Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 2 of 216
Found at i:545842 original size:42 final size:42
Alignment explanation
Indices: 545790--545889 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
545780 GATCTTGGAA
* * **
545790 TCGCACACTTAGTGCCGGTTATTCGACATCGTCATTTTTGTT
1 TCGCACACTTAGTGCCCGTTATTCAACATCGTCATTTTAATT
* *
545832 TCGCACACTTAGTTCCCGTTATTCAACATTGTCATTTTAATT
1 TCGCACACTTAGTGCCCGTTATTCAACATCGTCATTTTAATT
545874 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
545890 ATTCGTATAG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCGTTATTCAACATCGTCATTTTAATT
Found at i:576888 original size:18 final size:18
Alignment explanation
Indices: 576865--576900 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
576855 AATTTTTTAA
576865 AAAAATAAATAAATATAT
1 AAAAATAAATAAATATAT
*
576883 AAAAATACATAAATATAT
1 AAAAATAAATAAATATAT
576901 TTTTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAAATAAATAAATATAT
Found at i:576907 original size:22 final size:21
Alignment explanation
Indices: 576858--576923 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
576848 TTATCCTAAT
576858 TTTTTAAAAA-AATAAATAAA
1 TTTTTAAAAATAATAAATAAA
* * *
576878 TATATAAAAATACATAAATATA
1 TTTTTAAAAATA-ATAAATAAA
576900 TTTTTAAAATATAAT-AATAAA
1 TTTTTAAAA-ATAATAAATAAA
576921 TTT
1 TTT
576924 ACATGTTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
20 8 0.22
21 9 0.24
22 17 0.46
23 3 0.08
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTTTAAAAATAATAAATAAA
Found at i:582289 original size:20 final size:20
Alignment explanation
Indices: 582252--582292 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
582242 GATATATGAT
*
582252 TAAATTAACTAATGAAATTA
1 TAAATTAAATAATGAAATTA
* *
582272 TAAATTAAATGATTAAATTA
1 TAAATTAAATAATGAAATTA
582292 T
1 T
582293 TTTAAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (20 bp):
TAAATTAAATAATGAAATTA
Found at i:584747 original size:38 final size:36
Alignment explanation
Indices: 584644--584752 Score: 114
Period size: 38 Copynumber: 2.9 Consensus size: 36
584634 CGGCCCTACC
*
584644 TATATTTGATTAAAAATAAAAATATATATT--TAATA
1 TATATTTGATTAAAAATAAAAATATAT-TTAATAAAA
*
584679 TATAATTTAGATTAAAAGTTCAAAATATATATTTAATAAAAA
1 TAT-ATTT-GATTAAAA-AT-AAAA-ATATATTTAAT-AAAA
584721 GTATATTTGATTAAAAATAAAAATATATTTAA
1 -TATATTTGATTAAAAATAAAAATATATTTAA
584753 CATATAATTC
Statistics
Matches: 62, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
35 3 0.05
36 4 0.06
37 8 0.13
38 11 0.18
39 10 0.16
40 7 0.11
41 9 0.15
42 7 0.11
43 3 0.05
ACGTcount: A:0.54, C:0.01, G:0.05, T:0.40
Consensus pattern (36 bp):
TATATTTGATTAAAAATAAAAATATATTTAATAAAA
Found at i:587677 original size:26 final size:27
Alignment explanation
Indices: 587648--587704 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
587638 ATCATTCTAC
*
587648 ATTTATTATTAAAAAATTAA-AATTAT
1 ATTTATTATTAAAAAATTAACAATAAT
* * *
587674 ATTTATTTTTTAAATATTAACAATAAT
1 ATTTATTATTAAAAAATTAACAATAAT
587701 ATTT
1 ATTT
587705 TATAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
ATTTATTATTAAAAAATTAACAATAAT
Found at i:589133 original size:5 final size:5
Alignment explanation
Indices: 589123--589152 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
589113 GTATTACATA
589123 ATTAT ATTAT ATTAT ATTAT ATTATT ATTA
1 ATTAT ATTAT ATTAT ATTAT ATTA-T ATTA
589153 AAACATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:594866 original size:17 final size:17
Alignment explanation
Indices: 594844--594880 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
594834 ACTCATAAAG
594844 CTATAGATTTTTTTATT
1 CTATAGATTTTTTTATT
594861 CTATAGATTTTTTTATT
1 CTATAGATTTTTTTATT
594878 CTA
1 CTA
594881 AGTAAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.62
Consensus pattern (17 bp):
CTATAGATTTTTTTATT
Found at i:597738 original size:93 final size:93
Alignment explanation
Indices: 597629--597812 Score: 323
Period size: 93 Copynumber: 2.0 Consensus size: 93
597619 TTTGTAAAAT
597629 CTAACATTTTGCTAGTAAAATTATTAATTGTTAATTGTATTAATTGCTACTAAAATTATCAAATT
1 CTAACATTTTGCTAGTAAAATTATTAATTGTTAATTGTATTAATTGCTACTAAAATTATCAAATT
*
597694 ATATTAAATTATTAATTATTAATTGTTA
66 ATATCAAATTATTAATTATTAATTGTTA
* * *
597722 CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTTAGTAAAATTATCAAATT
1 CTAACATTTTGCTAGTAAAATTATTAATTGTTAATTGTATTAATTGCTACTAAAATTATCAAATT
*
597787 ATATCAAATTATTAATTGTTAATTGT
66 ATATCAAATTATTAATTATTAATTGT
597813 ATTAATTGTT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 86 1.00
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (93 bp):
CTAACATTTTGCTAGTAAAATTATTAATTGTTAATTGTATTAATTGCTACTAAAATTATCAAATT
ATATCAAATTATTAATTATTAATTGTTA
Found at i:600431 original size:19 final size:20
Alignment explanation
Indices: 600407--600445 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
600397 GTAAGTTGTG
600407 AATTTAGACA-TTTTAGTTT
1 AATTTAGACATTTTTAGTTT
*
600426 AATTTAGTCATTTTTAGTTT
1 AATTTAGACATTTTTAGTTT
600446 TATTCGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.56
Consensus pattern (20 bp):
AATTTAGACATTTTTAGTTT
Found at i:600617 original size:36 final size:36
Alignment explanation
Indices: 600575--600648 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 36
600565 AAAGTTGGTT
**
600575 AATAATTTGATGACTATCATTTGCATAAAGACTTGA
1 AATAATTTGACAACTATCATTTGCATAAAGACTTGA
* ** *
600611 AATAATTTGACAACTGTCATTTGTGTAAGGACTTGA
1 AATAATTTGACAACTATCATTTGCATAAAGACTTGA
600647 AA
1 AA
600649 ATTCAAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (36 bp):
AATAATTTGACAACTATCATTTGCATAAAGACTTGA
Found at i:600863 original size:22 final size:19
Alignment explanation
Indices: 600850--600888 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
600840 TAATAAACAC
600850 TAAAAATTTATTTAAAAAA
1 TAAAAATTTATTTAAAAAA
*
600869 TAAAAA-TTATTTTAAAAA
1 TAAAAATTTATTTAAAAAA
600887 TA
1 TA
600889 TTTAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAAAATTTATTTAAAAAA
Found at i:602824 original size:17 final size:17
Alignment explanation
Indices: 602804--602838 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
602794 CTTTTAGAAC
602804 CATAAAGTTTTTGCAGT
1 CATAAAGTTTTTGCAGT
602821 CATAAAGTTTTTGCAGT
1 CATAAAGTTTTTGCAGT
602838 C
1 C
602839 CCGATGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (17 bp):
CATAAAGTTTTTGCAGT
Found at i:613990 original size:24 final size:22
Alignment explanation
Indices: 613954--613997 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 22
613944 AATTAATTAA
613954 TTTTTAAAAAAATTTAAAATATT
1 TTTTTAAAAAAA-TTAAAATATT
613977 TTTTATAAAAAAATTAAAATA
1 TTTT-TAAAAAAATTAAAATA
613998 CTAATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTTTAAAAAAATTAAAATATT
Found at i:621791 original size:22 final size:22
Alignment explanation
Indices: 621749--621794 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
621739 TAAGACCCAA
*
621749 CAAATGCATCTCATGGAAAGCC
1 CAAATGCATCTCATAGAAAGCC
*
621771 CAAATGGCATCTC-TAGCAAGCC
1 CAAAT-GCATCTCATAGAAAGCC
621793 CA
1 CA
621795 TTTTGGGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.17
Consensus pattern (22 bp):
CAAATGCATCTCATAGAAAGCC
Found at i:625938 original size:19 final size:19
Alignment explanation
Indices: 625914--625972 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
625904 AATTGCATCG
625914 AAAAGAAATGGGTATAAGA
1 AAAAGAAATGGGTATAAGA
* *
625933 AAAAGAACT---TAT-CG-
1 AAAAGAAATGGGTATAAGA
*
625947 AATAGAAATGGGTATAAGA
1 AAAAGAAATGGGTATAAGA
625966 AAAAGAA
1 AAAAGAA
625973 CTTACTTTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 10
0.64 0.13 0.22
Matches are distributed among these distances:
14 7 0.24
15 1 0.03
16 3 0.10
17 3 0.10
18 1 0.03
19 14 0.48
ACGTcount: A:0.58, C:0.03, G:0.22, T:0.17
Consensus pattern (19 bp):
AAAAGAAATGGGTATAAGA
Found at i:625947 original size:33 final size:33
Alignment explanation
Indices: 625910--625976 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
625900 TGTAAATTGC
625910 ATCGAAAAGAAATGGGTATAAGAAAAAGAACTT
1 ATCGAAAAGAAATGGGTATAAGAAAAAGAACTT
*
625943 ATCGAATAGAAATGGGTATAAGAAAAAGAACTT
1 ATCGAAAAGAAATGGGTATAAGAAAAAGAACTT
625976 A
1 A
625977 CTTTTCTATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.54, C:0.06, G:0.21, T:0.19
Consensus pattern (33 bp):
ATCGAAAAGAAATGGGTATAAGAAAAAGAACTT
Found at i:627328 original size:210 final size:210
Alignment explanation
Indices: 626966--628380 Score: 2253
Period size: 210 Copynumber: 6.7 Consensus size: 210
626956 TCCTACTCTC
626966 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
1 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
627031 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGAGT-AGTGGAGGTC
66 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGA-TAAGTGGAGGTC
* * * ** *
627095 CACAACCCATCTCCAATCTTGCTT-AGTTTTCGACACGAGGAAATGTGAAATTTTTGAAGAGATG
130 GACAACCCGTCTCCTATCTTGCTTAAGTTTT-GACACGAGGAAATGTGAAGCTTTTCAAGAGATG
*
627159 AACATGTTCCTCTTATT
194 AACATCTTCCTCTTATT
* * *
627176 GGAACAATTTCCAGTTTGCTGCACTCTGATATATATAGATTTCGAAGAAAGGAAAATACTCCCAA
1 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
627241 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATAAGTGGAGGTCG
66 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATAAGTGGAGGTCG
* * *
627306 ACAACCAGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATAAA
131 ACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGAA
* **
627371 CATCTTCCCCTTCCT
196 CATCTTCCTCTTATT
627386 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
1 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
* ** * * * * * *
627451 ATCTGGAATGGAACTTAAATTAGCACAGCCACATAGCTTTAATTCTAT-AGGACAACTGGAGGTC
66 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCT-TCAAGATAAGTGGAGGTC
*
627515 AACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGA
130 GACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGA
*
627580 ACATCTTCCCCTTATT
195 ACATCTTCCTCTTATT
*
627596 GGAACAATTTCCAGTTTGCTGCACTTTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
1 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
* ** * * * * * *
627661 ATCTGGAATGGAACTTAAATTAGCACAGCCACGTAGCTTTAATTCTTTAAGACAACTGGAGGTCG
66 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATAAGTGGAGGTCG
627726 ACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGAA
131 ACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGAA
*
627791 CATCTTCCTCTAATT
196 CATCTTCCTCTTATT
*
627806 GGAACAATTTCCAGTTTGCTGCACTCTGAAATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
1 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
*
627871 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATTAGTGGAGGTCG
66 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATAAGTGGAGGTCG
627936 ACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGAA
131 ACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGAA
*
628001 CATCTTCCTCTAATT
196 CATCTTCCTCTTATT
*
628016 GGAACAATTTCCAGTTTGCTGCACTCTGAAATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
1 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
*
628081 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATTAGTGGAGGTCG
66 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATAAGTGGAGGTCG
* * *
628146 ACAACCCATCTCCAATCTTGCTT-AGTTTTCGACACGAGGAAATGTGAAGCTTTTGAAGAGATGA
131 ACAACCCGTCTCCTATCTTGCTTAAGTTTT-GACACGAGGAAATGTGAAGCTTTTCAAGAGATGA
628210 ACATCTTCCTCTTATT
195 ACATCTTCCTCTTATT
628226 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
1 GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
* * ** * * * * *
628291 ATCTGGAATGGAGCTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGACAAGTGGAGGTAG
66 ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATAAGTGGAGGTCG
* *
628356 ACAACCCGCCTCCTATCTCGCTTAA
131 ACAACCCGTCTCCTATCTTGCTTAA
628381 ATCCTTACAC
Statistics
Matches: 1130, Mismatches: 69, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
209 8 0.01
210 1114 0.99
211 8 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (210 bp):
GGAACAATTTCCAGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAA
ATCTGGAATGGAACTTAAATTAGGACAATCACTTAACTTCAATTCTTCAAGATAAGTGGAGGTCG
ACAACCCGTCTCCTATCTTGCTTAAGTTTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGAA
CATCTTCCTCTTATT
Found at i:632724 original size:42 final size:42
Alignment explanation
Indices: 632667--632792 Score: 225
Period size: 42 Copynumber: 3.0 Consensus size: 42
632657 GTTTTTAAGA
632667 AAGCTGGTGTATTTAAGAAGGTTTGGTGGAATAGTACTGTTT
1 AAGCTGGTGTATTTAAGAAGGTTTGGTGGAATAGTACTGTTT
*
632709 AAGCCGGTGTATTTAAGAAGGTTTGGTGGAATAGTACTGTTT
1 AAGCTGGTGTATTTAAGAAGGTTTGGTGGAATAGTACTGTTT
* *
632751 AAGCTGGTGTATTTAAGAATGTTAGGTGGAATAGTACTGTTT
1 AAGCTGGTGTATTTAAGAAGGTTTGGTGGAATAGTACTGTTT
632793 TCTGATGGAT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.27, C:0.06, G:0.30, T:0.37
Consensus pattern (42 bp):
AAGCTGGTGTATTTAAGAAGGTTTGGTGGAATAGTACTGTTT
Found at i:636912 original size:32 final size:34
Alignment explanation
Indices: 636858--636922 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
636848 ATCTTTAAAT
* *
636858 AATTAAAAATCATAATTTAAAATATTATGAAACA
1 AATTAAAAATAATAATTTAAAATATTATAAAACA
636892 AATTAAAAA-AAT-ATTTAAAATATTATAAAAC
1 AATTAAAAATAATAATTTAAAATATTATAAAAC
636923 TAATAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 18 0.62
33 2 0.07
34 9 0.31
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (34 bp):
AATTAAAAATAATAATTTAAAATATTATAAAACA
Found at i:637002 original size:21 final size:21
Alignment explanation
Indices: 636978--637024 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
636968 TTATATTATT
*
636978 AAAAAT-ATATTTAATATTTA
1 AAAAATAATATTTAAAATTTA
636998 AAAAATAATATTTAAAATTTTA
1 AAAAATAATATTTAAAA-TTTA
637020 AAAAA
1 AAAAA
637025 GTGCTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 6 0.25
21 9 0.38
22 9 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAAATAATATTTAAAATTTA
Found at i:637734 original size:30 final size:31
Alignment explanation
Indices: 637700--637759 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
637690 ATCATAATAT
* *
637700 AAAATATTATGAAACAAATTA-AAAATATTA
1 AAAATATTATAAAACAAATAATAAAATATTA
*
637730 AAAATATTATAAAACTAATAATAAAATATT
1 AAAATATTATAAAACAAATAATAAAATATT
637760 TAGATGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (31 bp):
AAAATATTATAAAACAAATAATAAAATATTA
Found at i:637794 original size:21 final size:21
Alignment explanation
Indices: 637778--637827 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
637768 TTATATTATT
637778 AAAAA-AATATTTAATATTTA
1 AAAAATAATATTTAATATTTA
* *
637798 AAAAATAATATTTAAAATTGA
1 AAAAATAATATTTAATATTTA
637819 AAAAATAAT
1 AAAAATAAT
637828 TTCAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 5 0.19
21 22 0.81
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
AAAAATAATATTTAATATTTA
Found at i:637843 original size:34 final size:34
Alignment explanation
Indices: 637793--637860 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
637783 AATATTTAAT
637793 ATTTAAAAAATAATATTTAAAA-TTGAAAAAATA
1 ATTTAAAAAATAATATTTAAAATTTGAAAAAATA
* *
637826 ATTTCAAAAATATATATTTAAAATTTTAAAAAATA
1 ATTTAAAAAATA-ATATTTAAAATTTGAAAAAATA
637861 TATATTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 11 0.35
34 10 0.32
35 10 0.32
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (34 bp):
ATTTAAAAAATAATATTTAAAATTTGAAAAAATA
Found at i:637896 original size:46 final size:44
Alignment explanation
Indices: 637833--637919 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 44
637823 ATAATTTCAA
* *
637833 AAATATATATTTAAAATTTTAAAAAATATATATTATAAAAAATTTC
1 AAATATACATTTAAAATTTTAAAAAAT-TA-ATAATAAAAAATTTC
* **
637879 AAATATACATTTTAAATTTTTTAAAATTAATAATAAAAAAT
1 AAATATACATTTAAAATTTTAAAAAATTAATAATAAAAAAT
637920 AAAATAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 11 0.31
45 2 0.06
46 23 0.64
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (44 bp):
AAATATACATTTAAAATTTTAAAAAATTAATAATAAAAAATTTC
Found at i:637905 original size:23 final size:23
Alignment explanation
Indices: 637832--637905 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
637822 AATAATTTCA
* **
637832 AAAATATATATTTAAAATTTTAA
1 AAAATATATATTTTAAATTTTTT
* ***
637855 AAAATATATATTATAAAAAATTT
1 AAAATATATATTTTAAATTTTTT
* *
637878 CAAATATACATTTTAAATTTTTT
1 AAAATATATATTTTAAATTTTTT
637901 AAAAT
1 AAAAT
637906 TAATAATAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (23 bp):
AAAATATATATTTTAAATTTTTT
Found at i:637929 original size:13 final size:14
Alignment explanation
Indices: 637901--637941 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
637891 TAAATTTTTT
*
637901 AAAATTAATAAT-A
1 AAAAATAATAATAA
637914 AAAAATAA-AATAA
1 AAAAATAATAATAA
637927 AAAAATAATAATAA
1 AAAAATAATAATAA
637941 A
1 A
637942 GACAAAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 3 0.12
13 16 0.64
14 6 0.24
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAATAATAATAA
Found at i:637999 original size:32 final size:30
Alignment explanation
Indices: 637919--637999 Score: 81
Period size: 32 Copynumber: 2.6 Consensus size: 30
637909 TAATAAAAAA
*
637919 TAAAATAAAAAAATAATAATAAAGACAAAACT
1 TAAAA-AAAAAAATAA-AAAAAAGACAAAACT
** *
637951 TAAAAAAAGTATTAAAAAAAAGGACAAAACTT
1 TAAAAAAAAAAATAAAAAAAA-GACAAAAC-T
*
637983 TAAAAAAAAAAGTAAAA
1 TAAAAAAAAAAATAAAA
638000 GGGTGTCAGG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 5 0.12
31 15 0.38
32 20 0.50
ACGTcount: A:0.72, C:0.05, G:0.06, T:0.17
Consensus pattern (30 bp):
TAAAAAAAAAAATAAAAAAAAGACAAAACT
Found at i:645038 original size:210 final size:209
Alignment explanation
Indices: 644392--645880 Score: 1621
Period size: 210 Copynumber: 7.2 Consensus size: 209
644382 TGTCAAGAAC
* * * * * * *
644392 TTCAAGAGATGAGCACCTTTCTGTTATTGGAACAATTTCCAGTTTGTTGCACCCAGATATA-CAT
1 TTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATC-T
** * * *
644456 A-AACTCTGAAGAGACGAAAATCCTTTCAAATCTGGAATGGAACTTAAATTAGGGCAAAG-C-CT
65 AGATTTC-GAAGA-AGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTA--GCACAGCCACT
* * * * * * * ** * * * *
644518 TATCCTCAATTCTTTGACAAAAGAGGAAATAGAAAACCCGTCTCCTACCTTGCTT-AGTTTTTCA
126 TAGCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAAG-TTTTGA
*
644582 CACTGA-AAAATGTGAAGCTT
190 CAC-GAGGAAATGTGAAGCTT
* * * * * * * *
644602 TTCAAGAAAAGGAA-GTCTT-C-C-TGTTGGAATAACTTCCAGGTTG-T-CACATTTAGATATAT
1 TTCAAG-AGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCAC-TCT-GATATAT
* * * * * **
644661 CTAAAGTTCGAAG-A-G---A---TTCCAAATCTGGAATGGAATTTAAGTTACCACAATGGGA--
63 CTAGATTTCGAAGAAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCAC-A-GCCACT
* * * * * * *
644716 TAGCTTTAACTCTTTGAGACAAGTGGCA-ATAGGCAACCAATCTTCTATCTTGC------TTTGA
126 TAGCTTTAATTCTTTAAGATAAGTGG-AGGTAGACAACCCATCTCCTATCTTGCTTAAGTTTTGA
** *
644774 CACCCGGAAATGAGAAGCTT
190 CACGAGGAAATGTGAAGCTT
* * * * * *
644794 TTCAAGAGATGAACAT-TGTCCTCTTATCGGAACAATTTCCAGTTCGTTGCAGTTTGATAAATCT
1 TTCAAGAGATGAACATCT-TCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCT
* * * * * ** *
644858 AAAATTT-TAAGAGAGGAAAATCCTTCCAAATCTAGAATGGAACATAAATTAGGACAATCGCTTA
65 -AGATTTCGAAGA-AGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTA
*
644922 ACTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAAGTTTTGACAC
128 GCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAAGTTTTGACAC
*
644987 GAGGAAATGTGAAACTT
193 GAGGAAATGTGAAGCTT
*
645004 TTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCTA
1 TTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCTA
*
645069 GATTTCGAAGAACGGAAAATCCTTCCAAATCTGGAATGGAACTTAATTTAGCACAGCCACTTAGC
66 GATTTCGAAGAA-GGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTAGC
* * * *
645134 TTTAATTCTATAAGATAAGCGGAAGTCGACAA-CCAGTCTCCTATCTTGCTTAAGTTTTGACACG
130 TTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCA-TCTCCTATCTTGCTTAAGTTTTGACACG
645198 AGGAAATGTGAAGCTT
194 AGGAAATGTGAAGCTT
* *
645214 TTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTACACTCTGATATATCTA
1 TTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCTA
645279 GATTTCGAAGAACGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTAGC
66 GATTTCGAAGAA-GGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTAGC
* * * *
645344 TTTAATTCTATAAGATAAGTGGAAGTCGACAA-CCAGTCTCCTATCTTGCTAAAGTTTTGACACG
130 TTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCA-TCTCCTATCTTGCTTAAGTTTTGACACG
645408 AGGAAATGTGAAGCTT
194 AGGAAATGTGAAGCTT
* * *
645424 TTGAAGAGATGAACATCTTCCCCTTATTGGAACAATTTCCAGTTTGTTGCACTCTGATATATCTA
1 TTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCTA
645489 GATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTAGC
66 GATTTCGAAG-AAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTAGC
* *
645554 TTTAATTCTTTAAGACAACTGGAGGTAGACAACCCATCTCCTATCTTGCTTAAGTTTTGACACGA
130 TTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAAGTTTTGACACGA
645619 GGAAATGTGAAGCTT
195 GGAAATGTGAAGCTT
645634 TTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCTA
1 TTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCTA
*
645699 GATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGAGCTTAAATTAGCACAGCCACTTAGC
66 GATTTCGAAG-AAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTAGC
* ** *
645764 TTTAATTCTTTAAGACAAGTGGAGGTAGACAACCCGCCTCCTATCTCGCTTAA-TTCCTT-ACAC
130 TTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAAGTT--TTGACAC
*** * **
645827 TCTGAAATG-CAAAATT
193 GAGGAAATGTGAAGCTT
*
645843 CTTCAAGAGATGAACATATTCCTGC-TATTGGAACAATT
1 -TTCAAGAGATGAACATCTTCCT-CTTATTGGAACAATT
645881 CCCAAGCGTC
Statistics
Matches: 1108, Mismatches: 124, Indels: 94
0.84 0.09 0.07
Matches are distributed among these distances:
191 6 0.01
192 27 0.02
193 1 0.00
194 1 0.00
195 27 0.02
196 11 0.01
197 4 0.00
198 65 0.06
199 1 0.00
201 2 0.00
203 2 0.00
204 70 0.06
205 4 0.00
206 1 0.00
207 30 0.03
208 4 0.00
209 16 0.01
210 823 0.74
211 13 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (209 bp):
TTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCCAGTTTGCTGCACTCTGATATATCTA
GATTTCGAAGAAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAGCCACTTAGCT
TTAATTCTTTAAGATAAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAAGTTTTGACACGAG
GAAATGTGAAGCTT
Found at i:645919 original size:210 final size:210
Alignment explanation
Indices: 644769--645816 Score: 1650
Period size: 210 Copynumber: 5.0 Consensus size: 210
644759 TCTATCTTGC
** * * *
644769 TTTGACACCCGGAAATGAGAAGCTTTTCAAGAGATGAACAT-TGTCCTCTTATCGGAACAATTTC
1 TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCT-TCCTCTTATTGGAACAATTTC
* * * * * * * * *
644833 CAGTTCGTTGCAGTTTGATAAATCTAAAATTT-TAAGAGAGGAAAATCCTTCCAAATCTAGAATG
65 CAGTTTGCTGCACTCTGATATATCT-AGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATG
* * ** * * *
644897 GAACATAAATTAGGACAATCGCTTAACTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCATC
129 GAACTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCGTC
644962 TCCTATCTTGCTTAAGT
194 TCCTATCTTGCTTAAGT
*
644979 TTTGACACGAGGAAATGTGAAACTTTTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
1 TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
*
645044 AGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAACGGAAAATCCTTCCAAATCTGGAATGGA
66 AGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGA
* * * * * *
645109 ACTTAATTTAGCACAGCCACTTAGCTTTAATTCTATAAGATAAGCGGAAGTCGACAACCAGTCTC
131 ACTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCGTCTC
645174 CTATCTTGCTTAAGT
196 CTATCTTGCTTAAGT
645189 TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
1 TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
* *
645254 AGTTTGCTACACTCTGATATATCTAGATTTCGAAGAACGGAAAATCCTTCCAAATCTGGAATGGA
66 AGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGA
* * * *
645319 ACTTAAATTAGCACAGCCACTTAGCTTTAATTCTATAAGATAAGTGGAAGTCGACAACCAGTCTC
131 ACTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCGTCTC
*
645384 CTATCTTGCTAAAGT
196 CTATCTTGCTTAAGT
*
645399 TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCTTCCCCTTATTGGAACAATTTCC
1 TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
*
645464 AGTTTGTTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGA
66 AGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGA
* * *
645529 ACTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGACAACTGGAGGTAGACAACCCATCTC
131 ACTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCGTCTC
645594 CTATCTTGCTTAAGT
196 CTATCTTGCTTAAGT
*
645609 TTTGACACGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
1 TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
645674 AGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGA
66 AGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGA
* * *
645739 GCTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGACAAGTGGAGGTAGACAACCCGCCTC
131 ACTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCGTCTC
*
645804 CTATCTCGCTTAA
196 CTATCTTGCTTAA
645817 TTCCTTACAC
Statistics
Matches: 782, Mismatches: 54, Indels: 4
0.93 0.06 0.00
Matches are distributed among these distances:
209 5 0.01
210 776 0.99
211 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (210 bp):
TTTGACACGAGGAAATGTGAAGCTTTTGAAGAGATGAACATCTTCCTCTTATTGGAACAATTTCC
AGTTTGCTGCACTCTGATATATCTAGATTTCGAAGAAAGGAAAATCCTTCCAAATCTGGAATGGA
ACTTAAATTAGCACAGCCACTTAGCTTTAATTCTTTAAGATAAGTGGAGGTAGACAACCCGTCTC
CTATCTTGCTTAAGT
Found at i:655781 original size:210 final size:210
Alignment explanation
Indices: 655447--657065 Score: 2210
Period size: 210 Copynumber: 7.7 Consensus size: 210
655437 ATTCGAACAA
* * * *
655447 TTTCCAGATT-GTTGCAGTCTGATATATTTAAAATAT-GAAGAGAGGAAAATCCTAT-TAAATCT
1 TTTCCAG-TTCGTGGCAGTCTGATATATCTAAAAT-TCGGAGAGAGGAAAATCCT-TCCAAATCT
* * * ***** ** * *
655509 GGAATGGAATTTAAGTTACCACAATGGGATAGCTTTAACTT-TTTGAG-GTAAGTGGCGGTAGAC
63 GGAATGGAACTTAAATTAGCACAACCACTTAGCTTTAA-TTCTTCAAGACT-AGTGGAGGTAGAC
* * * * * * * * *
655572 AGCCCGTTTCCTATCTTGCTTAATTTAGGACACCAAGAAATGAGAAACTTTTCAAGAGATAAACA
126 AACCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACA
*
655637 TCTTCCTCTTATAGGAATAG
191 TCTTCCTCTTATCGGAATAG
* * * *
655657 TTTTCAGTTCGTGGCAGTTTGATATATCTAAAATTCGGAGAGAGGAAATTCCTTCTAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
* * * * * * *
655722 ATGAAATTTAAATTAGCACAACCAATTGGCTTTACTTTTTCAAGACTAGTGGAGGTAGACAACCG
66 ATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
* * *
655787 GTCTCCTATCTTGCTTAATTTTGGACATGA-GAAATTGTAAAGCTTTTCAAGAGATGAACATCTT
131 GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAA-CGTGAAGCTTTTCAAGAGATGAACATCTT
*
655851 CCTCTTACCGGAATAG
195 CCTCTTATCGGAATAG
*
655867 TTTCCAGTTCGTGGCAGTCTGATATATTTAAAATTCGGAGAGAGGAAAATCCTAT-CAAATCTGG
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCT-TCCAAATCTGG
* * *
655931 AATGGAATTTAAATTAGCACAATCATTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACC
65 AATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACC
*
655996 CATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTT
130 CGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTT
* * * *
656061 CCTCTAATTGGAACAA
195 CCTCTTATCGGAATAG
* * * *
656077 TTTCCAATTCGTGGCAGCCTGATATATCTAAAATTCGGAGAGAGGAAATTTCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
* * * *
656142 ATGGAACTTAAATTAGCACAACCACTTAACTTTAATTCTTCAAGAATAGTGGAGGTAGACATCCT
66 ATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
656207 GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTC
* *
656272 CTCTTATCAGAACAG
196 CTCTTATCGGAATAG
* *
656287 TTTCCAATTCGTGGCAGTCTGATATATCTAAAATTTGGAGAGAGGAAAATCCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
* * *
656352 ATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCTTCAAGAATAGTGGAGGTAGACAACCC
66 ATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
656417 GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTC
*
656482 CT-TCTATCGGAACAG
196 CTCT-TATCGGAATAG
* *
656497 TTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
* *
656562 ATGGAACTGAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
66 ATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
* * * * * *
656627 ATCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTTAAGAGATGAATATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTC
656692 CTCTTATCGGAATAG
196 CTCTTATCGGAATAG
* * * * * *
656707 TTTCTAGTTTGTGGCAGTTTAATATATCTAAAATTCGGAGAGAAGAAAATCCTACCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
* * *
656772 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAGCCA
66 ATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
* * * * *
656837 GTCTCCGATCTTGCATAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGGACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTC
656902 CTCTTATCGGAATAG
196 CTCTTATCGGAATAG
*
656917 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATTCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
* * * * * * *
656982 ATGAAACTTAATTTGGCACAATCACTTAGCTTTAATTCTCCAAGACAAATGGAGGTAGACAACCC
66 ATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
* *
657047 CTCTCCAATCTTGCTTAAT
131 GTCTCCTATCTTGCTTAAT
657066 CCATTGCACT
Statistics
Matches: 1263, Mismatches: 135, Indels: 22
0.89 0.10 0.02
Matches are distributed among these distances:
209 12 0.01
210 1244 0.98
211 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (210 bp):
TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGA
ATGGAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCC
GTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTC
CTCTTATCGGAATAG
Found at i:657355 original size:630 final size:626
Alignment explanation
Indices: 655559--657355 Score: 1657
Period size: 630 Copynumber: 2.9 Consensus size: 626
655549 TTTTGAGGTA
* * * * * * * * * * *
655559 AGTGGCGGTAGACAGCCCGTTTCCTATCTTGCTTAATTTAGGACACCAAGAAATGAGAAACTTTT
1 AGTGGAGGTAGACAGCCAGTCTCCGATCTTGCATAATTTTGGACACGAGGAAACGTGAAGCTTTT
* * * * *
655624 CAAGAGATAAACATCTTCCTCTTAT-AGGAATAGTTTTCAGTTCGTGGCAGTTTGATATATCTAA
66 CAAGAGATGAACATCTTCCTCTTATCA-GAACAGTTTCCAATTCGTGGCAGTCTGATATATCTAA
* * * * * *
655688 AATTCGGAGAGAGGAAATTCCTTCTAAATCTGGAATGAAATTTAAATTAGCACAACCAATTGGCT
130 AATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCT
* * * * * ** * * *
655753 TTACTTTTTCAAGACTAGTGGAGGTAGACAACCGGTCTCCTATCTTGCTTAATTTTGGACATGA-
195 TTAATTCTCCAAGAATAATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAATATTGGACACGAG
* * * * * * * * *
655817 GAAATTGTAAAGCTTTTCAAGAGATGAACATCTTCCT-CTTACCGGAATAGTTTCCAGTTCGTGG
260 GAAACTG-AAA-ATTTTCAAGAGATGAACATATTCCTGC-TATCGGAAAAATTCCCAGCTCG-CG
* * * * ** * * **
655881 CAGTCTGATATATTTAAAATTCGGAGAGAGGAAAATCCTAT-CAAATCTGGAATGGAATTTAAAT
321 CAATCTAAAACATAGAAAATTCGAAGAGAGGAAAACCCT-TCCAAATCTGGAATGGAA-CGAAAT
* * * * * * * *
655945 TAGC-ACAATCATTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCCATCTCCTATCTT
384 TA-CAACAACCACTTAGC-TCAACTCCTCAAGACTAGTGGAAGTAGACAACCCATCCCCAATCTT
** * * * * * * **
656009 GCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTAATTGGAA
447 GCTTAATCGTGGACACAAGCAAACATGAAGCTTTTTAAGAGATAAACATCTTCCTCTCAGCGGAA
* ** * ** * * * * *
656074 CAATTTCCAATTCGTGGCAGCCTGATATATCTAAAATTCGGAGAGAGGAAATTTCTTCCAAATCT
512 CACTTTCCAATAAGGGGCAGTTTAATATATCTAAAATTCGGAGAGAAGAAAATCCTACCAAATCT
*
656139 GGAATGGAACTTAAATTAGCACAACCACTTAACTTTAATTCTTCAAGAAT
577 GGAATGGAACTTAAATTAGCACAACCACCTAACTTTAATTCTTCAAGAAT
* * * *
656189 AGTGGAGGTAGACATCCTGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTT
1 AGTGGAGGTAGACAGCCAGTCTCCGATCTTGCATAATTTTGGACACGAGGAAACGTGAAGCTTTT
656254 CAAGAGATGAACATCTTCCTCTTATCAGAACAGTTTCCAATTCGTGGCAGTCTGATATATCTAAA
66 CAAGAGATGAACATCTTCCTCTTATCAGAACAGTTTCCAATTCGTGGCAGTCTGATATATCTAAA
* * *
656319 ATTTGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTT
131 ATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTT
* * * * *
656384 TAATTCTTCAAGAATAGTGGAGGTAGACAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAGG
196 TAATTCTCCAAGAATAATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAATATTGGACACGAGG
** * * * * * * *
656449 AAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCTATCGGAACAGTTTCCAGCTCGTGGCAG
261 AAAC-TGAAAATTTTCAAGAGATGAACATATTCCTGCTATCGGAAAAATTCCCAGCTCG-CGCAA
* * ** * * *
656514 TCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTGAAATTAGA
324 TCTAAAACATAGAAAATTCGAAGAGAGGAAAACCCTTCCAAATCTGGAATGGAAC-GAAATTACA
* * * * *
656579 ACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCCATCTCCAATCTTGCTTA
388 ACAACCACTTAGC-TCAACTCCTCAAGACTAGTGGAAGTAGACAACCCATCCCCAATCTTGCTTA
** * * * * * * *
656644 ATTTTGGACACAAGGAAACATGAAGCTTTTTAAGAGATGAATATCTTCCTCTTATCGGAATAGTT
452 ATCGTGGACACAAGCAAACATGAAGCTTTTTAAGAGATAAACATCTTCCTCTCAGCGGAACACTT
* * ** *
656709 TCTAGTTTGTGGCAGTTTAATATATCTAAAATTCGGAGAGAAGAAAATCCTACCAAATCTGGAAT
517 TCCAATAAGGGGCAGTTTAATATATCTAAAATTCGGAGAGAAGAAAATCCTACCAAATCTGGAAT
* *
656774 GGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACT
582 GGAACTTAAATTAGCACAACCACCTAACTTTAATTCTTCAAGAAT
* *
656819 AGTGGAGGTAGACAGCCAGTCTCCGATCTTGCATAATTTTGGACATGAGGAAATGTGAAGCTTTT
1 AGTGGAGGTAGACAGCCAGTCTCCGATCTTGCATAATTTTGGACACGAGGAAACGTGAAGCTTTT
* * * *
656884 CAAGAGATGGACATCTTCCTCTTATCGGAATAGTTTCCAGTTCGTGGCAGTCTGATATATCTAAA
66 CAAGAGATGAACATCTTCCTCTTATCAGAACAGTTTCCAATTCGTGGCAGTCTGATATATCTAAA
* * * * *
656949 ATTCGGAGAGAGGAAAATTCTTCCAAATCTGGAATGAAACTTAATTTGGCACAATCACTTAGCTT
131 ATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTT
657014 TAATTCTCCAAGACA-AATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAATCCATT-G-CACT
196 TAATTCTCCAAGA-ATAATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAAT--ATTGGACAC-
* * *
657076 TA-GAAA-TGCAAAATTCTTTAAGAGATGAACATATTCCTGCTATTGGAAAAATTCCCAAGCTTC
257 GAGGAAACTG-AAAATT-TTCAAGAGATGAACATATTCCTGCTATCGGAAAAATTCCC-AGC-TC
* * * * *
657139 -CGCAATC-AGAAACATAGACACTTCGAAGAGCGGAAAACCCATT-TAAATTTGGAATTGAGAAC
318 GCGCAATCTA-AAACATAGAAAATTCGAAGAGAGGAAAACCC-TTCCAAATCTGGAA-TG-GAAC
* * * **
657201 -AAATCT-CCAC-ACTTCACTATAG-TCAGCTCCTCAAGAAC-CGTGGAAGTAG-CTAGTCCATC
379 GAAAT-TACAACAAC--CACT-TAGCTCAACTCCTCAAG-ACTAGTGGAAGTAGAC-AACCCATC
* *
657260 CCCGATAC-TGCTTAATCGT-GA-ACAATCCTCAATACA-G-AGCTTTTTAAGAGATAAACAT-T
438 CCCAAT-CTTGCTTAATCGTGGACACAA---GCAA-ACATGAAGCTTTTTAAGAGATAAACATCT
*
657319 GTCC-CGTCAGGGGAACACTTTCCAATAAGGGGCAGTT
498 -TCCTC-TCAGCGGAACACTTTCCAATAAGGGGCAGTT
657356 AGAAACAAGC
Statistics
Matches: 998, Mismatches: 137, Indels: 64
0.83 0.11 0.05
Matches are distributed among these distances:
628 6 0.01
629 13 0.01
630 934 0.94
631 29 0.03
632 16 0.02
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (626 bp):
AGTGGAGGTAGACAGCCAGTCTCCGATCTTGCATAATTTTGGACACGAGGAAACGTGAAGCTTTT
CAAGAGATGAACATCTTCCTCTTATCAGAACAGTTTCCAATTCGTGGCAGTCTGATATATCTAAA
ATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTT
TAATTCTCCAAGAATAATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAATATTGGACACGAGG
AAACTGAAAATTTTCAAGAGATGAACATATTCCTGCTATCGGAAAAATTCCCAGCTCGCGCAATC
TAAAACATAGAAAATTCGAAGAGAGGAAAACCCTTCCAAATCTGGAATGGAACGAAATTACAACA
ACCACTTAGCTCAACTCCTCAAGACTAGTGGAAGTAGACAACCCATCCCCAATCTTGCTTAATCG
TGGACACAAGCAAACATGAAGCTTTTTAAGAGATAAACATCTTCCTCTCAGCGGAACACTTTCCA
ATAAGGGGCAGTTTAATATATCTAAAATTCGGAGAGAAGAAAATCCTACCAAATCTGGAATGGAA
CTTAAATTAGCACAACCACCTAACTTTAATTCTTCAAGAAT
Found at i:660694 original size:43 final size:42
Alignment explanation
Indices: 660633--660869 Score: 234
Period size: 43 Copynumber: 5.7 Consensus size: 42
660623 TAGCTTTGTT
*
660633 GCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTTACAAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTT-TCTCACAAACGCC
* *
660676 GCTAAAGACCAAGACCTTTAGTGGCGCTTTACCCACAAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTT-CTCACAAACGCC
* * * *
660719 GCTAAAGACCAAGACCTTTAACGACACTTT-TC-C---C-AC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTTCTCACAAACGCC
* * * * *
660755 GCTAAAGACCACGACTTTTTGCGGCGCTTTTCCCACGAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGC-TTTCTCACAAACGCC
* * *
660798 GCTAAAGACCAAGACCTTTAGCAGCGCTTTTATCACAAACGCT
1 GCTAAAGACCAAGACCTTTAGCGGCGC-TTTCTCACAAACGCC
* **
660841 GCTACAGACCATCACCTTTAGCGGCGCTT
1 GCTAAAGACCAAGACCTTTAGCGGCGCTT
660870 CTAGCGAAAA
Statistics
Matches: 157, Mismatches: 29, Indels: 17
0.77 0.14 0.08
Matches are distributed among these distances:
36 22 0.14
37 4 0.03
38 1 0.01
39 1 0.01
40 1 0.01
41 1 0.01
42 4 0.03
43 123 0.78
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (42 bp):
GCTAAAGACCAAGACCTTTAGCGGCGCTTTCTCACAAACGCC
Found at i:660850 original size:122 final size:122
Alignment explanation
Indices: 660633--660860 Score: 314
Period size: 122 Copynumber: 1.9 Consensus size: 122
660623 TAGCTTTGTT
** *
660633 GCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTTACAAACGCCGCTAAAGACCAAGACCTTTAGT
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGC
* *
660698 GGCGCTTTACCCACAAACGCCGCTAAAGACCAAGACCTTTAACGACACTTTTCCCAC
66 AGCGCTTTACCCACAAACGCCGCTAAAGACCAACACCTTTAACGACACTTTTCCCAC
* * * * *
660755 GCTAAAGACCACGACTTTTTGCGGCGCTTTTCCCACGAACGCCGCTAAAGACCAAGACCTTTAGC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGC
* * * *
660820 AGCGCTTTTA-TCACAAACGCTGCTACAGACCATCACCTTTA
66 AGCGC-TTTACCCACAAACGCCGCTAAAGACCAACACCTTTA
660861 GCGGCGCTTC
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
122 87 0.96
123 4 0.04
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (122 bp):
GCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGC
AGCGCTTTACCCACAAACGCCGCTAAAGACCAACACCTTTAACGACACTTTTCCCAC
Found at i:660881 original size:43 final size:43
Alignment explanation
Indices: 660792--660889 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
660782 TTTTCCCACG
* * *
660792 AACGCCGCTAAAGACCAAGACCTTTAGCAGCGCTTTTATCACA
1 AACGCCGCTAAAGACCAACACCTTTAGCAGCGCTTCTAGCACA
* * * *
660835 AACGCTGCTACAGACCATCACCTTTAGCGGCGCTTCTAGCGA-A
1 AACGCCGCTAAAGACCAACACCTTTAGCAGCGCTTCTAGC-ACA
660878 AACGCCGCTAAA
1 AACGCCGCTAAA
660890 AACATAAACT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
43 44 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.19
Consensus pattern (43 bp):
AACGCCGCTAAAGACCAACACCTTTAGCAGCGCTTCTAGCACA
Found at i:661280 original size:20 final size:22
Alignment explanation
Indices: 661249--661292 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
661239 CACATACACC
661249 AATGCATAC-AAATAAAAACTT
1 AATGCATACAAAATAAAAACTT
*
661270 AATGC-TACAAAATAAAAATTT
1 AATGCATACAAAATAAAAACTT
661291 AA
1 AA
661293 GCTTCCTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (22 bp):
AATGCATACAAAATAAAAACTT
Found at i:664095 original size:42 final size:43
Alignment explanation
Indices: 664023--664104 Score: 107
Period size: 42 Copynumber: 1.9 Consensus size: 43
664013 ATTAAAAAAT
*
664023 TATTTTAAAAATAAAAAAATAAAAATAAAAT-TATTTTTAAAG
1 TATTTTAAAAATAAAAAAATAAAAATAAAATATATATTTAAAG
*
664065 TATTTTAAAATTAAAAATAA-AAACAA-AAAATATATATTTA
1 TATTTTAAAAATAAAAA-AATAAA-AATAAAATATATATTTA
664105 TTATATTCGG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
42 24 0.69
43 11 0.31
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (43 bp):
TATTTTAAAAATAAAAAAATAAAAATAAAATATATATTTAAAG
Found at i:665322 original size:14 final size:14
Alignment explanation
Indices: 665305--665344 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
665295 CCCTAAATCA
665305 CTAACCACAAACCC
1 CTAACCACAAACCC
* *
665319 CTAACCTCTAACCC
1 CTAACCACAAACCC
665333 CTAACCACAAAC
1 CTAACCACAAAC
665345 ATTTAACCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.12
Consensus pattern (14 bp):
CTAACCACAAACCC
Found at i:665549 original size:14 final size:14
Alignment explanation
Indices: 665520--665584 Score: 69
Period size: 14 Copynumber: 4.6 Consensus size: 14
665510 CGTATCCATA
*
665520 AACCCTAAATCCCT
1 AACCCTTAATCCCT
* *
665534 AACTCTTAATCTCT
1 AACCCTTAATCCCT
665548 AACCCTTAATCCCT
1 AACCCTTAATCCCT
* *
665562 AACCCCTAAATCAC-
1 AA-CCCTTAATCCCT
665576 AACCCTTAA
1 AACCCTTAA
665585 ACCAAAACCC
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
13 6 0.14
14 27 0.64
15 9 0.21
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (14 bp):
AACCCTTAATCCCT
Found at i:665579 original size:28 final size:29
Alignment explanation
Indices: 665520--665598 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 29
665510 CGTATCCATA
* * * *
665520 AACCCTAAATCCCTAA-CTCTTAATCTCT
1 AACCCTTAATCCCTAACCCCTAAATCACT
665548 AACCCTTAATCCCTAACCCCTAAATCAC-
1 AACCCTTAATCCCTAACCCCTAAATCACT
* **
665576 AACCCTTAAACCAAAACCCCTAA
1 AACCCTTAATCCCTAACCCCTAA
665599 TCCATAGTCC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 35 0.81
29 8 0.19
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (29 bp):
AACCCTTAATCCCTAACCCCTAAATCACT
Found at i:665716 original size:14 final size:14
Alignment explanation
Indices: 665671--665708 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
665661 ATCCTAAATT
665671 AACCATATATCCTA
1 AACCATATATCCTA
*
665685 AACCATATACCCTA
1 AACCATATATCCTA
665699 AACCATATAT
1 AACCATATAT
665709 ATTAAACCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (14 bp):
AACCATATATCCTA
Found at i:666094 original size:41 final size:40
Alignment explanation
Indices: 666036--666231 Score: 241
Period size: 41 Copynumber: 4.8 Consensus size: 40
666026 AAATGTTTTT
*
666036 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCAAGAGCATTA
1 GCGGCGC-TTTTAAAAAACGCCGCTAAAGCCAAGAGCATTA
*
666077 GCGGCGCTTTATAAAAAACGCCGCTAAAGCCCAGAGCATTA
1 GCGGCGCTTT-TAAAAAACGCCGCTAAAGCCAAGAGCATTA
* * *
666118 GCGGCGCTTTACAAAAAACGCCACTAAAGCCCAGAGCATTA
1 GCGGCGCTTT-TAAAAAACGCCGCTAAAGCCAAGAGCATTA
* * * *
666159 GCGGCGCTTTTACAAAAATGCTGCTAAATCCCAA-AGAATTA
1 GCGGCGCTTTTA-AAAAACGCCGCTAAA-GCCAAGAGCATTA
666200 GCGGCGCTTTTCCAAAAAACGCCGCTAAAGCC
1 GCGGCGCTTTT--AAAAAACGCCGCTAAAGCC
666232 CCAAATGGTC
Statistics
Matches: 136, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
40 4 0.03
41 115 0.85
42 16 0.12
43 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (40 bp):
GCGGCGCTTTTAAAAAACGCCGCTAAAGCCAAGAGCATTA
Found at i:666176 original size:82 final size:83
Alignment explanation
Indices: 666036--666232 Score: 283
Period size: 82 Copynumber: 2.4 Consensus size: 83
666026 AAATGTTTTT
* *
666036 GCGGCGCTTTTTC-AAAAACGCCGCTAAAGCCAAGAGCATTAGCGGCGCTTTATAAAAAACGCCG
1 GCGGCGCTTTTACAAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCGCTTTATAAAAAACGCCG
* *
666100 CTAAAGCCCAGAGCATTA
66 CTAAAGCCCAAAGAATTA
* * *
666118 GCGGCGC-TTTACAAAAAACGCCACTAAAGCCCAGAGCATTAGCGGCGCTTT-TACAAAAATGCT
1 GCGGCGCTTTTACAAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCGCTTTATA-AAAAACGCC
*
666181 GCTAAATCCCAAAGAATTA
65 GCTAAAGCCCAAAGAATTA
*
666200 GCGGCGCTTTTCCAAAAAACGCCGCTAAAGCCC
1 GCGGCGCTTTTACAAAAAACGCCGCTAAAGCCC
666233 CAAATGGTCT
Statistics
Matches: 102, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
81 6 0.06
82 73 0.72
83 23 0.23
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (83 bp):
GCGGCGCTTTTACAAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCGCTTTATAAAAAACGCCG
CTAAAGCCCAAAGAATTA
Found at i:672657 original size:210 final size:210
Alignment explanation
Indices: 672441--673584 Score: 1806
Period size: 210 Copynumber: 5.4 Consensus size: 210
672431 GCAAGTGGCT
* * * * *
672441 GTAGACAACCCATCTCCTATCTTGCTTAATTTAGGACACCAGGAAATGAGAAGCTTCTCAAGAGA
1 GTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
* ** * * * * * *
672506 TGGACATCTTCCTCTTATCAAAACAGTTTTCAGTTCATGACAGTTTGATATATCTAAAATTCGTA
66 TGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGA
* * * * *
672571 GAGAGGAAAATCCTTCAAAATCTGGAATGGAACTTAAATTAGCACAACCAATTAGCTTTACTTTT
131 GAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCT
*
672636 TCAAGACTAGTGGAG
196 TCAAGAATAGTGGAG
* * *
672651 GTAGACAA-CCAGTCTCCTATCTTGCTTAATTTTGGACACGAGAAAATGTAAAGCTTTTCAAGAG
1 GTAGACAACCCA-TCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAG
* * * * * *
672715 ATGAACATATTCCTCTTACCGGAATAGTTTCCAGTTCGTGGCAGTCTGATATATTTAAAATTTGG
65 ATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGG
*
672780 AGAGAGGAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTC
130 AGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTC
*
672845 TTCAAGACTAGTGGAG
195 TTCAAGAATAGTGGAG
*
672861 GTAGACAACCCATCTCCTATCTTGCTTAATTTTGAACACGAGGAAACGTGAAGCTTTTCAAGAGA
1 GTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
* * *
672926 TGAACATCTTCCTCTAATCGGAACAATTTTCAATTCGTGGCAGTCTGATATATCTAAAATTCGGA
66 TGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGA
* * * * *
672991 GAGAGGAAATTTCTTCCAAATCTGGAATGAAACTTAAATTAGCACAACCACTTAACTTTAATTCT
131 GAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCT
673056 TCAAGAATAGTGGAG
196 TCAAGAATAGTGGAG
* *
673071 GTAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
1 GTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
* * *
673136 TGAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAGTCTGATATACCTAAAATTTGGA
66 TGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGA
*
673201 GAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCT
131 GAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCT
673266 TCAAGAATAGTGGAG
196 TCAAGAATAGTGGAG
* *
673281 GTAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
1 GTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
673346 TGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGA
66 TGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGA
673411 GAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCT
131 GAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCT
673476 TCAAGAATAGTGGAG
196 TCAAGAATAGTGGAG
* *
673491 GTAGATAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
1 GTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
673556 TGAACATCTTCCT-TCTATCGGAACAGTTT
66 TGAACATCTTCCTCT-TATCGGAACAGTTT
673585 CCAGCTGCCA
Statistics
Matches: 867, Mismatches: 64, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
209 4 0.00
210 860 0.99
211 3 0.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (210 bp):
GTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGA
TGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGA
GAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCT
TCAAGAATAGTGGAG
Found at i:672977 original size:420 final size:420
Alignment explanation
Indices: 672303--673588 Score: 1896
Period size: 420 Copynumber: 3.1 Consensus size: 420
672293 AGTTGAGTTC
* * * * * *
672303 CTTCCTGTTATTC-GAACAATTTCCAGATT-GTTGCAGTTTGATATATTTAAAATATGAAGAGAG
1 CTTCCTCTTA-TCGGAACAGTTTCCAG-TTCGTGGCAGTCTGATATATTTAAAATTTGGAGAGAG
* * * * ** ** ** * **
672366 GAAAATCCTACTAAATCTGGAATGAAATTTAAGTTACCACAATGGGATAGTTTTAACTT-TTTGA
64 GAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAA-TTCTTCAA
* * ** * * * *
672430 GGCAAGTGGCTGTAGACAACCCATCTCCTATCTTGCTTAATTTAGGACACCAGGAAATGAGAAGC
128 GACTAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGC
* * ** * * * *
672495 TTCTCAAGAGATGGACATCTTCCTCTTATCAAAACAGTTTTCAGTTCATGACAGTTTGATATATC
193 TTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATC
* * *
672560 TAAAATTCGTAGAGAGGAAAATCCTTCAAAATCTGGAATGGAACTTAAATTAGCACAACCAATTA
258 TAAAATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAACCACTTA
* * * *
672625 GCTTTACTTTTTCAAGACTAGTGGAGGTAGACAACCAGTCTCCTATCTTGCTTAATTTTGGACAC
323 GCTTTAATTCTTCAAGAATAGTGGAGGTAGACAACCCGTCTCCTATCTTGCTTAATTTTGGACAC
* * *
672690 GAGAAAATGTAAAGCTTTTCAAGAGATGAACAT
388 GAGGAAACGTGAAGCTTTTCAAGAGATGAACAT
* * *
672723 ATTCCTCTTACCGGAATAGTTTCCAGTTCGTGGCAGTCTGATATATTTAAAATTTGGAGAGAGGA
1 CTTCCTCTTATCGGAACAGTTTCCAGTTCGTGGCAGTCTGATATATTTAAAATTTGGAGAGAGGA
*
672788 AAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAC
66 AAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCTTCAAGAC
*
672853 TAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAATTTTGAACACGAGGAAACGTGAAGCTTT
131 TAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTT
* *
672918 TCAAGAGATGAACATCTTCCTCTAATCGGAACAATTTTCAATTCGTGGCAGTCTGATATATCTAA
196 TCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAA
* * * *
672983 AATTCGGAGAGAGGAAATTTCTTCCAAATCTGGAATGAAACTTAAATTAGCACAACCACTTAACT
261 AATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAACCACTTAGCT
*
673048 TTAATTCTTCAAGAATAGTGGAGGTAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAG
326 TTAATTCTTCAAGAATAGTGGAGGTAGACAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAG
673113 GAAACGTGAAGCTTTTCAAGAGATGAACAT
391 GAAACGTGAAGCTTTTCAAGAGATGAACAT
* * **
673143 CTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAGTCTGATATACCTAAAATTTGGAGAGAGGA
1 CTTCCTCTTATCGGAACAGTTTCCAGTTCGTGGCAGTCTGATATATTTAAAATTTGGAGAGAGGA
* *
673208 AAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCTTCAAGAA
66 AAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCTTCAAGAC
* *
673273 TAGTGGAGGTAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTT
131 TAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTT
673338 TCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAA
196 TCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAA
* *
673403 AATTTGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCT
261 AATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAACCACTTAGCT
*
673468 TTAATTCTTCAAGAATAGTGGAGGTAGATAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAG
326 TTAATTCTTCAAGAATAGTGGAGGTAGACAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAG
673533 GAAACGTGAAGCTTTTCAAGAGATGAACAT
391 GAAACGTGAAGCTTTTCAAGAGATGAACAT
673563 CTTCCT-TCTATCGGAACAGTTTCCAG
1 CTTCCTCT-TATCGGAACAGTTTCCAG
673589 CTGCCACTAT
Statistics
Matches: 780, Mismatches: 82, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
419 6 0.01
420 774 0.99
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (420 bp):
CTTCCTCTTATCGGAACAGTTTCCAGTTCGTGGCAGTCTGATATATTTAAAATTTGGAGAGAGGA
AAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCTTCAAGAC
TAGTGGAGGTAGACAACCCATCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTT
TCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAA
AATTCGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGCACAACCACTTAGCT
TTAATTCTTCAAGAATAGTGGAGGTAGACAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAG
GAAACGTGAAGCTTTTCAAGAGATGAACAT
Found at i:673656 original size:88 final size:88
Alignment explanation
Indices: 673507--673678 Score: 344
Period size: 88 Copynumber: 2.0 Consensus size: 88
673497 AACCCGTCTC
673507 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCT
1 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCT
673572 ATCGGAACAGTTTCCAGCTGCCA
66 ATCGGAACAGTTTCCAGCTGCCA
673595 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCT
1 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCT
673660 ATCGGAACAGTTTCCAGCT
66 ATCGGAACAGTTTCCAGCT
673679 CGTGGCAGTC
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (88 bp):
CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCT
ATCGGAACAGTTTCCAGCTGCCA
Found at i:673835 original size:298 final size:298
Alignment explanation
Indices: 673297--673883 Score: 1007
Period size: 298 Copynumber: 2.0 Consensus size: 298
673287 AGCCCGTCTC
673297 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTT
1 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTT
* * * *
673362 ATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGAGAGAGGAAAATCCTTC
66 ATCGGAACAGTTTCCAACTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTC
*
673427 CAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAGG
131 CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAGG
* * * *
673492 TAGATAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGAT
196 TAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGAT
673557 GAACATCTTCCT-TCTATCGGAACAGTTTCCAGCTGCCA
261 GAACATCTTCCTCT-TATCGGAACAGTTTCCAGCTGCCA
673595 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCT-TC
1 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCT-
* *
673659 TATCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCTTT
65 TATCGGAACAGTTTCCAACTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTT
*
673724 CCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAG
130 CCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAG
*
673789 GTAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTTAAGAGA
195 GTAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGA
* *
673854 TGTATATCTTCCTCTTATCGGAACAGTTTC
260 TGAACATCTTCCTCTTATCGGAACAGTTTC
673884 AAGTTCGTGG
Statistics
Matches: 272, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
297 1 0.00
298 270 0.99
299 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (298 bp):
CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTT
ATCGGAACAGTTTCCAACTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTC
CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAGG
TAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGAT
GAACATCTTCCTCTTATCGGAACAGTTTCCAGCTGCCA
Found at i:673959 original size:210 final size:210
Alignment explanation
Indices: 673597--674238 Score: 962
Period size: 210 Copynumber: 3.1 Consensus size: 210
673587 AGCTGCCACT
673597 ATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCT-TCTA
1 ATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCT-TA
* * * *
673661 TCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCTTTCC
65 TCGGAACAGTTTCAAGTTCGTGGCAATCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTCC
*
673726 AAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGT
130 AAATCTGGAATGAAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGT
673791 AGACAACCCGTCTCCA
195 AGACAACCCGTCTCCA
* * * * *
673807 ATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTTAAGAGATGTATATCTTCCTCTTAT
1 ATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTTAT
* *
673872 CGGAACAGTTTCAAGTTCGTGGCAATCTAATATATCTAAAATTCGGAGAGAGAAAAATCCTACCA
66 CGGAACAGTTTCAAGTTCGTGGCAATCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCA
* *
673937 AATCTGGAATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTA
131 AATCTGGAATGAAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTA
* * *
674002 GACAGCCAGTCTCCG
196 GACAACCCGTCTCCA
* * *
674017 ATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGGACATCTTCCTCTTAT
1 ATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTTAT
* * * * * * *
674082 CGTAATAGTTTCTAGTTTGTGGCAATCTGATATATCTAAAATACGGAGAGAGGAAAATTCTTCCA
66 CGGAACAGTTTCAAGTTCGTGGCAATCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCA
* * * * *
674147 AATCTGGAATGAAACTTAATTTGGCACAATCACTTAGCTTTAATTCTTCAAGACAAATGGAGGTA
131 AATCTGGAATGAAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTA
* *
674212 GATAACCCCTCTCCA
196 GACAACCCGTCTCCA
674227 ATCTTGCTTAAT
1 ATCTTGCTTAAT
674239 CCATTGCACT
Statistics
Matches: 386, Mismatches: 45, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
210 385 1.00
211 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (210 bp):
ATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTTAT
CGGAACAGTTTCAAGTTCGTGGCAATCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTTCCA
AATCTGGAATGAAACTTAAATTAGCACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGGTA
GACAACCCGTCTCCA
Found at i:674044 original size:508 final size:508
Alignment explanation
Indices: 673087--674093 Score: 1660
Period size: 508 Copynumber: 2.0 Consensus size: 508
673077 AGCCCGTCTC
673087 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTT
1 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTT
* * *
673152 ATCGGAACAATTTCCAATTCGTGGCAGTCTGATATACCTAAAATTTGGAGAGAGGAAAATCCTTC
66 ATCGGAACAATTTCCAACTCGTGGCAGTCTAATATACCTAAAATTCGGAGAGAGGAAAATCCTTC
* *
673217 CAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCTTCAAGAATAGTGGAGG
131 CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAGG
* * * *
673282 TAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGAT
196 TAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGAT
* * *
673347 GAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATATATCTAAAATTTGGAG
261 GAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAATCTAATATATCTAAAATTCGGAG
* * *
673412 AGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCTT
326 AGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACCTAGCTTTAATTCTT
* * *
673477 CAAGAATAGTGGAGGTAGATAACCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGA
391 CAAGAATAGTGGAGGTAGACAACCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGTGA
673542 AGCTTTTCAAGAGATGAACATCTTCCT-TCTATCGGAACAGTTTCCAGCTGCCA
456 AGCTTTTCAAGAGATGAACATCTTCCTCT-TATCGGAACAGTTTCCAGCTGCCA
673595 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCT-TC
1 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCT-
* * * *
673659 TATCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCTTT
65 TATCGGAACAATTTCCAACTCGTGGCAGTCTAATATACCTAAAATTCGGAGAGAGGAAAATCCTT
*
673724 CCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAG
130 CCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAG
*
673789 GTAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTTAAGAGA
195 GTAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGA
* *
673854 TGTATATCTTCCTCTTATCGGAACAG-TTTCAAGTTCGTGGCAATCTAATATATCTAAAATTCGG
260 TGAACATCTTCCTCTTATCGGAACAGTTTTCAA-TTCGTGGCAATCTAATATATCTAAAATTCGG
*
673918 AGAGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTC
324 AGAGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACCTAGCTTTAATTC
* * * *
673983 TTCAAGACTAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACATGAGGAAATGT
389 TTCAAGAATAGTGGAGGTAGACAACCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGT
* * *
674048 GAAGCTTTTCAAGAGATGGACATCTTCCTCTTATCGTAATAGTTTC
454 GAAGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTC
674094 TAGTTTGTGG
Statistics
Matches: 462, Mismatches: 34, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
507 7 0.02
508 454 0.98
509 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (508 bp):
CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTT
ATCGGAACAATTTCCAACTCGTGGCAGTCTAATATACCTAAAATTCGGAGAGAGGAAAATCCTTC
CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAGG
TAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGAT
GAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAATCTAATATATCTAAAATTCGGAG
AGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACCTAGCTTTAATTCTT
CAAGAATAGTGGAGGTAGACAACCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGTGA
AGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTCCAGCTGCCA
Found at i:674274 original size:718 final size:717
Alignment explanation
Indices: 672877--674298 Score: 2169
Period size: 718 Copynumber: 2.0 Consensus size: 717
672867 AACCCATCTC
672877 CTATCTTGCTTAATTTTGAACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTA
1 CTATCTTGCTTAATTTTGAACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTA
* * * *
672942 ATCGGAACAATTTTCAATTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAATTTCTTC
66 ATCGGAACAATTTCCAACTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAATCTCTTC
*
673007 CAAATCTGGAATGAAACTTAAATTAGCACAACCACTTAACTTTAATTCTTCAAGAATAGTGGAGG
131 CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAACTTTAATTCTTCAAGAATAGTGGAGG
* * * *
673072 TAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGAT
196 TAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGAT
* * *
673137 GAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAGTCTGATATACCTAAAATTTGGAG
261 GAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAATCTAATATACCTAAAATTCGGAG
* * * *
673202 AGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCGCTTAGCTTTAATTCTT
326 AGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACCTAGCTTTAATTCTT
* *
673267 CAAGAATAGTGGAGGTAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGA
391 CAAGAATAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGTGA
*
673332 AGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAGTCTGATAT
456 AGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAATCTGATAT
** *
673397 ATCTAAAATTTGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCAC
521 ATCTAAAATACGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCAC
* * * *
673462 TTAGCTTTAATTCTTCAAGAATAGTGGAGGTAGATAACCCGTCTCCTATCTTGCTTAATTTTGGA
586 TTAGCTTTAATTCTTCAAGAATAATGGAGGTAGATAACCCCTCTCCAATCTTGCTTAATATTGGA
** * *
673527 CACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCTATCGGAACAGTTTCCAGCTG
651 CACGAGGAAAC-TGAAAATTTTCAAGAGATGAACATATTCCTGCTATCGGAACAGTTTCCAGCTG
673592 CCA
715 CCA
*
673595 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCT
1 CTATCTTGCTTAATTTTGAACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCC-TCT
* *
673660 -ATCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCT-T
65 AATCGGAACAATTTCCAACTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGG-AAATCTCT
* *
673723 TCCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGA
129 TCCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAACTTTAATTCTTCAAGAATAGTGGA
*
673788 GGTAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTTAAGAG
194 GGTAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAG
* * * *
673853 ATGTATATCTTCCTCTTATCGGAACAGTTT-CAAGTTCGTGGCAATCTAATATATCTAAAATTCG
259 ATGAACATCTTCCTCTTATCGGAACAATTTCCAA-TTCGTGGCAATCTAATATACCTAAAATTCG
*
673917 GAGAGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGCACAACCACCTAGCTTTAATT
323 GAGAGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACCTAGCTTTAATT
* * *
673982 CTTCAAGACTAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACATGAGGAAATG
388 CTTCAAGAATAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACG
* * * * *
674047 TGAAGCTTTTCAAGAGATGGACATCTTCCTCTTATCGTAATAG-TTTCTAGTTTGTGGCAATCTG
453 TGAAGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTC-AATTCGTGGCAATCTG
* * * *
674111 ATATATCTAAAATACGGAGAGAGGAAAATTCTTCCAAATCTGGAATGAAACTTAATTTGGCACAA
517 ATATATCTAAAATACGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAA
*
674176 TCACTTAGCTTTAATTCTTCAAGACA-AATGGAGGTAGATAACCCCTCTCCAATCTTGCTTAATC
582 CCACTTAGCTTTAATTCTTCAAGA-ATAATGGAGGTAGATAACCCCTCTCCAATCTTGCTTAAT-
* * *
674240 CATT-G-CACTTA-GAAA-TGCAAAATTCTTTAAGAGATGAACATATTCCTGCTATTGGAACA
645 -ATTGGACAC-GAGGAAACTG-AAAATT-TTCAAGAGATGAACATATTCCTGCTATCGGAACA
674299 ATTGCCAATC
Statistics
Matches: 637, Mismatches: 57, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
716 2 0.00
717 11 0.02
718 611 0.96
719 11 0.02
720 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Consensus pattern (717 bp):
CTATCTTGCTTAATTTTGAACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTA
ATCGGAACAATTTCCAACTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAATCTCTTC
CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAACTTTAATTCTTCAAGAATAGTGGAGG
TAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTCAAGAGAT
GAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAATCTAATATACCTAAAATTCGGAG
AGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGAACAACCACCTAGCTTTAATTCTT
CAAGAATAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGTGA
AGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTCGTGGCAATCTGATAT
ATCTAAAATACGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCAC
TTAGCTTTAATTCTTCAAGAATAATGGAGGTAGATAACCCCTCTCCAATCTTGCTTAATATTGGA
CACGAGGAAACTGAAAATTTTCAAGAGATGAACATATTCCTGCTATCGGAACAGTTTCCAGCTGC
CA
Found at i:674476 original size:928 final size:924
Alignment explanation
Indices: 672667--674490 Score: 2329
Period size: 928 Copynumber: 2.0 Consensus size: 924
672657 AACCAGTCTC
*
672667 CTATCTTGCTTAATTTTGGACACGAGAAAATGTAAAGCTTTTCAAGAGATGAACATATTCCTCTT
1 CTATCTTGCTTAATTTTGGACACGAGAAAACGTAAAGCTTTTCAAGAGATGAACATATTCCTCTT
* * * * *
672732 ACCGGAATAGTTTCCAGTTCGTGGCAGTCTGATATATTTAAAATTTGGAGAGAGGAAAATCCTAC
66 ACCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTAC
*
672797 CAAATCTGGAATGGAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGG
131 CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGG
* * *
672862 TAGACAACCCATCTCCTATCTTGCTTAATTTTGAACACGAGGAAACGTGAAGCTTTTCAAGAGAT
196 TAGACAACCCATCTCCAATCTTGCTTAATTTTGAACACAAGGAAACATGAAGCTTTTCAAGAGAT
* * *
672927 GAACATCTTCCTCTAATCGGAACAATTTTCAATTCGTGGCAGTCTGATATATCTAAAATTCGGAG
261 GAACATCTTCCTCTAATCGGAACAAGTTTCAATTCGTGGCAATCTAATATATCTAAAATTCGGAG
* * * * *
672992 AGAGGAAATTTCTTCCAAATCTGGAATGAAACTTAAATTAGCACAACCACTTAACTTTAATTCTT
326 AGAGAAAAATCCTACCAAATCTGGAATGAAACTTAAATTAGCACAACCACCTAACTTTAATTCTT
* *
673057 CAAGAATAGTGGAGGTAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGACACGAGGAAACGTGA
391 CAAGAATAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGTGA
*
673122 AGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAGTCTGATAT
456 AGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAATCTGATAT
** * *
673187 ACCTAAAATTTGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTAAATTAGAACAACCGC
521 ACCTAAAATACGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCAC
* * * * *
673252 TTAGCTTTAATTCTTCAAGAATAGTGGAGGTAGACAGCCCGTCTCCTATCTTGCTTAATTTTGGA
586 TTAGCTTTAATTCTTCAAGAATAATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAATATTGGA
** * * **
673317 CACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAGTTTTCAATTC
651 CACGAGGAAAC-TGAAAATTTTCAAGAGATGAACATATTCCTCTTATCGGAACAATTGCCAATTC
* * * * * *
673382 GTGGCAGTCTGATATATCTAAAATTTGGAGAGAGGAAAATCCTTCCAAATCTGGAATGGAACTTA
715 GTCGCAATCAGATATATCTAAAATTCGAAGAGAGGAAAACCCTTCCAAATCTGGAATGGAAC-TA
* * * * * * * *
673447 AATTAGAACAACCACTTAGCTTTAATTCTTCAAGAATAGTGGAGGTAGATAACCCGTCTCCTATC
779 AATTACAACAACCACTTAGC-TTAACTCCTCAAGAACAGTGGAAGTAGATAACCCATCCCCGATC
** * * * *
673512 TTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCTTCTATCGG
843 TTGCTTAATCGTGAACACGAGCAAACAT-AAGCTTTTCAAGAGATAAACATCTTCCTTCTATCGG
673577 AACAGTTTCCAGCTGCCA
907 AACAGTTTCCAGCTGCCA
* * *
673595 CTATCTTGCTTAATTTTGGACACGAGGAAACGTGAAGCTTTTCAAGAGATGAACATCTTCCT-TC
1 CTATCTTGCTTAATTTTGGACACGAGAAAACGTAAAGCTTTTCAAGAGATGAACATATTCCTCT-
* * *
673659 TATCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCTTT
65 TACCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTA
673724 CCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAG
130 CCAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAG
* * *
673789 GTAGACAACCCGTCTCCAATCTTGCTTAATTTTGGACACAAGGAAACATGAAGCTTTTTAAGAGA
195 GTAGACAACCCATCTCCAATCTTGCTTAATTTTGAACACAAGGAAACATGAAGCTTTTCAAGAGA
* * *
673854 TGTATATCTTCCTCTTATCGGAAC-AGTTTCAAGTTCGTGGCAATCTAATATATCTAAAATTCGG
260 TGAACATCTTCCTCTAATCGGAACAAGTTTCAA-TTCGTGGCAATCTAATATATCTAAAATTCGG
* *
673918 AGAGAGAAAAATCCTACCAAATCTGGAATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTC
324 AGAGAGAAAAATCCTACCAAATCTGGAATGAAACTTAAATTAGCACAACCACCTAACTTTAATTC
* * *
673983 TTCAAGACTAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACATGAGGAAATGT
389 TTCAAGAATAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGT
* * * * * * *
674048 GAAGCTTTTCAAGAGATGGACATCTTCCTCTTATCGTAATAGTTTCTAGTTTGTGGCAATCTGAT
454 GAAGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAATCTGAT
* * * * * *
674113 ATATCTAAAATACGGAGAGAGGAAAATTCTTCCAAATCTGGAATGAAACTTAATTTGGCACAATC
519 ATACCTAAAATACGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACC
*
674178 ACTTAGCTTTAATTCTTCAAGACA-AATGGAGGTAGATAACCCCTCTCCAATCTTGCTTAATCCA
584 ACTTAGCTTTAATTCTTCAAGA-ATAATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAAT--A
* * *
674242 TT-G-CACTTA-GAAA-TGCAAAATTCTTTAAGAGATGAACATATTCCTGC-TATTGGAACAATT
646 TTGGACAC-GAGGAAACTG-AAAATT-TTCAAGAGATGAACATATTCCT-CTTATCGGAACAATT
* * * *
674302 GCCAA-TCTTCCGCAATCAGA-A-A-CATAAACACTTCGAAGAGCGGAAAACCCATT-TAAATTT
707 GCCAATTCGT-CGCAATCAGATATATC-TAAA-A-TTCGAAGAGAGGAAAACCC-TTCCAAATCT
* * *
674362 GGAATTGAGAAC-AAATCT-CCAC-ACTTCACTATAG-TTAGCTCCTCAAGAACCGTGGAAGTAG
767 GGAA-TG-GAACTAAAT-TACAACAAC--CACT-TAGCTTAACTCCTCAAGAACAGTGGAAGTAG
* ** ** *
674423 CTAGTCCATCCCCGATAC-TGCTTAATCGTGAACAATC-CTCAATACAT-AGCTTTTTAAGAGAT
826 ATAACCCATCCCCGAT-CTTGCTTAATCGTGAAC-A-CGAGCAA-ACATAAGCTTTTCAAGAGAT
674485 AAACAT
887 AAACAT
674491 TGTCCCGTCA
Statistics
Matches: 769, Mismatches: 103, Indels: 48
0.84 0.11 0.05
Matches are distributed among these distances:
925 1 0.00
926 7 0.01
927 19 0.02
928 712 0.93
929 17 0.02
930 13 0.02
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (924 bp):
CTATCTTGCTTAATTTTGGACACGAGAAAACGTAAAGCTTTTCAAGAGATGAACATATTCCTCTT
ACCGGAACAGTTTCCAGCTCGTGGCAGTCTAATATATCTAAAATTCGGAGAGAGGAAAATCCTAC
CAAATCTGGAATGAAACTTAAATTAGAACAACCACTTAGCTTTAATTCTTCAAGACTAGTGGAGG
TAGACAACCCATCTCCAATCTTGCTTAATTTTGAACACAAGGAAACATGAAGCTTTTCAAGAGAT
GAACATCTTCCTCTAATCGGAACAAGTTTCAATTCGTGGCAATCTAATATATCTAAAATTCGGAG
AGAGAAAAATCCTACCAAATCTGGAATGAAACTTAAATTAGCACAACCACCTAACTTTAATTCTT
CAAGAATAGTGGAGGTAGACAGCCAGTCTCCGATCTTGCTTAATTTTGGACACGAGGAAACGTGA
AGCTTTTCAAGAGATGAACATCTTCCTCTTATCGGAACAATTTCCAATTCGTGGCAATCTGATAT
ACCTAAAATACGGAGAGAGGAAAATCCTTCCAAATCTGGAATGAAACTTAAATTAGAACAACCAC
TTAGCTTTAATTCTTCAAGAATAATGGAGGTAGACAACCCCTCTCCAATCTTGCTTAATATTGGA
CACGAGGAAACTGAAAATTTTCAAGAGATGAACATATTCCTCTTATCGGAACAATTGCCAATTCG
TCGCAATCAGATATATCTAAAATTCGAAGAGAGGAAAACCCTTCCAAATCTGGAATGGAACTAAA
TTACAACAACCACTTAGCTTAACTCCTCAAGAACAGTGGAAGTAGATAACCCATCCCCGATCTTG
CTTAATCGTGAACACGAGCAAACATAAGCTTTTCAAGAGATAAACATCTTCCTTCTATCGGAACA
GTTTCCAGCTGCCA
Found at i:674928 original size:17 final size:17
Alignment explanation
Indices: 674906--674939 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
674896 ATCCACTAAT
*
674906 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
674923 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
674940 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:679566 original size:17 final size:17
Alignment explanation
Indices: 679544--679577 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
679534 ATCCACTAAT
*
679544 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
679561 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
679578 ACTTTCCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:682432 original size:20 final size:20
Alignment explanation
Indices: 682407--682456 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
682397 TGGCTTAAAA
682407 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
682427 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
682444 GTGGTAGTGGATT
1 TTGGTAGTGGATT
682457 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:687070 original size:20 final size:20
Alignment explanation
Indices: 687045--687094 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
687035 TGGCTTAAAA
687045 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
687065 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
687082 GTGGTAGTGGATT
1 TTGGTAGTGGATT
687095 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:707225 original size:18 final size:18
Alignment explanation
Indices: 707177--707253 Score: 59
Period size: 18 Copynumber: 4.2 Consensus size: 18
707167 TTGGAAAAAA
*
707177 TAATATTTTTATAA-TTT
1 TAATTTTTTTATAATTTT
* * *
707194 AACATTGTTATATAATTTT
1 TA-ATTTTTTTATAATTTT
*
707213 TAATTTTTTTATATTTTT
1 TAATTTTTTTATAATTTT
707231 GTAA-TTTTTTATAGATATTT
1 -TAATTTTTTTATA-AT-TTT
707251 TAA
1 TAA
707254 AATGTTGAAG
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
17 1 0.02
18 31 0.67
19 11 0.24
20 3 0.07
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (18 bp):
TAATTTTTTTATAATTTT
Found at i:711997 original size:210 final size:210
Alignment explanation
Indices: 709687--711934 Score: 3435
Period size: 210 Copynumber: 10.7 Consensus size: 210
709677 ATTCGAACAA
* * * * * *
709687 TTTCCAGATT-GTTGCAGTTTGATATATTTAAAATAT-GAAGAG-GGCAAAATCCTTCTAAATCT
1 TTTCCAG-TTCGTGGCAGTCTGATATATCTAAAAT-TCGGAGAGAGG-AAAATCCTACCAAATCT
* * * ***** * * *
709749 GGAATGGAATTTAAGTTACCACAATGGGATAGCTTTAATTCTGCAAGATTAGGGGAGGTAGACAA
63 GGAATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAA
* * * * *
709814 CCTGTCTCCTATCTCGCTTAATTTTGGACATGAGGAAATCTGAAACTTTTTAAGAGATGAACATC
128 CCAGTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATC
709879 TTCCTCTTATCGGAATAG
193 TTCCTCTTATCGGAATAG
*
709897 TTTCCAGTTTGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
* * * *
709962 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTGCAAGATTAGTGGAGGTAGACAGCCC
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
*
710027 GTCTCCTATCTCGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
710092 CTCTTATCGGAATAG
196 CTCTTATCGGAATAG
*
710107 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCCACCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
* * * *
710172 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTGCAAGATTAGTGGAGGTAGACAGCCC
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
*
710237 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAATAGATGAACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
710302 CTCTTATCGGAATAG
196 CTCTTATCGGAATAG
*
710317 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCCACCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
* *
710382 ATGGAACTTAAATTAGCACAACCATCTAGTTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
* **
710447 GTCTCCTATCTCGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACGGCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
710512 CTCTTATCGGAATAG
196 CTCTTATCGGAATAG
** * * *
710527 TTTCCAGTTCGTGAAAGTTTGATATATCTAAAATTCGGAGAGAGGAAATTCCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
710592 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
* *
710657 GTCTCCTATCTCGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACGTCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
710722 CTCTTATCGGAATAG
196 CTCTTATCGGAATAG
* * * * * *
710737 TTTCCAATTTGTGGAAGTTTGATATATCTAAAATTCGGAGAGAGGAAATTCCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
* *
710802 ATGGAACTTAAATTAGCACAACCACCCAGCTTTAATT-TTTAAGACTAGTGGAGGTAGACAACCA
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
*
710866 GTCTCCTATCTCGCTTAATTTTGGACATGAGGAAATGTGAAGC-TTTCTAAGAGATGAACATCTT
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTC-AAGAGATGAACATCTT
*
710930 CCTTTTATCGGAATAG
195 CCTCTTATCGGAATAG
* *
710946 TTTCCAGTTTGTGGCACTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
711011 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
*
711076 GTCTCCTATCCTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
* *
711141 CTCTTACCGGAATAA
196 CTCTTATCGGAATAG
* ** *
711156 TTTTCAGTTCGTGGCAGTCTGATATATGAAAAATTCGGAGAGAGGAAAATCCAACCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
* *
711221 ATGGAACTTAAATTAACACAACCACCTAGCTTTAATTCTTCAAGACTGGTGGAGGTAGACAACCA
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
711286 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
* *
711351 CTCTTATCAGAAAAG
196 CTCTTATCGGAATAG
* *
711366 TTTCCAGTTCGTGGCAGTCTGATACATCTAAAATTCGGAGAGAGAAAAATCCTACCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
711431 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
* * *
711496 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTTAAGAGATGGACACCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
*
711561 CTCTTATCGAAATAG
196 CTCTTATCGGAATAG
* * * * *
711576 TTTCCAGTTCGTGGCAGTCTGATATATCAAAAATTCGCAGAGAGGACAATTCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
* ** * *
711641 ATGGAACTTAAATTAGCACAATCATTTAGCTTTAAGTCTTCAAGACTAGTGGAGGTAGACAACCC
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
* * * * * * *
711706 GTCTCCAATCTTGCTTAATTTAGGACACGAGGAAATGAGAATCTTTTTAAGAGATGGACATCTTC
131 GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
* *
711771 CTCTTATCGGAACAA
196 CTCTTATCGGAATAG
* * * * * *
711786 TTTTCAATTCGCGGCAGTTTGATATATCTAAAATTCGGAGAGAGGAAAATTCTTCCAAATCTGGA
1 TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
* * * * * * *
711851 ATGGAACTTAATTTAGCACAATCACTTAGCTTTAATTCTTCAAGACAAATGGAGGTTGACAACCC
66 ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
* *
711916 CTCTCCAATCTTGCTTAAT
131 GTCTCCTATCTTGCTTAAT
711935 CCATTGCACT
Statistics
Matches: 1907, Mismatches: 125, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
208 4 0.00
209 197 0.10
210 1700 0.89
211 6 0.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (210 bp):
TTTCCAGTTCGTGGCAGTCTGATATATCTAAAATTCGGAGAGAGGAAAATCCTACCAAATCTGGA
ATGGAACTTAAATTAGCACAACCACCTAGCTTTAATTCTTCAAGACTAGTGGAGGTAGACAACCA
GTCTCCTATCTTGCTTAATTTTGGACATGAGGAAATGTGAAGCTTTTCAAGAGATGAACATCTTC
CTCTTATCGGAATAG
Found at i:716916 original size:13 final size:13
Alignment explanation
Indices: 716898--716924 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
716888 AAAGAATCAT
716898 AAAAATTTTCAAA
1 AAAAATTTTCAAA
716911 AAAAATTTTCAAA
1 AAAAATTTTCAAA
716924 A
1 A
716925 TTGATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAAATTTTCAAA
Found at i:717413 original size:5 final size:5
Alignment explanation
Indices: 717403--717435 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
717393 TATTCATCTT
717403 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCT
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCT
717436 ATTTTCTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CCTCC
Found at i:724673 original size:5 final size:5
Alignment explanation
Indices: 724665--724693 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
724655 TTTGTATTGT
724665 ATGTC ATGTC ATGTC ATGTC ATGTC ATGT
1 ATGTC ATGTC ATGTC ATGTC ATGTC ATGT
724694 AGATCTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (5 bp):
ATGTC
Found at i:732169 original size:32 final size:31
Alignment explanation
Indices: 732108--732171 Score: 76
Period size: 34 Copynumber: 2.0 Consensus size: 31
732098 ACTCGTCCCG
732108 AAAAAACAAAACTATACCAACTCAGTCCAGTCC
1 AAAAAACAAAACTATACCAACT-A-TCCAGTCC
*
732141 AAAAAATCAAAGCTATACTCAACT-TCCAGTC
1 AAAAAA-CAAAACTATAC-CAACTATCCAGTC
732172 ATCTCTAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 7 0.25
33 6 0.21
34 10 0.36
35 5 0.18
ACGTcount: A:0.47, C:0.28, G:0.06, T:0.19
Consensus pattern (31 bp):
AAAAAACAAAACTATACCAACTATCCAGTCC
Found at i:744250 original size:59 final size:57
Alignment explanation
Indices: 744128--744251 Score: 142
Period size: 58 Copynumber: 2.2 Consensus size: 57
744118 CCCTCGTGAT
* * *
744128 AAAAAAAATTAAGTGCCAAATTAGGAAAAAGAGTCAAGTTTGGGTACTAAATTAGAC
1 AAAAAAAATTAAGTACCAAATTAGAAAAAAGAGTCAAGTTTGGATACTAAATTAGAC
** ** * *
744185 CCAAAAAATATAAGTACCACTTTAAGAAAAAAGTGTCAAGTTT-GATACTAAATTGGAC
1 AAAAAAAAT-TAAGTACCAAATT-AGAAAAAAGAGTCAAGTTTGGATACTAAATTAGAC
744243 AAAAAAAAT
1 AAAAAAAAT
744252 CAAATTAAGA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
57 7 0.13
58 30 0.56
59 17 0.31
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (57 bp):
AAAAAAAATTAAGTACCAAATTAGAAAAAAGAGTCAAGTTTGGATACTAAATTAGAC
Found at i:748250 original size:59 final size:55
Alignment explanation
Indices: 748143--748309 Score: 156
Period size: 59 Copynumber: 2.9 Consensus size: 55
748133 CTCGTGATAA
* * * *
748143 AAAAAAGATTAAGTGCCAAATTAAGAAAAAGAGTAAAGTTTGGGTACTAAATTAGACCC
1 AAAAAA-A-TAAGTACCAAATTAAGAAAAAGTGTAAAGTTTAGATACTAAATTAGA--C
* * *
748202 AAAAAATATAAGTACCAATTTAAGAAAAAAGTGTCAAGTTTAGATACTAAATTGGAC
1 AAAAAA-ATAAGTACCAAATTAAG-AAAAAGTGTAAAGTTTAGATACTAAATTAGAC
* * * *
748259 AATAAAAAAAAGATATCAAATTAAGAAAAA-TGTGAAGTTTAGATACCAAAT
1 AA-AAAAATAAG-TACCAAATTAAGAAAAAGTGTAAAGTTTAGATACTAAAT
748310 ATTATATTAT
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
56 19 0.21
57 12 0.13
58 28 0.30
59 33 0.36
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.24
Consensus pattern (55 bp):
AAAAAAATAAGTACCAAATTAAGAAAAAGTGTAAAGTTTAGATACTAAATTAGAC
Found at i:748286 original size:58 final size:57
Alignment explanation
Indices: 748153--748309 Score: 158
Period size: 58 Copynumber: 2.7 Consensus size: 57
748143 AAAAAAGATT
* * * * *
748153 AAGTGCCAAATTAAGAAAAAGAGTAAAGTTTGGGTACTAAATTAGACCCAAAAAATAT
1 AAGTACCAAATTAAGAAAAAGTGTAAAGTTTAGATACTAAATTAGA-CCAAAAAATAA
* * *
748211 AAGTACCAATTTAAGAAAAAAGTGTCAAGTTTAGATACTAAATTGGA-CAATAAAA-AA
1 AAGTACCAAATTAAG-AAAAAGTGTAAAGTTTAGATACTAAATTAGACCAA-AAAATAA
* * *
748268 AAGATATCAAATTAAGAAAAA-TGTGAAGTTTAGATACCAAAT
1 AAG-TACCAAATTAAGAAAAAGTGTAAAGTTTAGATACTAAAT
748310 ATTATATTAT
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
56 19 0.23
57 12 0.14
58 27 0.32
59 26 0.31
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (57 bp):
AAGTACCAAATTAAGAAAAAGTGTAAAGTTTAGATACTAAATTAGACCAAAAAATAA
Found at i:758605 original size:15 final size:15
Alignment explanation
Indices: 758585--758615 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
758575 TGATTTTCCT
758585 TTTAACATCATATAA
1 TTTAACATCATATAA
*
758600 TTTAACATTATATAA
1 TTTAACATCATATAA
758615 T
1 T
758616 AGCCTCAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAACATCATATAA
Found at i:763158 original size:12 final size:12
Alignment explanation
Indices: 763141--763166 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
763131 GCAACTCATC
763141 TTATTCAAGGAA
1 TTATTCAAGGAA
763153 TTATTCAAGGAA
1 TTATTCAAGGAA
763165 TT
1 TT
763167 TGCACTGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (12 bp):
TTATTCAAGGAA
Found at i:766070 original size:46 final size:46
Alignment explanation
Indices: 765981--766077 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 46
765971 AAAATTAATA
** ****
765981 AAGAAGTTGTCTATTTAAATATGAGAAATTAAACTGGTTCAATTCT
1 AAGAAGTTGTCTACCTAAATATGAGAAATTAAACTCACCCAATTCT
766027 AAGAAGTTGTCTACCTAAATATGAGAAATTAAACTCACCCAATTCT
1 AAGAAGTTGTCTACCTAAATATGAGAAATTAAACTCACCCAATTCT
766073 AAGAA
1 AAGAA
766078 TTGATGAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (46 bp):
AAGAAGTTGTCTACCTAAATATGAGAAATTAAACTCACCCAATTCT
Found at i:766111 original size:56 final size:58
Alignment explanation
Indices: 766027--766174 Score: 196
Period size: 55 Copynumber: 2.6 Consensus size: 58
766017 GTTCAATTCT
*
766027 AAGAAGTTGTCTACCTAAATATGAGAAATTAAACT-CACCCAATTCTAAGAATTGATG
1 AAGAAGTTGTCTACTTAAATATGAGAAATTAAACTGCACCCAATTCTAAGAATTGATG
* ** ***
766084 AAGAAGTTGTC-ACTTATATATGAGAAA-TAAA-TGGGCTTGATTCTAAGAATTGATG
1 AAGAAGTTGTCTACTTAAATATGAGAAATTAAACTGCACCCAATTCTAAGAATTGATG
*
766139 AAGAAGTTGTCTATTTAAATATGAGAAATTAAACTG
1 AAGAAGTTGTCTACTTAAATATGAGAAATTAAACTG
766175 ATAAGATTAT
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
54 1 0.01
55 32 0.41
56 28 0.36
57 15 0.19
58 2 0.03
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (58 bp):
AAGAAGTTGTCTACTTAAATATGAGAAATTAAACTGCACCCAATTCTAAGAATTGATG
Found at i:766279 original size:29 final size:29
Alignment explanation
Indices: 766246--766304 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
766236 ATGTAAATCG
766246 CTTAATTGTATATATGCTTCGATCTCATC
1 CTTAATTGTATATATGCTTCGATCTCATC
*
766275 CTTAATTGTATATATGCTTCGATTTCATC
1 CTTAATTGTATATATGCTTCGATCTCATC
766304 C
1 C
766305 ATCGATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (29 bp):
CTTAATTGTATATATGCTTCGATCTCATC
Found at i:766414 original size:29 final size:29
Alignment explanation
Indices: 766362--766535 Score: 119
Period size: 29 Copynumber: 6.0 Consensus size: 29
766352 ATGTAAATCG
*
766362 CTTAATTGTATATATATGCTTCGATCTCATC
1 CTTAATTG--TATATATGCTTCGATTTCATC
766393 CTTAATTGTATATATGCTTCGATTTCATC
1 CTTAATTGTATATATGCTTCGATTTCATC
** * ** * *
766422 CATCGA-TGTA-ATATGATAAGATTTGATT
1 C-TTAATTGTATATATGCTTCGATTTCATC
* * * **
766450 TTGTAATT-TA-AGA-GATT--ATGTAAATC
1 CT-TAATTGTATATATGCTTCGAT-TTCATC
*
766476 GCTTAATTGTATATATGCTTCGATCTCATC
1 -CTTAATTGTATATATGCTTCGATTTCATC
766506 CTTAATTGTATATATGCTTCGATTTCATC
1 CTTAATTGTATATATGCTTCGATTTCATC
766535 C
1 C
766536 ATCGATTTAA
Statistics
Matches: 110, Mismatches: 23, Indels: 22
0.71 0.15 0.14
Matches are distributed among these distances:
25 2 0.02
26 8 0.07
27 7 0.06
28 20 0.18
29 58 0.53
30 5 0.05
31 10 0.09
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (29 bp):
CTTAATTGTATATATGCTTCGATTTCATC
Found at i:766424 original size:118 final size:116
Alignment explanation
Indices: 766213--766567 Score: 619
Period size: 113 Copynumber: 3.1 Consensus size: 116
766203 ATGATAAGAT
766213 TTGATTTTGTAATTTAAGAGATTATGTAAATCGCTTAATTGTATATATGCTTCGATCTCATCCTT
1 TTGATTTTGTAATTTAAGAGATTATGTAAATCGCTTAATTGTATATATGCTTCGATCTCATCCTT
766278 AATTGTATATATGCTTCGATTTCATCCATCGATTTAATTCAATCTATATCG
66 AATTGTATATATGCTTCGATTTCATCCATCGATTTAATTCAATCTATATCG
766329 TTGATTTTGTAATTTAAGAGATTATGTAAATCGCTTAATTGTATATATATGCTTCGATCTCATCC
1 TTGATTTTGTAATTTAAGAGATTATGTAAATCGCTTAATTG--TATATATGCTTCGATCTCATCC
* * * *
766394 TTAATTGTATATATGCTTCGATTTCATCCATCGATGTAATAT-GAT-AAGAT--
64 TTAATTGTATATATGCTTCGATTTCATCCATCGATTTAAT-TCAATCTATATCG
766444 TTGATTTTGTAATTTAAGAGATTATGTAAATCGCTTAATTGTATATATGCTTCGATCTCATCCTT
1 TTGATTTTGTAATTTAAGAGATTATGTAAATCGCTTAATTGTATATATGCTTCGATCTCATCCTT
766509 AATTGTATATATGCTTCGATTTCATCCATCGATTTAATTCAATCTATATCG
66 AATTGTATATATGCTTCGATTTCATCCATCGATTTAATTCAATCTATATCG
766560 TTGATTTT
1 TTGATTTT
766568 AGGAAGTTCA
Statistics
Matches: 224, Mismatches: 8, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
112 1 0.00
113 63 0.28
114 3 0.01
115 41 0.18
116 49 0.22
117 3 0.01
118 63 0.28
119 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.45
Consensus pattern (116 bp):
TTGATTTTGTAATTTAAGAGATTATGTAAATCGCTTAATTGTATATATGCTTCGATCTCATCCTT
AATTGTATATATGCTTCGATTTCATCCATCGATTTAATTCAATCTATATCG
Found at i:774968 original size:74 final size:75
Alignment explanation
Indices: 774887--775037 Score: 286
Period size: 74 Copynumber: 2.0 Consensus size: 75
774877 GGAATTTTTA
774887 TTTTGAAAACTTTGGTCAAAACCTTACTAGTTCAAACAGTTGTTTTAGG-TCTGTAAACTGATTC
1 TTTTGAAAACTTTGGTCAAAACCTTACTAGTTCAAACAGTTGTTTTAGGTTCTGTAAACTGATTC
*
774951 GTTTTTCGAT
66 GTTGTTCGAT
774961 TTTTGAAAACTTTGGTCAAAACCTTACTAGTTCAAACAGTTGTTTTAGGTTCTGTAAACTGATTC
1 TTTTGAAAACTTTGGTCAAAACCTTACTAGTTCAAACAGTTGTTTTAGGTTCTGTAAACTGATTC
775026 GTTGTTCGAT
66 GTTGTTCGAT
775036 TT
1 TT
775038 GTATCCGAAA
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
74 49 0.65
75 26 0.35
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (75 bp):
TTTTGAAAACTTTGGTCAAAACCTTACTAGTTCAAACAGTTGTTTTAGGTTCTGTAAACTGATTC
GTTGTTCGAT
Found at i:784214 original size:35 final size:35
Alignment explanation
Indices: 784173--784252 Score: 144
Period size: 35 Copynumber: 2.3 Consensus size: 35
784163 TAAGTTTTAA
784173 CCATAACATAAAATAGTACCAAGAAACCCCTCCAG
1 CCATAACATAAAATAGTACCAAGAAACCCCTCCAG
784208 CCATAACATAAAATAGTACCAAGAAACCCCTCCAG
1 CCATAACATAAAATAGTACCAAGAAACCCCTCCAG
*
784243 TC-TAACATAA
1 CCATAACATAA
784253 CATCGACAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 8 0.18
35 36 0.82
ACGTcount: A:0.46, C:0.30, G:0.07, T:0.16
Consensus pattern (35 bp):
CCATAACATAAAATAGTACCAAGAAACCCCTCCAG
Found at i:791189 original size:50 final size:50
Alignment explanation
Indices: 791130--791230 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
791120 CAAATACGAG
*
791130 TATGTTTGATTAAAAGTAAATATTGTATATTATCGATTTATGATTTTATA
1 TATGTTTGATTAAAAGTAAATATTGTATATTATAGATTTATGATTTTATA
791180 TATGTTTGATTAAAAGTAAATATTGTATATTATAGATTTATGATTTTATA
1 TATGTTTGATTAAAAGTAAATATTGTATATTATAGATTTATGATTTTATA
791230 T
1 T
791231 TTTACAGCAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.37, C:0.01, G:0.12, T:0.50
Consensus pattern (50 bp):
TATGTTTGATTAAAAGTAAATATTGTATATTATAGATTTATGATTTTATA
Found at i:802468 original size:17 final size:17
Alignment explanation
Indices: 802448--802508 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
802438 ATTTCAAGAC
802448 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* ***
802465 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
802484 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
802502 TTATGTA
1 TTATGTA
802509 GTGATTCAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 16 0.48
18 4 0.12
19 4 0.12
20 9 0.27
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:802484 original size:37 final size:37
Alignment explanation
Indices: 802443--802517 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
802433 TGTTAATTTC
802443 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
802480 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
802517 A
1 A
802518 TTTGGTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.45
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:802534 original size:9 final size:9
Alignment explanation
Indices: 802522--802618 Score: 58
Period size: 9 Copynumber: 10.8 Consensus size: 9
802512 ATTCAATTTG
802522 GTTAATTCA
1 GTTAATTCA
**
802531 GTTAATTTG
1 GTTAATTCA
802540 GTTAATTCGA
1 GTTAATTC-A
*
802550 G-TAATTCG
1 GTTAATTCA
*
802558 GTTAATT-T
1 GTTAATTCA
802566 GATTAATTC-
1 G-TTAATTCA
**
802575 GATTAATTTG
1 G-TTAATTCA
*
802585 GGTAATT-A
1 GTTAATTCA
802593 GTGTAATTCA
1 GT-TAATTCA
*
802603 GTTAATTCG
1 GTTAATTCA
802612 GTTAATT
1 GTTAATT
802619 TTTAACCAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 14
0.74 0.12 0.15
Matches are distributed among these distances:
8 3 0.04
9 62 0.89
10 5 0.07
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (9 bp):
GTTAATTCA
Found at i:802539 original size:18 final size:18
Alignment explanation
Indices: 802516--802618 Score: 86
Period size: 18 Copynumber: 5.7 Consensus size: 18
802506 GTAGTGATTC
*
802516 AATTTGGTTAATTCAGTT
1 AATTCGGTTAATTCAGTT
*
802534 AATTTGGTTAATTCGAG-T
1 AATTCGGTTAATTC-AGTT
*
802552 AATTCGGTTAATT-TGATT
1 AATTCGGTTAATTCAG-TT
* ** *
802570 AATTCGATTAATTTGGGT
1 AATTCGGTTAATTCAGTT
*
802588 AATT-AGTGTAATTCAGTT
1 AATTCGGT-TAATTCAGTT
802606 AATTCGGTTAATT
1 AATTCGGTTAATT
802619 TTTAACCAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
16 1 0.01
17 1 0.01
18 61 0.90
19 5 0.07
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (18 bp):
AATTCGGTTAATTCAGTT
Found at i:802554 original size:27 final size:27
Alignment explanation
Indices: 802524--802582 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
802514 TCAATTTGGT
*
802524 TAATTCAGTTAATTTGGTTAATTCGAG
1 TAATTCAGTTAATTTGATTAATTCGAG
* *
802551 TAATTCGGTTAATTTGATTAATTCGAT
1 TAATTCAGTTAATTTGATTAATTCGAG
802578 TAATT
1 TAATT
802583 TGGGTAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (27 bp):
TAATTCAGTTAATTTGATTAATTCGAG
Found at i:802590 original size:27 final size:27
Alignment explanation
Indices: 802524--802619 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
802514 TCAATTTGGT
* * *
802524 TAATTCAGTTAATTTGGTTAATTCGAG
1 TAATTCGGGTAATTTGATTAATTCGAG
* *
802551 TAATTCGGTTAATTTGATTAATTCGAT
1 TAATTCGGGTAATTTGATTAATTCGAG
* *
802578 TAATTTGGGTAATTAG-TGTAATTC-AG
1 TAATTCGGGTAATTTGAT-TAATTCGAG
*
802604 TTAATTCGGTTAATTT
1 -TAATTCGGGTAATTT
802620 TTAACCAAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.04
27 55 0.96
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (27 bp):
TAATTCGGGTAATTTGATTAATTCGAG
Found at i:803573 original size:4 final size:4
Alignment explanation
Indices: 803564--803639 Score: 152
Period size: 4 Copynumber: 19.0 Consensus size: 4
803554 CGAATACTCA
803564 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
803612 ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC
803640 CATTAAGTCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 72 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:805348 original size:31 final size:30
Alignment explanation
Indices: 805305--805383 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
805295 AGACTGTCCT
* **
805305 AGTGACTAAAATGAAAACAAATAGTAAGAGG
1 AGTGTCTAAAATGAAAACAAA-AACAAGAGG
***
805336 AGTGTCTAAAATGATAAA-AAAAACAATTTG
1 AGTGTCTAAAATGA-AAACAAAAACAAGAGG
805366 AGTGTCTAAAATGAAAAC
1 AGTGTCTAAAATGAAAAC
805384 TTATAAGTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 3 0.08
30 18 0.45
31 16 0.40
32 3 0.08
ACGTcount: A:0.53, C:0.08, G:0.18, T:0.22
Consensus pattern (30 bp):
AGTGTCTAAAATGAAAACAAAAACAAGAGG
Found at i:805693 original size:26 final size:25
Alignment explanation
Indices: 805664--805734 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
805654 CAAATAATTT
805664 AAATTAAAATATTCAAAAAATAAACA
1 AAATTAAAATATTCAAAAAATAAA-A
** *
805690 AAATTTCTAAT-TTCAAAAAATATAA
1 AAA-TTAAAATATTCAAAAAATAAAA
805715 AAATATAAAA-ATTCAAAAAA
1 AAAT-TAAAATATTCAAAAAA
805735 GTTAACATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
24 1 0.03
25 16 0.43
26 15 0.41
27 5 0.14
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (25 bp):
AAATTAAAATATTCAAAAAATAAAA
Found at i:820302 original size:16 final size:15
Alignment explanation
Indices: 820281--820320 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
820271 CCCCAAAATA
*
820281 TTTTCTTTTTCTTTTT
1 TTTTCTTTTT-TTTAT
820297 TTTTCTTTTTTTTAT
1 TTTTCTTTTTTTTAT
*
820312 TTTTATTTT
1 TTTTCTTTT
820321 GATTTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.05, C:0.07, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTCTTTTTTTTAT
Found at i:823287 original size:21 final size:21
Alignment explanation
Indices: 823261--823301 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
823251 ATCTGCTCAA
* *
823261 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
823282 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
823302 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:829169 original size:16 final size:16
Alignment explanation
Indices: 829148--829182 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
829138 GTGTCAATGC
829148 AAGAAAACGTGAATTT
1 AAGAAAACGTGAATTT
829164 AAGAAAACGTGAATTT
1 AAGAAAACGTGAATTT
829180 AAG
1 AAG
829183 TGCGTTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.06, G:0.20, T:0.23
Consensus pattern (16 bp):
AAGAAAACGTGAATTT
Found at i:832252 original size:21 final size:21
Alignment explanation
Indices: 832228--832269 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
832218 GTAGGAACAT
*
832228 TTTCTGAAAATTTTGCATTGA
1 TTTCTGAAAACTTTGCATTGA
832249 TTTCTGAAAACTTTGCATTGA
1 TTTCTGAAAACTTTGCATTGA
832270 AATAATCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (21 bp):
TTTCTGAAAACTTTGCATTGA
Found at i:833084 original size:9 final size:9
Alignment explanation
Indices: 833070--833107 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
833060 TTTTAGGGAC
833070 TAAATTGAA
1 TAAATTGAA
833079 TAAATTGAA
1 TAAATTGAA
* *
833088 AAAATTTAA
1 TAAATTGAA
833097 T-AATTGAA
1 TAAATTGAA
833105 TAA
1 TAA
833108 TTTATTATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (9 bp):
TAAATTGAA
Found at i:836487 original size:56 final size:57
Alignment explanation
Indices: 836407--836521 Score: 214
Period size: 56 Copynumber: 2.0 Consensus size: 57
836397 TTAAGAACCA
*
836407 TGCACCATATTTCAAGCCCCTCATCTCAATCACT-ACAGCTCTCCACTCTATAAGAG
1 TGCACCATATTTCAAGCCCCTCATCTCAATCACTAACAACTCTCCACTCTATAAGAG
836463 TGCACCATATTTCAAGCCCCTCATCTCAATCACTAACAACTCTCCACTCTATAAGAG
1 TGCACCATATTTCAAGCCCCTCATCTCAATCACTAACAACTCTCCACTCTATAAGAG
836520 TG
1 TG
836522 AACCGCTCCA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 34 0.60
57 23 0.40
ACGTcount: A:0.30, C:0.35, G:0.09, T:0.27
Consensus pattern (57 bp):
TGCACCATATTTCAAGCCCCTCATCTCAATCACTAACAACTCTCCACTCTATAAGAG
Found at i:836545 original size:57 final size:55
Alignment explanation
Indices: 836423--836545 Score: 131
Period size: 57 Copynumber: 2.2 Consensus size: 55
836413 ATATTTCAAG
* * * * * *
836423 CCCCTCATCTCAATCACTACAGCTCTCCACTCTATAAGAGTGCACCATATTTCAAG
1 CCCCCCATCTCAATCACTACAACTCTCCACTCTATAAGAGTGAACCA-ACTCCAAA
* *
836479 CCCCTCATCTCAATCACTAACAACTCTCCACTCTATAAGAGTGAACC-GCTCCAAA
1 CCCCCCATCTCAATCACT-ACAACTCTCCACTCTATAAGAGTGAACCAACTCCAAA
836534 CCTCCACCATCT
1 CC-CC-CCATCT
836546 TCTCTATTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
55 6 0.11
56 20 0.35
57 31 0.54
ACGTcount: A:0.29, C:0.39, G:0.07, T:0.24
Consensus pattern (55 bp):
CCCCCCATCTCAATCACTACAACTCTCCACTCTATAAGAGTGAACCAACTCCAAA
Found at i:836775 original size:15 final size:15
Alignment explanation
Indices: 836755--836785 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
836745 GTCATGTAAG
836755 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
*
836770 TGAAAGGTCTAGAGT
1 TGAAAGGTCAAGAGT
836785 T
1 T
836786 ATATTGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:836976 original size:17 final size:17
Alignment explanation
Indices: 836943--836981 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
836933 TAAGCTTTTG
836943 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
836960 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
836977 ATTTT
1 ATTTT
836982 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:837747 original size:15 final size:15
Alignment explanation
Indices: 837723--837752 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
837713 TGGAGATCGA
*
837723 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
837738 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
837753 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:841132 original size:15 final size:15
Alignment explanation
Indices: 841112--841142 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
841102 GTCATGTAAG
841112 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
*
841127 TGAAAGGTCTAGAGT
1 TGAAAGGTCAAGAGT
841142 T
1 T
841143 ATATTGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:841333 original size:17 final size:17
Alignment explanation
Indices: 841300--841338 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
841290 TAAGCTTTTG
841300 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
841317 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
841334 ATTTT
1 ATTTT
841339 CCACACAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:852000 original size:13 final size:13
Alignment explanation
Indices: 851982--852007 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
851972 AAAGTGCGAG
851982 CCTGTTGAAGACA
1 CCTGTTGAAGACA
851995 CCTGTTGAAGACA
1 CCTGTTGAAGACA
852008 ATGTGCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:853598 original size:20 final size:20
Alignment explanation
Indices: 853573--853622 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
853563 TGGCTTAAAA
853573 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
853593 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
853610 GTGGTAGTGGATT
1 TTGGTAGTGGATT
853623 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:858225 original size:20 final size:20
Alignment explanation
Indices: 858200--858249 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
858190 TGGCTTAAAA
858200 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
858220 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
858237 GTGGTAGTGGATT
1 TTGGTAGTGGATT
858250 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:860433 original size:510 final size:511
Alignment explanation
Indices: 859436--860481 Score: 1842
Period size: 510 Copynumber: 2.0 Consensus size: 511
859426 TTCTGATGGG
* *
859436 ATTTGAGTACGATAAACCTTGGCGACGAAAATGGCTTATTCGCAAGCAACTCCCAGTCGATGACT
1 ATTTGAGCACCATAAACCTTGGCGACGAAAATGGC-T-TTCGCAAGCAACTCCCAGTCGATGACT
* *
859501 GTGAAGAGATCACAGGAGTTACCATCGAAAACTCTGTAGTTTGCCAACACGCAGTTATTAAACGT
64 GTGAAGAGATCACAGGAATTACCATCGAAAACTCTGTAGTTTGCCAACACACAGTTATTAAACGT
* *
859566 TGGAGAATCTACCCACCATAAGCATAAATAGCAACCTGATTGCACATGCATAATTCGGATCTTAT
129 TGGAGAATCTACCCACCATAAACATAAATAGCAACCTGATTGCACATGCATAAGTCGGATCTTAT
* *
859631 TTGTTGCAGTGTCCACCGGGATAAGTTTGAACAACGTGCACGACTCCTCGGACCGGCCTTCTTCC
194 TTGTTGCAGTGTCCACCGGGATAAGCTTGAACAACGTGCACGACTCCTCGGACCGGCCTTCCTCC
*
859696 GGCTTGTCGGCTGCTGCAGAAATCCAATACTGCTCTTTTGAGTTTCCAGTGATGGAAACATTTTT
259 GGCTTGTCGGCGGCTGCAGAAATCCAATACTGCTCTTTTGAGTTTCCAGTGATGGAAACATTTTT
*
859761 GACTCGTTTGCAGTATTTTTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCCACTGC
324 GACTCGTTTGCAGTATTTGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCCACTGC
* * *
859826 ATTTGGCCCTTTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATTTGATA
389 ATTTGGCCCTCTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATCTGAGA
* *
859891 TACCCATTACAATCGTAACTCTCATACATATAGCTCAAATATTTGTTCCTCGCCTCAC
454 TACCCATGACAATCGGAACTCTCATACATATAGCTCAAATATTTGTTCCTCGCCTCAC
* *
859949 ATTTGATCACCATAAACCTTGGCGACGCAAATGGC-TTCGCAAGCAACTCCCAGTCGATGACTGT
1 ATTTGAGCACCATAAACCTTGGCGACGAAAATGGCTTTCGCAAGCAACTCCCAGTCGATGACTGT
* *
860013 GAAGAGATCACAGGAATTACCATCGAAAACTTTGTAGTTTGCCAACACACATTTATTAAACGTTG
66 GAAGAGATCACAGGAATTACCATCGAAAACTCTGTAGTTTGCCAACACACAGTTATTAAACGTTG
860078 GAGAATCTACCCACCATAAACATAAATAGCAACCTGATTGCACATGCATAAGTCGGATCTTATTT
131 GAGAATCTACCCACCATAAACATAAATAGCAACCTGATTGCACATGCATAAGTCGGATCTTATTT
* *
860143 GTTGCAGTGTCCACTGGGATAAGCTTGAACAACGTGCACGACTCCTCGGATCGGCCTTCCTCCGG
196 GTTGCAGTGTCCACCGGGATAAGCTTGAACAACGTGCACGACTCCTCGGACCGGCCTTCCTCCGG
860208 CTTGTCGGCGGCTGCAGAAATCCAATACTGCTCTTTTGAGTTTCCAGTGATGGAAACATTTTTGA
261 CTTGTCGGCGGCTGCAGAAATCCAATACTGCTCTTTTGAGTTTCCAGTGATGGAAACATTTTTGA
860273 CTCGTTTGCAGTATTTGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCCACTGCAT
326 CTCGTTTGCAGTATTTGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCCACTGCAT
* *
860338 TTGGCCCTCTCCACCTCAAATTTTGTGTGTGGACTGCAAGCCAAAGTTTCCGAAAATCTGAGATA
391 TTGGCCCTCTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATCTGAGATA
* *
860403 CCCATGACAATTGGAACTCTCATGCATATAGCTCAAATATTTGTTCCTCGCCTCAC
456 CCCATGACAATCGGAACTCTCATACATATAGCTCAAATATTTGTTCCTCGCCTCAC
860459 ATTTGAGCACCATAAACCTTGGC
1 ATTTGAGCACCATAAACCTTGGC
860482 CATGCAATTG
Statistics
Matches: 507, Mismatches: 26, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
510 476 0.94
513 31 0.06
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (511 bp):
ATTTGAGCACCATAAACCTTGGCGACGAAAATGGCTTTCGCAAGCAACTCCCAGTCGATGACTGT
GAAGAGATCACAGGAATTACCATCGAAAACTCTGTAGTTTGCCAACACACAGTTATTAAACGTTG
GAGAATCTACCCACCATAAACATAAATAGCAACCTGATTGCACATGCATAAGTCGGATCTTATTT
GTTGCAGTGTCCACCGGGATAAGCTTGAACAACGTGCACGACTCCTCGGACCGGCCTTCCTCCGG
CTTGTCGGCGGCTGCAGAAATCCAATACTGCTCTTTTGAGTTTCCAGTGATGGAAACATTTTTGA
CTCGTTTGCAGTATTTGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCCACTGCAT
TTGGCCCTCTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATCTGAGATA
CCCATGACAATCGGAACTCTCATACATATAGCTCAAATATTTGTTCCTCGCCTCAC
Found at i:861338 original size:30 final size:30
Alignment explanation
Indices: 861292--861385 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
861282 TTTTATTATG
*
861292 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
861323 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
861353 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
861383 CCA
1 CCA
861386 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:861347 original size:15 final size:15
Alignment explanation
Indices: 861302--861379 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
861292 CCAATATCTC
861302 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
861317 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
861332 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
861347 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
861362 GATACCCATATCTTT
1 GATACCCATATCTTT
861377 GAT
1 GAT
861380 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:865999 original size:30 final size:30
Alignment explanation
Indices: 865953--866046 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
865943 TTTTATTATG
*
865953 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
865984 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
866014 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
866044 CCA
1 CCA
866047 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:866008 original size:15 final size:15
Alignment explanation
Indices: 865963--866040 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
865953 CCAATATCTC
865963 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
865978 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
865993 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
866008 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
866023 GATACCCATATCTTT
1 GATACCCATATCTTT
866038 GAT
1 GAT
866041 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:869113 original size:14 final size:14
Alignment explanation
Indices: 869094--869124 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
869084 TTAATGGACC
869094 TAAATTTAATAAAA
1 TAAATTTAATAAAA
869108 TAAATTTAATAAAA
1 TAAATTTAATAAAA
869122 TAA
1 TAA
869125 TTCTAGTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAATTTAATAAAA
Found at i:875059 original size:510 final size:511
Alignment explanation
Indices: 874208--875253 Score: 1733
Period size: 510 Copynumber: 2.0 Consensus size: 511
874198 TTCTGATGGG
*
874208 ATTTGAGCACGATAAACCTTGGCGACGCAAATGGCTTATTCGCAAGCAACTCCCAGTCGATGACT
1 ATTTGAGCACCATAAACCTTGGCGACGCAAATGGCTTATTCGCAAGCAACTCCCAGTCGATGACT
874273 GTGAAGAGATCACAGGAATTATCATCGAAAACTTCGTAGTTTGCCAACACACAGTTATTAAACGT
66 GTGAAGAGATCACAGGAATTATCATCGAAAACTTCGTAGTTTGCCAACACACAGTTATTAAACGT
*
874338 TGGAGGATCTACCCACCATAAGCATAAATAGCATCCTGATTGCACATGCATAATTCGGATCTTAT
131 TGGAGGATCTACCCACCATAAGCATAAATAGCAACCTGATTGCACATGCATAATTCGGATCTTAT
* * * *
874403 TTGTTGCAGTGTCTACCGGGATAAGTTTGAACAACGTGCACGACTTCTTGGATCGGACTTCCACC
196 TTGTTGCAGTGTCCACCGGGATAAGCTTGAACAACGTGCACGAATCCTTGGATCGGACTTCCACC
* * * *
874468 GGCTTGTCGGCTGCTGCAGAAATCCAATACTGCTCTTTTGAGTTTCCAGTGATGGAAACATTTTT
261 GGCTGGCCGGCGGCTGCAGAAATCCAATACTGCTCTTTTAAGTTTCCAGTGATGGAAACATTTTT
*
874533 GACTCGTTTGCAGTATTGGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTT-CC-C-CA-
326 GACTCGTTTCCAGTATTGGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCACGCAT
* *
874594 TTGGCCCTTTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATTTGAGATA
391 TTGGCCCTCTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATCTGAGATA
874659 CCCATTACAATCGCAACTCTCACGCATATAGCTCAAATATTTGTTCCTT-GCCTCAC
456 CCCATTACAATCGCAACTCTCACGCATATAGCTCAAATATTTGTT-CTTCGCCTCAC
874715 ATTTGAGCACCATAAACCTTGGCGACGCAAATGGCTTATTCGCAAGCAACTCCCAGTCGATGACT
1 ATTTGAGCACCATAAACCTTGGCGACGCAAATGGCTTATTCGCAAGCAACTCCCAGTCGATGACT
* * * *
874780 GTGAAGAGATCGCAGGAATTATCACCATCGAAAACTTTGTCGTTTGCCAACACATAGTTATTAAA
66 GTGAAGAGATCACAGGAATTAT---CATCGAAAACTTCGTAGTTTGCCAACACACAGTTATTAAA
* * *
874845 CTTTGGAGGATCTACCCAGCATAAGCATAAGTAGCAACCTGATTGCACATGCATAATTCGGATCT
128 CGTTGGAGGATCTACCCACCATAAGCATAAATAGCAACCTGATTGCACATGCATAATTCGGATCT
* *
874910 TATTTGTTGCAGTGTCCACTGGGATAAGCTTGAACAACGTGCACGAATCCTTGGATCGGCCTTCC
193 TATTTGTTGCAGTGTCCACCGGGATAAGCTTGAACAACGTGCACGAATCCTTGGATCGGACTTCC
* *
874975 TCCGGCTGGCCGGCGGCTGCAGAAATCCAATACTGCTCTTTTAATTTTCCAGTGATGGAAACATT
258 ACCGGCTGGCCGGCGGCTGCAGAAATCCAATACTGCTCTTTTAAGTTTCCAGTGATGGAAACATT
* *
875040 TTTTACTCGTTTCCAGTATTTGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCCAC
323 TTTGACTCGTTTCCAGTATTGGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTT-CCCAC
**
875105 TGCATTTGGCCCTCTCCACCTCAAATTTTGTGTATGGACTGCCAGCCAAAGTTTCCGAAAATCTG
387 -GCATTTGGCCCTCTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATCTG
*
875170 AGATACCCATTACAATCGCAACTCTCATGCATATAGCTCAAATATTTGTTCTTCGCCTCAC
451 AGATACCCATTACAATCGCAACTCTCACGCATATAGCTCAAATATTTGTTCTTCGCCTCAC
*
875231 ATTTGAGCACCATAAACGTTGGC
1 ATTTGAGCACCATAAACCTTGGC
875254 CATGCAATTG
Statistics
Matches: 499, Mismatches: 30, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
507 85 0.17
510 272 0.55
512 2 0.00
513 1 0.00
515 5 0.01
516 134 0.27
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (511 bp):
ATTTGAGCACCATAAACCTTGGCGACGCAAATGGCTTATTCGCAAGCAACTCCCAGTCGATGACT
GTGAAGAGATCACAGGAATTATCATCGAAAACTTCGTAGTTTGCCAACACACAGTTATTAAACGT
TGGAGGATCTACCCACCATAAGCATAAATAGCAACCTGATTGCACATGCATAATTCGGATCTTAT
TTGTTGCAGTGTCCACCGGGATAAGCTTGAACAACGTGCACGAATCCTTGGATCGGACTTCCACC
GGCTGGCCGGCGGCTGCAGAAATCCAATACTGCTCTTTTAAGTTTCCAGTGATGGAAACATTTTT
GACTCGTTTCCAGTATTGGTTGTTGTGGCAGCTCTTTATGTGCACCAACCCATCTTCCCACGCAT
TTGGCCCTCTCCACCTCAAATTTTGTGTATGGACTGAAAGCCAAAGTTTCCGAAAATCTGAGATA
CCCATTACAATCGCAACTCTCACGCATATAGCTCAAATATTTGTTCTTCGCCTCAC
Found at i:876910 original size:19 final size:19
Alignment explanation
Indices: 876886--876925 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
876876 TCTTAAAAAA
*
876886 TATTTTATTATATTTTACT
1 TATTTTAATATATTTTACT
*
876905 TATTTTAATATATTTTGCT
1 TATTTTAATATATTTTACT
876924 TA
1 TA
876926 CATCACTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (19 bp):
TATTTTAATATATTTTACT
Found at i:878836 original size:50 final size:50
Alignment explanation
Indices: 878761--878953 Score: 192
Period size: 50 Copynumber: 3.7 Consensus size: 50
878751 GATCATAGCA
* *
878761 TGCCAAAGTCATGTCCCAGACATGGTCTTACA-GGGAACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGG-ACCTCTCATCTCAG
* * *
878811 TGCCAACGCTATG-CCTTAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCC-CAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * *
878861 TGCTAACGCCATGTCCCAAATATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC-A-G
* * * *
878916 ATGTCAATGTCATGTCCTAGACATGGTCTTACATGGGA
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
878954 TCCCTTTACC
Statistics
Matches: 116, Mismatches: 18, Indels: 12
0.79 0.12 0.08
Matches are distributed among these distances:
49 2 0.02
50 73 0.63
51 5 0.04
53 5 0.04
55 1 0.01
56 30 0.26
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:886105 original size:15 final size:15
Alignment explanation
Indices: 886085--886130 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
886075 TAGCAAAGAA
886085 GAACCCCTCACCTCT
1 GAACCCCTCACCTCT
886100 GAACCCCTCACCTCT
1 GAACCCCTCACCTCT
*
886115 GAACCCCCCACCTCT
1 GAACCCCTCACCTCT
886130 G
1 G
886131 GAAATCAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.20, C:0.54, G:0.09, T:0.17
Consensus pattern (15 bp):
GAACCCCTCACCTCT
Found at i:893753 original size:68 final size:68
Alignment explanation
Indices: 893644--893777 Score: 259
Period size: 68 Copynumber: 2.0 Consensus size: 68
893634 TGTTCAATTA
893644 AGCTAAATAAATTTGTGTTTCCTTTTGTCGAAGCACTCTCTGTTTTCTTATTAGTAACTACGTCA
1 AGCTAAATAAATTTGTGTTTCCTTTTGTCGAAGCACTCTCTGTTTTCTTATTAGTAACTACGTCA
893709 TTT
66 TTT
*
893712 AGCTAAATAAATTTGTGTTTCCTTTTGTCGAAGCACTCTCTGTTTTCTTATTAGTAACTATGTCA
1 AGCTAAATAAATTTGTGTTTCCTTTTGTCGAAGCACTCTCTGTTTTCTTATTAGTAACTACGTCA
893777 T
66 T
893778 GCACTCTTTA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (68 bp):
AGCTAAATAAATTTGTGTTTCCTTTTGTCGAAGCACTCTCTGTTTTCTTATTAGTAACTACGTCA
TTT
Found at i:893801 original size:3 final size:3
Alignment explanation
Indices: 893795--893823 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
893785 TTATTATGAA
893795 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
893824 ATAAGTTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:901135 original size:22 final size:21
Alignment explanation
Indices: 901107--901167 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
901097 CTTCGTAATT
901107 TCATTTATTATAT-TTATATTG
1 TCATTTATTATATATTATA-TG
901128 CTCATTTATTTGATATATTATATG
1 -TCATTTA-TT-ATATATTATATG
* *
901152 TCATTCATTATTTATT
1 TCATTTATTATATATT
901168 TGTTCATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 6 0.18
22 9 0.26
23 8 0.24
24 6 0.18
25 5 0.15
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (21 bp):
TCATTTATTATATATTATATG
Found at i:902407 original size:28 final size:27
Alignment explanation
Indices: 902355--902410 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
902345 TTTTATATTA
902355 ATTTTATTATAAGTTTTTATCATGTCT
1 ATTTTATTATAAGTTTTTATCATGTCT
* *
902382 ATTTCTATT-TAATTTTTATATGATGTCT
1 ATTT-TATTATAAGTTTT-TATCATGTCT
902410 A
1 A
902411 AAACTATTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (27 bp):
ATTTTATTATAAGTTTTTATCATGTCT
Found at i:906587 original size:3 final size:3
Alignment explanation
Indices: 906579--906625 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
906569 AAAATGTTTG
906579 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
906626 GGAACATGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:908628 original size:17 final size:17
Alignment explanation
Indices: 908606--908640 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
908596 AACTTAGTGC
908606 CTTCACATATATAATTT
1 CTTCACATATATAATTT
908623 CTTCACATATATAATTT
1 CTTCACATATATAATTT
908640 C
1 C
908641 CGCATGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (17 bp):
CTTCACATATATAATTT
Found at i:909004 original size:13 final size:13
Alignment explanation
Indices: 908986--909010 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
908976 TCAAAATTTA
908986 AAAAAAATTAGGT
1 AAAAAAATTAGGT
908999 AAAAAAATTAGG
1 AAAAAAATTAGG
909011 CTCATTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (13 bp):
AAAAAAATTAGGT
Found at i:909231 original size:16 final size:16
Alignment explanation
Indices: 909212--909245 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
909202 ATAAAATTAT
909212 TAATATTAAAT-TAAAA
1 TAATA-TAAATATAAAA
909228 TAATATAAATATAAAA
1 TAATATAAATATAAAA
909244 TA
1 TA
909246 CAGACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TAATATAAATATAAAA
Found at i:910254 original size:9 final size:9
Alignment explanation
Indices: 910240--910297 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
910230 TTTGGTTAAA
910240 AATTAACCG
1 AATTAACCG
910249 AATTAACCG
1 AATTAACCG
*
910258 AATTACCCG
1 AATTAACCG
910267 AATTAACCG
1 AATTAACCG
*
910276 AATTAACCA
1 AATTAACCG
*
910285 AATTAACCA
1 AATTAACCG
910294 AATT
1 AATT
910298 GAATCACTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.47, C:0.22, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:911333 original size:6 final size:6
Alignment explanation
Indices: 911322--911361 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
911312 TAATGATCCT
911322 CCATAG CCATAG CCATAG CCATAG CCATAG CCATAG CCAT
1 CCATAG CCATAG CCATAG CCATAG CCATAG CCATAG CCAT
911362 GGCCTGCTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.35, G:0.15, T:0.17
Consensus pattern (6 bp):
CCATAG
Found at i:912829 original size:46 final size:46
Alignment explanation
Indices: 912740--912836 Score: 133
Period size: 46 Copynumber: 2.1 Consensus size: 46
912730 TAATTTAAAA
*
912740 TTTTATAAACTATAAAAAGCCTAAATGAAAAAAAAATACTTTTTAT
1 TTTTATAAACTATAAAAAGCCGAAATGAAAAAAAAATACTTTTTAT
* * *
912786 TTTTATAAACTATAAAAAGCCGAATAT-AATAAATATATATTTTTTAT
1 TTTTATAAACTATAAAAAGCCGAA-ATGAA-AAAAAAATACTTTTTAT
912833 TTTT
1 TTTT
912837 TAATTTTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
46 25 0.56
47 20 0.44
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.41
Consensus pattern (46 bp):
TTTTATAAACTATAAAAAGCCGAAATGAAAAAAAAATACTTTTTAT
Found at i:912844 original size:15 final size:15
Alignment explanation
Indices: 912824--912869 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
912814 ATAAATATAT
*
912824 ATTTTTTATTTTTTA
1 ATTTTTTATTTTTAA
* *
912839 ATTTTTAATTTTAAA
1 ATTTTTTATTTTTAA
*
912854 ATATTTTATTTTTAA
1 ATTTTTTATTTTTAA
912869 A
1 A
912870 ATATTTTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTTTATTTTTAA
Done.