Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 192 of 216
Found at i:59926393 original size:125 final size:126
Alignment explanation
Indices: 59926167--59926519 Score: 555
Period size: 126 Copynumber: 2.8 Consensus size: 126
59926157 CCCAAACATG
* * *
59926167 CTACTGTAGCAAAAGTGCGTCCAAGAGGCCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
59926232 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAA-AATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTACATGAC
* *
59926292 CTACTGTAGCAAAAGCGCATCCACGAGGCCGTGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * *
59926357 TAGAAGCGATATTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGCC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTACATGAC
*
59926418 CTACTGTAGCAAAAGCGCGTCCACGAGACCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
** ** *
59926483 TAGAAGTTATTTTATACTATTTTATCAGAAACATCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
59926520 CTCGAAATTA
Statistics
Matches: 208, Mismatches: 19, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
125 100 0.48
126 108 0.52
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (126 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTACATGAC
Found at i:59929498 original size:24 final size:24
Alignment explanation
Indices: 59929461--59929533 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
59929451 GGTAAGACAT
59929461 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
* *
59929485 TTTCCACTGTTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
*
59929509 TTTCCACAGCTCCTCTATTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
59929533 T
1 T
59929534 ATCGATTGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.12, C:0.47, G:0.04, T:0.37
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:59932366 original size:34 final size:35
Alignment explanation
Indices: 59932300--59932366 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
59932290 CAAACACCAG
* *
59932300 AAAATATTTTCCTGTAAGTCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
59932335 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
59932367 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:59945173 original size:5 final size:5
Alignment explanation
Indices: 59945163--59945198 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
59945153 CTAATAAAGG
* *
59945163 ATAAA ATAAA ATAAA ATAAA GTAAC ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
59945199 ACAAGTCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:59945646 original size:24 final size:24
Alignment explanation
Indices: 59945619--59945667 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
59945609 TTAAAAAACG
* *
59945619 TGTACATATATTATAGAAAATGTA
1 TGTACATAAAGTATAGAAAATGTA
*
59945643 TGTATATAAAGTATAGAAAATGTA
1 TGTACATAAAGTATAGAAAATGTA
59945667 T
1 T
59945668 ATGTATTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.47, C:0.02, G:0.14, T:0.37
Consensus pattern (24 bp):
TGTACATAAAGTATAGAAAATGTA
Found at i:59945648 original size:20 final size:20
Alignment explanation
Indices: 59945619--59945677 Score: 55
Period size: 24 Copynumber: 2.8 Consensus size: 20
59945609 TTAAAAAACG
*
59945619 TGTACATATATTATAGAAAA
1 TGTATATATATTATAGAAAA
*
59945639 TGTATGTATATAAAGTATAGAAAA
1 TGTA--TATAT--ATTATAGAAAA
*
59945663 TGTATATGTATTATA
1 TGTATATATATTATA
59945678 AAATATAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
20 9 0.29
22 8 0.26
24 14 0.45
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.39
Consensus pattern (20 bp):
TGTATATATATTATAGAAAA
Found at i:59945758 original size:3 final size:3
Alignment explanation
Indices: 59945750--59945788 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
59945740 ATACATGGCT
59945750 ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
59945789 GATCGATAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:59947976 original size:25 final size:25
Alignment explanation
Indices: 59947942--59948007 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
59947932 GGACACACTA
59947942 CAGCTCGCATGAGCTTCCCGTTATT
1 CAGCTCGCATGAGCTTCCCGTTATT
* *
59947967 CAGCTCGCATGACCTTCCTGTTATT
1 CAGCTCGCATGAGCTTCCCGTTATT
* *
59947992 CAGCTCGAAAGAGCTT
1 CAGCTCGCATGAGCTT
59948008 ACTATTTACA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTCCCGTTATT
Found at i:59950234 original size:52 final size:52
Alignment explanation
Indices: 59950155--59950423 Score: 388
Period size: 52 Copynumber: 5.2 Consensus size: 52
59950145 TACTTCTGAT
* **
59950155 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
1 CAAGTGA-AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* * *
59950208 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
59950260 C------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
59950306 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
** *
59950358 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
*
59950410 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
59950424 GCTACACTTA
Statistics
Matches: 197, Mismatches: 12, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
46 44 0.22
52 136 0.69
53 17 0.09
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
Found at i:59950269 original size:98 final size:98
Alignment explanation
Indices: 59950149--59950423 Score: 415
Period size: 98 Copynumber: 2.7 Consensus size: 98
59950139 TTTGAGTACT
*
59950149 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
59950214 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTACACTTA
**
59950247 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
59950312 AAAAGTGATAAGTGATAGCTTCGGCTACACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTACACTTA
*
59950345 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGA
*
59950410 CAAAGTGATAAGTG
60 C-AAGTGAAAAGTG
59950424 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
98 106 0.66
104 43 0.27
105 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTACACTTA
Found at i:59950431 original size:37 final size:37
Alignment explanation
Indices: 59950387--59950532 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
59950377 GATAGCTTTA
59950387 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
59950424 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
59950461 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
59950498 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
59950533 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:59954213 original size:5 final size:5
Alignment explanation
Indices: 59954203--59954245 Score: 77
Period size: 5 Copynumber: 8.6 Consensus size: 5
59954193 AAACTATAAA
*
59954203 TATTT TATTT TATTT TACTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TAT
59954246 AATGAGAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:59955121 original size:14 final size:15
Alignment explanation
Indices: 59955085--59955122 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
59955075 ATTTTAGGGG
59955085 TGTTAT-AAATAATGT
1 TGTTATGAAA-AATGT
59955100 TGTTATGAAAAATGT
1 TGTTATGAAAAATGT
59955115 T-TTATGAA
1 TGTTATGAA
59955123 TTCTTTTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.32
15 12 0.55
16 3 0.14
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (15 bp):
TGTTATGAAAAATGT
Found at i:59958930 original size:15 final size:15
Alignment explanation
Indices: 59958910--59958941 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
59958900 AAGATTTTAG
59958910 AATACAATCCTTTGA
1 AATACAATCCTTTGA
*
59958925 AATACAATTCTTTGA
1 AATACAATCCTTTGA
59958940 AA
1 AA
59958942 AGAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (15 bp):
AATACAATCCTTTGA
Found at i:59959078 original size:11 final size:12
Alignment explanation
Indices: 59959057--59959081 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59959047 ATTCGTCCTT
59959057 TTTTAAAAAAAA
1 TTTTAAAAAAAA
59959069 TTTTAAAAAAAA
1 TTTTAAAAAAAA
59959081 T
1 T
59959082 CATACATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TTTTAAAAAAAA
Found at i:59959465 original size:27 final size:26
Alignment explanation
Indices: 59959435--59959485 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
59959425 ATGAAATTCT
*
59959435 TACAAA-CAACATGATTGATTAACAATA
1 TACAAAGCAA-ATGA-TGAATAACAATA
59959462 TACAAAGCAAATGATGAATAACAA
1 TACAAAGCAAATGATGAATAACAA
59959486 ATTAATCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 9 0.41
27 10 0.45
28 3 0.14
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.22
Consensus pattern (26 bp):
TACAAAGCAAATGATGAATAACAATA
Found at i:59963253 original size:11 final size:12
Alignment explanation
Indices: 59963226--59963258 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
59963216 TTTTGAAAGG
59963226 AAGAAAAATAAA
1 AAGAAAAATAAA
*
59963238 GAGAAAAA-AAA
1 AAGAAAAATAAA
59963249 AAGAAAAATA
1 AAGAAAAATA
59963259 GATCTTATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (12 bp):
AAGAAAAATAAA
Found at i:59970286 original size:35 final size:35
Alignment explanation
Indices: 59970240--59970311 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
59970230 ACAGGCCCGG
*
59970240 GTTCCAATCCGGAGGACAATCCAACTAATCCTGTA
1 GTTCCAATCCGGAGGACAATCCAACCAATCCTGTA
* * *
59970275 GTTCCAATCCGGGGGACAATCTAACCAGTCCTGTA
1 GTTCCAATCCGGAGGACAATCCAACCAATCCTGTA
59970310 GT
1 GT
59970312 AGTGTCTGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (35 bp):
GTTCCAATCCGGAGGACAATCCAACCAATCCTGTA
Found at i:59974010 original size:50 final size:50
Alignment explanation
Indices: 59973900--59974075 Score: 142
Period size: 50 Copynumber: 3.5 Consensus size: 50
59973890 GGGAATGAGA
* * * * * **
59973900 TCCCATGTAGGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAAC
** *
59973950 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAAC
* * * * ** **
59974000 TCTCATGTAAGACCATATCTGGGATATGACATTAGCAGTACAGA--A-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCA-AGATGAGAAC
*
59974048 ATCCCATGTAAGACTATGTCTGGGACAT
1 -TCCCATGTAAGACCATGTCTGGGACAT
59974076 AGCTTTGGCA
Statistics
Matches: 99, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
48 3 0.03
49 24 0.24
50 70 0.71
51 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAAC
Found at i:59976351 original size:96 final size:96
Alignment explanation
Indices: 59976230--59976403 Score: 249
Period size: 96 Copynumber: 1.8 Consensus size: 96
59976220 TATTTCCCTA
* ** * *
59976230 AAGTTGCAGTGGAGTAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATT
1 AAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT
*
59976295 AAAGCTACAAACCACAAATCTTATACCCTTG
66 AAAGCCACAAACCACAAATCTTATACCCTTG
* * * **
59976326 AAGTTGCAGTGGGGCAGATTGAAGATAGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATT
1 AAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT
59976391 AAAGCCACAAACC
66 AAAGCCACAAACC
59976404 TTATCTCCCT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 67 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (96 bp):
AAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT
AAAGCCACAAACCACAAATCTTATACCCTTG
Found at i:59976373 original size:45 final size:45
Alignment explanation
Indices: 59976211--59976472 Score: 186
Period size: 45 Copynumber: 5.7 Consensus size: 45
59976201 AATCTACCAT
* * * * * *
59976211 AGCAAGTCTTATTTCCCTAAAGTTGCAGTGGAGTAGACTGAAGAT
1 AGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGAC
** * * * ** *
59976256 AGTGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTAC
1 AGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAG--AC
* * * *
59976303 AAACCACAAATCTTATAC-CCTTGAAGTTGCAGTGGGGCAGATTGAAGAT
1 --A--GCAAATCTTAT-CTCCTTGAAGTTGCAGTGGAGTAGATTGAAGAC
* *
59976352 AGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAGCC
1 AGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGAC
* * * * *
59976397 A-CAAACCTTATCTCCCTGCAGTTGCAGTAGAGTAAATTGAAGAC
1 AGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGAC
* * * *
59976441 AGCGAATCTTATTTTCTTAAAGTTGCAGTGGA
1 AGCAAATCTTATCTCCTTGAAGTTGCAGTGGA
59976473 ACAAATTAAA
Statistics
Matches: 167, Mismatches: 41, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
44 38 0.23
45 93 0.56
47 2 0.01
49 2 0.01
51 32 0.19
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (45 bp):
AGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGAC
Found at i:59976464 original size:89 final size:89
Alignment explanation
Indices: 59976324--59976607 Score: 306
Period size: 89 Copynumber: 3.2 Consensus size: 89
59976314 CTTATACCCT
** * * * * *
59976324 TGAAGTTGCAGTGGGGCAGATTGAAGATAGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGA
1 TGAAGTTGCAGTGAAGCAAATTGAAGATAGCAAATCTTATTTTCTTAAAGTTGCAGTGGAGCAGA
*
59976389 TTAAAGCCACAAACCTTATCTCCC
66 TTAAAGCTACAAACCTTATCTCCC
* * * * * *
59976413 TGCAGTTGCAGT-AGAGTAAATTGAAGACAGCGAATCTTATTTTCTTAAAGTTGCAGTGGAACAA
1 TGAAGTTGCAGTGA-AGCAAATTGAAGATAGCAAATCTTATTTTCTTAAAGTTGCAGTGGAGCAG
*
59976477 ATTAAAGCTACAAGCCTTATCTCCC
65 ATTAAAGCTACAAACCTTATCTCCC
* ** * * **
59976502 TAAAGTTGCAGTGAAGCAGGTTGAA-ATTA-AAAATCTTATCTTTC-TAAAGTTACAGCAGAGCA
1 TGAAGTTGCAGTGAAGCAAATTGAAGA-TAGCAAATCTTAT-TTTCTTAAAGTTGCAGTGGAGCA
*
59976564 GATTAAAGCTATAAACCTTATCTCCC
64 GATTAAAGCTACAAACCTTATCTCCC
59976590 TGAAGTTGCAGTGAAGCA
1 TGAAGTTGCAGTGAAGCA
59976608 GTTGCAGCGA
Statistics
Matches: 160, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
88 63 0.39
89 96 0.60
90 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (89 bp):
TGAAGTTGCAGTGAAGCAAATTGAAGATAGCAAATCTTATTTTCTTAAAGTTGCAGTGGAGCAGA
TTAAAGCTACAAACCTTATCTCCC
Found at i:59976540 original size:44 final size:44
Alignment explanation
Indices: 59976326--59976608 Score: 153
Period size: 44 Copynumber: 6.4 Consensus size: 44
59976316 TATACCCTTG
** * * * * * *
59976326 AAGTTGCAGTGGGGCAGATTGAAGATAGCAAATCTTATCTCCTTG
1 AAGTTGCAGTGAAGCAGATTAAAGCTA-AAAACCTTATCTCCCTA
* * * * *
59976371 AAGTTGCAGTGGAGTAGATTAAAGCCACAAACCTTATCTCCCTG
1 AAGTTGCAGTGAAGCAGATTAAAGCTAAAAACCTTATCTCCCTA
* * * * ** * * * *
59976415 CAGTTGCAGT-AGAGTAAATTGAAGAC-AGCGAATCTTATTTTCTTA
1 AAGTTGCAGTGA-AGCAGATTAAAG-CTA-AAAACCTTATCTCCCTA
* * *
59976460 AAGTTGCAGTGGAA-CAAATTAAAGCTACAAGCCTTATCTCCCTA
1 AAGTTGCAGT-GAAGCAGATTAAAGCTAAAAACCTTATCTCCCTA
* * * **
59976504 AAGTTGCAGTGAAGCAGGTTGAAA-TTAAAAATCTTATCTTTCTA
1 AAGTTGCAGTGAAGCAGATT-AAAGCTAAAAACCTTATCTCCCTA
* * * *
59976548 AAGTTACAG-CAGAGCAGATTAAAGCTATAAACCTTATCTCCCTG
1 AAGTTGCAGTGA-AGCAGATTAAAGCTAAAAACCTTATCTCCCTA
59976592 AAGTTGCAGTGAAGCAG
1 AAGTTGCAGTGAAGCAG
59976609 TTGCAGCGAA
Statistics
Matches: 182, Mismatches: 45, Indels: 23
0.73 0.18 0.09
Matches are distributed among these distances:
43 7 0.04
44 117 0.64
45 56 0.31
46 1 0.01
47 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (44 bp):
AAGTTGCAGTGAAGCAGATTAAAGCTAAAAACCTTATCTCCCTA
Found at i:59976584 original size:88 final size:88
Alignment explanation
Indices: 59976445--59976608 Score: 240
Period size: 88 Copynumber: 1.9 Consensus size: 88
59976435 GAAGACAGCG
* ** *
59976445 AATCTTATTTTCTTAAAGTTGCAGTGGAACAAATTAAAGCTACAAGCCTTATCTCCCTAAAGTTG
1 AATCTTATTTTCTTAAAGTTACAGCAGAACAAATTAAAGCTACAAACCTTATCTCCCTAAAGTTG
59976510 CAGTGAAGCAGGTTGAAATTAAA
66 CAGTGAAGCAGGTTGAAATTAAA
* * * *
59976533 AATCTTATCTTTC-TAAAGTTACAGCAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTT
1 AATCTTAT-TTTCTTAAAGTTACAGCAGAACAAATTAAAGCTACAAACCTTATCTCCCTAAAGTT
59976597 GCAGTGAAGCAG
65 GCAGTGAAGCAG
59976609 TTGCAGCGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
88 63 0.94
89 4 0.06
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (88 bp):
AATCTTATTTTCTTAAAGTTACAGCAGAACAAATTAAAGCTACAAACCTTATCTCCCTAAAGTTG
CAGTGAAGCAGGTTGAAATTAAA
Found at i:59982999 original size:30 final size:31
Alignment explanation
Indices: 59982944--59983045 Score: 102
Period size: 29 Copynumber: 3.4 Consensus size: 31
59982934 GGCCTAACTT
*
59982944 AAATTTTCAAAAAATCTAGAGGGTTTAATGA
1 AAATTTTCAAAAAAACTAGAGGGTTTAATGA
* * * *
59982975 GAATTTTCAAAAAAAGTTGA-GGTTTAATTA
1 AAATTTTCAAAAAAACTAGAGGGTTTAATGA
* * *
59983005 AAATTTT-AAAAAAATTA-AGGGCTTAAAGA
1 AAATTTTCAAAAAAACTAGAGGGTTTAATGA
*
59983034 AAATTTCCAAAA
1 AAATTTTCAAAA
59983046 TATTTGGGAG
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
28 1 0.02
29 21 0.37
30 19 0.33
31 16 0.28
ACGTcount: A:0.49, C:0.06, G:0.14, T:0.31
Consensus pattern (31 bp):
AAATTTTCAAAAAAACTAGAGGGTTTAATGA
Found at i:59989022 original size:5 final size:5
Alignment explanation
Indices: 59989012--59989042 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
59989002 TTATTTGTTT
59989012 TAATA TAATA TAATA TAATA TAATA T-ATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TA
59989043 CTTAATTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAATA
Found at i:60003402 original size:50 final size:50
Alignment explanation
Indices: 60003327--60003425 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
60003317 TACACCAAAA
*
60003327 TACCTCTTATTCCTTTGTCTCCATATCACATACAAATATGCATTCCAAGT
1 TACCTCTTATTCCTCTGTCTCCATATCACATACAAATATGCATTCCAAGT
* *
60003377 TACCTCTTGTTCCTCTGTCTCCATATCATATACAAATATGCATTCCAAG
1 TACCTCTTATTCCTCTGTCTCCATATCACATACAAATATGCATTCCAAG
60003426 CAAGCTTGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.27, C:0.28, G:0.07, T:0.37
Consensus pattern (50 bp):
TACCTCTTATTCCTCTGTCTCCATATCACATACAAATATGCATTCCAAGT
Found at i:60005848 original size:36 final size:36
Alignment explanation
Indices: 60005788--60005931 Score: 236
Period size: 36 Copynumber: 4.0 Consensus size: 36
60005778 TACGTATGAT
* *
60005788 CACTTATCAC-TTGTCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTCTTGATCAGATAAGTGTAGC
*
60005823 CACCTATCACTTTGTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTCTTGATCAGATAAGTGTAGC
*
60005859 CACTTATCACTTTGTTTTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTCTTGATCAGATAAGTGTAGC
60005895 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGT-TCTTGATCAGATAAGTGTAGC
60005932 TAAAGCTATC
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
35 9 0.09
36 72 0.71
37 20 0.20
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTTCTTGATCAGATAAGTGTAGC
Found at i:60005948 original size:46 final size:46
Alignment explanation
Indices: 60005895--60006254 Score: 392
Period size: 52 Copynumber: 7.6 Consensus size: 46
60005885 TAAGTGTAGC
* **
60005895 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
60005941 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
60005987 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
60006039 CAC-T-T-AC-TTGTCACTTGATCAGATAAGTATAG-CGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
60006080 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAG-CTAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
60006131 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
60006177 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
60006229 CACTTATCACTTT-TCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
60006255 AGTACTCAAA
Statistics
Matches: 273, Mismatches: 18, Indels: 47
0.81 0.05 0.14
Matches are distributed among these distances:
41 11 0.04
42 25 0.09
43 1 0.00
44 2 0.01
45 37 0.14
46 72 0.26
48 1 0.00
49 4 0.01
50 2 0.01
51 42 0.15
52 76 0.28
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:60006146 original size:190 final size:194
Alignment explanation
Indices: 60005906--60006254 Score: 598
Period size: 190 Copynumber: 1.8 Consensus size: 194
60005896 ACTTATCACT
* *
60005906 TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
* *
60005971 GTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
66 GTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGC
*
60006036 TATCAC-T-T-ACTTGTCACTTGATCAGATAAGTATAGCGAAGCTATTACTTATCACTTTCCAC
131 TACCACTTATCACTTGTCACTTGATCAGATAAGTATAGCGAAGCTATTACTTATCACTTTCCAC
60006097 TTGTCACTTGATCAGATAAGTGTAGCT-AAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
* *
60006161 GTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
66 GTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGC
*
60006226 TACCACTTATCACTTTTCACTTGATCAGA
131 TACCACTTATCACTTGTCACTTGATCAGA
60006255 AGTACTCAAA
Statistics
Matches: 147, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
190 102 0.69
191 27 0.18
192 1 0.01
193 17 0.12
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (194 bp):
TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGC
TACCACTTATCACTTGTCACTTGATCAGATAAGTATAGCGAAGCTATTACTTATCACTTTCCAC
Found at i:60009493 original size:67 final size:66
Alignment explanation
Indices: 60009385--60009512 Score: 220
Period size: 67 Copynumber: 1.9 Consensus size: 66
60009375 ATGCCATAGT
*
60009385 CCAACTATGGTCTTACACGTAATCACAAATCACATACCGATGCCATAGCCCAACTATGGTCTATG
1 CCAACTATGGTCTTACACGAAATCACAAATCACATACCGATGCCATAGCCC-ACTATGGTCTATG
60009450 GC
65 GC
* *
60009452 CCAACTATGGTCTTACACGAAATCACATATCACTTACCGATGCCATAGCCCACTATGGTCT
1 CCAACTATGGTCTTACACGAAATCACAAATCACATACCGATGCCATAGCCCACTATGGTCT
60009513 TACACGGAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
66 10 0.17
67 48 0.83
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (66 bp):
CCAACTATGGTCTTACACGAAATCACAAATCACATACCGATGCCATAGCCCACTATGGTCTATGG
C
Found at i:60009524 original size:48 final size:48
Alignment explanation
Indices: 60009450--60009591 Score: 167
Period size: 57 Copynumber: 2.7 Consensus size: 48
60009440 ATGGTCTATG
*
60009450 GCCCAACTATGGTCTTACACGAAATCACATATCACTTACCGATGCCATA
1 GCCC-ACTATGGTCTTACACGGAATCACATATCACTTACCGATGCCATA
60009499 GCCCACTATGGTCTTACACGGAATCACATATCACACATATCACTTACCGATGCCATA
1 GCCCACTATGGTCTTACACGG------A-AT--CACATATCACTTACCGATGCCATA
60009556 GCCCAGCTATGGTCTTACACGGAATCACATAATCAC
1 GCCCA-CTATGGTCTTACACGGAATCACAT-ATCAC
60009592 ATGTTCACAT
Statistics
Matches: 81, Mismatches: 1, Indels: 21
0.79 0.01 0.20
Matches are distributed among these distances:
48 16 0.20
49 9 0.11
50 5 0.06
51 2 0.02
52 1 0.01
54 1 0.01
55 2 0.02
57 29 0.36
58 16 0.20
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (48 bp):
GCCCACTATGGTCTTACACGGAATCACATATCACTTACCGATGCCATA
Found at i:60009540 original size:57 final size:59
Alignment explanation
Indices: 60009475--60009592 Score: 222
Period size: 57 Copynumber: 2.0 Consensus size: 59
60009465 TACACGAAAT
60009475 CACATATCACTTACCGATGCCATAGCCCA-CTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
60009532 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
60009591 CA
1 CA
60009593 TGTTCACATG
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
57 29 0.49
58 24 0.41
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:60010905 original size:37 final size:37
Alignment explanation
Indices: 60010844--60010979 Score: 204
Period size: 37 Copynumber: 3.7 Consensus size: 37
60010834 TACGTATGAT
**
60010844 CACTTATCAC-TTGTCAC-TGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
60010879 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
60010916 CACTTATCACTTTGTTTATTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
**
60010953 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTTTCTTGATCAGA
60010980 AGTACTCAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
35 9 0.10
36 5 0.05
37 77 0.85
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:60013878 original size:27 final size:27
Alignment explanation
Indices: 60013848--60013903 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
60013838 AAACAACAAA
60013848 CATCAATCTTAAATCTAACTAACCTAT
1 CATCAATCTTAAATCTAACTAACCTAT
* *
60013875 CATCAATTTTCAATCTAACTAACCTAT
1 CATCAATCTTAAATCTAACTAACCTAT
60013902 CA
1 CA
60013904 ATTATAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (27 bp):
CATCAATCTTAAATCTAACTAACCTAT
Found at i:60020107 original size:32 final size:32
Alignment explanation
Indices: 60020068--60020131 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
60020058 GTAGATAAAT
60020068 ATTTTATTAATTTAATAAGATTTAATATGAAA
1 ATTTTATTAATTTAATAAGATTTAATATGAAA
60020100 ATTTTATTAATTTAATAAGATTTAATATGAAA
1 ATTTTATTAATTTAATAAGATTTAATATGAAA
60020132 TTTAATCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (32 bp):
ATTTTATTAATTTAATAAGATTTAATATGAAA
Found at i:60027540 original size:28 final size:26
Alignment explanation
Indices: 60027488--60027542 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 26
60027478 ATATAAATTG
60027488 AAAATAAAAATAACAAATTTAGTTAA
1 AAAATAAAAATAACAAATTTAGTTAA
* *
60027514 AAAATAAAACATAAATAAATTTGGTTAA
1 AAAATAAAA-AT-AACAAATTTAGTTAA
60027542 A
1 A
60027543 TTTTTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.36
27 2 0.08
28 14 0.56
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (26 bp):
AAAATAAAAATAACAAATTTAGTTAA
Found at i:60038485 original size:20 final size:20
Alignment explanation
Indices: 60038457--60038494 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60038447 AGAAAGAAAG
60038457 GAAAAAAAAGAA-AAATTAAA
1 GAAAAAAAA-AAGAAATTAAA
*
60038477 GAAATAAAAAAGAAATTA
1 GAAAAAAAAAAGAAATTA
60038495 GAACATTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (20 bp):
GAAAAAAAAAAGAAATTAAA
Found at i:60041772 original size:5 final size:5
Alignment explanation
Indices: 60041762--60041787 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
60041752 AAAACATGAT
60041762 AAATA AAATA AAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA A
60041788 TTCATACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:60043027 original size:12 final size:12
Alignment explanation
Indices: 60043010--60043034 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60043000 TAAACTGTTT
60043010 TTATTATTACTA
1 TTATTATTACTA
60043022 TTATTATTACTA
1 TTATTATTACTA
60043034 T
1 T
60043035 AATGATGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:60043496 original size:29 final size:28
Alignment explanation
Indices: 60043447--60043537 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 28
60043437 ATTTCTATAG
* *
60043447 TTTTTTAT-ACTTTAATTTTTTTTTTAT
1 TTTTTTATAACTTTTATATTTTTTTTAT
**
60043474 TTTTTTAATAACTTTTATATTTTTCCTAT
1 TTTTTT-ATAACTTTTATATTTTTTTTAT
60043503 ATTTTTTATAA-TTTT-TATTTTATTTTAT
1 -TTTTTTATAACTTTTATATTTT-TTTTAT
60043531 TTATTTT
1 TT-TTTT
60043538 CATTTTTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
27 14 0.26
28 14 0.26
29 19 0.36
30 6 0.11
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTTTTATAACTTTTATATTTTTTTTAT
Found at i:60043550 original size:10 final size:9
Alignment explanation
Indices: 60043466--60043553 Score: 58
Period size: 9 Copynumber: 9.4 Consensus size: 9
60043456 CTTTAATTTT
60043466 TTTTTTAT-
1 TTTTTTATA
60043474 TTTTTTAATA
1 TTTTTT-ATA
**
60043484 ACTTTTATA
1 TTTTTTATA
60043493 TTTTTCCTATA
1 TTTTT--TATA
60043504 TTTTTTATA
1 TTTTTTATA
*
60043513 ATTTTTAT-
1 TTTTTTATA
60043521 TTTATTT-TA
1 TTT-TTTATA
60043530 TTTATTT-TCA
1 TTT-TTTAT-A
60043540 TTTTTTATCA
1 TTTTTTAT-A
60043550 TTTT
1 TTTT
60043554 CACTACTTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
8 9 0.14
9 33 0.50
10 15 0.23
11 9 0.14
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTTTATA
Found at i:60043684 original size:9 final size:10
Alignment explanation
Indices: 60043658--60043683 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
60043648 AAATTTAAAA
60043658 TATTTTTATT
1 TATTTTTATT
60043668 TATTTTTATT
1 TATTTTTATT
60043678 TATTTT
1 TATTTT
60043684 AATATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (10 bp):
TATTTTTATT
Found at i:60045192 original size:34 final size:35
Alignment explanation
Indices: 60045134--60045200 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
60045124 CAAACACCAG
60045134 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
60045169 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
60045201 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:60046658 original size:29 final size:29
Alignment explanation
Indices: 60046610--60046666 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
60046600 TTTTAGGTTA
*
60046610 TTATTATTTTAAATATATATAATATAAAC
1 TTATTATTTTAAATATATATAAAATAAAC
60046639 TTATATATTTATAAA-A-ATATAAAATAAA
1 TTAT-TATTT-TAAATATATATAAAATAAA
60046667 TACAATTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 15 0.60
30 6 0.24
31 4 0.16
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (29 bp):
TTATTATTTTAAATATATATAAAATAAAC
Found at i:60046748 original size:15 final size:16
Alignment explanation
Indices: 60046710--60046750 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
60046700 TTTGAAAACT
60046710 AAATTAAAA-AATATA
1 AAATTAAAATAATATA
*
60046725 ATATATAAAATAATA-A
1 AAAT-TAAAATAATATA
60046741 AAATTAAAAT
1 AAATTAAAAT
60046751 TTTAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 9 0.41
17 4 0.18
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATTAAAATAATATA
Found at i:60046768 original size:35 final size:40
Alignment explanation
Indices: 60046709--60046795 Score: 112
Period size: 35 Copynumber: 2.3 Consensus size: 40
60046699 TTTTGAAAAC
* * *
60046709 TAAATTAAAAAATATAATATATAAAATAA-TAAAAA-TTA
1 TAAATTTATAAATATAATATATAAAAGAATTAAAAATTTA
60046747 -AAATTT-TAAATA-AATATATAAAAGAATTAAAAATTTA
1 TAAATTTATAAATATAATATATAAAAGAATTAAAAATTTA
60046784 TAAATTTATAAA
1 TAAATTTATAAA
60046796 ATTTATAACT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
35 13 0.31
36 11 0.26
37 8 0.19
38 6 0.14
39 4 0.10
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (40 bp):
TAAATTTATAAATATAATATATAAAAGAATTAAAAATTTA
Found at i:60046774 original size:29 final size:27
Alignment explanation
Indices: 60046742--60046796 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
60046732 AAATAATAAA
*
60046742 AATTAAAATTTTAAATAAATATATAAAAG
1 AATTAAAAATTT--ATAAATATATAAAAG
*
60046771 AATTAAAAATTTATAAATTTATAAAA
1 AATTAAAAATTTATAAATATATAAAA
60046797 TTTATAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 13 0.54
29 11 0.46
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (27 bp):
AATTAAAAATTTATAAATATATAAAAG
Found at i:60046940 original size:24 final size:25
Alignment explanation
Indices: 60046887--60046941 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
60046877 TTTATTAATT
60046887 TATATATTTTAAATTTTCAAAAAAA
1 TATATATTTTAAATTTTCAAAAAAA
* *
60046912 TATAT-TTTTAAGTTTT-AAAATAA
1 TATATATTTTAAATTTTCAAAAAAA
60046935 TAATATA
1 T-ATATA
60046942 AATGGGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 7 0.27
24 14 0.54
25 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (25 bp):
TATATATTTTAAATTTTCAAAAAAA
Found at i:60053480 original size:17 final size:18
Alignment explanation
Indices: 60053458--60053518 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
60053448 TCATTGGTGC
60053458 ATATATATAAACTAT-TA
1 ATATATATAAACTATATA
* *
60053475 ATATATTATATACTATATG
1 ATATA-TATAAACTATATA
*
60053494 ATATGATATAACATTATATA
1 ATAT-ATATAA-ACTATATA
60053514 ATATA
1 ATATA
60053519 GTAGGATGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.14
18 9 0.26
19 10 0.29
20 11 0.31
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATATATAAACTATATA
Found at i:60053658 original size:239 final size:226
Alignment explanation
Indices: 60053181--60053706 Score: 578
Period size: 234 Copynumber: 2.3 Consensus size: 226
60053171 ATATGTTACA
* * *
60053181 ATAA-AAAAAATATAGTATTACATGATATTATAATCTTTAATCATTGATGCATATATATAAACTA
1 ATAATAAAAGATATAATATTACAT-ATATTATAATGTTTAATCATTGATGCATATATATAAACTA
* * **
60053245 TTAATATATGATATGATATGATATAACATTATATAATATAGTAGGAGGGTTATTTTTTTAGTGTA
65 TTAATATATGATATGATATGATATAACATTATATAATATAGTAGGAGGGCTACTTTCATAGTGTA
* * * * *
60053310 CGAAAAGTATAGACTTGGAGCATATTTCAACTAGCATAATAACAAACAATAATATATGATGTACT
130 CAAAAACTATAGACTTAGAGCATATTTCAACCAGCATAATAACAAACAATAATATATGATGTAAT
* *
60053375 AGTACTATTATATATAACTATTATTATAATTT
195 AGTAATATTATATATAACTATTATTATAATAT
*
60053407 ATAATAAAAGATATAATATTACATAATATTATAATGTTTAATCATTGGTGCATATATATAAACTA
1 ATAATAAAAGATATAATATTACAT-ATATTATAATGTTTAATCATTGATGCATATATATAAACTA
* *
60053472 TTAATATATTATATACTATATGATATGATATAACATTATATAATATAGTAGGATGGCTACCTTTC
65 -T--TA-A-TATAT--GATATGATATGATATAACATTATATAATATAGTAGGAGGGCTA-CTTTC
* *
60053537 ATA-TGTACAAAAACTATAGGGACTTAGAGCATATTTCAACCAGTATAATAATAAACAATAATAT
122 ATAGTGTACAAAAACTATA--GACTTAGAGCATATTTCAACCAGCATAATAACAAACAATAATAT
* * *
60053601 ATG-T-TAATAATTAATATATAATGTATTACTATTAGATTATAGA-AT
185 ATGATGTAAT-AGTAATAT-T-ATATATAACTATT--ATTATA-ATAT
** * * * * **
60053646 ATAATAAAAGATACCATGTTACAT-TATTTTAAAGTTCAATCATTGAACCATATATATAAAC
1 ATAATAAAAGATATAATATTACATATATTATAATGTTTAATCATTGATGCATATATATAAAC
60053707 CAATGGCGAA
Statistics
Matches: 251, Mismatches: 32, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
226 4 0.02
227 55 0.22
228 1 0.00
230 2 0.01
231 1 0.00
232 5 0.02
234 56 0.22
235 12 0.05
236 44 0.18
237 42 0.17
239 28 0.11
240 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (226 bp):
ATAATAAAAGATATAATATTACATATATTATAATGTTTAATCATTGATGCATATATATAAACTAT
TAATATATGATATGATATGATATAACATTATATAATATAGTAGGAGGGCTACTTTCATAGTGTAC
AAAAACTATAGACTTAGAGCATATTTCAACCAGCATAATAACAAACAATAATATATGATGTAATA
GTAATATTATATATAACTATTATTATAATAT
Found at i:60055050 original size:23 final size:23
Alignment explanation
Indices: 60055009--60055071 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
60054999 GGTATGTATT
*
60055009 AAAATAAAATGAATTATTATCTT-C
1 AAAATTAAAT-AATTATTA-CTTAC
*
60055033 AAAATTAAATAATTATTACTTAT
1 AAAATTAAATAATTATTACTTAC
*
60055056 AAAATTTAA-AATTATT
1 AAAATTAAATAATTATT
60055072 TGAATCTGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.29
23 16 0.46
24 9 0.26
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (23 bp):
AAAATTAAATAATTATTACTTAC
Found at i:60056662 original size:23 final size:23
Alignment explanation
Indices: 60056627--60056674 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
60056617 AGCTGCAATC
** *
60056627 TTTTTTTTTCTATTTTCTTGTTA
1 TTTTTTTCACTATTATCTTGTTA
*
60056650 TTTTTTTCACTATTATGTTGTTA
1 TTTTTTTCACTATTATCTTGTTA
60056673 TT
1 TT
60056675 ATATAACTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.73
Consensus pattern (23 bp):
TTTTTTTCACTATTATCTTGTTA
Found at i:60065999 original size:11 final size:11
Alignment explanation
Indices: 60065979--60066008 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
60065969 TAAAAAATAA
60065979 AAAAAGTATTTT
1 AAAAA-TATTTT
60065991 AAAAATATTTT
1 AAAAATATTTT
60066002 AAAAATA
1 AAAAATA
60066009 AAAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:60068085 original size:16 final size:16
Alignment explanation
Indices: 60068049--60068088 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
60068039 AGTTTTATTC
*
60068049 AATTACAACTCTATCT
1 AATTACAGCTCTATCT
*
60068065 AATTACAGCTCTATTT
1 AATTACAGCTCTATCT
*
60068081 TATTACAG
1 AATTACAG
60068089 TGAACCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.05, T:0.40
Consensus pattern (16 bp):
AATTACAGCTCTATCT
Found at i:60072533 original size:778 final size:778
Alignment explanation
Indices: 60071039--60072589 Score: 2579
Period size: 778 Copynumber: 2.0 Consensus size: 778
60071029 CACTTGACAC
* * *
60071039 TTGTTGGGATAGAACTCAAATAGAACATGATTGTCCTTCGCAAATTTCGACACAGACAGGAGGTT
1 TTGTTGGGAAAGAACTCAAACAAAACATGATTGTCCTTCGCAAATTTCGACACAGACAGGAGGTT
* * * * *
60071104 TTTAGTGATGTTAGGTATAAATAAAAGAGTTACATATAAAGTGGACGAGAACAAGTGAGTAAGGA
66 TTTAGTGATGTTAGGCACAAATAAAAGAGTCACAGATAAAGTGGACGAGAACAAGTGAGTAAGAA
*
60071169 TGATTGACCAGTGCGAATAATAGGTAGACCAGCACCATTACCCACATATACCATACTTGAACCAT
131 TGATTGACCAGTGCGAATAATAGGTAGACCAGCACCATTACCCACATATACCATACCTGAACCAT
* *
60071234 TATAAGGAGTGTTATAACTCATTGAAGTAACAAAATGAGTAGGATGATGAGTAACCTCAGAATCA
196 TATAAGGAGTGTTATAACTCATTGAAGCAACAAAATGAGTAAGATGATGAGTAACCTCAGAATCA
60071299 GGAAACCAGACATGGTCTCCTACAGTGTCTGGAGTGGCAACATAAGCTTGTGAGTTGGATGATAG
261 GGAAACCAGACATGGTCTCCTACAGTGTCTGGAGTGGCAACATAAGCTTGTGAGTTGGATGATAG
* *
60071364 TGCAGGCATTTGTTATGTAGATGTAGGAGATGAGCGTGACTAATGTTGCGATGGTGGAAATGAGG
326 TGCAAGCATTTGTTATGTAGATGTAGGAGATGAGCGTGACCAATGTTGCGATGGTGGAAATGAGG
* * * *
60071429 AACCCCAACTGTCTTGAGAGTTCAACACCAGAGAAAAAACTGGTAAATGGGAGCTATATGGAGGC
391 AACCCCAACTATCTTGAGAGTTCAACACCAGAGAAAAAACTAGTAAATGAGAGCTATATAGAGGC
* *
60071494 ATTCAAGGCATGGATACTCCATTACCAAACATGCACATGTTAGCTTATGGAGGAAGCTGAGAAGC
456 ATTCAAGGCATGGATACTCCATTACCAAAAATGCACATGTTAGCTTATGAAGGAAGCTGAGAAGC
* *
60071559 TGTACTCTTGTATGTAGTGTCAAATCGATGATAACAACGATCCACAAGATGACCAATTTTTCCTT
521 TGTACTCTTGTATGTAGTGTCAAATCGATGATAACAACGATCCACAAGATGACCAATTTTCCCTC
* ** *
60071624 ATAGTTGACATTGAATACGTGAGCTAAATGAGTGTCCATGTCCACGACCACGTCTAGAAGCATAG
586 AGAGTTGACATTGAATACGTGAGCTAAATGAGTGTCCACATCCACGACCACGTCCAGAAGCATAG
*
60071689 GTGAGACAATATAGTGGCGGTTGAGTACTAGTAGCAGAGTCAACTGACTGAGTGGTAACTATATT
651 GTGAGACAATATAGTGGCGGTTGAGTACTAGCAGCAGAGTCAACTGACTGAGTGGTAACTATATT
*
60071754 GGTAGAGCTAAACACATCAACCAACGTAGTTTGTAATCTGGCTTCAGCGTCAAGAAGCGTAGT
716 GGTAGAGCGAAACACATCAACCAACGTAGTTTGTAATCTGGCTTCAGCGTCAAGAAGCGTAGT
*
60071817 TTGTTGGGAAAGAACTCAAACAAAACCTGATTGTCCTTCGCAAATTTCGACACAGACAGGAGGTT
1 TTGTTGGGAAAGAACTCAAACAAAACATGATTGTCCTTCGCAAATTTCGACACAGACAGGAGGTT
*
60071882 TTTAGTGATGTTAGGCACAAATAAAAGAGATCGCAGATAAAGTGGACGAGAACAAGTGAGTAAGA
66 TTTAGTGATGTTAGGCACAAATAAAAGAG-TCACAGATAAAGTGGACGAGAACAAGTGAGTAAGA
60071947 ATGATTGACCAGTGCGAATAATAGGTAGACCAGCACCATTACCCACATATACCATACCTGAACCA
130 ATGATTGACCAGTGCGAATAATAGGTAGACCAGCACCATTACCCACATATACCATACCTGAACCA
* * * *
60072012 TTATAGGGAGTGTTGTCACTCATTGAAGCAACAAAATGAGTAAGATGATGAGTAGCC-CTAGAAT
195 TTATAAGGAGTGTTATAACTCATTGAAGCAACAAAATGAGTAAGATGATGAGTAACCTC-AGAAT
* * * *
60072076 C-GAGATACTAGGCATTGTCTCCTACAGTGTCTGGAGTGGCAACATAAGCTTGTGAGTTGGATGA
259 CAG-GAAACCAGACATGGTCTCCTACAGTGTCTGGAGTGGCAACATAAGCTTGTGAGTTGGATGA
* * *
60072140 TGGTGCAAGCATTTGTTGTGTAGATGTAGGAGATGAGTGTGACCAAT-TTGCGATGGTGGAAATG
323 TAGTGCAAGCATTTGTTATGTAGATGTAGGAGATGAGCGTGACCAATGTTGCGATGGTGGAAATG
* *
60072204 AGGAACCCTAACTATCTTGAGAGTTCAACACCAGAGAAAAAACTAGTAAATGAGAGTTATATAGA
388 AGGAACCCCAACTATCTTGAGAGTTCAACACCAGAGAAAAAACTAGTAAATGAGAGCTATATAGA
* * * *
60072269 GGCATTCAAGGCATGGATACTCTATTACCAAAAATGCACATGTTAGCTTGTGAAGGAGGCTGATA
453 GGCATTCAAGGCATGGATACTCCATTACCAAAAATGCACATGTTAGCTTATGAAGGAAGCTGAGA
*
60072334 AGCTGTACTCTTGTATGTAGTGTCAAATCGATGATAACAATGATCCACAAGATGACCAATTTTCC
518 AGCTGTACTCTTGTATGTAGTGTCAAATCGATGATAACAACGATCCACAAGATGACCAATTTTCC
* *
60072399 CTCAGAGTTGACATTGAATACGTGAGCTAGATGAGTGTCCACATCCACGACCATGTCCAGAAGCA
583 CTCAGAGTTGACATTGAATACGTGAGCTAAATGAGTGTCCACATCCACGACCACGTCCAGAAGCA
*
60072464 TAGGCTG-GACAATATAGTGGTGGTTGAGTACTAGCAGCAGAGTCAACTGACTGAGTGGTAACTA
648 TAGG-TGAGACAATATAGTGGCGGTTGAGTACTAGCAGCAGAGTCAACTGACTGAGTGGTAACTA
*
60072528 TATTGGTAGAGCGAAACACATCAACCAACGTAGTTTGTAATTTGGCTTCAGCGTCAAGAAGC
712 TATTGGTAGAGCGAAACACATCAACCAACGTAGTTTGTAATCTGGCTTCAGCGTCAAGAAGC
60072590 ATAATTGTAA
Statistics
Matches: 718, Mismatches: 51, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
778 465 0.65
779 253 0.35
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (778 bp):
TTGTTGGGAAAGAACTCAAACAAAACATGATTGTCCTTCGCAAATTTCGACACAGACAGGAGGTT
TTTAGTGATGTTAGGCACAAATAAAAGAGTCACAGATAAAGTGGACGAGAACAAGTGAGTAAGAA
TGATTGACCAGTGCGAATAATAGGTAGACCAGCACCATTACCCACATATACCATACCTGAACCAT
TATAAGGAGTGTTATAACTCATTGAAGCAACAAAATGAGTAAGATGATGAGTAACCTCAGAATCA
GGAAACCAGACATGGTCTCCTACAGTGTCTGGAGTGGCAACATAAGCTTGTGAGTTGGATGATAG
TGCAAGCATTTGTTATGTAGATGTAGGAGATGAGCGTGACCAATGTTGCGATGGTGGAAATGAGG
AACCCCAACTATCTTGAGAGTTCAACACCAGAGAAAAAACTAGTAAATGAGAGCTATATAGAGGC
ATTCAAGGCATGGATACTCCATTACCAAAAATGCACATGTTAGCTTATGAAGGAAGCTGAGAAGC
TGTACTCTTGTATGTAGTGTCAAATCGATGATAACAACGATCCACAAGATGACCAATTTTCCCTC
AGAGTTGACATTGAATACGTGAGCTAAATGAGTGTCCACATCCACGACCACGTCCAGAAGCATAG
GTGAGACAATATAGTGGCGGTTGAGTACTAGCAGCAGAGTCAACTGACTGAGTGGTAACTATATT
GGTAGAGCGAAACACATCAACCAACGTAGTTTGTAATCTGGCTTCAGCGTCAAGAAGCGTAGT
Found at i:60073403 original size:28 final size:27
Alignment explanation
Indices: 60073363--60073417 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
60073353 TAAAATTGCT
60073363 AAGTTGTTCAACAAACTAACTTCTTTAA
1 AAGTTGTTCAAC-AACTAACTTCTTTAA
* * * *
60073391 AAGTTTTTTAACAGCTAGCTTCTTTAA
1 AAGTTGTTCAACAACTAACTTCTTTAA
60073418 CAGTCTAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (27 bp):
AAGTTGTTCAACAACTAACTTCTTTAA
Found at i:60073418 original size:16 final size:17
Alignment explanation
Indices: 60073397--60073429 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
60073387 TTAAAAGTTT
60073397 TTTAACAG-CTAGCTTC
1 TTTAACAGTCTAGCTTC
60073413 TTTAACAGTCTAGCTTC
1 TTTAACAGTCTAGCTTC
60073430 AGAACTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (17 bp):
TTTAACAGTCTAGCTTC
Found at i:60073514 original size:14 final size:16
Alignment explanation
Indices: 60073490--60073525 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
60073480 TATTTACTCT
60073490 AAAAATCATTT-TTAA
1 AAAAATCATTTATTAA
60073505 AAAAAT-ATTTATTAA
1 AAAAATCATTTATTAA
60073520 AAAAAT
1 AAAAAT
60073526 TTAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAAATCATTTATTAA
Found at i:60074059 original size:2 final size:2
Alignment explanation
Indices: 60074052--60074077 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60074042 TAATTATCTC
60074052 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
60074078 AAAAAAACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:60082287 original size:25 final size:25
Alignment explanation
Indices: 60082251--60082305 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
60082241 TTAAATAAGT
60082251 ATAAATATTTTTAGTTG-ATATTTTA
1 ATAAATATTTTTAG-TGAATATTTTA
60082276 ATAAA-ATGTTTTAGTGAATATTTTA
1 ATAAATAT-TTTTAGTGAATATTTTA
60082301 ATAAA
1 ATAAA
60082306 GAAGCTTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (25 bp):
ATAAATATTTTTAGTGAATATTTTA
Found at i:60082645 original size:11 final size:11
Alignment explanation
Indices: 60082628--60082661 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
60082618 TTTAAAAGAA
60082628 AGGTATTTTTT
1 AGGTATTTTTT
*
60082639 GGGTATTTTTT
1 AGGTATTTTTT
*
60082650 ATGTATTTTTT
1 AGGTATTTTTT
60082661 A
1 A
60082662 AAGGTAGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.65
Consensus pattern (11 bp):
AGGTATTTTTT
Found at i:60090473 original size:15 final size:15
Alignment explanation
Indices: 60090453--60090488 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
60090443 TCTTTTTATC
*
60090453 ATTATTATTATTGCT
1 ATTATTATTATTCCT
60090468 ATTATTATTATTCCT
1 ATTATTATTATTCCT
60090483 ATTATT
1 ATTATT
60090489 TCATGTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (15 bp):
ATTATTATTATTCCT
Found at i:60099841 original size:18 final size:19
Alignment explanation
Indices: 60099806--60099845 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
60099796 TTAATTTTAG
*
60099806 TTTTCACAATTTCCTTAAA
1 TTTTCACAATTTCATTAAA
*
60099825 TTTTCAC-ATTTTATTAAA
1 TTTTCACAATTTCATTAAA
60099843 TTT
1 TTT
60099846 AATCCCTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTCACAATTTCATTAAA
Found at i:60108204 original size:9 final size:9
Alignment explanation
Indices: 60108190--60108306 Score: 144
Period size: 9 Copynumber: 12.6 Consensus size: 9
60108180 TTTGGTTAAA
60108190 AATTACCCG
1 AATTACCCG
60108199 AATTACCCG
1 AATTACCCG
60108208 AATTACCCG
1 AATTACCCG
*
60108217 ACTTACCCG
1 AATTACCCG
60108226 AATTACCCG
1 AATTACCCG
* *
60108235 ACTTATCCG
1 AATTACCCG
60108244 AATTACCCG
1 AATTACCCG
*
60108253 AATTACCTG
1 AATTACCCG
* *
60108262 AAAATTACTCA
1 --AATTACCCG
60108273 AATTACCCG
1 AATTACCCG
60108282 AATTACCCG
1 AATTACCCG
60108291 AAAATTACCCG
1 --AATTACCCG
60108302 AATTA
1 AATTA
60108307 AATCACTACA
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
9 77 0.84
11 15 0.16
ACGTcount: A:0.36, C:0.30, G:0.09, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:60108335 original size:17 final size:17
Alignment explanation
Indices: 60108313--60108373 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
60108303 ATTAAATCAC
60108313 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
60108330 TACATAAATCTTTGAATCAC
1 TACAT-AA--TTAAAAACAT
*
60108350 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
60108367 TACATAA
1 TACATAA
60108374 GTCTTTGAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 17 0.53
18 2 0.06
19 2 0.06
20 11 0.34
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:60108355 original size:20 final size:20
Alignment explanation
Indices: 60108330--60108393 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
60108320 TTAAAAACAT
60108330 TACATAAATCTTTGAATCAC
1 TACATAAATCTTTGAATCAC
*** *
60108350 TACAT-AAT-TAAAAAT-AT
1 TACATAAATCTTTGAATCAC
*
60108367 TACATAAGTCTTTGAATCAC
1 TACATAAATCTTTGAATCAC
60108387 TACATAA
1 TACATAA
60108394 TTAAAAATAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 7 0.22
20 13 0.41
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (20 bp):
TACATAAATCTTTGAATCAC
Found at i:60108413 original size:37 final size:37
Alignment explanation
Indices: 60108307--60108419 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
60108297 ACCCGAATTA
* *
60108307 AATCACTACATAATTAAAAACATTACATAAATCTTTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
60108344 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
*
60108381 AATCACTACATAATTAAAAATATTACACAAGTC-TTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
60108417 AAT
1 AAT
60108420 TAAAACATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 6 0.08
37 67 0.92
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (37 bp):
AATCACTACATAATTAAAAATATTACATAAGTCTTTG
Found at i:60108487 original size:24 final size:24
Alignment explanation
Indices: 60108460--60108518 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
60108450 ATTCTCCATT
*
60108460 TATATCCATTTCATCTTTCCAAAA
1 TATATCCATTTCATCTCTCCAAAA
*
60108484 TATATTCATTTCATCTCTCCAAAA
1 TATATCCATTTCATCTCTCCAAAA
*
60108508 TATCTCCATTT
1 TATATCCATTT
60108519 GCATTAAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (24 bp):
TATATCCATTTCATCTCTCCAAAA
Found at i:60111600 original size:16 final size:16
Alignment explanation
Indices: 60111579--60111612 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
60111569 TTTTTTTTCT
*
60111579 TACATTAATTATAATA
1 TACATTAATTACAATA
60111595 TACATTAATTACAATA
1 TACATTAATTACAATA
60111611 TA
1 TA
60111613 TTCAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (16 bp):
TACATTAATTACAATA
Found at i:60112530 original size:16 final size:17
Alignment explanation
Indices: 60112509--60112549 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
60112499 GCCTAAGAGA
60112509 AAATTGGGCT-GGATTT
1 AAATTGGGCTGGGATTT
*
60112525 AAATTGGGCTGGGTTTT
1 AAATTGGGCTGGGATTT
60112542 AAATTGGG
1 AAATTGGG
60112550 AGGGAGTAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.24, C:0.05, G:0.34, T:0.37
Consensus pattern (17 bp):
AAATTGGGCTGGGATTT
Found at i:60113715 original size:18 final size:18
Alignment explanation
Indices: 60113678--60113721 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
60113668 AATTAAAAAT
60113678 ATAATAATGATAATGATA
1 ATAATAATGATAATGATA
*
60113696 ATGATAATGATAAT-ATTA
1 ATAATAATGATAATGA-TA
60113714 ATAATAAT
1 ATAATAAT
60113722 ACTAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (18 bp):
ATAATAATGATAATGATA
Found at i:60113720 original size:3 final size:3
Alignment explanation
Indices: 60113678--60113737 Score: 57
Period size: 3 Copynumber: 19.7 Consensus size: 3
60113668 AATTAAAAAT
* * * * * *
60113678 ATA ATA ATG ATA ATG ATA ATG ATA ATG ATA ATA TTA ATA ATA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
60113726 ATA ATAA ATA AT
1 ATA AT-A ATA AT
60113738 TTAGAGTTTA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:60113792 original size:17 final size:18
Alignment explanation
Indices: 60113753--60113800 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
60113743 GTTTAAAAAA
60113753 ATAA-AAATAAAA-AGAT
1 ATAATAAATAAAACAGAT
60113769 ATAAATAAATAAAACA-AT
1 AT-AATAAATAAAACAGAT
*
60113787 ATAATAAATTAAAC
1 ATAATAAATAAAAC
60113801 GTGTTTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 2 0.07
17 13 0.46
18 12 0.43
19 1 0.04
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (18 bp):
ATAATAAATAAAACAGAT
Found at i:60115625 original size:96 final size:95
Alignment explanation
Indices: 60115501--60115815 Score: 339
Period size: 96 Copynumber: 3.4 Consensus size: 95
60115491 TTTGCTATGA
* * *
60115501 TCTACTCAACTGCAACTTTAGAGAGATAAGATTTGTAATTTATAGCTTCAATCTGTTCCACTGCA
1 TCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAATTTATAGCTTCAATCTGTTCCACTGCA
60115566 ACTTCAGGGAAATAAGATTCACTTTCTTCAG
66 ACTTCAGGGAAATAAGATTC-CTTTCTTCAG
* * *
60115597 TCTACTCTACTGCAACTTCAAAGAGATAAGACTTG-----TA-A-CTTCAACCTGCTCCACTGCA
1 TCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAATTTATAGCTTCAATCTGTTCCACTGCA
* * * *
60115655 ACTTCAGGGAGATAAG-GT--TTGCTATGA-
66 ACTTCAGGGAAATAAGATTCCTTTCT-TCAG
* * * *
60115682 TATACTCTACTACAACTTTAGAGAGATAAGA-TCTGTAATTTATAGCTTCAATCTGTTCTACTGC
1 TCTACTCTACTGCAACTTCAGAGAGATAAGACT-TGTAATTTATAGCTTCAATCTGTTCCACTGC
* * *
60115746 AATTTCAGGAAAATAAGATTCGCTATCTTCAG
65 AACTTCAGGGAAATAAGATTC-CTTTCTTCAG
* *
60115778 TCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTAA
1 TCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAA
60115816 CTTCAACCTA
Statistics
Matches: 175, Mismatches: 29, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
84 1 0.01
85 33 0.19
86 2 0.01
88 1 0.01
89 33 0.19
90 3 0.02
91 3 0.02
92 30 0.17
93 1 0.01
95 2 0.01
96 65 0.37
97 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (95 bp):
TCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAATTTATAGCTTCAATCTGTTCCACTGCA
ACTTCAGGGAAATAAGATTCCTTTCTTCAG
Found at i:60115645 original size:181 final size:181
Alignment explanation
Indices: 60115406--60115864 Score: 702
Period size: 181 Copynumber: 2.5 Consensus size: 181
60115396 ATAAGATCTG
* * * * * ** *
60115406 CTATCTTGAGTGTACTCCACTACAACTTTAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACT
1 CTATCTTCAGTCTACTCTACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCCACT
* * * * *
60115471 GTAACTTCAAGGAGATAAGGTTTGCTATGATCTACTCAACTGCAACTTTAGAGAGATAAGATTTG
66 GCAACTTCAGGGAGATAAGGTTTGCTATGATATACTCAACTACAACTTTAGAGAGATAAGATCTG
*
60115536 TAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCA
131 TAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCA
*
60115587 CTTTCTTCAGTCTACTCTACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCCACT
1 CTATCTTCAGTCTACTCTACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCCACT
*
60115652 GCAACTTCAGGGAGATAAGGTTTGCTATGATATACTCTACTACAACTTTAGAGAGATAAGATCTG
66 GCAACTTCAGGGAGATAAGGTTTGCTATGATATACTCAACTACAACTTTAGAGAGATAAGATCTG
* * *
60115717 TAATTTATAGCTTCAATCTGTTCTACTGCAATTTCAGGAAAATAAGATTCG
131 TAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCA
* ** *
60115768 CTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACT
1 CTATCTTCAGTCTACTCTACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCCACT
*
60115833 GCAACTTCAGGGAGATAATGTTTGCTATGATA
66 GCAACTTCAGGGAGATAAGGTTTGCTATGATA
60115865 GATTTAATCT
Statistics
Matches: 253, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
181 253 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (181 bp):
CTATCTTCAGTCTACTCTACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCCACT
GCAACTTCAGGGAGATAAGGTTTGCTATGATATACTCAACTACAACTTTAGAGAGATAAGATCTG
TAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTCA
Found at i:60115660 original size:89 final size:88
Alignment explanation
Indices: 60115409--60115850 Score: 333
Period size: 96 Copynumber: 4.9 Consensus size: 88
60115399 AGATCTGCTA
* * * * * * * *
60115409 TCTTGAGTGTACTCCACTACAACTTTAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGTA
1 TCTTCAGTCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCA
* * *
60115474 ACTTCAAGGAGATAAG-GT--TT
66 ACTTCAGGGAAATAAGATTCCTT
* * * * * * *
60115494 GCTATGA-TCTACTCAACTGCAACTTTAGAGAGATAAGATTTGTAATTTATAGCTTCAATCTGTT
1 TCT-TCAGTCTACTCTACTGCAACTTCAGAGAGATAAGACTTG-----TA-A-CTTCAACCTGCT
60115558 CCACTGCAACTTCAGGGAAATAAGATTCACTT
58 CCACTGCAACTTCAGGGAAATAAGATTC-CTT
*
60115590 TCTTCAGTCTACTCTACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCA
1 TCTTCAGTCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCA
* *
60115655 ACTTCAGGGAGATAAG-GT--TT
66 ACTTCAGGGAAATAAGATTCCTT
* * * * * * * *
60115675 GCTATGA-TATACTCTACTACAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTT
1 TCT-TCAGTCTACTCTACTGCAACTTCAGAGAGATAAGA-C--T--TGTA-A-CTTCAACCTGCT
* * * *
60115739 CTACTGCAATTTCAGGAAAATAAGATTCGCTA
58 CCACTGCAACTTCAGGGAAATAAGATTC-CTT
* * *
60115771 TCTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCA
1 TCTTCAGTCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCA
*
60115836 ACTTCAGGGAGATAA
66 ACTTCAGGGAAATAA
60115851 TGTTTGCTAT
Statistics
Matches: 278, Mismatches: 53, Indels: 48
0.73 0.14 0.13
Matches are distributed among these distances:
85 63 0.23
86 6 0.02
88 2 0.01
89 61 0.22
90 7 0.03
91 7 0.03
92 60 0.22
93 3 0.01
95 5 0.02
96 64 0.23
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (88 bp):
TCTTCAGTCTACTCTACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCA
ACTTCAGGGAAATAAGATTCCTT
Found at i:60115945 original size:44 final size:44
Alignment explanation
Indices: 60115778--60115948 Score: 123
Period size: 44 Copynumber: 3.8 Consensus size: 44
60115768 CTATCTTCAG
* * * * ** *
60115778 TCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTTCTAGTTTTAA
* * *
60115822 CCTACTCCACTGCAACTTCAGGGAGATAATG-TTTGCTATGATAGATTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGAT-AGGATTT-CTA-G-T---TTTAA
* * *
60115872 TCTGGC-CTACTGCAACCTCAGAGG-TATAGGATTTCTAGTTTTAA
1 TCT-GCTCCACTGCAACTTCAG-GGAGATAGGATTTCTAGTTTTAA
60115916 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT
60115949 ACTATGATCT
Statistics
Matches: 97, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
43 4 0.04
44 55 0.57
45 4 0.04
47 1 0.01
48 1 0.01
49 5 0.05
50 24 0.25
51 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAGGATTTCTAGTTTTAA
Found at i:60116160 original size:274 final size:275
Alignment explanation
Indices: 60115642--60116179 Score: 690
Period size: 274 Copynumber: 2.0 Consensus size: 275
60115632 TAACTTCAAC
* * *
60115642 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGATATACTCTACTACAACTTTAGAGAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGATTACTATGATATACTCTACTACAACTTCAGAGAG
* * *
60115707 ATAAGATCTGTAATTTATAGCTTCAATCTGTTCTACTGCAATTTCAGGAAAATAAGATTCGCTAT
66 ATAAGATCTATAATTTATAGCTTCAATCTGTTCCAATGCAATTTCAGGAAAATAAGATTCGCTAT
* * *
60115772 CTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAA
131 CTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTGGTAACTTCAACCTACTCCACTGCAA
* * * ** *
60115837 CTTCAGGGAGATAATGTTTGCTATGATAGATTTAATCTGGCCTACTGCAACCTC-AGAGGTATAG
196 CTTCAGGGAGATAATGTTCGCCATGATAGATTCAATCCAGCCCACTGCAACCTCAAG-GGTATAG
60115901 GATTTCTAGTTTTAAT
260 GATTTCTAGTTTTAAT
* * *
60115917 CTGCTCCACTGCAACTTCAGGGAGAT-AGGATTACTATGATCTACTCTATTGCAACTTCAGAGAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGATTACTATGATATACTCTACTACAACTTCAGAGAG
* * * * *
60115981 GTAAGATCTATAATTTGTAGCTTTAATCTGTTCCAATGTAACTTT-AGGGAAATAAGATTCGCTA
66 ATAAGATCTATAATTTATAGCTTCAATCTGTTCCAATGCAA-TTTCAGGAAAATAAGATTCGCTA
* * * ** * * * *
60116045 TCTTCAGTCTGCTCCACTGTAACTTTAAGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTGCA
130 TCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTGGTAACTTCAACCTACTCCACTGCA
* * *
60116110 ACTTCATGGAGATAA-GATTCGCCATGAT-GACTTCAATCCATCCCACTGCAACTTCAAGGGTAT
195 ACTTCAGGGAGATAATG-TTCGCCATGATAGA-TTCAATCCAGCCCACTGCAACCTCAAGGGTAT
60116173 AGGATTT
258 AGGATTT
60116180 GTGGTTTCAC
Statistics
Matches: 224, Mismatches: 35, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
273 3 0.01
274 190 0.85
275 31 0.14
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (275 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGGATTACTATGATATACTCTACTACAACTTCAGAGAG
ATAAGATCTATAATTTATAGCTTCAATCTGTTCCAATGCAATTTCAGGAAAATAAGATTCGCTAT
CTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTGGTAACTTCAACCTACTCCACTGCAA
CTTCAGGGAGATAATGTTCGCCATGATAGATTCAATCCAGCCCACTGCAACCTCAAGGGTATAGG
ATTTCTAGTTTTAAT
Found at i:60117039 original size:20 final size:18
Alignment explanation
Indices: 60117009--60117066 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
60116999 TGGCCTCTCC
60117009 TTTTATTTTTCTTTTCTT
1 TTTTATTTTTCTTTTCTT
*
60117027 TTTTCATTTTTTCCTTTC--
1 TTTT-A-TTTTTCTTTTCTT
60117045 TTTTATTTTTCTTTTCTT
1 TTTTATTTTTCTTTTCTT
60117063 TTTT
1 TTTT
60117067 TTTATGAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
16 10 0.29
17 1 0.03
18 12 0.35
19 1 0.03
20 10 0.29
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTATTTTTCTTTTCTT
Found at i:60117055 original size:16 final size:16
Alignment explanation
Indices: 60117008--60117069 Score: 72
Period size: 16 Copynumber: 3.7 Consensus size: 16
60116998 TTGGCCTCTC
60117008 CTTTTATTTTTCTTTT
1 CTTTTATTTTTCTTTT
*
60117024 CTTTTTTCATTTTTTCCTTT
1 C--TTTT-A-TTTTTCTTTT
60117044 CTTTTATTTTTCTTTT
1 CTTTTATTTTTCTTTT
60117060 CTTTT-TTTTT
1 CTTTTATTTTT
60117070 ATGAAACATT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 5 0.12
16 15 0.38
17 1 0.03
18 8 0.20
19 1 0.03
20 10 0.25
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.81
Consensus pattern (16 bp):
CTTTTATTTTTCTTTT
Found at i:60122212 original size:18 final size:17
Alignment explanation
Indices: 60122185--60122227 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
60122175 AGTTTAAAAA
60122185 ATAA-AAATAAAA-AGAT
1 ATAATAAATAAAACA-AT
60122201 ATAAATAAATAAAACAAT
1 AT-AATAAATAAAACAAT
60122219 ATAATAAAT
1 ATAATAAAT
60122228 TAAATGTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 2 0.08
17 9 0.38
18 12 0.50
19 1 0.04
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (17 bp):
ATAATAAATAAAACAAT
Found at i:60122501 original size:13 final size:13
Alignment explanation
Indices: 60122483--60122507 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60122473 GAAGTTATAT
60122483 GTGTGAAAATTTC
1 GTGTGAAAATTTC
60122496 GTGTGAAAATTT
1 GTGTGAAAATTT
60122508 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:60124237 original size:57 final size:59
Alignment explanation
Indices: 60124149--60124288 Score: 187
Period size: 57 Copynumber: 2.4 Consensus size: 59
60124139 TCGGATTACC
* * * *
60124149 CGTCCGGACTAAATCAATTTTCCACATATTCTTCGGGAGGGCTATATCA-AT-ATCACT
1 CGTCCGGGCTAGATCATTTTTCCACATATTCTTCAGGAGGGCTATATCAGATGATCACT
60124206 CGTCCGGGCTAGATC-TTTTTCACACATATTCTTCAGGAGGGCTATATCAGGATAGGATCACT
1 CGTCCGGGCTAGATCATTTTTC-CACATATTCTTCAGGAGGGCTATATCA-GAT--GATCACT
60124268 CGTCCGGGCTAGATCATTTTT
1 CGTCCGGGCTAGATCATTTTT
60124289 ACCGTCAATT
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
56 5 0.07
57 39 0.54
59 2 0.03
62 21 0.29
63 5 0.07
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (59 bp):
CGTCCGGGCTAGATCATTTTTCCACATATTCTTCAGGAGGGCTATATCAGATGATCACT
Found at i:60129991 original size:13 final size:13
Alignment explanation
Indices: 60129973--60129997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60129963 TAAGTTATAT
60129973 GTGTGAAAATTTC
1 GTGTGAAAATTTC
60129986 GTGTGAAAATTT
1 GTGTGAAAATTT
60129998 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:60131430 original size:41 final size:41
Alignment explanation
Indices: 60131373--60131479 Score: 153
Period size: 41 Copynumber: 2.6 Consensus size: 41
60131363 ATAATTGGTT
* *
60131373 TTCAGGCTTAATGTCTAGCAGGCTTGATGCCGGTGAATTAC
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAC
* *
60131414 TTCAGACTTTATGTCTAGCAAGCTTGATGCCGGTGAATTAT
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAC
*
60131455 TTCAGAC-TTATTATCTAGCAGGCTT
1 TTCAGACTTTA-TGTCTAGCAGGCTT
60131480 CGTGCTGGTG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 3 0.05
41 56 0.95
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (41 bp):
TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAC
Found at i:60136328 original size:50 final size:50
Alignment explanation
Indices: 60136204--60136452 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
60136194 GATAATAACA
* * ** * *
60136204 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
60136255 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
60136305 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
60136355 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
60136410 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
60136453 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:60136382 original size:100 final size:104
Alignment explanation
Indices: 60136203--60136452 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
60136193 TGATAATAAC
**
60136203 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
60136268 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
60136305 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
60136368 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
60136410 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
60136453 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:60136568 original size:13 final size:13
Alignment explanation
Indices: 60136547--60136578 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
60136537 GCTTGGATCA
*
60136547 TCATCAAATAAAT
1 TCATAAAATAAAT
60136560 TCATAAAATAAAT
1 TCATAAAATAAAT
60136573 TCATAA
1 TCATAA
60136579 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:60136824 original size:30 final size:30
Alignment explanation
Indices: 60136789--60136846 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
60136779 CCTCGACTCT
*
60136789 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
60136819 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
60136847 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:60138555 original size:41 final size:41
Alignment explanation
Indices: 60138498--60138579 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
60138488 TTTCGAGGTT
60138498 TAAAGATTTATTTATCTCACTTTGAGGGAGACATAATTATA
1 TAAAGATTTATTTATCTCACTTTGAGGGAGACATAATTATA
60138539 TAAAGATTTATTTATCTCACTTTGAGGGAGACATAATTATA
1 TAAAGATTTATTTATCTCACTTTGAGGGAGACATAATTATA
60138580 GTTTTAAGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (41 bp):
TAAAGATTTATTTATCTCACTTTGAGGGAGACATAATTATA
Found at i:60155371 original size:26 final size:26
Alignment explanation
Indices: 60155335--60155386 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
60155325 TGATTAAGTT
60155335 AATATTACAAGTTAGTCAGACACTAA
1 AATATTACAAGTTAGTCAGACACTAA
*
60155361 AATATTACAAGTTAGTTAGACACTAA
1 AATATTACAAGTTAGTCAGACACTAA
60155387 CTCAATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (26 bp):
AATATTACAAGTTAGTCAGACACTAA
Found at i:60159307 original size:105 final size:101
Alignment explanation
Indices: 60159126--60159320 Score: 250
Period size: 105 Copynumber: 1.9 Consensus size: 101
60159116 AATTGACAGA
* *
60159126 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAACTAGGCAATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAACTAGGCAATGACATTTTAA
60159191 TGAAATGACCATAACTGGGTTATGGCACCTTGAACG
66 TGAAATGACCATAACTGGGTTATGGCACCTTGAACG
* * * *
60159227 TAAGACCATGGTTGGACCATGGCAGTATAG-ATACATGTGTAAGACCATAGCTGGGCTATGACAT
1 TAAGACCATGGTTGGACCATGGCA--AT-GTATA-A-ATGTAAGACCATAACTAGGCAATGACAT
* *
60159291 TTTGATTATAA-GACCATAACTGGGTTATGG
61 TTTAATGA-AATGACCATAACTGGGTTATGG
60159321 TACTACAAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
101 24 0.30
103 4 0.05
104 2 0.03
105 48 0.60
106 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAACTAGGCAATGACATTTTAA
TGAAATGACCATAACTGGGTTATGGCACCTTGAACG
Found at i:60159335 original size:105 final size:101
Alignment explanation
Indices: 60159126--60159374 Score: 249
Period size: 105 Copynumber: 2.4 Consensus size: 101
60159116 AATTGACAGA
* *
60159126 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAACTAGGCAATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAACTAGGCAATGACATTTTAA
**
60159191 TGAAATGACCATAACTGGGTTATGGCACCTTGAACG
66 TGAAATGACCATAACTGGGTTATGGCACCTCAAACG
* * * *
60159227 TAAGACCATGGTTGGACCATGGCAGTATAG-ATACATGTGTAAGACCATAGCTGGGCTATGACAT
1 TAAGACCATGGTTGGACCATGGCA--AT-GTATA-A-ATGTAAGACCATAACTAGGCAATGACAT
* * * *
60159291 TTTGATTATAA-GACCATAACTGGGTTATGGTA-CTACAAATG
61 TTTAATGA-AATGACCATAACTGGGTTATGGCACCT-CAAACG
** *
60159332 TAAGACCATGGCAGGGA-CATGGCAATGCAT--ATGTAAGACCATA
1 TAAGACCATGG-TTGGACCATGGCAATGTATAAATGTAAGACCATA
60159375 GTTGGACTAT
Statistics
Matches: 124, Mismatches: 15, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
99 12 0.10
101 24 0.19
102 1 0.01
103 8 0.06
104 4 0.03
105 70 0.56
106 5 0.04
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAACTAGGCAATGACATTTTAA
TGAAATGACCATAACTGGGTTATGGCACCTCAAACG
Found at i:60160438 original size:21 final size:20
Alignment explanation
Indices: 60160414--60160464 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
60160404 TACCCAAAAA
*
60160414 TAAATAAAATTTGAAAATTCT
1 TAAATAAAATTTAAAAATT-T
60160435 TAAATCAATAA-TTAAAAATTT
1 TAAAT-AA-AATTTAAAAATTT
60160456 TAAA-AAAAT
1 TAAATAAAAT
60160465 GATAAAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
18 2 0.08
19 2 0.08
21 10 0.38
22 10 0.38
23 2 0.08
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (20 bp):
TAAATAAAATTTAAAAATTT
Found at i:60160729 original size:18 final size:16
Alignment explanation
Indices: 60160695--60160734 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
60160685 AGCAAATAAA
*
60160695 TAAAAAAATAATTATT
1 TAAAAAAATAATGATT
60160711 TAAAAAAATAAAATGATT
1 TAAAAAAAT--AATGATT
60160729 TAAAAA
1 TAAAAA
60160735 TTATAAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.43
18 12 0.57
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (16 bp):
TAAAAAAATAATGATT
Found at i:60165280 original size:5 final size:5
Alignment explanation
Indices: 60165270--60165295 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
60165260 GAACAAATAT
60165270 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
60165296 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:60177368 original size:2 final size:2
Alignment explanation
Indices: 60177361--60177391 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
60177351 AAACCCTCCA
60177361 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
60177392 TCACTCTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:60180408 original size:4 final size:4
Alignment explanation
Indices: 60180401--60180425 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
60180391 TAAATTAATT
60180401 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
60180426 TTAATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:60181367 original size:14 final size:14
Alignment explanation
Indices: 60181348--60181380 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
60181338 CATGCAATGC
60181348 ACACTTCTTATTTT
1 ACACTTCTTATTTT
60181362 ACACTTCTTATTTT
1 ACACTTCTTATTTT
60181376 ACACT
1 ACACT
60181381 CGTACACCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (14 bp):
ACACTTCTTATTTT
Found at i:60183789 original size:23 final size:24
Alignment explanation
Indices: 60183713--60183806 Score: 82
Period size: 25 Copynumber: 3.9 Consensus size: 24
60183703 GTGGCTTCGA
* * *
60183713 AGAGCCATTAACGGGAAACTCCGA
1 AGAGCCATTATCGGGAAGCTCCGG
* * **
60183737 ATAGCCATATATCGGGAAGTTCAAG
1 AGAGCCAT-TATCGGGAAGCTCCGG
*
60183762 CGAGCCA-TATCGGGAAGCTCCGG
1 AGAGCCATTATCGGGAAGCTCCGG
*
60183785 AGAGCCATTAATCAGGAAGCTC
1 AGAGCCATT-ATCGGGAAGCTC
60183807 ACAAAGAGCC
Statistics
Matches: 53, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
23 19 0.36
24 8 0.15
25 26 0.49
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (24 bp):
AGAGCCATTATCGGGAAGCTCCGG
Found at i:60183805 original size:25 final size:25
Alignment explanation
Indices: 60183710--60183841 Score: 89
Period size: 26 Copynumber: 5.3 Consensus size: 25
60183700 AGGGTGGCTT
*
60183710 CGAAGAGCCATTAA-CGGGAAACTC-
1 CGAAGAGCCATTAATC-GGAAGCTCA
* *
60183734 CGAATAGCCA-TATATCGGGAAGTTCA
1 CGAAGAGCCATTA-ATC-GGAAGCTCA
* *
60183760 AG-CGAGCCA-T-ATCGGGAAGCTC-
1 CGAAGAGCCATTAATC-GGAAGCTCA
*
60183782 CGGAGAGCCATTAATCAGGAAGCTCA
1 CGAAGAGCCATTAATC-GGAAGCTCA
* *
60183808 CAAAGAGCCTTTAATCGGAAAGCTCA
1 CGAAGAGCCATTAATCGG-AAGCTCA
60183834 CGAAGAGC
1 CGAAGAGC
60183842 TATATCACGG
Statistics
Matches: 86, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
22 1 0.01
23 19 0.22
24 11 0.13
25 27 0.31
26 28 0.33
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (25 bp):
CGAAGAGCCATTAATCGGAAGCTCA
Found at i:60188078 original size:46 final size:47
Alignment explanation
Indices: 60187962--60188079 Score: 130
Period size: 47 Copynumber: 2.5 Consensus size: 47
60187952 TGAGTTTCCA
* * * * * *
60187962 TATAATACCATATCTGGGATATGGCATCGGTGTGATATGTGCTACTG
1 TATAAGACCATAGCTAGGATATGGCATCAGTGTGATATGTGATACCG
* * *
60188009 TGTAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGAT-CCG
1 TATAAGACCATAGCTAGGATATGGCATCAGTGTGATATGTGATACCG
* *
60188055 TATAAGACCATGGCTAGGCTATGGC
1 TATAAGACCATAGCTAGGATATGGC
60188080 TTTGGTGTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
46 22 0.36
47 39 0.64
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (47 bp):
TATAAGACCATAGCTAGGATATGGCATCAGTGTGATATGTGATACCG
Found at i:60192668 original size:24 final size:22
Alignment explanation
Indices: 60192650--60192692 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
60192640 ACCATACTTA
60192650 TAATT-TCAAATAACACCATAT
1 TAATTCTCAAATAACACCATAT
60192671 TAATTCTCAAATAA-ACACATAT
1 TAATTCTCAAATAACAC-CATAT
60192693 CACATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.33
Consensus pattern (22 bp):
TAATTCTCAAATAACACCATAT
Found at i:60193441 original size:51 final size:50
Alignment explanation
Indices: 60193365--60193466 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 50
60193355 ATTAAGCTAC
60193365 AACAATTTCAAAACACATAAATTTACAAAAAAAAAAAGGTG-AAAATGGCTT
1 AACAATTTCAAAACACATAAATTTAC--AAAAAAAAAGGTGAAAAATGGCTT
* *
60193416 AACAATTTCAAAACACATAAATTTACGAAAAGAAAGGTGAAAAATGGCTT
1 AACAATTTCAAAACACATAAATTTACAAAAAAAAAGGTGAAAAATGGCTT
60193466 A
1 A
60193467 CCATGCAAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
49 11 0.23
50 11 0.23
51 26 0.54
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.22
Consensus pattern (50 bp):
AACAATTTCAAAACACATAAATTTACAAAAAAAAAGGTGAAAAATGGCTT
Found at i:60204469 original size:20 final size:20
Alignment explanation
Indices: 60204444--60204538 Score: 99
Period size: 20 Copynumber: 4.8 Consensus size: 20
60204434 GACTAGACCA
60204444 AAAAATTATAATAAAATA-TT
1 AAAAATTATAA-AAAATATTT
*
60204464 AAAAATCATAAAATAATATTT
1 AAAAATTATAAAA-AATATTT
60204485 AAAAA-TATATAAAAATA-TT
1 AAAAATTATA-AAAAATATTT
* *
60204504 AAAAA-TGTAAAATATATTT
1 AAAAATTATAAAAAATATTT
*
60204523 AAAAATTGTAAAAAAT
1 AAAAATTATAAAAAAT
60204539 TAAATGTTGT
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.09
19 19 0.29
20 30 0.46
21 10 0.15
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATTATAAAAAATATTT
Found at i:60204497 original size:10 final size:10
Alignment explanation
Indices: 60204456--60204528 Score: 64
Period size: 10 Copynumber: 7.5 Consensus size: 10
60204446 AAATTATAAT
60204456 AAAATAT-TA
1 AAAATATATA
60204465 AAAATCATA-A
1 AAAAT-ATATA
*
60204475 AATAATATTTA
1 AA-AATATATA
60204486 AAAATATATA
1 AAAATATATA
60204496 AAAATAT-TA
1 AAAATATATA
*
60204505 AAAATGTA-A
1 AAAATATATA
* *
60204514 AATATATTTA
1 AAAATATATA
60204524 AAAAT
1 AAAAT
60204529 TGTAAAAAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
9 19 0.37
10 26 0.51
11 6 0.12
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (10 bp):
AAAATATATA
Found at i:60204534 original size:28 final size:27
Alignment explanation
Indices: 60204484--60204536 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
60204474 AAATAATATT
60204484 TAAAAATATATAAAAATATTAAAAATG
1 TAAAAATATATAAAAATATTAAAAATG
*
60204511 TAAAATATATTTAAAAAT-TGTAAAAA
1 TAAAA-ATATATAAAAATAT-TAAAAA
60204537 ATTAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (27 bp):
TAAAAATATATAAAAATATTAAAAATG
Found at i:60204542 original size:8 final size:9
Alignment explanation
Indices: 60204456--60204542 Score: 72
Period size: 9 Copynumber: 9.2 Consensus size: 9
60204446 AAATTATAAT
60204456 AAAATATTA
1 AAAATATTA
*
60204465 AAAATCATAA
1 AAAAT-ATTA
60204475 AATAATATTTA
1 AA-AATA-TTA
60204486 AAAATATATA
1 AAAATAT-TA
60204496 AAAATATTA
1 AAAATATTA
*
60204505 AAAAT-GTA
1 AAAATATTA
60204513 AAATATATTTA
1 AAA-ATA-TTA
60204524 AAAAT-TGTA
1 AAAATAT-TA
60204533 AAAA-ATTA
1 AAAATATTA
60204541 AA
1 AA
60204543 TGTTGTTAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
8 10 0.15
9 22 0.34
10 21 0.32
11 12 0.18
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAATATTA
Found at i:60204542 original size:28 final size:26
Alignment explanation
Indices: 60204483--60204542 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
60204473 AAAATAATAT
60204483 TTAAAAATATATAAAAATATTAAAAA
1 TTAAAAATATATAAAAATATTAAAAA
*
60204509 TGTAAAATATATTTAAAAAT-TGTAAAAAA
1 T-TAAAA-ATATATAAAAATAT-T-AAAAA
60204538 TTAAA
1 TTAAA
60204543 TGTTGTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
26 1 0.03
27 6 0.21
28 16 0.55
29 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (26 bp):
TTAAAAATATATAAAAATATTAAAAA
Found at i:60204553 original size:38 final size:37
Alignment explanation
Indices: 60204444--60204631 Score: 130
Period size: 37 Copynumber: 4.8 Consensus size: 37
60204434 GACTAGACCA
*
60204444 AAAAATTATAATAAAATATTAAAAATCATAAAATAATATTT
1 AAAAATTAT-A-AAAATATTAAAAAT-GTAAAAT-ATATTT
60204485 AAAAATATATAAAAATATTAAAAATGTAAAATATATTT
1 AAAAAT-TATAAAAATATTAAAAATGTAAAATATATTT
* **
60204523 AAAAATTGTAAAAA-ATTAAATGTTGTTAAAA-ATATTT
1 AAAAATTATAAAAATATTAAA-AATG-TAAAATATATTT
* * * *
60204560 TAAAATTCTAAAAAGGTTATTAAAAATAATAAAAATTTATTT
1 AAAAATTATAAAAA---TATTAAAAAT-GT-AAAATATATTT
***
60204602 AATTTTTA-AAAAATTATTAAAAATTGTAAA
1 AAAAATTATAAAAA-TATTAAAAA-TGTAAA
60204632 TAATTAACAA
Statistics
Matches: 120, Mismatches: 16, Indels: 25
0.75 0.10 0.16
Matches are distributed among these distances:
36 6 0.05
37 27 0.22
38 20 0.17
39 17 0.14
40 17 0.14
41 22 0.18
42 11 0.09
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.37
Consensus pattern (37 bp):
AAAAATTATAAAAATATTAAAAATGTAAAATATATTT
Found at i:60204631 original size:20 final size:19
Alignment explanation
Indices: 60204444--60204631 Score: 98
Period size: 20 Copynumber: 9.6 Consensus size: 19
60204434 GACTAGACCA
60204444 AAAAATTATAATAAAATATT
1 AAAAATTATAA-AAAATATT
*
60204464 AAAAATCATAAAATAATATTT
1 AAAAATTATAAAA-AATA-TT
60204485 AAAAA-TATATAAAAATATT
1 AAAAATTATA-AAAAATATT
* *
60204504 AAAAA-TGTAAAATATATTT
1 AAAAATTATAAAAAATA-TT
*
60204523 AAAAATTGT-AAAAA-ATT
1 AAAAATTATAAAAAATATT
** * *
60204540 AAATGTTGTTAAAAATATTT
1 AAAAATTATAAAAAATA-TT
* * *
60204560 TAAAATTCTAAAAAGGTTATT
1 AAAAATTATAAAAA--ATATT
* *
60204581 AAAAATAATAAAAATTTATT
1 AAAAATTATAAAAA-ATATT
* * *
60204601 -TAATTTTTAAAAAATTATT
1 AAAAATTATAAAAAA-TATT
*
60204620 AAAAATTGTAAA
1 AAAAATTATAAA
60204632 TAATTAACAA
Statistics
Matches: 131, Mismatches: 25, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
17 9 0.07
18 12 0.09
19 37 0.28
20 48 0.37
21 23 0.18
22 2 0.02
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.37
Consensus pattern (19 bp):
AAAAATTATAAAAAATATT
Found at i:60204660 original size:12 final size:12
Alignment explanation
Indices: 60204643--60204669 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
60204633 AATTAACAAA
60204643 TCTCCTTCTTCT
1 TCTCCTTCTTCT
60204655 TCTCCTTCTTCT
1 TCTCCTTCTTCT
60204667 TCT
1 TCT
60204670 TCTATGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (12 bp):
TCTCCTTCTTCT
Found at i:60204845 original size:21 final size:21
Alignment explanation
Indices: 60204821--60205011 Score: 67
Period size: 20 Copynumber: 9.6 Consensus size: 21
60204811 CCACCAATTC
*
60204821 ACAATTATTTAATCATTATTT
1 ACAATTATTTAATAATTATTT
*
60204842 ACAATTTTTTAATAATTA-TT
1 ACAATTATTTAATAATTATTT
* *
60204862 AGC-ATTTTTTAAT-ATT-TTCC
1 A-CAATTATTTAATAATTATT-T
*
60204882 CCAATT-TTTAATAATT-TTT
1 ACAATTATTTAATAATTATTT
* *
60204901 ACAAATT-TTAAATAAGGT-TTT
1 AC-AATTATTTAATAA-TTATTT
* *
60204922 ATAATT-TTTAATAACTTTTTTT
1 ACAATTATTTAATAA--TTATTT
* *
60204944 ACAA-CA-TTAA-AATATTTTT
1 ACAATTATTTAATAAT-TATTT
60204963 AACAA-TATTTAATAATTA-TT
1 -ACAATTATTTAATAATTATTT
* *
60204983 ACAA-TAATTAAT--TTTTTT
1 ACAATTATTTAATAATTATTT
60205001 ACAATT-TTTAA
1 ACAATTATTTAA
60205012 ATGTTTTTTT
Statistics
Matches: 135, Mismatches: 19, Indels: 35
0.71 0.10 0.19
Matches are distributed among these distances:
17 2 0.01
18 11 0.08
19 29 0.21
20 52 0.39
21 32 0.24
22 9 0.07
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.52
Consensus pattern (21 bp):
ACAATTATTTAATAATTATTT
Found at i:60204897 original size:10 final size:10
Alignment explanation
Indices: 60204884--60204941 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
60204874 TATTTTCCCC
60204884 AATTTTTAAT
1 AATTTTTAAT
60204894 AATTTTTACA-
1 AATTTTTA-AT
*
60204904 AATTTTAAAT
1 AATTTTTAAT
*
60204914 AAGGTTTT-AT
1 AA-TTTTTAAT
60204924 AATTTTTAAT
1 AATTTTTAAT
60204934 AACTTTTT
1 AA-TTTTT
60204942 TTACAACATT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.13
10 25 0.64
11 9 0.23
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:60204907 original size:20 final size:20
Alignment explanation
Indices: 60204823--60204941 Score: 82
Period size: 20 Copynumber: 5.8 Consensus size: 20
60204813 ACCAATTCAC
*
60204823 AATTATTTAATCATTATTTACA
1 AATT-TTTAATAATT-TTTACA
* *
60204845 ATTTTTTAATAATTATTAGC-
1 AATTTTTAATAATTTTTA-CA
* ** *
60204865 ATTTTTTAAT-ATTTTCCCC
1 AATTTTTAATAATTTTTACA
60204884 AATTTTTAATAATTTTTACA
1 AATTTTTAATAATTTTTACA
* * *
60204904 AATTTTAAATAAGGTTTTA-T
1 AATTTTTAATAA-TTTTTACA
60204924 AATTTTTAATAACTTTTT
1 AATTTTTAATAA-TTTTT
60204942 TTACAACATT
Statistics
Matches: 77, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
18 1 0.01
19 13 0.17
20 45 0.58
21 15 0.19
22 3 0.04
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTTAATAATTTTTACA
Found at i:60205020 original size:20 final size:19
Alignment explanation
Indices: 60204992--60205065 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 19
60204982 TACAATAATT
60204992 AATTTTTTTACAATTTTTA
1 AATTTTTTTACAATTTTTA
** *
60205011 AATGTTTTTTTTAATTTGTA
1 AAT-TTTTTTACAATTTTTA
* *
60205031 ACATTTTTTAATAA--TTTA
1 A-ATTTTTTTACAATTTTTA
60205049 AATATTTTTTACAATTT
1 AAT-TTTTTTACAATTT
60205066 ATATATATTA
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
17 2 0.05
18 12 0.29
19 3 0.07
20 23 0.55
21 2 0.05
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (19 bp):
AATTTTTTTACAATTTTTA
Found at i:60205073 original size:20 final size:19
Alignment explanation
Indices: 60204938--60205074 Score: 75
Period size: 19 Copynumber: 7.1 Consensus size: 19
60204928 TTTAATAACT
* *
60204938 TTTTTTACAACATTAAAATA
1 TTTTTTACAA-TTTATAATA
*
60204958 TTTTTAACAATATT-TAATA
1 TTTTTTACAAT-TTATAATA
* * *
60204977 ATTATTACAA-TAATTAAT-
1 TTTTTTACAATTTA-TAATA
* *
60204995 TTTTTTACAATTTTTAAATG
1 TTTTTTACAATTTAT-AATA
** * *
60205015 TTTTTTTTAATTTGTAACA
1 TTTTTTACAATTTATAATA
*
60205034 TTTTTTAATAATTTA-AATA
1 TTTTTT-ACAATTTATAATA
60205053 TTTTTTACAATTTATATATA
1 TTTTTTACAATTTATA-ATA
60205073 TT
1 TT
60205075 ACGATTTTTA
Statistics
Matches: 88, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
17 1 0.01
18 16 0.18
19 37 0.42
20 34 0.39
ACGTcount: A:0.38, C:0.05, G:0.01, T:0.55
Consensus pattern (19 bp):
TTTTTTACAATTTATAATA
Found at i:60206570 original size:18 final size:17
Alignment explanation
Indices: 60206556--60206593 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
60206546 ATAAAAACTA
60206556 TTTTAAAAAA-TAAAAT
1 TTTTAAAAAAGTAAAAT
*
60206572 TTGTTAAAAAAGTATAAT
1 TT-TTAAAAAAGTAAAAT
60206590 TTTT
1 TTTT
60206594 TTAAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 2 0.11
17 10 0.53
18 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
TTTTAAAAAAGTAAAAT
Found at i:60206599 original size:18 final size:18
Alignment explanation
Indices: 60206556--60206601 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
60206546 ATAAAAACTA
60206556 TTTTAAAAAATAAAA-TT
1 TTTTAAAAAATAAAATTT
* *
60206573 TGTTAAAAAAGTATAATTT
1 TTTTAAAAAA-TAAAATTT
60206592 TTTTAAAAAA
1 TTTTAAAAAA
60206602 ATTAATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 9 0.38
18 4 0.17
19 11 0.46
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (18 bp):
TTTTAAAAAATAAAATTT
Done.