCTGGAA-AAATAATTTCGACTTGACGTTTTTGAGCAAATAGTATAAAATCGCTTC
192 GTCCTGGAAGAAATAATTTCGACTTGACATTTTTGAACAAATAGTATAAAAACGCTTC
* * * *
59122095 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGGCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
59122160 A
66 A
59122161 ACATGTTTGG
Statistics
Matches: 286, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
250 73 0.26
251 139 0.49
252 69 0.24
253 1 0.00
254 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (249 bp):
AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTAGAAAAATAATTTTGACTTAACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
GCATGTTTTGAAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTACTACAGTTGGTCC
TGGAAGAAATAATTTCGACTTGACATTTTTGAACAAATAGTATAAAAACGCTTC
Found at i:59124947 original size:21 final size:21
Alignment explanation
Indices: 59124923--59124964 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
59124913 GAAATATTAG
*
59124923 TTATATAC-ATAATACTGAATA
1 TTATATACTA-AATACTAAATA
59124944 TTATATACTAAATACTAAATA
1 TTATATACTAAATACTAAATA
59124965 CCAATCGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (21 bp):
TTATATACTAAATACTAAATA
Found at i:59125171 original size:20 final size:20
Alignment explanation
Indices: 59125134--59125171 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
59125124 TTTATTTTTA
*
59125134 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
59125154 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
59125172 TATCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:59126154 original size:51 final size:51
Alignment explanation
Indices: 59126110--59126207 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
59126100 AATTATTTAA
59126110 AAATAGGGATTTAAGAAAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTAAGAAAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * * * *
59126161 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAAAAATTTAGAAGGAACTTGAGAGCAAATTGA
59126208 GAGGAAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.23, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAAAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:59126194 original size:22 final size:22
Alignment explanation
Indices: 59126169--59126243 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
59126159 ATAAATATGG
59126169 ATTTGAGAGAAATTTTGAAGGA
1 ATTTGAGAGAAATTTTGAAGGA
59126191 ATTTGAGAGCAAA--TTGAGAGGAA
1 ATTTGAGAG-AAATTTTGA-AGG-A
** *
59126214 ATTT-AGAAGAAATTGGGAAGAA
1 ATTTGAG-AGAAATTTTGAAGGA
59126236 ATTTGAGA
1 ATTTGAGA
59126244 TAGGATTAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
21 4 0.09
22 23 0.53
23 14 0.33
24 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.28, T:0.27
Consensus pattern (22 bp):
ATTTGAGAGAAATTTTGAAGGA
Found at i:59126205 original size:12 final size:11
Alignment explanation
Indices: 59126169--59126243 Score: 59
Period size: 11 Copynumber: 6.7 Consensus size: 11
59126159 ATAAATATGG
59126169 ATTTGAGAGAA
1 ATTTGAGAGAA
*
59126180 ATTTTGA-AGGA
1 A-TTTGAGAGAA
59126191 ATTTGAGAGCAA
1 ATTTGAGAG-AA
59126203 A-TTGAGAGGAA
1 ATTTGAGA-GAA
59126214 ATTT-AGAAGAA
1 ATTTGAG-AGAA
*
59126225 A-TTGGGAAGAA
1 ATTTGAG-AGAA
59126236 ATTTGAGA
1 ATTTGAGA
59126244 TAGGATTAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
10 7 0.13
11 30 0.58
12 15 0.29
ACGTcount: A:0.44, C:0.01, G:0.28, T:0.27
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:59127588 original size:15 final size:15
Alignment explanation
Indices: 59127568--59127623 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
59127558 ATTTACTAAA
*
59127568 ATTATAATATATAAT
1 ATTATAAAATATAAT
59127583 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
59127596 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
59127609 ATTATTAAATATAAT
1 ATTATAAAATATAAT
59127624 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:59127618 original size:26 final size:25
Alignment explanation
Indices: 59127578--59127640 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
59127568 ATTATAATAT
59127578 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
59127603 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
59127630 AAAATA-TATAA
1 ATAATATTATAA
59127641 TTTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:59127636 original size:59 final size:59
Alignment explanation
Indices: 59127573--59127771 Score: 205
Period size: 59 Copynumber: 3.3 Consensus size: 59
59127563 CTAAAATTAT
59127573 AATATATAATATT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAAT-TTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
* * * * * *
59127632 AATATATAATTTAATAAAAT-T--CTTAGTATTAAATATTCTT--ATATGAATTT-ACTAA
1 AATATATAATTTAATAAAATATAATTTA-AAATAATTATTATTAAATAT-AATTTAACAAA
*
59127687 AATCATAATATATTATACTATAAAATATAATTTAAAATAATTATGATTAAATATAATTTAACAAA
1 AAT-AT-ATA-ATT-TA--ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
59127752 AATATATAATTTAATAAAAT
1 AATATATAATTTAATAAAAT
59127772 TCTTAGTATT
Statistics
Matches: 112, Mismatches: 13, Indels: 30
0.72 0.08 0.19
Matches are distributed among these distances:
55 11 0.10
56 10 0.09
57 13 0.12
58 6 0.05
59 26 0.23
61 9 0.08
62 4 0.04
63 12 0.11
64 10 0.09
65 11 0.10
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (59 bp):
AATATATAATTTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
Found at i:59127686 original size:120 final size:120
Alignment explanation
Indices: 59127551--59127790 Score: 444
Period size: 120 Copynumber: 2.0 Consensus size: 120
59127541 TTTAATAGAA
* * *
59127551 TATATGAATTTACTAAAATTATAATATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATGATTA
59127616 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
*
59127671 TATATGAATTTACTAAAATCATAATATATTATACTATAAAATATAATTTAAAATAATTATGATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATGATTA
59127736 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
59127791 AATGATTGTA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 116 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (120 bp):
TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATGATTA
AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
Found at i:59138858 original size:7 final size:7
Alignment explanation
Indices: 59138846--59138870 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
59138836 TGAGTTTATT
59138846 AGAACCC
1 AGAACCC
59138853 AGAACCC
1 AGAACCC
59138860 AGAACCC
1 AGAACCC
59138867 AGAA
1 AGAA
59138871 TTAGTGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.36, G:0.16, T:0.00
Consensus pattern (7 bp):
AGAACCC
Found at i:59140825 original size:53 final size:53
Alignment explanation
Indices: 59140768--59140926 Score: 193
Period size: 53 Copynumber: 3.0 Consensus size: 53
59140758 ACAATAAATA
* * **
59140768 AATAAGTAAATAATAGTAAAGT-AAAAAAATTCATGAAAGGTTGAAATTGTAAT
1 AATAAATAAATAATAGTAAA-TAAAAAAAATTCATGAAAGGCTGAAATTACAAT
* * *
59140821 AATAAATAAGTAATTA-AAAATAAAAAAAATTCATGAAAGGCTAAAATTACAAT
1 AATAAATAAATAA-TAGTAAATAAAAAAAATTCATGAAAGGCTGAAATTACAAT
59140874 AATAAATAAAT-A-AGTAAATAATAAAAAATTCATGAAAGGCTGAAATTA-AAT
1 AATAAATAAATAATAGTAAATAA-AAAAAATTCATGAAAGGCTGAAATTACAAT
59140925 AA
1 AA
59140927 ATAAGGGACT
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
50 1 0.01
51 11 0.12
52 27 0.29
53 51 0.55
54 2 0.02
ACGTcount: A:0.60, C:0.04, G:0.11, T:0.26
Consensus pattern (53 bp):
AATAAATAAATAATAGTAAATAAAAAAAATTCATGAAAGGCTGAAATTACAAT
Found at i:59142750 original size:45 final size:44
Alignment explanation
Indices: 59142460--59142960 Score: 425
Period size: 44 Copynumber: 11.0 Consensus size: 44
59142450 GTATGGGAAG
* * * ** *
59142460 TGTAGTTTCAATCTACTCCGCTATAACTTCAAGGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
*
59142504 TGTAGCTGT-AATCTGCTCCACTGCAACTTCATGGAGATAAGATTT
1 TGTAGCT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT
* * * * * *
59142549 GTAGGTTTTAGTTTTAATCTGGTCTACTGCAACTTCAGAGAGATAAAATT
1 -T--G---TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * * * * * * *
59142599 TGTGGCCTT-AGTTTG-TCCCACTGCAATTTTAAGGAAATAAGACT
1 TGTAG-CTTCAATCTGCT-CCACTGCAACTTCAGGGAGATAAGATT
* * *
59142643 CGTAGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * *
59142687 TGTAGCTTCAATCTGCTCCATTGCAACTCCAGGAAGATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
*
59142731 TGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * * * * *
59142776 CAT-TATCTTCAATCTACTCCACTACAATTTTAGGGAGATAAGATC
1 --TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * *
59142821 TGTAGCTTTAATCTGCTCCACTACAATTTCAGGGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* *
59142865 TGTAGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT
1 TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
* * *
59142909 CGCCATGGTAACTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATT
1 -----T-GTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
59142959 TG
1 TG
59142961 CTATGGAGAC
Statistics
Matches: 374, Mismatches: 60, Indels: 46
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.01
44 206 0.55
45 82 0.22
46 1 0.00
47 2 0.01
48 1 0.00
49 2 0.01
50 43 0.11
51 32 0.09
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
TGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
Found at i:59142867 original size:178 final size:179
Alignment explanation
Indices: 59142616--59142958 Score: 492
Period size: 178 Copynumber: 1.9 Consensus size: 179
59142606 TTAGTTTGTC
* **
59142616 CCACTGCAATTTTAAGGAAATAAGACTCGTAGCTTTAATCTGCTCCACTGTAACTTCAGGGAGAT
1 CCACTACAATTTTAAGGAAATAAGACTCGTAGCTTTAATCTGCTCCACTACAACTTCAGGGAGAT
* * *
59142681 AAGATTTGTAGCTTCAATCTGCTCCATTGCAACTCCAGGAAGATAAGATT-TGCTATCTTCAATC
66 AAGATTTGTAGCTTCAATCTACTCCACTGCAACTCCAGGAAGATAAGATTCTGCTAACTTCAATC
* *
59142745 TGCTCCACTGCAACTTCAGGGAGATAAGATTCATTATCTTCAATCTACT
131 TACTCCACTGCAACTTCAAGGAGATAAGATTCATTATCTTCAATCTACT
* * *
59142794 CCACTACAATTTTAGGGAGATAAGA-TCTGTAGCTTTAATCTGCTCCACTACAATTTCAGGGAGA
1 CCACTACAATTTTAAGGAAATAAGACTC-GTAGCTTTAATCTGCTCCACTACAACTTCAGGGAGA
* * * *
59142858 TAAGATTTGTAGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAACTT
65 TAAGATTTGTAGCTTCAATCTACTCCACTGCAACTCCAGGAAGATAAGATT---C-TGCTAACTT
59142923 CAATCTACTCCACTGCAACTTCAAGGAGATAAGATT
126 CAATCTACTCCACTGCAACTTCAAGGAGATAAGATT
59142959 TGCTATGGAG
Statistics
Matches: 144, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
177 2 0.01
178 101 0.70
183 41 0.28
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (179 bp):
CCACTACAATTTTAAGGAAATAAGACTCGTAGCTTTAATCTGCTCCACTACAACTTCAGGGAGAT
AAGATTTGTAGCTTCAATCTACTCCACTGCAACTCCAGGAAGATAAGATTCTGCTAACTTCAATC
TACTCCACTGCAACTTCAAGGAGATAAGATTCATTATCTTCAATCTACT
Found at i:59156560 original size:19 final size:20
Alignment explanation
Indices: 59156538--59156589 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
59156528 AGGTCTTTTT
*
59156538 ATGAAATTTAATGCAT-ATG-
1 ATGAAATGTAATGC-TGATGC
59156557 ATGAAATGTAATGCTGATGC
1 ATGAAATGTAATGCTGATGC
59156577 ATGAAATG-AATGC
1 ATGAAATGTAATGC
59156590 AAAAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 1 0.03
19 21 0.70
20 8 0.27
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGAAATGTAATGCTGATGC
Found at i:59174748 original size:10 final size:10
Alignment explanation
Indices: 59174729--59174764 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
59174719 AAATACATTG
59174729 AAAA-ATAAT
1 AAAATATAAT
59174738 AAAATATAAT
1 AAAATATAAT
*
59174748 AAAATAAAAT
1 AAAATATAAT
59174758 AAAATAT
1 AAAATAT
59174765 TTAAATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 4 0.17
10 20 0.83
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (10 bp):
AAAATATAAT
Found at i:59180838 original size:9 final size:9
Alignment explanation
Indices: 59180824--59180862 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
59180814 GCAAAATTAA
59180824 AAAAGAAAG
1 AAAAGAAAG
59180833 AAAAGAAA-
1 AAAAGAAAG
59180841 AGAAAGAAAG
1 A-AAAGAAAG
*
59180851 AAAAGAAGG
1 AAAAGAAAG
59180860 AAA
1 AAA
59180863 GAGCGCACGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
8 1 0.04
9 25 0.93
10 1 0.04
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:59183336 original size:48 final size:48
Alignment explanation
Indices: 59183275--59183366 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
59183265 TTCAAGAAGG
* *
59183275 GATAAATAATGATAAGAGTGTACACAGTGGAAGACCAAGTTTAGTAAT
1 GATAAATAATGATAAGAATGTACACAGTGGAAAACCAAGTTTAGTAAT
* * *
59183323 GATAAATAGTGATAAGAATGTAGATAGTGGAAAACCAAGTTTAG
1 GATAAATAATGATAAGAATGTACACAGTGGAAAACCAAGTTTAG
59183367 CATTGCATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.25
Consensus pattern (48 bp):
GATAAATAATGATAAGAATGTACACAGTGGAAAACCAAGTTTAGTAAT
Found at i:59191642 original size:46 final size:45
Alignment explanation
Indices: 59191575--59191729 Score: 177
Period size: 46 Copynumber: 3.6 Consensus size: 45
59191565 TTTGAGTACT
* *
59191575 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGT-GTAGCTTTAGCTACACTTA
59191621 TCTGATCAAGTGAAAAAGTGAT-A----AG---T-GCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGTAGCTTTAGCTACACTTA
*
59191657 TCTGATCAA-TAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGT-GAAAAAGTGATAAGTG-TAGCTTTAGCTACACTTA
*
59191703 TCTGATCAAGGGAAAAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
59191730 CTATACTTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 24
0.76 0.04 0.20
Matches are distributed among these distances:
35 1 0.01
36 29 0.32
37 2 0.02
40 2 0.02
42 2 0.02
45 2 0.02
46 54 0.59
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGTAGCTTTAGCTACACTTA
Found at i:59191652 original size:36 final size:36
Alignment explanation
Indices: 59191611--59191751 Score: 149
Period size: 36 Copynumber: 3.6 Consensus size: 36
59191601 GGTAGCTTTA
59191611 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
59191647 GCTACACTTATCTGATCAA-TAGACAAAGTGATAAGTGATAGCTTT
1 GCTACACTTATCTGATCAAGT-GAAAAAGTG---A-T-A-AG---T
*
59191692 AGCTACACTTATCTGATCAAGGGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
59191729 GCTATACTTATCTGATCAAGTGA
1 GCTACACTTATCTGATCAAGTGA
59191752 TAACTATTTT
Statistics
Matches: 88, Mismatches: 5, Indels: 24
0.75 0.04 0.21
Matches are distributed among these distances:
35 1 0.01
36 48 0.55
37 1 0.01
39 1 0.01
40 3 0.03
41 2 0.02
42 3 0.03
43 1 0.01
45 1 0.01
46 27 0.31
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:59191712 original size:82 final size:82
Alignment explanation
Indices: 59191575--59191748 Score: 303
Period size: 82 Copynumber: 2.1 Consensus size: 82
59191565 TTTGAGTACT
* * *
59191575 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGGGAAAAAGT
59191640 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
*
59191657 TCTGATCAATAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGGGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGGGAAAAAGT
*
59191722 GATAAGTGCTATACTTA
66 GATAAGTGCTACACTTA
59191739 TCTGATCAAG
1 TCTGATCAAG
59191749 TGATAACTAT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 86 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGGGAAAAAGT
GATAAGTGCTACACTTA
Found at i:59197563 original size:46 final size:45
Alignment explanation
Indices: 59197511--59197836 Score: 395
Period size: 46 Copynumber: 7.6 Consensus size: 45
59197501 TTTGAGTACT
* *
59197511 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
59197557 TCTGATCAAGTGAAAAAGTG---A-T--TAG--T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
59197593 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
59197639 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
59197675 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
*
59197721 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
*
59197767 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
59197812 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
59197837 ATCATACATA
Statistics
Matches: 247, Mismatches: 13, Indels: 43
0.82 0.04 0.14
Matches are distributed among these distances:
36 56 0.23
37 1 0.00
38 1 0.00
39 2 0.01
40 7 0.03
41 1 0.00
42 8 0.03
43 15 0.06
44 6 0.02
45 21 0.09
46 129 0.52
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:59197588 original size:36 final size:36
Alignment explanation
Indices: 59197547--59197701 Score: 175
Period size: 36 Copynumber: 4.0 Consensus size: 36
59197537 GGTAGCTTTA
*
59197547 GCTACACTTATCTGATCAAGTGAAAAAGTGATTAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
59197583 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
59197628 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
59197665 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
59197701 G
1 G
59197702 TTAGCCTTAG
Statistics
Matches: 102, Mismatches: 7, Indels: 20
0.79 0.05 0.16
Matches are distributed among these distances:
36 65 0.64
37 1 0.01
40 2 0.02
42 2 0.02
45 2 0.02
46 30 0.29
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:59197648 original size:82 final size:82
Alignment explanation
Indices: 59197511--59197819 Score: 440
Period size: 82 Copynumber: 3.7 Consensus size: 82
59197501 TTTGAGTACT
*
59197511 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
59197576 GATTAGTGCTACACTTA
66 GATTAGTGCTACACTTA
59197593 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
* *
59197658 GATAAGTGCTATACTTA
66 GATTAGTGCTACACTTA
* * * *
59197675 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAAGTGAGAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
59197740 GATAAGTGGTAGCCTTAGCTACACTTA
66 G---A-T--TAG---T-GCTACACTTA
* *
59197767 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATCA
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
59197820 GGGACAAGTG
Statistics
Matches: 206, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
82 141 0.68
85 1 0.00
86 1 0.00
88 2 0.01
91 21 0.10
92 40 0.19
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATTAGTGCTACACTTA
Found at i:59197663 original size:128 final size:127
Alignment explanation
Indices: 59197511--59197819 Score: 385
Period size: 128 Copynumber: 2.4 Consensus size: 127
59197501 TTTGAGTACT
* *
59197511 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTG-AAAAGT
*
59197576 GATTAG-T-GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
64 G-TTAGCTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * * * * ** *
59197639 TCTGATCAAGTGAAAAAGTGATAAGTGCTATACTTATCT-GA-TCAAGTGA-CAAAGTGATAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTA-GCTTAGCTACACTTATCTGATC-AAGTGAAAAGT
* *
59197701 GTTAGCCTTAGCTACACTTATCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTT
64 GTTAG-C-TAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTT
59197766 A
127 A
* *
59197767 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCA
59197820 GGGACAAGTG
Statistics
Matches: 150, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
124 4 0.03
125 7 0.05
126 10 0.07
127 7 0.05
128 114 0.76
129 7 0.05
130 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (127 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAAAAGTGT
TAGCTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:59199086 original size:21 final size:21
Alignment explanation
Indices: 59199062--59199101 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
59199052 AAAGCTAAAG
* *
59199062 AAAAGCTTGTTAGAGCTGAAC
1 AAAAGCTCGTAAGAGCTGAAC
59199083 AAAAGCTCGTAAGAGCTGA
1 AAAAGCTCGTAAGAGCTGA
59199102 TCCACCCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (21 bp):
AAAAGCTCGTAAGAGCTGAAC
Found at i:59199776 original size:13 final size:14
Alignment explanation
Indices: 59199750--59199778 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
59199740 TAAAATCAAT
59199750 ATTTAACAAAAATC
1 ATTTAACAAAAATC
59199764 ATTTAAC-AAAATC
1 ATTTAACAAAAATC
59199777 AT
1 AT
59199779 CACACAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (14 bp):
ATTTAACAAAAATC
Found at i:59208572 original size:93 final size:92
Alignment explanation
Indices: 59208395--59208612 Score: 247
Period size: 93 Copynumber: 2.3 Consensus size: 92
59208385 TATGATCACG
* * *
59208395 ACCTTTTACTCACAGGATTTTATGAATCTCGCAGTCCGCTGATTTACGATAACAACCTTTGGCTT
1 ACCTTTTACTTAC-GGATTTTATGAATCTCGCAGTCCGCTGATTTACGATAACAACATTTGACTT
*
59208460 TTTTACAATCCGCTAATTTACGATCATA
65 TCTTACAATCCGCTAATTTACGATCATA
* ** * * **
59208488 ATCTTTTACTTACGGTATTTTATGAATCTCGTGGTCCGTTGATTTACGATTATGACATTTGACTT
1 ACCTTTTACTTACGG-ATTTTATGAATCTCGCAGTCCGCTGATTTACGATAACAACATTTGACTT
** * * * * *
59208553 TCTTACGGTCTGTTGATTTATGATCATT
65 TCTTACAATCCGCTAATTTACGATCATA
59208581 ACCTTTTACTTACGAGATTTTATGAATCTCGC
1 ACCTTTTACTTACG-GATTTTATGAATCTCGC
59208613 GGTATGATCA
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
92 2 0.02
93 100 0.97
94 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.42
Consensus pattern (92 bp):
ACCTTTTACTTACGGATTTTATGAATCTCGCAGTCCGCTGATTTACGATAACAACATTTGACTTT
CTTACAATCCGCTAATTTACGATCATA
Found at i:59208705 original size:38 final size:39
Alignment explanation
Indices: 59208657--59208761 Score: 149
Period size: 38 Copynumber: 2.7 Consensus size: 39
59208647 AGAATCTTGT
*
59208657 GGTCCACTGATTTACGATCACAACTTTTGGCTTTCT-AC
1 GGTCCGCTGATTTACGATCACAACTTTTGGCTTTCTCAC
* * *
59208695 GGTCTGCTGATTTACGATCACGACCTTTGGCTTTCTCAC
1 GGTCCGCTGATTTACGATCACAACTTTTGGCTTTCTCAC
* *
59208734 GGTCCGTTGATTTACGATCGCAACTTTT
1 GGTCCGCTGATTTACGATCACAACTTTT
59208762 TACTTACAAG
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
38 32 0.56
39 25 0.44
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (39 bp):
GGTCCGCTGATTTACGATCACAACTTTTGGCTTTCTCAC
Found at i:59209682 original size:42 final size:42
Alignment explanation
Indices: 59209547--59209834 Score: 240
Period size: 42 Copynumber: 6.8 Consensus size: 42
59209537 CAAACAAAAA
* * * *** ** *
59209547 CGCCGCTAAAGACCATGTTCTTTAGTGGCGCTTAGAAAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTACTAAG
**** * *
59209589 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGGA-AAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTACTAAG
* * *
59209631 CGCCGCTAAAGATCATGTTCTTTAGCGACGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTACTAAG
* * *
59209673 CGCCTCTAAAGAACGTGTTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTACTAAG
* * *
59209715 CACCTCTAAAGAACGTGTTCTTTAGCGGCGTTTTTCTAC-AAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT-TACTAAG
* * *
59209757 CGCCGCTAAAGAACATGTTCTTTAGTGGCATTTTTTTTAC-AAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGC--GTTTTTTACTAAG
* * * *
59209800 CACCGCAAAAGAACATGTTCTTTAGTGGCGCTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
59209835 ATACAAAAAC
Statistics
Matches: 210, Mismatches: 31, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
41 6 0.03
42 161 0.77
43 38 0.18
44 5 0.02
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTACTAAG
Found at i:59211693 original size:13 final size:13
Alignment explanation
Indices: 59211675--59211776 Score: 73
Period size: 13 Copynumber: 7.5 Consensus size: 13
59211665 AGGAAAGAAT
59211675 TAGTATTATGCAC
1 TAGTATTATGCAC
59211688 TAGTATTATGCAC
1 TAGTATTATGCAC
* *
59211701 TAGTAAGGTGATTG--T
1 TAGT-A--TTA-TGCAC
* *
59211716 TAGTAATATGTGCAG
1 TAGT-AT-TATGCAC
*
59211731 TAGTAGTATTGCAC
1 TAGTATTA-TGCAC
59211745 TAGTATTATGCAC
1 TAGTATTATGCAC
*
59211758 TAGTATTATGCAT
1 TAGTATTATGCAC
59211771 TAGTAT
1 TAGTAT
59211777 CTCTTGTCTA
Statistics
Matches: 71, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
13 44 0.62
14 13 0.18
15 10 0.14
16 2 0.03
17 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (13 bp):
TAGTATTATGCAC
Found at i:59211982 original size:11 final size:11
Alignment explanation
Indices: 59211966--59211994 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
59211956 GATGATAATA
59211966 CATTAGTTACC
1 CATTAGTTACC
59211977 CATTAGTTACC
1 CATTAGTTACC
59211988 CA-TAGTT
1 CATTAGTT
59211995 TGAGATATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:59213364 original size:84 final size:84
Alignment explanation
Indices: 59213255--59213614 Score: 603
Period size: 84 Copynumber: 4.3 Consensus size: 84
59213245 CCACATTTCC
*
59213255 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGT
59213320 CTGGAATTGCATTATTTGT
66 CTGGAATTGCATTATTTGT
* * *
59213339 GGCGTTTTCCTAAAAATGCCACTAAAGATTACAGCTGTGAACAGAAACGACACCATTTTGCATGG
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTT-CGTGG
** *
59213404 TCTGGAACAAGCATTGTTTGT
65 TCTGGAA-TTGCATTATTTGT
*
59213425 GGCATTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGT
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGT
59213490 CTGGAATTGCATTATTTGT
66 CTGGAATTGCATTATTTGT
* *
59213509 GGCGTTTTCCTAAAAATGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGT
*
59213574 CTGGAATTGCATTATTTAT
66 CTGGAATTGCATTATTTGT
59213593 GGCGTTTTCCTAAAAACGCCAC
1 GGCGTTTTCCTAAAAACGCCAC
59213615 CAAAAGTTTA
Statistics
Matches: 255, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
84 167 0.65
85 22 0.09
86 66 0.26
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (84 bp):
GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGT
CTGGAATTGCATTATTTGT
Found at i:59213542 original size:170 final size:168
Alignment explanation
Indices: 59213259--59213614 Score: 613
Period size: 170 Copynumber: 2.1 Consensus size: 168
59213249 ATTTCCGGCG
*
59213259 TTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCTGG
1 TTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGTCTGG
59213324 AATTGCATTATTTGTGGCGTTTTCCTAAAAATGCCACTAAAGATTACAGCTGTGAACAGAAACGA
66 AATTGCATTATTTGTGGCGTTTTCCTAAAAATGCCACTAAAGATTACAGCTGTGAACAGAAACGA
* *
59213389 CACCATTTTGCATGGTCTGGAACAAGCATTGTTTGTGGCA
131 CACCATTTT-CATGGTCTGGAA-AAGCATTATTTATGGCA
59213429 TTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGTCTGG
1 TTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGTCTGG
*
59213494 AATTGCATTATTTGTGGCGTTTTCCTAAAAATGCCACTAAATATTACAGCTGTGAACAGAAACGA
66 AATTGCATTATTTGTGGCGTTTTCCTAAAAATGCCACTAAAGATTACAGCTGTGAACAGAAACGA
* * ** *
59213559 CACCGTTTTCGTGGTCTGGAATTGCATTATTTATGGCG
131 CACCATTTTCATGGTCTGGAAAAGCATTATTTATGGCA
59213597 TTTTCCTAAAAACGCCAC
1 TTTTCCTAAAAACGCCAC
59213615 CAAAAGTTTA
Statistics
Matches: 177, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
168 30 0.17
169 11 0.06
170 136 0.77
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (168 bp):
TTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCATTTTCGTGGTCTGG
AATTGCATTATTTGTGGCGTTTTCCTAAAAATGCCACTAAAGATTACAGCTGTGAACAGAAACGA
CACCATTTTCATGGTCTGGAAAAGCATTATTTATGGCA
Found at i:59215513 original size:112 final size:112
Alignment explanation
Indices: 59215331--59216142 Score: 1333
Period size: 112 Copynumber: 7.3 Consensus size: 112
59215321 AACACCTAGA
* * *
59215331 TTAGCGGCGCTTTACAAAAAACGCCACTAATTCCCCCCCAAAGGACACAGAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
*
59215396 GTGTATTATTTGCGGCATTTTTTATAAACGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
*
59215443 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
59215508 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* * ** *
59215555 TTAGCGGCGCTTTACAATAAACGCTACTAAGTCCCCCATAAAGGCCACAAAACGGCACCGGCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* *
59215620 GTGTATTATTTGCGGCGTTTTCTATAAACGCTCCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
59215667 TTAGCGGCGCTTTACAATAAACGCCACTAATT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
*
59215731 GTGTATTATTTGCGGCG-TTTTTATAAACGCTGCTAATTTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* *
59215777 TTAGCGGCGCTTTACAAAAAACGCCACTAATT-CCCCCCAAAGGCCACAAAACGGCACCGTATGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* *
59215841 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATTTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* * *
59215888 TTAGCGGTGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGACCACAGAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
*
59215953 GTGTATTATTTCCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* *
59216000 TTAGTGGCGCTTTACAATAAACCCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * *
59216065 GTGTATTATTTGCGGCGTTTTCTATAAATGCTGCTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
* ** *
59216112 TTAGCGGCGCTTTTCCTTAAACGCCGCTAAT
1 TTAGCGGCGCTTTACAATAAACGCCACTAAT
59216143 GCTCACTCTT
Statistics
Matches: 655, Mismatches: 43, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
110 104 0.16
111 105 0.16
112 446 0.68
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (112 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
Found at i:59216141 original size:40 final size:39
Alignment explanation
Indices: 59216076--59216182 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 39
59216066 TGTATTATTT
* *
59216076 GCGGCGTTTTCTATAAATGCTGCTAATGCTCACTCTTTA
1 GCGGCGTTTTCTATAAACGCCGCTAATGCTCACTCTTTA
59216115 GCGGCGCTTTTCCT-TAAACGCCGCTAATGCTCACTCTTTA
1 GCGGCG-TTTT-CTATAAACGCCGCTAATGCTCACTCTTTA
* **
59216155 GCAGCGTTTTTGCTCCAAACGCCGCTAA
1 GCGGCG-TTTT-CTATAAACGCCGCTAA
59216183 AAGTGCCGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
39 6 0.10
40 39 0.66
41 14 0.24
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.33
Consensus pattern (39 bp):
GCGGCGTTTTCTATAAACGCCGCTAATGCTCACTCTTTA
Found at i:59216740 original size:15 final size:15
Alignment explanation
Indices: 59216720--59216766 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
59216710 AATTTTATAA
59216720 TATAAATTCAATATT
1 TATAAATTCAATATT
* *
59216735 TATAAATTTCTATA-C
1 TATAAA-TTCAATATT
*
59216750 TAAAAATTCAATATT
1 TATAAATTCAATATT
59216765 TA
1 TA
59216767 ATTTTTCATA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
14 6 0.24
15 13 0.52
16 6 0.24
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (15 bp):
TATAAATTCAATATT
Found at i:59217552 original size:16 final size:17
Alignment explanation
Indices: 59217525--59217556 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
59217515 AGATTAATTT
59217525 ATTTTCTTATAAACTAA
1 ATTTTCTTATAAACTAA
59217542 ATTTT-TTATAAACTA
1 ATTTTCTTATAAACTA
59217557 TTTTTATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTTCTTATAAACTAA
Found at i:59218588 original size:14 final size:14
Alignment explanation
Indices: 59218569--59218599 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
59218559 TAAATAGGAT
59218569 GTTTGATTATTTCA
1 GTTTGATTATTTCA
59218583 GTTTGATTATTTCA
1 GTTTGATTATTTCA
59218597 GTT
1 GTT
59218600 CTAGGAAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.16, T:0.58
Consensus pattern (14 bp):
GTTTGATTATTTCA
Found at i:59219606 original size:12 final size:13
Alignment explanation
Indices: 59219589--59219619 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
59219579 TCTATATAAG
59219589 TTTAAAAAAT-AT
1 TTTAAAAAATCAT
59219601 TTTAAAAAATCAT
1 TTTAAAAAATCAT
59219614 TTTAAA
1 TTTAAA
59219620 CTTGCTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (13 bp):
TTTAAAAAATCAT
Found at i:59220494 original size:94 final size:94
Alignment explanation
Indices: 59220379--59222057 Score: 1818
Period size: 94 Copynumber: 17.9 Consensus size: 94
59220369 TTGTTGTAGT
* * *
59220379 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGTATTTGTAG-TTACATCTTTCTCCACTACAA
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTT-CATCTTGCTCCACTACAA
* *
59220443 CTTTAGGGAGATAAGACTCGCTATGGTAGA-
65 CTTCAGGGAGATAAGATTCGCTATGGTA-AC
* * * * *
59220473 TTCAATCCGACTCATTACAACTTCAGGGGTATAAGATTTGTAGCTTTATCTTGCTCCACTACAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
** **
59220538 TTCAGGGAGATAAGACCCGCTATAATAGA-
66 TTCAGGGAGATAAGATTCGCTATGGTA-AC
* * * *
59220567 TTCAACCCGACCCATTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTACAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
**
59220632 TTCAGGGAGATAAGATTCATTATGGTAAC
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
* * * * * *
59220661 TTCAATCCAACCCATTGCAACTTCAAGGGTATAGAATTGGTAGCTTCATCTTGCTCCACTGCAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
*
59220726 TTCTA-GGAGATAAGATTCACTATGGTAAC
66 TTC-AGGGAGATAAGATTCGCTATGGTAAC
* * *
59220755 TTCAATCCGACCCACTGCAACTTCAAGGGTATAGGATTTATAGCTTCATCTTGCTCCACTGCAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
* *
59220820 TTCAGGGAGATAAGATTCACTATGGTAAA
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
** * * * ** *
59220849 TTCAATCCGACTTACTGCAACTTTAGGGGTATAAGATTTGTACCTTCATCTTGCTTTACTGCAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
* * *
59220914 TTTAGGGAGATAAGATTTGCTATGATAAC
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
* * * * * * * *
59220943 TTTAATCCAACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTTATCTTACTCTACTGCAAT
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
* * * *
59221008 TTTAGGGAGATAAGACTCACTATGATAGA-
66 TTCAGGGAGATAAGATTCGCTATGGTA-AC
* *
59221037 TTCAATCTGACCCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
* * * * * *
59221102 TCCAAGAAAATAAGACTCGCTATAGTAGA-
66 TTCAGGGAGATAAGATTCGCTATGGTA-AC
* * * * * * *
59221131 TTCAATCCAACCCAGTGCAACTTCAGAGGTATAGAATTTGTAGCTTTATCTTGCTCCACTGCAAT
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
*
59221196 TTTAGGGAGATAAGATTCGCTATGGTAAC
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
** * ** * * *
59221225 TTCAATTTGACCCACTACAACTTCAGGGGTACGGGATTTGTAGCTTTATATTGCTCTACTACAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
*
59221290 TTTAGGGAGATAAGATTCGCTATGGTAAC
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
* * * * * * * * **
59221319 TTCAATCTGACCCAC-GATAACTTCAGGGGTACAAGATTTGAAGTTTTATCTTGCTCAACTGTAA
1 TTCAATCCGACCCACTG-CAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAA
* *
59221383 ATTCAGGGAGATAAGTTTCGCTATGGTAAC
65 CTTCAGGGAGATAAGATTCGCTATGGTAAC
* * * * * * * * ** *
59221413 TTCAATCCGACCCACGGTAACTTCAGGGGTACAAGATTTGAAGTTTTATCTTGCTCTACTGTAAA
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
*
59221478 TTCAGGGAGATAAGTTTCGCTATGGTAAC
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
*
59221507 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
59221572 TTCTA-GGAGATAAGATTCGCTATGGTAAC
66 TTC-AGGGAGATAAGATTCGCTATGGTAAC
* * * * * * * *
59221601 TTCAATCCGATCCACTACAACTTTAGGGGTATAGAATTTGTAGCTTCATTTTGCTCTACTATAAA
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
* * * *
59221666 TTTAGGGAGATAATACTCGCTATGATAGA-
66 TTCAGGGAGATAAGATTCGCTATGGTA-AC
* ** * * * * * * * *
59221695 TTTAATCTAACCTAGTGCAATTTCAAGGGTAT-GAGATTTGTAACTTCATATTACTCCACTGCAA
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAG-GATTTGTAGCTTCATCTTGCTCCACTACAA
59221759 CTTCAGGGAGATAAGATTCGCTATGGTAAC
65 CTTCAGGGAGATAAGATTCGCTATGGTAAC
* * * *
59221789 TTCAATCCGACCTAGTGCAACTTCA---GTATAGGATTTGTAACTTTATCTTGCTCCACTACAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
* *
59221851 TTCAGAGAGATAAGATTTGCTATGGTAAC
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
* * * *
59221880 TTTAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAACTTCATCTTGCTCTACTACAAC
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
* * * * * *
59221945 ATCAAGGAGATACGATTTGCTATTGTAGC
66 TTCAGGGAGATAAGATTCGCTATGGTAAC
* * ** * * *
59221974 TTCAATCCGACCCACTACAAATTCAGGGGTATAGGATTTGTAATTTCATCTTACTCCACTAAAAT
1 TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
59222039 TTCAGGGAGATAAGATTCG
66 TTCAGGGAGATAAGATTCG
59222058 AGGTTTCACT
Statistics
Matches: 1355, Mismatches: 213, Indels: 34
0.85 0.13 0.02
Matches are distributed among these distances:
91 79 0.06
92 1 0.00
93 6 0.00
94 1262 0.93
95 7 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (94 bp):
TTCAATCCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAAC
TTCAGGGAGATAAGATTCGCTATGGTAAC
Found at i:59220724 original size:44 final size:44
Alignment explanation
Indices: 59220676--59220823 Score: 140
Period size: 44 Copynumber: 3.2 Consensus size: 44
59220666 TCCAACCCAT
59220676 TGCAACTTCAAGGGTATAGAATTGGTAGCTTCATCTTGCTCCAC
1 TGCAACTTCAAGGGTATAGAATTGGTAGCTTCATCTTGCTCCAC
* * *
59220720 TGCAACTTCTAGGAG-ATAAGATTCACTATGGTAACTTCAATC-CGAC-CCAC
1 TGCAACTTCAAGG-GTAT-AGA---A-T-TGGTAGCTTC-ATCTTG-CTCCAC
* **
59220770 TGCAACTTCAAGGGTATAGGATTTATAGCTTCATCTTGCTCCAC
1 TGCAACTTCAAGGGTATAGAATTGGTAGCTTCATCTTGCTCCAC
59220814 TGCAACTTCA
1 TGCAACTTCA
59220824 GGGAGATAAG
Statistics
Matches: 83, Mismatches: 9, Indels: 24
0.72 0.08 0.21
Matches are distributed among these distances:
43 4 0.05
44 36 0.43
45 5 0.06
46 1 0.01
48 1 0.01
49 4 0.05
50 28 0.34
51 4 0.05
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
TGCAACTTCAAGGGTATAGAATTGGTAGCTTCATCTTGCTCCAC
Found at i:59220773 original size:50 final size:48
Alignment explanation
Indices: 59220622--59220886 Score: 166
Period size: 50 Copynumber: 5.5 Consensus size: 48
59220612 TCATCTTACT
* *
59220622 CCACTACAACTTCAGGGAGATAAGATTCATTATGGTAACTTCAATCCAAC
1 CCACTGCAACTTCA-GGAGATAAGATTCA-TATGGTAACTTCAATCCGAC
* * *
59220672 CCATTGCAACTTCAAGG-G-TATAGA---AT-TGGTAGCTTC-ATCTTG-C
1 CCACTGCAACTTC-AGGAGATA-AGATTCATATGGTAACTTCAATC-CGAC
59220715 TCCACTGCAACTTCTAGGAGATAAGATTCACTATGGTAACTTCAATCCGAC
1 -CCACTGCAACTTC-AGGAGATAAGATTCA-TATGGTAACTTCAATCCGAC
* * *
59220766 CCACTGCAACTTCAAGG-GTATAGGATT--TA---TAGCTTC-ATCTTG-C
1 CCACTGCAACTTC-AGGAG-ATAAGATTCATATGGTAACTTCAATC-CGAC
*
59220809 TCCACTGCAACTTCAGGGAGATAAGATTCACTATGGTAAATTCAATCCGAC
1 -CCACTGCAACTTCA-GGAGATAAGATTCA-TATGGTAACTTCAATCCGAC
** * *
59220860 TTACTGCAACTTTAGGGGTATAAGATT
1 CCACTGCAACTTCAGGAG-ATAAGATT
59220887 TGTACCTTCA
Statistics
Matches: 167, Mismatches: 21, Indels: 54
0.69 0.09 0.22
Matches are distributed among these distances:
43 9 0.05
44 53 0.32
45 6 0.04
46 3 0.02
47 4 0.02
48 3 0.02
49 9 0.05
50 71 0.43
51 9 0.05
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (48 bp):
CCACTGCAACTTCAGGAGATAAGATTCATATGGTAACTTCAATCCGAC
Found at i:59221572 original size:44 final size:44
Alignment explanation
Indices: 59221518--59221661 Score: 112
Period size: 44 Copynumber: 3.1 Consensus size: 44
59221508 TCAATCTGAC
*
59221518 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCT
1 CCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCT
* * * * *
59221562 CCACTACAACTTCTAGGAG-ATAAGATTCGCTATGGTAACTTCAATC-CGAT
1 CCACTACAACTTC-AGGGGTATAGGA-T---T-T-GTAGCTTC-ATCTTGCT
* * *
59221612 CCACTACAACTTTAGGGGTATAGAATTTGTAGCTTCATTTTGCT
1 CCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCT
*
59221656 CTACTA
1 CCACTA
59221662 TAAATTTAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
43 2 0.03
44 31 0.41
45 6 0.08
46 1 0.01
48 1 0.01
49 6 0.08
50 25 0.33
51 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCT
Found at i:59227010 original size:5 final size:5
Alignment explanation
Indices: 59227002--59227028 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
59226992 CAACCACAAC
59227002 CAAAA CAAAA CAAAA CAAAA CAAAA CA
1 CAAAA CAAAA CAAAA CAAAA CAAAA CA
59227029 CGTCAGTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:59228472 original size:21 final size:19
Alignment explanation
Indices: 59228419--59228476 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 19
59228409 TAATAATACT
*
59228419 ATATGATAATAATGATAATA
1 ATATGATAATAAT-ATAAAA
59228439 ATAGTGA-AATAATATAAAA
1 ATA-TGATAATAATATAAAA
59228458 ATGTATGATAATAATATAA
1 A--TATGATAATAATATAA
59228477 TTACATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 6 0.18
20 12 0.36
21 15 0.45
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (19 bp):
ATATGATAATAATATAAAA
Found at i:59228664 original size:23 final size:24
Alignment explanation
Indices: 59228621--59228694 Score: 105
Period size: 23 Copynumber: 3.1 Consensus size: 24
59228611 ATGTAAATAG
59228621 AAAAAAATATAAATGGGCTAACTTT
1 AAAAAAA-ATAAATGGGCTAACTTT
* *
59228646 AAAAAAAATAAA-GGACTAAATTT
1 AAAAAAAATAAATGGGCTAACTTT
*
59228669 AAAATAAATAAATGGGCTAACTTT
1 AAAAAAAATAAATGGGCTAACTTT
59228693 AA
1 AA
59228695 TGAATTAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
23 20 0.47
24 16 0.37
25 7 0.16
ACGTcount: A:0.57, C:0.07, G:0.11, T:0.26
Consensus pattern (24 bp):
AAAAAAAATAAATGGGCTAACTTT
Found at i:59229165 original size:11 final size:12
Alignment explanation
Indices: 59229135--59229165 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
59229125 TCTATACAAG
59229135 TTTAAAAAATCA
1 TTTAAAAAATCA
59229147 TTTAAAAAATCA
1 TTTAAAAAATCA
59229159 TTTAAAA
1 TTTAAAA
59229166 CTTGTTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
TTTAAAAAATCA
Found at i:59230796 original size:21 final size:21
Alignment explanation
Indices: 59230758--59230797 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
59230748 ACTAGTTTGA
*
59230758 TTAATTGATTGGCTATCGAAG
1 TTAATTGATTGGCGATCGAAG
59230779 TTAATTTGATTGG-GATCGA
1 TTAA-TTGATTGGCGATCGA
59230798 TTAAAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (21 bp):
TTAATTGATTGGCGATCGAAG
Found at i:59237259 original size:24 final size:24
Alignment explanation
Indices: 59237232--59237278 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
59237222 TGAAATGTTT
59237232 AAGGTTAAAAAAGATGAAAGGTGG
1 AAGGTTAAAAAAGATGAAAGGTGG
***
59237256 AAGGTTAAGGGAGATGAAAGGTG
1 AAGGTTAAAAAAGATGAAAGGTG
59237279 AAATGTTGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.38, T:0.17
Consensus pattern (24 bp):
AAGGTTAAAAAAGATGAAAGGTGG
Found at i:59248190 original size:22 final size:22
Alignment explanation
Indices: 59248151--59248192 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
59248141 ATAATATAGA
*
59248151 TTTAATAAATGCAGAAAAATCT
1 TTTAATAAATGCAAAAAAATCT
59248173 TTTAATAAATAG-AAAAAAAT
1 TTTAATAAAT-GCAAAAAAAT
59248193 TTAAACTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (22 bp):
TTTAATAAATGCAAAAAAATCT
Found at i:59248195 original size:19 final size:21
Alignment explanation
Indices: 59248150--59248196 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
59248140 AATAATATAG
*
59248150 ATTTAATAAATGCAGAAAAATC
1 ATTTAATAAAT-CAGAAAAATA
*
59248172 TTTTAATAAAT-AGAAAAA-A
1 ATTTAATAAATCAGAAAAATA
59248191 ATTTAA
1 ATTTAA
59248197 ACTGTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 5 0.23
20 7 0.32
22 10 0.45
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (21 bp):
ATTTAATAAATCAGAAAAATA
Found at i:59252269 original size:18 final size:18
Alignment explanation
Indices: 59252248--59252283 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
59252238 TTTTCTTCTA
*
59252248 ATAAATCTTTTTTTTATT
1 ATAAATATTTTTTTTATT
*
59252266 ATAACTATTTTTTTTATT
1 ATAAATATTTTTTTTATT
59252284 TCCTGGTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (18 bp):
ATAAATATTTTTTTTATT
Found at i:59258869 original size:40 final size:40
Alignment explanation
Indices: 59258722--59258974 Score: 425
Period size: 40 Copynumber: 6.2 Consensus size: 40
59258712 AGTAAATATA
59258722 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGAT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTG-T
*
59258763 TGCAAACACTCATCTCACCAATGTCAATATGCACATCTGAT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTG-T
*
59258804 TGCAAATACTCATCTCACCAATGTCAATATGCATATCTGT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGT
* *
59258844 TACAAACACTCATCTCACCAGTGTCAATATGCATATCTGT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGT
59258884 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGT
*
59258924 TGCAAACACTCGTCTCACCAATGTCAATATGCATATCTGAT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTG-T
*
59258965 AGCAAACACT
1 TGCAAACACT
59258975 AGAGTTATGT
Statistics
Matches: 201, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 114 0.57
41 87 0.43
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (40 bp):
TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGT
Found at i:59263373 original size:16 final size:16
Alignment explanation
Indices: 59263349--59263379 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59263339 TTTGTTGAGT
*
59263349 ATTGTCAAGACAAGAC
1 ATTGACAAGACAAGAC
59263365 ATTGACAAGACAAGA
1 ATTGACAAGACAAGA
59263380 GACTAGTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (16 bp):
ATTGACAAGACAAGAC
Found at i:59280991 original size:13 final size:13
Alignment explanation
Indices: 59280975--59281016 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
59280965 TTTGTTTTAT
59280975 TATATTAATATAA
1 TATATTAATATAA
59280988 TATATT-AT-T-A
1 TATATTAATATAA
*
59280998 TATAATAATATAA
1 TATATTAATATAA
59281011 TATATT
1 TATATT
59281017 TACTTACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 6 0.25
11 3 0.12
12 3 0.12
13 12 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATTAATATAA
Found at i:59281006 original size:23 final size:21
Alignment explanation
Indices: 59280971--59281016 Score: 74
Period size: 23 Copynumber: 2.1 Consensus size: 21
59280961 TTTATTTGTT
59280971 TTATTATATTAATATAATATA
1 TTATTATATTAATATAATATA
59280992 TTATTATATAATAATATAATATA
1 TTATTATAT--TAATATAATATA
59281015 TT
1 TT
59281017 TACTTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 9 0.39
23 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATTATATTAATATAATATA
Found at i:59290263 original size:5 final size:5
Alignment explanation
Indices: 59290253--59290280 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
59290243 AACATTTCCC
59290253 ATGTG ATGTG ATGTG ATGTG ATGTG ATG
1 ATGTG ATGTG ATGTG ATGTG ATGTG ATG
59290281 AGTTTTACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.39
Consensus pattern (5 bp):
ATGTG
Found at i:59290967 original size:21 final size:21
Alignment explanation
Indices: 59290941--59290980 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
59290931 CTTTCACACA
*
59290941 AGATTT-TTTCTTTCACAAGGG
1 AGATTTGTTT-TTTAACAAGGG
59290962 AGATTTGTTTTTTAACAAG
1 AGATTTGTTTTTTAACAAG
59290981 CATCATAGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (21 bp):
AGATTTGTTTTTTAACAAGGG
Found at i:59292927 original size:22 final size:22
Alignment explanation
Indices: 59292880--59292924 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
59292870 AATTTAATCC
59292880 TTAAATTTCTATTTTTAGAAAT
1 TTAAATTTCTATTTTTAGAAAT
* *
59292902 TTAATTTTTTATTTTTA-AAAT
1 TTAAATTTCTATTTTTAGAAAT
59292923 TT
1 TT
59292925 TAAAATTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
TTAAATTTCTATTTTTAGAAAT
Found at i:59297350 original size:28 final size:28
Alignment explanation
Indices: 59297319--59297373 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
59297309 TTCAGTATGA
*
59297319 ATAAAGACTTAAGTTTCATTACCCTTCT
1 ATAAAGACTTAAGTTTCACTACCCTTCT
*
59297347 ATAAAGACTTAAGTTTTACTACCCTTC
1 ATAAAGACTTAAGTTTCACTACCCTTC
59297374 CTTTTATGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (28 bp):
ATAAAGACTTAAGTTTCACTACCCTTCT
Found at i:59305653 original size:37 final size:37
Alignment explanation
Indices: 59305622--59305697 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
59305612 TCATAAACAT
*
59305622 TTCTAAATATATTAAGGTTAAAATATGTCATAAGTCC
1 TTCTAAATATATTAAGGTTAAAATATGTCATAAGACC
*
59305659 TTCTAAATATATTAAGGTTAAAATATGTCATAAGTCC
1 TTCTAAATATATTAAGGTTAAAATATGTCATAAGACC
59305696 TT
1 TT
59305698 ATACTCTTCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (37 bp):
TTCTAAATATATTAAGGTTAAAATATGTCATAAGACC
Found at i:59307695 original size:21 final size:21
Alignment explanation
Indices: 59307670--59307721 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
59307660 TTAATAATTT
59307670 TATATTTATATTGTAAAT-AAA
1 TATATTTATA-TGTAAATAAAA
* *
59307691 TATATATATATGTAATTAAAA
1 TATATTTATATGTAAATAAAA
59307712 TATATATTAT
1 TATAT-TTAT
59307722 TAAGAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 6 0.23
21 17 0.65
22 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (21 bp):
TATATTTATATGTAAATAAAA
Found at i:59307698 original size:19 final size:19
Alignment explanation
Indices: 59307671--59307719 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
59307661 TAATAATTTT
*
59307671 ATATTTATATTGTAAATAA
1 ATATATATATTGTAAATAA
*
59307690 ATATATATATATGTAATTAA
1 ATATATATAT-TGTAAATAA
59307710 A-ATATATATT
1 ATATATATATT
59307720 ATTAAGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 1 0.04
19 17 0.63
20 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
ATATATATATTGTAAATAA
Found at i:59307730 original size:23 final size:21
Alignment explanation
Indices: 59307688--59307734 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
59307678 TATTGTAAAT
* *
59307688 AAATATATATATATGTAATTA
1 AAATATATATATAAGAAATTA
59307709 AAATATATATTATTAAGAAATTA
1 AAATATATA-TA-TAAGAAATTA
59307732 AAA
1 AAA
59307735 ATTAAACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 2 0.09
23 11 0.50
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
AAATATATATATAAGAAATTA
Found at i:59308714 original size:22 final size:22
Alignment explanation
Indices: 59308686--59308730 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
59308676 AGTGATCACA
59308686 AATTATGCATAAGATTAAATGG
1 AATTATGCATAAGATTAAATGG
59308708 AATTATGCATAAGATTAAATGG
1 AATTATGCATAAGATTAAATGG
59308730 A
1 A
59308731 TTGAATACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (22 bp):
AATTATGCATAAGATTAAATGG
Found at i:59311724 original size:3 final size:3
Alignment explanation
Indices: 59311716--59311762 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
59311706 ATTATGTTTG
59311716 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A-A AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
59311763 GGGAAGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Done.