Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 203 of 216
Found at i:63020369 original size:25 final size:26
Alignment explanation
Indices: 63020326--63020381 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
63020316 AACTAAAGTG
* *
63020326 ATAAATTTAAATTATATTAATATTAA
1 ATAAATTTAAATTATATTAAAATAAA
63020352 ATAAATTT-AATTATATTAAAATAAA
1 ATAAATTTAAATTATATTAAAATAAA
63020377 ATAAA
1 ATAAA
63020382 ATAATATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (26 bp):
ATAAATTTAAATTATATTAAAATAAA
Found at i:63020388 original size:21 final size:20
Alignment explanation
Indices: 63020343--63020394 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 20
63020333 TAAATTATAT
**
63020343 TAATATT-AAATAAATTTAA
1 TAATATTAAAATAAATAAAA
*
63020362 TTATATTAAAATAAAATAAAA
1 TAATATTAAAAT-AAATAAAA
*
63020383 TAATATAAAAAT
1 TAATATTAAAAT
63020395 CTACCACCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 6 0.23
20 4 0.15
21 16 0.62
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TAATATTAAAATAAATAAAA
Found at i:63021111 original size:11 final size:11
Alignment explanation
Indices: 63021097--63021174 Score: 85
Period size: 11 Copynumber: 7.4 Consensus size: 11
63021087 ATTTTTTTAA
63021097 TTTTAAAATAT
1 TTTTAAAATAT
*
63021108 TTTTAAAATAC
1 TTTTAAAATAT
63021119 TTTTAAAATACTT
1 TTTTAAAATA--T
63021132 TTTTAAAAT-T
1 TTTTAAAATAT
*
63021142 TTTT----TAA
1 TTTTAAAATAT
63021149 TTTTAAAATAT
1 TTTTAAAATAT
63021160 TTTTAAAATAT
1 TTTTAAAATAT
63021171 TTTT
1 TTTT
63021175 TTTAAAATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
6 1 0.02
7 4 0.07
10 5 0.09
11 37 0.66
13 9 0.16
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:63030811 original size:17 final size:19
Alignment explanation
Indices: 63030780--63030815 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
63030770 GTTAGAGGAA
63030780 TTTTATTTATATTAAAATT
1 TTTTATTTATATTAAAATT
63030799 TTTTATTT-T-TTAAAATT
1 TTTTATTTATATTAAAATT
63030816 GAATTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 1 0.06
19 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTATTTATATTAAAATT
Found at i:63036831 original size:19 final size:18
Alignment explanation
Indices: 63036828--63036870 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
63036818 TTTAAAATAC
*
63036828 TTTTAAAATAATTTTTTAT
1 TTTTAAAAT-ATTTTTTAA
63036847 TTTTAAAATATTTTTTAA
1 TTTTAAAATATTTTTTAA
63036865 TGTTTA
1 T-TTTA
63036871 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTAAAATATTTTTTAA
Found at i:63036849 original size:18 final size:18
Alignment explanation
Indices: 63036828--63036863 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
63036818 TTTAAAATAC
63036828 TTTTAAAATAATTTTTTAT
1 TTTTAAAAT-ATTTTTTAT
63036847 TTTTAAAATATTTTTTA
1 TTTTAAAATATTTTTTA
63036864 ATGTTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTAAAATATTTTTTAT
Found at i:63036875 original size:30 final size:30
Alignment explanation
Indices: 63036787--63036876 Score: 74
Period size: 30 Copynumber: 2.9 Consensus size: 30
63036777 CCGAATATAA
* *
63036787 TAAATATATTTTTTTATTTTTATTTTTTAATTT
1 TAAA-ATATTTTTTAATATTTA--TTTTAATTT
** * *
63036820 TAAAATACTTTTAAAATAATT-TTTTATTTT
1 TAAAATA-TTTTTTAATATTTATTTTAATTT
*
63036850 TAAAATATTTTTTAATGTTTATTTTAA
1 TAAAATATTTTTTAATATTTATTTTAA
63036877 AAATGGGCCG
Statistics
Matches: 44, Mismatches: 11, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
29 9 0.20
30 20 0.45
32 3 0.07
33 12 0.27
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (30 bp):
TAAAATATTTTTTAATATTTATTTTAATTT
Found at i:63037911 original size:27 final size:26
Alignment explanation
Indices: 63037806--63037912 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 26
63037796 ATGATAAAAA
63037806 TATAATTTTATTATTTT-AA-TAAAT
1 TATAATTTTATTATTTTAAATTAAAT
* *
63037830 TATATTTTTATAAGTTTTAAAAGATTAAAT
1 TATAATTTTATTA-TTTT--AA-ATTAAAT
*
63037860 TA-AATTTTTATTATTTTGAGATTAAAT
1 TATAA-TTTTATTATTTT-AAATTAAAT
*
63037887 TATAATTTTATTATTATTAATTTAAA
1 TATAATTTTATTATT-TTAAATTAAA
63037913 ATTTTATAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
24 11 0.17
25 4 0.06
27 25 0.38
28 6 0.09
29 6 0.09
30 14 0.21
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (26 bp):
TATAATTTTATTATTTTAAATTAAAT
Found at i:63038932 original size:29 final size:32
Alignment explanation
Indices: 63038881--63038946 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 32
63038871 CCAACCTGAA
63038881 TATATAATGTTATAAAAAATATTATAT-TAAT
1 TATATAATGTTATAAAAAATATTATATATAAT
* * *
63038912 TATAT-ATGTTA-AATAATTATTATATATATT
1 TATATAATGTTATAAAAAATATTATATATAAT
63038942 TATAT
1 TATAT
63038947 TAAATCACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 12 0.39
30 14 0.45
31 5 0.16
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (32 bp):
TATATAATGTTATAAAAAATATTATATATAAT
Found at i:63041924 original size:16 final size:16
Alignment explanation
Indices: 63041900--63041941 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
63041890 GAAAATTGGA
*
63041900 AAGAT-GAAAAATTG-
1 AAGATAGAAAAATAGC
63041914 AAGAATAGAAAAATAGC
1 AAG-ATAGAAAAATAGC
63041931 AAGATAGAAAA
1 AAGATAGAAAA
63041942 TATATTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 3 0.12
15 2 0.08
16 16 0.67
17 3 0.12
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.14
Consensus pattern (16 bp):
AAGATAGAAAAATAGC
Found at i:63042887 original size:21 final size:21
Alignment explanation
Indices: 63042863--63042902 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
63042853 CTTTAGTTAA
63042863 TGATGATAATCCTTT-TTTCAC
1 TGATG-TAATCCTTTATTTCAC
*
63042884 TGATGTGATCCTTTATTTC
1 TGATGTAATCCTTTATTTC
63042903 TGCACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (21 bp):
TGATGTAATCCTTTATTTCAC
Found at i:63043097 original size:33 final size:33
Alignment explanation
Indices: 63043055--63043124 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
63043045 AAGCTGAAGA
63043055 TGTTGGATAGACTATCTATCTTGTTTCACACAT
1 TGTTGGATAGACTATCTATCTTGTTTCACACAT
63043088 TGTTGGATAGACTATCTATCTTGTTTCACACAT
1 TGTTGGATAGACTATCTATCTTGTTTCACACAT
63043121 TGTT
1 TGTT
63043125 TTTGATTCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTTGGATAGACTATCTATCTTGTTTCACACAT
Found at i:63045453 original size:51 final size:51
Alignment explanation
Indices: 63045372--63045470 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
63045362 GATGCTAGGT
* *
63045372 TGGATCAGGCTGCTGAATCAAGAAAAGAAGTTGGAATATCTGGGAGAAGTG
1 TGGAGCAGGCTGCTGAATCAAGAAAAGAAGTTGGAATAACTGGGAGAAGTG
* *
63045423 TGGAGCAGGCTGCTGATTCAAGAAACGAAGTTGGAATAACTGGGAGAA
1 TGGAGCAGGCTGCTGAATCAAGAAAAGAAGTTGGAATAACTGGGAGAA
63045471 ATTTAGAGCC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.20
Consensus pattern (51 bp):
TGGAGCAGGCTGCTGAATCAAGAAAAGAAGTTGGAATAACTGGGAGAAGTG
Found at i:63045526 original size:60 final size:60
Alignment explanation
Indices: 63045432--63045599 Score: 196
Period size: 60 Copynumber: 2.8 Consensus size: 60
63045422 GTGGAGCAGG
* * * * * **
63045432 CTGCTGATTCAAGAAACGAAGTTGGAATAACTGGGAGAAATTTAGAGCCAAGTCAACTTA
1 CTGCTGAATCTAGAAAAGAAGTTGGAATAGCTGGGAGAAATTTAGAGCCAAGCCAACCGA
* *
63045492 CTGCTGAATCTAGAAAAGAAGTTGGAATAGCTGGGA-AGAGTTTAGAGCCAAGCCAACCGG
1 CTGCTGAATCTAGAAAAGAAGTTGGAATAGCTGGGAGA-AATTTAGAGCCAAGCCAACCGA
* * *
63045552 CTGCTGAATCTAGAAAAGAAGCTGGAATAG-TCGGGAGAACTTTGGAGC
1 CTGCTGAATCTAGAAAAGAAGTTGGAATAGCT-GGGAGAAATTTAGAGC
63045600 AGGGAGCTGA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
59 2 0.02
60 90 0.97
61 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21
Consensus pattern (60 bp):
CTGCTGAATCTAGAAAAGAAGTTGGAATAGCTGGGAGAAATTTAGAGCCAAGCCAACCGA
Found at i:63050627 original size:30 final size:26
Alignment explanation
Indices: 63050567--63050627 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 26
63050557 CTCTCAAAAC
* *
63050567 TAAATAAAATATTTTATAATTATATT
1 TAAATAAAATATTTTATAAATATAGT
63050593 TAAATAAAATATATTTATTAAATAGTAAGT
1 TAAATAAAATAT-TTTA-TAAATA-T-AGT
63050623 TAAAT
1 TAAAT
63050628 TTGAGTAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 12 0.41
27 4 0.14
28 5 0.17
29 1 0.03
30 7 0.24
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (26 bp):
TAAATAAAATATTTTATAAATATAGT
Found at i:63053627 original size:3 final size:3
Alignment explanation
Indices: 63053621--63053647 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
63053611 TCTTGTTGTA
63053621 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
63053648 GCGGCGGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:63063402 original size:20 final size:20
Alignment explanation
Indices: 63063374--63063412 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63063364 CCAATTTATT
* *
63063374 AACTCAAACCCATAAAATCC
1 AACTAAAACCAATAAAATCC
63063394 AACTAAAACCAATAAAATC
1 AACTAAAACCAATAAAATC
63063413 TAATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.15
Consensus pattern (20 bp):
AACTAAAACCAATAAAATCC
Found at i:63064758 original size:5 final size:5
Alignment explanation
Indices: 63064748--63064784 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
63064738 CAACAGCAGA
63064748 AGATG AGATG AGATG AGATG AGATG AGGATTG AGATG
1 AGATG AGATG AGATG AGATG AGATG A-GA-TG AGATG
63064785 GCCCACTAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 23 0.77
6 4 0.13
7 3 0.10
ACGTcount: A:0.38, C:0.00, G:0.41, T:0.22
Consensus pattern (5 bp):
AGATG
Found at i:63071970 original size:46 final size:46
Alignment explanation
Indices: 63071918--63072014 Score: 194
Period size: 46 Copynumber: 2.1 Consensus size: 46
63071908 TCAATTTAAC
63071918 TTTTTCACTAAATTTTATTATTAATCTTTTACAAAGATTCAAAATT
1 TTTTTCACTAAATTTTATTATTAATCTTTTACAAAGATTCAAAATT
63071964 TTTTTCACTAAATTTTATTATTAATCTTTTACAAAGATTCAAAATT
1 TTTTTCACTAAATTTTATTATTAATCTTTTACAAAGATTCAAAATT
63072010 TTTTT
1 TTTTT
63072015 TATAAAAATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.35, C:0.10, G:0.02, T:0.53
Consensus pattern (46 bp):
TTTTTCACTAAATTTTATTATTAATCTTTTACAAAGATTCAAAATT
Found at i:63076572 original size:23 final size:23
Alignment explanation
Indices: 63076545--63076593 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
63076535 GGAAAATGTA
*
63076545 AAATTAATCTTTATATATTAAAT
1 AAATTAATCTTTATACATTAAAT
* *
63076568 AAATTCATCTTTATACGTTAAAT
1 AAATTAATCTTTATACATTAAAT
63076591 AAA
1 AAA
63076594 ACACCAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATTAATCTTTATACATTAAAT
Found at i:63084668 original size:12 final size:12
Alignment explanation
Indices: 63084653--63084682 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
63084643 AAAATCGAGA
63084653 AAAAATTATTCT
1 AAAAATTATTCT
63084665 AAAAATTATTCT
1 AAAAATTATTCT
63084677 AAAAAT
1 AAAAAT
63084683 CAAAAGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (12 bp):
AAAAATTATTCT
Found at i:63095170 original size:50 final size:49
Alignment explanation
Indices: 63095090--63095219 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 49
63095080 GGGTAAAGAG
* *
63095090 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCG-ATATGAGAAC
1 ATCCCATGTAAGACCATATCTGGGACATGGCATGGGCA--GTACATGA-AAC
* *
63095141 -TCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACATGAAAC
1 ATCCCATGTAAGACCATATCTGGGACATGGCATGGGCAGTACATGAAAC
63095189 ATCCCATGTAAGACCATGA-CTGGGACATGGC
1 ATCCCATGTAAGACCAT-ATCTGGGACATGGC
63095220 TTTGGCATGT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
48 4 0.06
49 32 0.45
50 35 0.49
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (49 bp):
ATCCCATGTAAGACCATATCTGGGACATGGCATGGGCAGTACATGAAAC
Found at i:63095212 original size:49 final size:50
Alignment explanation
Indices: 63095090--63095226 Score: 174
Period size: 49 Copynumber: 2.8 Consensus size: 50
63095080 GGGTAAAGAG
* * *
63095090 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 ATCCCATGTAAGACCATGACTGGGACATGGCATTGGCA-CGACATGAGAAC
*
63095141 -TCCCATGTAAGACCAT-ATCTGGGATATGGCATTGGCA-GTACATGA-AAC
1 ATCCCATGTAAGACCATGA-CTGGGACATGGCATTGGCACG-ACATGAGAAC
*
63095189 ATCCCATGTAAGACCATGACTGGGACATGGCTTTGGCA
1 ATCCCATGTAAGACCATGACTGGGACATGGCATTGGCA
63095227 TGTTATTATC
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
48 4 0.05
49 38 0.50
50 34 0.45
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (50 bp):
ATCCCATGTAAGACCATGACTGGGACATGGCATTGGCACGACATGAGAAC
Found at i:63101884 original size:18 final size:19
Alignment explanation
Indices: 63101861--63101898 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
63101851 ACCCTTAAAA
*
63101861 TTGAATTATT-AAATTTTT
1 TTGAATGATTAAAATTTTT
*
63101879 TTGAATGGTTAAAATTTTT
1 TTGAATGATTAAAATTTTT
63101898 T
1 T
63101899 AAATATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.58
Consensus pattern (19 bp):
TTGAATGATTAAAATTTTT
Found at i:63103754 original size:19 final size:20
Alignment explanation
Indices: 63103717--63103764 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
63103707 AAAATGTTAT
*
63103717 TAAATTTATCATAAGAGAATA
1 TAAATTTATCATAAAAGAA-A
63103738 TAAATTT-T-ATAAAAGAAA
1 TAAATTTATCATAAAAGAAA
63103756 TCAAATTTA
1 T-AAATTTA
63103765 AAAGTTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 2 0.08
19 14 0.58
20 1 0.04
21 7 0.29
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.35
Consensus pattern (20 bp):
TAAATTTATCATAAAAGAAA
Found at i:63111781 original size:14 final size:15
Alignment explanation
Indices: 63111759--63111835 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
63111749 CAATCAAACA
63111759 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
63111773 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
63111788 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
63111808 CCA-AAAATCATTTT
1 CCAGAAAATCATTTT
* *
63111822 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
63111836 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 20 0.40
15 16 0.32
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:63111819 original size:34 final size:35
Alignment explanation
Indices: 63111763--63111829 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
63111753 CAAACACCAG
* *
63111763 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
*
63111798 AAAACATTTTCCA-AAAATCATTTTACGGAAAA
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAA
63111830 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
Found at i:63114833 original size:20 final size:21
Alignment explanation
Indices: 63114808--63114847 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
63114798 GTAGAAAAGT
* *
63114808 TGAACCGA-TAAAAACTCAAC
1 TGAACCAAGTAAAAAATCAAC
63114828 TGAACCAAGTAAAAAATCAA
1 TGAACCAAGTAAAAAATCAA
63114848 TTAAAACGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.55, C:0.20, G:0.10, T:0.15
Consensus pattern (21 bp):
TGAACCAAGTAAAAAATCAAC
Found at i:63116763 original size:34 final size:32
Alignment explanation
Indices: 63116712--63116778 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 32
63116702 TTAATGTGTT
** *
63116712 TTTTTGTCACTTAATTATTAAAAAAATCTTTTA
1 TTTTTGTCACCAAATTATGAAAAAAAT-TTTTA
*
63116745 TTTTTGTCACCAATATTATGAAAAATATTTTTA
1 TTTTTGTCACCAA-ATTATGAAAAAAATTTTTA
63116778 T
1 T
63116779 CACTTAACCG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 17 0.59
34 12 0.41
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (32 bp):
TTTTTGTCACCAAATTATGAAAAAAATTTTTA
Found at i:63116985 original size:19 final size:20
Alignment explanation
Indices: 63116961--63117000 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
63116951 CAAAATTTGA
63116961 ATTTTTTAAT-ATAATGTTT
1 ATTTTTTAATCATAATGTTT
*
63116980 A-TTTTTATTCATAATGTTT
1 ATTTTTTAATCATAATGTTT
63116999 AT
1 AT
63117001 AAAATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (20 bp):
ATTTTTTAATCATAATGTTT
Found at i:63121676 original size:55 final size:55
Alignment explanation
Indices: 63121612--63121723 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
63121602 TATGTCAGCA
63121612 AATTTAACATATCTTAATTATTTTGTCAATTTGGAGTTGTTTTGACAAAAAAAGG
1 AATTTAACATATCTTAATTATTTTGTCAATTTGGAGTTGTTTTGACAAAAAAAGG
63121667 AATTTAACATATCTTAATTATTTTGTCAATTTGGAGTTGTTTTGACAAAAAAAGG
1 AATTTAACATATCTTAATTATTTTGTCAATTTGGAGTTGTTTTGACAAAAAAAGG
63121722 AA
1 AA
63121724 AAAAGCTAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (55 bp):
AATTTAACATATCTTAATTATTTTGTCAATTTGGAGTTGTTTTGACAAAAAAAGG
Found at i:63122385 original size:13 final size:13
Alignment explanation
Indices: 63122367--63122394 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63122357 AATTTTGGAA
63122367 ATATCATATGTAC
1 ATATCATATGTAC
63122380 ATATCATATGTAC
1 ATATCATATGTAC
63122393 AT
1 AT
63122395 GATGTTAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.39
Consensus pattern (13 bp):
ATATCATATGTAC
Found at i:63125561 original size:16 final size:15
Alignment explanation
Indices: 63125540--63125592 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
63125530 TATATTTCAT
63125540 TTTTTTAACTTTTTTA
1 TTTTTTAA-TTTTTTA
* *
63125556 TTTTTTAA-TTATGA
1 TTTTTTAATTTTTTA
*
63125570 TTTTTTAATTTTATA
1 TTTTTTAATTTTTTA
*
63125585 ATTTTTAA
1 TTTTTTAA
63125593 ATTATTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 12 0.40
15 10 0.33
16 8 0.27
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (15 bp):
TTTTTTAATTTTTTA
Found at i:63125575 original size:30 final size:28
Alignment explanation
Indices: 63125540--63125605 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
63125530 TATATTTCAT
* *
63125540 TTTTTTAACTTTTTTATTTTTTAATTATGA
1 TTTTTTAACTTTTATAATTTTTAA--ATGA
*
63125570 TTTTTTAA-TTTTATAATTTTTAAATTA
1 TTTTTTAACTTTTATAATTTTTAAATGA
63125597 TTTTTTAAC
1 TTTTTTAAC
63125606 ATGGCATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 11 0.34
29 13 0.41
30 8 0.25
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (28 bp):
TTTTTTAACTTTTATAATTTTTAAATGA
Found at i:63127496 original size:23 final size:23
Alignment explanation
Indices: 63127459--63127505 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
63127449 GTTTTTTGAA
63127459 TTTTTGAATTATTTTACT-ATTAT
1 TTTTTGAATTATTTTA-TAATTAT
63127482 TTTTTGAA-TATTTTTATAATTAT
1 TTTTTGAATTA-TTTTATAATTAT
63127505 T
1 T
63127506 AAATAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (23 bp):
TTTTTGAATTATTTTATAATTAT
Found at i:63130482 original size:18 final size:19
Alignment explanation
Indices: 63130459--63130503 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
63130449 TAGCCTTCAT
*
63130459 TTAAATGGAA-AAAAAAGG
1 TTAAATAGAATAAAAAAGG
*
63130477 TTAAATAGAATTAAAAGAGG
1 TTAAATAGAA-TAAAAAAGG
63130497 TTAAATA
1 TTAAATA
63130504 CAAATTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
20 14 0.61
ACGTcount: A:0.58, C:0.00, G:0.18, T:0.24
Consensus pattern (19 bp):
TTAAATAGAATAAAAAAGG
Found at i:63130509 original size:21 final size:20
Alignment explanation
Indices: 63130469--63130514 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
63130459 TTAAATGGAA
* *
63130469 AAAAAAGGTTAAATAGAATT
1 AAAAGAGGTTAAATAAAATT
63130489 AAAAGAGGTTAAATACAAATT
1 AAAAGAGGTTAAATA-AAATT
*
63130510 CAAAG
1 AAAAG
63130515 GCTAAAAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.59, C:0.04, G:0.15, T:0.22
Consensus pattern (20 bp):
AAAAGAGGTTAAATAAAATT
Found at i:63135237 original size:18 final size:18
Alignment explanation
Indices: 63135214--63135251 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
63135204 TTAACAGTTA
*
63135214 TAGTTAGCTGTTAGCAGT
1 TAGTTAGCTATTAGCAGT
*
63135232 TAGTTAGTTATTAGCAGT
1 TAGTTAGCTATTAGCAGT
63135250 TA
1 TA
63135252 CTGATGTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (18 bp):
TAGTTAGCTATTAGCAGT
Found at i:63146191 original size:34 final size:34
Alignment explanation
Indices: 63146152--63146220 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
63146142 TTCATAAATA
63146152 TCAGTTATCCTATGTCAAACAGTAAAGACATAAT
1 TCAGTTATCCTATGTCAAACAGTAAAGACATAAT
63146186 TCAGTTATCCTATGTCAAACAGTAAAGACATAAT
1 TCAGTTATCCTATGTCAAACAGTAAAGACATAAT
63146220 T
1 T
63146221 GCAAGTCTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (34 bp):
TCAGTTATCCTATGTCAAACAGTAAAGACATAAT
Found at i:63148808 original size:13 final size:14
Alignment explanation
Indices: 63148790--63148823 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
63148780 GGTTTTTAAA
*
63148790 TTTTAAAAATA-GT
1 TTTTAAAAATATAT
63148803 TTTTAAAAATATAT
1 TTTTAAAAATATAT
63148817 TTTTAAA
1 TTTTAAA
63148824 TTTTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
TTTTAAAAATATAT
Found at i:63149918 original size:17 final size:17
Alignment explanation
Indices: 63149865--63149923 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
63149855 CTATAGAATT
* *
63149865 TATTAAATATCATAAAA
1 TATTAAATATTATAAAC
* *
63149882 TTTTAAAAAATTATAAAAAC
1 TATT-AAATATTAT--AAAC
63149902 TATTAAATATTATAAAC
1 TATTAAATATTATAAAC
63149919 TATTA
1 TATTA
63149924 TTAATATGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
17 12 0.36
18 7 0.21
19 8 0.24
20 6 0.18
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (17 bp):
TATTAAATATTATAAAC
Found at i:63152879 original size:2 final size:2
Alignment explanation
Indices: 63152874--63152906 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
63152864 TCTATATACC
63152874 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63152907 GAAAGGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63167135 original size:13 final size:13
Alignment explanation
Indices: 63167117--63167192 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 13
63167107 ATACGTGAAA
63167117 TATTTCAATTAAT
1 TATTTCAATTAAT
63167130 TATTTCAAATTACAT
1 TATTTC-AATTA-AT
* *
63167145 TATGTTTATATGTGAAA
1 TAT-TTCA-AT-T-AAT
63167162 TATTTCAATTAAT
1 TATTTCAATTAAT
*
63167175 CATTTCAAATTACAT
1 TATTTC-AATTA-AT
63167190 TAT
1 TAT
63167193 GTTTATATGT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
13 13 0.27
14 11 0.22
15 12 0.24
16 7 0.14
17 5 0.10
18 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (13 bp):
TATTTCAATTAAT
Found at i:63167168 original size:45 final size:45
Alignment explanation
Indices: 63167104--63167214 Score: 195
Period size: 45 Copynumber: 2.5 Consensus size: 45
63167094 TGCAAATATT
* *
63167104 TTTATACGTGAAATATTTCAATTAATTATTTCAAATTACATTATG
1 TTTATATGTGAAATATTTCAATTAATCATTTCAAATTACATTATG
63167149 TTTATATGTGAAATATTTCAATTAATCATTTCAAATTACATTATG
1 TTTATATGTGAAATATTTCAATTAATCATTTCAAATTACATTATG
*
63167194 TTTATATGTTAAATATTTCAA
1 TTTATATGTGAAATATTTCAA
63167215 AAAGACGTAC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (45 bp):
TTTATATGTGAAATATTTCAATTAATCATTTCAAATTACATTATG
Found at i:63170807 original size:7 final size:7
Alignment explanation
Indices: 63170791--63170827 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
63170781 GATGGGAATA
63170791 ATAAAAT
1 ATAAAAT
*
63170798 ATATAAT
1 ATAAAAT
63170805 ATAAAAT
1 ATAAAAT
63170812 ATAAAAT
1 ATAAAAT
*
63170819 ATCAAAT
1 ATAAAAT
63170826 AT
1 AT
63170828 TAGAATAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (7 bp):
ATAAAAT
Found at i:63170976 original size:42 final size:41
Alignment explanation
Indices: 63170913--63170997 Score: 109
Period size: 40 Copynumber: 2.0 Consensus size: 41
63170903 ATAATGATGT
*
63170913 TAAAAAAAATACATTAATAATACTACATCAATATGTACATATA
1 TAAAAAAAATACATTAATAATACTA-A-AAATATGTACATATA
* * *
63170956 TAAAATAAATACA-TGATAATATTAAAAATATGTACATATA
1 TAAAAAAAATACATTAATAATACTAAAAATATGTACATATA
63170996 TA
1 TA
63170998 GTGTTAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 16 0.42
41 1 0.03
42 9 0.24
43 12 0.32
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (41 bp):
TAAAAAAAATACATTAATAATACTAAAAATATGTACATATA
Found at i:63171467 original size:17 final size:18
Alignment explanation
Indices: 63171439--63171472 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
63171429 TTTTGATTAA
63171439 TCTCCAAAAAAACTAGCT
1 TCTCCAAAAAAACTAGCT
63171457 TCTCC-AAAAAACTAGC
1 TCTCCAAAAAAACTAGC
63171473 ATTCACAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.21
Consensus pattern (18 bp):
TCTCCAAAAAAACTAGCT
Found at i:63171723 original size:29 final size:29
Alignment explanation
Indices: 63171675--63171788 Score: 124
Period size: 29 Copynumber: 3.9 Consensus size: 29
63171665 TAGGTACAAG
* *
63171675 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGT-GTGGAAAAGGAGTGGCTAGTGGAGT
* *
63171705 TAGTGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGTGGAAAAGGAGTGGCTAGTGGAGT
* *
63171734 TGGTG-GTGACAAGGTGTGGCTAGTGGAGT
1 TGGTGTG-GAAAAGGAGTGGCTAGTGGAGT
63171763 TGGTGGTGGGAAAAGGAGT-GCTAGTG
1 TGGT-GT-GGAAAAGGAGTGGCTAGTG
63171789 AGAAAAGTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 1 0.01
29 49 0.70
30 11 0.16
31 8 0.11
32 1 0.01
ACGTcount: A:0.22, C:0.04, G:0.48, T:0.25
Consensus pattern (29 bp):
TGGTGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:63171758 original size:58 final size:60
Alignment explanation
Indices: 63171675--63171788 Score: 171
Period size: 58 Copynumber: 1.9 Consensus size: 60
63171665 TAGGTACAAG
*
63171675 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTAGT-GT-GGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGACAAGGTGTGGCTAGTGGAGTTAGTGGTGGGAAAAAGAGT-GCTAGTGGAGT
* *
63171734 TGGTGGT-GACAAGGTGTGGCTAGTGGAGTTGGTGGTGGGAAAAGGAGTGCTAGTG
1 TGGTGGTGGACAAGGTGTGGCTAGTGGAGTTAGTGGTGGGAAAAAGAGTGCTAGTG
63171789 AGAAAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
58 24 0.48
59 16 0.32
60 10 0.20
ACGTcount: A:0.22, C:0.04, G:0.48, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGACAAGGTGTGGCTAGTGGAGTTAGTGGTGGGAAAAAGAGTGCTAGTGGAGT
Found at i:63172638 original size:76 final size:75
Alignment explanation
Indices: 63172480--63172681 Score: 302
Period size: 76 Copynumber: 2.7 Consensus size: 75
63172470 TGTGAACCCA
* * *
63172480 AGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAA-TTAAAAATACCTC
63172543 AGCGTGTCCTG
65 AGCGTGTCCTG
* *
63172554 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTAACAACAGAAATTAAAAATACCTC
63172619 AGCGTGTCCTG
65 AGCGTGTCCTG
*
63172630 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTT-ACGAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAC-AACAGAAAT
63172682 CGAAGAACAG
Statistics
Matches: 118, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
74 33 0.28
75 17 0.14
76 53 0.45
77 15 0.13
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAAATACCTCA
GCGTGTCCTG
Found at i:63172767 original size:89 final size:89
Alignment explanation
Indices: 63172598--63172770 Score: 235
Period size: 89 Copynumber: 1.9 Consensus size: 89
63172588 TTTTTTTAAC
** *
63172598 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
* * *
63172663 TTTTTTTACGAACAGAAATCGAAG
66 ATTTTTGACAAACAGAAATCGAAG
*
63172687 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
63172751 -A-ATTTTTGACAAACAGAAAT
63 GATATTTTTGACAAACAGAAAT
63172771 TGAAATTACC
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
89 38 0.51
90 1 0.01
91 33 0.45
92 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (89 bp):
AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
ATTTTTGACAAACAGAAATCGAAG
Found at i:63172812 original size:73 final size:74
Alignment explanation
Indices: 63172687--63172849 Score: 247
Period size: 73 Copynumber: 2.2 Consensus size: 74
63172677 GAAATCGAAG
* *
63172687 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTCA
*
63172752 ATTTTTGACA
65 ATTTTTGAAA
** * *
63172762 AACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
1 AACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTCAA
63172826 TTTTTGAAA
66 TTTTTGAAA
63172835 AACAGAAATTGAAAA
1 AACAGAAATTGAAAA
63172850 CCAGAAATTG
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
73 58 0.73
75 22 0.28
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (74 bp):
AACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTCAA
TTTTTGAAA
Found at i:63172848 original size:14 final size:14
Alignment explanation
Indices: 63172829--63172863 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
63172819 GAGTCGATTT
63172829 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
63172843 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
63172857 TTGAAAA
1 TTGAAAA
63172864 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:63172918 original size:89 final size:87
Alignment explanation
Indices: 63172756--63172940 Score: 241
Period size: 89 Copynumber: 2.1 Consensus size: 87
63172746 GAGTTAATTT
* *
63172756 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
*
63172820 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* *
63172843 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
** *
63172908 GAG-CTAATTTTTGATGAACATAAA
64 GAGTC-AATTTTTGAAAAACAGAAA
63172932 TT-AAAACCA
1 TTGAAAACCA
63172941 CCTCAGCGTG
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
86 3 0.03
87 29 0.34
88 8 0.09
89 46 0.53
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:63172918 original size:162 final size:160
Alignment explanation
Indices: 63172519--63173010 Score: 666
Period size: 162 Copynumber: 3.0 Consensus size: 160
63172509 TGATTTTTGA
*
63172519 AAAACAGAAATTTAAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAA-TTGAAAATACCTCAGCGTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGA
* *
63172581 GTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
64 GTT-A--ATTTTTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * * *
63172646 TAGCAATATGAGTTGATTTTTTTTACGAACAGAAATCG
125 TCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTG
* *
63172684 AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
63172749 TTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
63172814 AATATGAGTCGATTTTTGAAAAACAGAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
* *
63172846 AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * **
63172911 CTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
63172976 AATATGAGTTGATTTTTGACAAACAAAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
63173008 AAA
1 AAA
63173011 TTACCTCAGC
Statistics
Matches: 294, Mismatches: 27, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
161 2 0.01
162 163 0.55
164 67 0.23
165 20 0.07
166 9 0.03
167 31 0.11
168 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (160 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGACAAACAGAAATTG
Found at i:63172978 original size:73 final size:71
Alignment explanation
Indices: 63172883--63173082 Score: 256
Period size: 73 Copynumber: 2.8 Consensus size: 71
63172873 GTGTGAGCCA
* * *
63172883 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
63172948 GTGTCCTG
66 --GTCCTG
** * * **
63172956 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
*
63173021 GTCTTG
66 GTCCTG
* **
63173027 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATG-AACATAAATTAAAA
63173083 AAACGAAAAT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
71 41 0.38
72 12 0.11
73 56 0.51
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.31
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:63173008 original size:235 final size:232
Alignment explanation
Indices: 63172692--63173223 Score: 664
Period size: 235 Copynumber: 2.3 Consensus size: 232
63172682 CGAAGAACAG
* ** *
63172692 AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
1 AAATTGAAAACACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
63172757 TGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
64 TGACAAACAAAAATTGAAATTACCTCAGC--GTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
63172822 TCGA-TTTTTGAAAAACAGAAATT--GAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCC-A
127 TCGATTTTTTGAAAAACAGAAATTAAAAAAACGA-AAATTGAAAATACCTCAGCGTGT---CCTA
* * ** *
63172883 AGGCTCAACTCACCTCTTGCAATATGAGCT-AATTTTTGATGA-ACAT
188 AGGCTCAACTCACCTCTCGCAATATGAGCTGAA--ATT-AAAACACAA
* *
63172929 AAATT-AAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAA-CACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
** * *
63172993 GACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTG
65 GACAAACAAAAATTGAAATTACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCG
*** * *
63173058 ATTTTTTTTGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
130 ATTTTTTGAAAAACAGAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCA
*
63173123 ACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAA
195 ACTCACCTCTCGCAATATGAGCTGAAATTAAAACACAA
* * *
63173161 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTT
1 AAATTGAAAACACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
63173224 GAAAAAGTAG
Statistics
Matches: 259, Mismatches: 28, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
231 2 0.01
232 60 0.23
233 66 0.25
234 17 0.07
235 91 0.35
236 10 0.04
237 13 0.05
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (232 bp):
AAATTGAAAACACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
ACAAACAAAAATTGAAATTACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
TTTTTTGAAAAACAGAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAA
CTCACCTCTCGCAATATGAGCTGAAATTAAAACACAA
Found at i:63173192 original size:72 final size:73
Alignment explanation
Indices: 63173074--63173215 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
63173064 TTTGAAACAT
* * *
63173074 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
63173139 ATGAGTTG
66 ATGAGTTG
* *
63173147 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
63173211 ATGAG
66 ATGAG
63173216 CTGATTTTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 59 0.92
73 5 0.08
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTG
Found at i:63173242 original size:160 final size:157
Alignment explanation
Indices: 63172940--63173229 Score: 415
Period size: 160 Copynumber: 1.8 Consensus size: 157
63172930 AATTAAAACC
** *
63172940 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
* ** * *
63173005 TTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAA
66 TTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTGAA
*
63173070 ACATAAATTAAAAAAACGAAAATTGAAAAT
128 AAATAAATTAAAAAAACGAAAATTGAAAAT
63173100 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAA
*
63173163 ATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAA
65 ATTGAAAATACCTCAGCGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAA
63173227 AAA
128 AAA
63173230 GTAGAAATTA
Statistics
Matches: 117, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
157 9 0.08
158 3 0.03
159 26 0.22
160 48 0.41
161 31 0.26
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (157 bp):
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
TTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
TAAATTAAAAAAACGAAAATTGAAAAT
Found at i:63173675 original size:75 final size:75
Alignment explanation
Indices: 63173369--63173710 Score: 431
Period size: 75 Copynumber: 4.5 Consensus size: 75
63173359 AGTGTGTAAT
* *
63173369 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTAAAAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT--AAAAACAGAAATTGAAAATA
*
63173434 CCTCAGCATGTGAAC
64 CCTCAGC--GTG-TC
* *
63173449 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTAAAAACAGAAATTGAAAATA
*
63173513 CCTCAACGTGTC
64 CCTCAGCGTGTC
* ** * * * *
63173525 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACC
63173587 TCAGCGTGTC
66 TCAGCGTGTC
** * *
63173597 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACC
63173662 TCAGCGTGTC
66 TCAGCGTGTC
*
63173672 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
63173711 GAAAAACAAA
Statistics
Matches: 236, Mismatches: 20, Indels: 17
0.86 0.07 0.06
Matches are distributed among these distances:
72 67 0.28
75 70 0.30
76 1 0.00
77 34 0.14
79 55 0.23
80 1 0.00
81 8 0.03
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACC
TCAGCGTGTC
Found at i:63173686 original size:147 final size:149
Alignment explanation
Indices: 63173369--63173727 Score: 426
Period size: 147 Copynumber: 2.4 Consensus size: 149
63173359 AGTGTGTAAT
* * * * *
63173369 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTAAAAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGA----TTTT-GAAAAACAGAAATTGAAAATA
63173434 CCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAAC
61 CCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTTGAAAAC
63173499 AGAAATTGAAAATACCTCAACGTGTC
124 AGAAATTGAAAATACCTCAACGTGTC
* ** * *
63173525 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTG-ATTTTGAAAAACAGAAATTGAAAATACCTC
* ** *
63173589 AGC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTT-AACAACAGAA
65 AGCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAA-AACAGAA
* *
63173650 ATTGAAATTACCTCAGCGTGTC
128 ATTGAAAATACCTCAACGTGTC
*
63173672 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACA-AAATT-AAAA
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGATTTTGAAAAACAGAAATTGAAAA
63173728 GGCTTAACTC
Statistics
Matches: 179, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
145 3 0.02
146 13 0.07
147 70 0.39
148 2 0.01
149 33 0.18
151 25 0.14
153 4 0.02
156 28 0.16
157 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (149 bp):
CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGATTTTGAAAAACAGAAATTGAAAATACCTCA
GCAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATT
GAAAATACCTCAACGTGTC
Found at i:63173719 original size:75 final size:74
Alignment explanation
Indices: 63173369--63173716 Score: 378
Period size: 72 Copynumber: 4.6 Consensus size: 74
63173359 AGTGTGTAAT
* *
63173369 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTAAAAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTAAAAAAACAGAAATTGAAAATA
*
63173434 CCTCAGCATGTGAAC
63 CCTCAGC--GTG-TC
* ***
63173449 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTAAAAAAACAGAAATTGAAAATA
*
63173513 CCTCAACGTGTC
63 CCTCAGCGTGTC
* ** * * * *
63173525 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTT--GAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAACAGAAATTGAAAATACCT
63173588 CAGCGTGTC
66 CAGCGTGTC
** ** * *
63173597 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAAAACAGAAATTGAAAATACC
63173662 TCAGCGTGTC
65 TCAGCGTGTC
* *
63173672 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAA
63173717 CAAAATTAAA
Statistics
Matches: 238, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
72 63 0.26
73 4 0.02
74 10 0.04
75 62 0.26
76 1 0.00
77 34 0.14
79 63 0.26
80 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:63173876 original size:70 final size:70
Alignment explanation
Indices: 63173727--63173901 Score: 196
Period size: 70 Copynumber: 2.5 Consensus size: 70
63173717 CAAAATTAAA
* * * * **
63173727 AGGCTTAACTCACCTT-TCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGT
1 AGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGT
63173790 GCCCCG
65 GCCCCG
* *
63173796 AGACTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA-AAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
63173860 GTCTTG
65 GCCCCG
63173866 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
63173902 CCTTGGAAAG
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
68 3 0.03
69 23 0.26
70 60 0.67
71 4 0.04
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:63174738 original size:45 final size:40
Alignment explanation
Indices: 63174677--63174783 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
63174667 GTTTCATTAG
*
63174677 GACGCCC-TCTCGGGTTTTCATCCTAATCTTTTTGTACTAATCAA
1 GACGCCCTTTTCGGGTTTTCATCCTAATCTTTTT-T--T--TCAA
** * *
63174721 GACGCCCTTTTCGGGTTTTCGCCCTGATCTTTTTTTTTAA
1 GACGCCCTTTTCGGGTTTTCATCCTAATCTTTTTTTTCAA
*
63174761 GATGCCCTTTTCGGGTTTTCATC
1 GACGCCCTTTTCGGGTTTTCATC
63174784 TTAAGCATAA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
40 23 0.43
42 1 0.02
44 8 0.15
45 22 0.41
ACGTcount: A:0.14, C:0.26, G:0.17, T:0.43
Consensus pattern (40 bp):
GACGCCCTTTTCGGGTTTTCATCCTAATCTTTTTTTTCAA
Found at i:63182219 original size:16 final size:15
Alignment explanation
Indices: 63182198--63182245 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
63182188 GATGTGAATA
63182198 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
63182214 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
63182229 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
63182245 A
1 A
63182246 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:63182228 original size:8 final size:8
Alignment explanation
Indices: 63182194--63182245 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
63182184 CAATGATGTG
*
63182194 AATAATAA
1 AATATTAA
63182202 AATATATAA
1 AATAT-TAA
63182211 AATA-TAA
1 AATATTAA
63182218 AATATTAA
1 AATATTAA
*
63182226 AATATCAA
1 AATATTAA
*
63182234 AATATTAG
1 AATATTAA
63182242 AATA
1 AATA
63182246 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:63182245 original size:24 final size:24
Alignment explanation
Indices: 63182193--63182249 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
63182183 ACAATGATGT
*
63182193 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
63182217 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
63182241 GAATAATAA
1 GAATAATAA
63182250 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:63182456 original size:22 final size:24
Alignment explanation
Indices: 63182393--63182457 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
63182383 CGTGATAATA
*
63182393 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
63182418 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
63182441 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
63182458 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:63182507 original size:25 final size:25
Alignment explanation
Indices: 63182479--63182610 Score: 98
Period size: 25 Copynumber: 5.6 Consensus size: 25
63182469 GAAAAAAAAT
63182479 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
63182504 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
** * *
63182529 ATATATACGTAATATAAAATTTAA-
1 ATATATAAATAATATAATATTAAAG
** *
63182553 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
63182575 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
63182598 AAATAT-AATAATA
1 ATATATAAATAATA
63182611 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 24 0.29
24 6 0.07
25 38 0.45
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:63182531 original size:50 final size:46
Alignment explanation
Indices: 63182474--63182605 Score: 124
Period size: 50 Copynumber: 2.8 Consensus size: 46
63182464 ATGTAGAAAA
63182474 AAAATATATATAAATAATATAATATTAAAGATATATAAATAAAATAGTAT
1 AAAATATATATAAATAATATAATATT-AAGA-ATATAAATAAAATA-T-T
** * ** *
63182524 AAAATATATATACGTAATATAAAATTTAA-AATATACCTAATATATT
1 AAAATATATATAAATAATATAATA-TTAAGAATATAAATAAAATATT
* *
63182570 AAAAGA-ATATATATAATATAATATTAAGAAATATAA
1 AAAATATATATAAATAATATAATATTAAG-AATATAA
63182606 TAATAACAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
44 4 0.06
45 14 0.21
46 12 0.18
47 1 0.01
48 11 0.16
49 1 0.01
50 23 0.34
51 2 0.03
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (46 bp):
AAAATATATATAAATAATATAATATTAAGAATATAAATAAAATATT
Found at i:63183220 original size:30 final size:30
Alignment explanation
Indices: 63183115--63183282 Score: 215
Period size: 30 Copynumber: 5.8 Consensus size: 30
63183105 TAGGTACAAG
* * *
63183115 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
63183145 TAGTGGT----AAA-AGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
63183170 TGGTGGTGG--AAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
63183198 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
63183228 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
63183258 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGT
63183283 TGAGAAAAGT
Statistics
Matches: 123, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
25 20 0.16
26 2 0.02
27 3 0.02
28 23 0.19
30 75 0.61
ACGTcount: A:0.22, C:0.04, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:63183268 original size:60 final size:60
Alignment explanation
Indices: 63183115--63183282 Score: 260
Period size: 60 Copynumber: 2.9 Consensus size: 60
63183105 TAGGTACAAG
* *
63183115 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTAGTGGT----AAA-AGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
63183170 TGGTGGTGG-AAA-GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
63183228 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
63183283 TGAGAAAAGT
Statistics
Matches: 103, Mismatches: 3, Indels: 9
0.90 0.03 0.08
Matches are distributed among these distances:
53 22 0.21
54 2 0.02
55 9 0.09
57 3 0.03
58 24 0.23
59 3 0.03
60 40 0.39
ACGTcount: A:0.22, C:0.04, G:0.48, T:0.27
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:63185218 original size:13 final size:13
Alignment explanation
Indices: 63185202--63185252 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
63185192 TTTAAGCCAA
63185202 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
63185215 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* * *
63185228 ACTTTTCCACAGG
1 ACTTTTCAAAAGC
63185241 ACTTTTCAAAAG
1 ACTTTTCAAAAG
63185253 TAATGAAGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.29
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:63187500 original size:31 final size:31
Alignment explanation
Indices: 63187465--63187527 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
63187455 TTAATAACCT
*
63187465 AGTGACTTAAATAAAAACTTTT-GAATAGTTC
1 AGTGACTTAAATAAAAA-TTTTAAAATAGTTC
*
63187496 AGTGACTTAAATGAAAATTTTAAAATAGTTC
1 AGTGACTTAAATAAAAATTTTAAAATAGTTC
63187527 A
1 A
63187528 ATGGCCAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 4 0.14
31 25 0.86
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (31 bp):
AGTGACTTAAATAAAAATTTTAAAATAGTTC
Found at i:63200395 original size:10 final size:9
Alignment explanation
Indices: 63200278--63200418 Score: 70
Period size: 9 Copynumber: 15.1 Consensus size: 9
63200268 TTAAAATCAT
63200278 TAAAAATTA
1 TAAAAATTA
63200287 TAAAAAAGATTA
1 T--AAAA-ATTA
** *
63200299 TAGGAATCA
1 TAAAAATTA
*
63200308 TACAAATTA
1 TAAAAATTA
63200317 TAAAAATTA
1 TAAAAATTA
* *
63200326 -CAAAATAA
1 TAAAAATTA
*
63200334 TTAAAA-TA
1 TAAAAATTA
63200342 CTAAAAATTA
1 -TAAAAATTA
* *
63200352 AAAAAACTA
1 TAAAAATTA
* *
63200361 TAAAAGTGA
1 TAAAAATTA
*
63200370 AAAAAATTA
1 TAAAAATTA
63200379 TAAAAATTA
1 TAAAAATTA
* *
63200388 TTATAAATGA
1 -TAAAAATTA
*
63200398 CTCAAAAACTA
1 -T-AAAAATTA
63200409 TAAAAATTA
1 TAAAAATTA
63200418 T
1 T
63200419 TATAATAAAA
Statistics
Matches: 95, Mismatches: 29, Indels: 16
0.68 0.21 0.11
Matches are distributed among these distances:
8 7 0.07
9 61 0.64
10 13 0.14
11 9 0.09
12 5 0.05
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (9 bp):
TAAAAATTA
Found at i:63200844 original size:9 final size:9
Alignment explanation
Indices: 63200832--63200922 Score: 62
Period size: 9 Copynumber: 10.1 Consensus size: 9
63200822 TTTTAGTTTG
63200832 TTTTATAAT
1 TTTTATAAT
*
63200841 TTTTATGAT
1 TTTTATAAT
*
63200850 TTTTATATT
1 TTTTATAAT
* *
63200859 ATTTTGTAAA
1 -TTTTATAAT
*
63200869 TTTTATTAT
1 TTTTATAAT
*
63200878 TTTTAAATAT
1 TTTTATA-AT
63200888 TTTTCATAA-
1 TTTT-ATAAT
63200897 TTTT-TAAT
1 TTTTATAAT
*
63200905 TTTT-TTAT
1 TTTTATAAT
*
63200913 TTTTGTAAT
1 TTTTATAAT
63200922 T
1 T
63200923 CATTTAGTTT
Statistics
Matches: 63, Mismatches: 14, Indels: 10
0.72 0.16 0.11
Matches are distributed among these distances:
7 3 0.05
8 11 0.17
9 34 0.54
10 13 0.21
11 2 0.03
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.68
Consensus pattern (9 bp):
TTTTATAAT
Found at i:63200852 original size:28 final size:27
Alignment explanation
Indices: 63200813--63200913 Score: 91
Period size: 28 Copynumber: 3.7 Consensus size: 27
63200803 AAAAAAATGT
*
63200813 TTTTTATATTTTTAGT-TTGTTTTATAA
1 TTTTTATATTTTTA-TATTATTTTATAA
*
63200840 TTTTTATGATTTTTATATTATTTTGTAA
1 TTTTTAT-ATTTTTATATTATTTTATAA
* *
63200868 ATTTTATTATTTTTAAATATT-TTTCATAA
1 TTTTTA-TATTTTT--ATATTATTTTATAA
*
63200897 TTTTTA-ATTTTTTTATT
1 TTTTTATATTTTTATATT
63200914 TTTGTAATTC
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
25 4 0.06
27 14 0.23
28 27 0.44
29 12 0.19
30 5 0.08
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.69
Consensus pattern (27 bp):
TTTTTATATTTTTATATTATTTTATAA
Found at i:63203381 original size:30 final size:30
Alignment explanation
Indices: 63203345--63203445 Score: 175
Period size: 30 Copynumber: 3.4 Consensus size: 30
63203335 ACTTTTCTCA
63203345 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
63203375 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
63203405 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
63203435 ACTAGCCACAC
1 ACTAGCCACAC
63203446 TTGCTCCATT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.28, C:0.50, G:0.04, T:0.19
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:63203453 original size:30 final size:29
Alignment explanation
Indices: 63203345--63203491 Score: 170
Period size: 30 Copynumber: 4.9 Consensus size: 29
63203335 ACTTTTCTCA
*
63203345 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
* *
63203375 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCAC-ACTTCTCCACCACCAACTCC
*
63203405 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
** *
63203435 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTT-CTCCACCACCAACTCC
*
63203465 ACTAACCACACTTGCTCCACCA-CAACT
1 ACTAGCCACACTT-CTCCACCACCAACT
63203492 TGTACCTACA
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
29 7 0.07
30 95 0.93
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (29 bp):
ACTAGCCACACTTCTCCACCACCAACTCC
Found at i:63204096 original size:25 final size:25
Alignment explanation
Indices: 63204068--63204136 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
63204058 CTATATTACG
63204068 TATATATATTATATTATTTTATGTA
1 TATATATATTATATTATTTTATGTA
* * *
63204093 TATATCT-TTAATATTATATTATTTA
1 TATATATATT-ATATTATTTTATGTA
63204118 TATATATA-TATATT-TTTTA
1 TATATATATTATATTATTTTA
63204137 CATGTTATCT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
23 4 0.11
24 7 0.19
25 26 0.70
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (25 bp):
TATATATATTATATTATTTTATGTA
Found at i:63204130 original size:35 final size:35
Alignment explanation
Indices: 63204073--63204157 Score: 90
Period size: 35 Copynumber: 2.6 Consensus size: 35
63204063 TTACGTATAT
*
63204073 ATATTATATTA-TT-T-TATGTATATA-TCTTTA-
1 ATATTATATTATTTATATATATATATATTCTTTAC
*
63204103 ATATTATATTATTTATATATATATATATTTTTTAC
1 ATATTATATTATTTATATATATATATATTCTTTAC
* * *
63204138 ATGTTATCTTATGTATATAT
1 ATATTATATTATTTATATAT
63204158 CTTAACTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
30 11 0.24
31 2 0.04
32 1 0.02
33 9 0.20
34 5 0.11
35 17 0.38
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (35 bp):
ATATTATATTATTTATATATATATATATTCTTTAC
Found at i:63204172 original size:22 final size:24
Alignment explanation
Indices: 63204146--63204204 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
63204136 ACATGTTATC
63204146 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
63204168 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
63204193 TTATGTACATAT
1 TTATGTATATAT
63204205 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:63204194 original size:25 final size:25
Alignment explanation
Indices: 63204162--63204210 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
63204152 ATATATCTTA
**
63204162 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
63204187 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
63204211 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:63204389 original size:16 final size:15
Alignment explanation
Indices: 63204365--63204412 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
63204355 TAATTATTAT
*
63204365 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
63204381 TATTTTAATATTTTA
1 TATTTTAATATTTTA
63204396 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
63204412 T
1 T
63204413 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:63204400 original size:7 final size:8
Alignment explanation
Indices: 63204365--63204416 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
63204355 TAATTATTAT
*
63204365 TATTCTAA
1 TATTTTAA
*
63204373 TATTTTGA
1 TATTTTAA
63204381 TATTTTAA
1 TATTTTAA
63204389 TATTTT-A
1 TATTTTAA
63204396 TATTTTATA
1 TATTTTA-A
*
63204405 TATTTTAT
1 TATTTTAA
63204413 TATT
1 TATT
63204417 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:63206031 original size:11 final size:12
Alignment explanation
Indices: 63206007--63206038 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
63205997 TGTATTAAAT
63206007 TTTTTTATATTA
1 TTTTTTATATTA
63206019 TTTTTTATA-TA
1 TTTTTTATATTA
63206030 TTTTTTATA
1 TTTTTTATA
63206039 AAAAATATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTTATATTA
Found at i:63206231 original size:11 final size:11
Alignment explanation
Indices: 63206217--63206294 Score: 61
Period size: 11 Copynumber: 7.1 Consensus size: 11
63206207 ATATACAACC
*
63206217 AATAATAGTAA
1 AATAATAGCAA
63206228 AATAATAGCAA
1 AATAATAGCAA
*
63206239 CATAATAGCAA
1 AATAATAGCAA
** *
63206250 AATGGTAACAA
1 AATAATAGCAA
*
63206261 AATAGTGAG-AA
1 AATAAT-AGCAA
*
63206272 AACAATAAG-AA
1 AATAAT-AGCAA
63206283 AATAATAGCAA
1 AATAATAGCAA
63206294 A
1 A
63206295 CCTTTCCACT
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
10 2 0.04
11 50 0.94
12 1 0.02
ACGTcount: A:0.62, C:0.08, G:0.13, T:0.18
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:63206703 original size:41 final size:41
Alignment explanation
Indices: 63206658--63206817 Score: 214
Period size: 41 Copynumber: 3.9 Consensus size: 41
63206648 TGGCGCTAAT
* * * *
63206658 AGAAAAAAGCCGCAATAGGTAAAGCAGTAGCGGCGTTTATG
1 AGAAAAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTTATG
* * *
63206699 AGAAAAACGCCGCAAAAGGTCAAGCAATAACAACGTTTATG
1 AGAAAAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTTATG
* * *
63206740 AGAAAAACGCCGCAAAAGGTCAAGCATTAGCAGCGCTTATG
1 AGAAAAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTTATG
*
63206781 AGAAAAACGCCGCAAAAGGT-AAGCAACAGCAGCGTTT
1 AGAAAAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTT
63206818 TAAAAAACAC
Statistics
Matches: 105, Mismatches: 14, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
40 14 0.13
41 91 0.87
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.14
Consensus pattern (41 bp):
AGAAAAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTTATG
Found at i:63206961 original size:14 final size:14
Alignment explanation
Indices: 63206924--63206953 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63206914 AATCTTTTTT
63206924 TCCCCAAATCAAAA
1 TCCCCAAATCAAAA
63206938 TCCCCAAATCAAAA
1 TCCCCAAATCAAAA
63206952 TC
1 TC
63206954 TCGAAATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
TCCCCAAATCAAAA
Found at i:63207077 original size:25 final size:25
Alignment explanation
Indices: 63207015--63207082 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
63207005 TCAACTGTCC
* *
63207015 TCTCTGTTGCATCGTCGTCGACACT
1 TCTCTGTCGCATCGCCGTCGACACT
* * *
63207040 TCTCTGCCACATCGCCGTTGACA-T
1 TCTCTGTCGCATCGCCGTCGACACT
*
63207064 TCCTCTGTCGCATCACCGT
1 T-CTCTGTCGCATCGCCGT
63207083 GTAAGTTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 2 0.06
25 32 0.94
ACGTcount: A:0.13, C:0.37, G:0.18, T:0.32
Consensus pattern (25 bp):
TCTCTGTCGCATCGCCGTCGACACT
Found at i:63207748 original size:28 final size:28
Alignment explanation
Indices: 63207690--63207748 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
63207680 ATATTGGTAC
*
63207690 TTGCATTTAACTTGGAAAATATAAAATT
1 TTGCATTTAACTTGGAAAATATAAAAAT
63207718 TTGCATTTAACTTGGAAAATATAAAAAT
1 TTGCATTTAACTTGGAAAATATAAAAAT
63207746 TTG
1 TTG
63207749 GAGATTTGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (28 bp):
TTGCATTTAACTTGGAAAATATAAAAAT
Found at i:63208902 original size:8 final size:8
Alignment explanation
Indices: 63208889--63208915 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
63208879 TTTATGCACC
63208889 TACCAAAA
1 TACCAAAA
63208897 TACCAAAA
1 TACCAAAA
63208905 TACCAAAA
1 TACCAAAA
63208913 TAC
1 TAC
63208916 AAGCCAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (8 bp):
TACCAAAA
Found at i:63209772 original size:21 final size:21
Alignment explanation
Indices: 63209748--63209794 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
63209738 TTCGATTTTG
*
63209748 TTTCTCTTTATTT-TTTTCTCT
1 TTTCTCTATATTTATTTTCT-T
**
63209769 TTTCGGTATATTTATTTTCTT
1 TTTCTCTATATTTATTTTCTT
63209790 TTTCT
1 TTTCT
63209795 ATTTTCTTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72
Consensus pattern (21 bp):
TTTCTCTATATTTATTTTCTT
Found at i:63209775 original size:94 final size:94
Alignment explanation
Indices: 63209673--63209857 Score: 354
Period size: 95 Copynumber: 2.0 Consensus size: 94
63209663 TCAACAACCC
63209673 CTTTTCGGTATATTTATTTTCTTTTTCTATTTT-TTCTCTTTATTTTTTTCTTCTAACTATTTGT
1 CTTTTCGGTATATTTATTTTCTTTTTCTATTTTCTTCTCTTTATTTTTTTCTTCTAACTATTTGT
63209737 GTTCGATTTTGTTTCTCTTTATTTTTTTCT
66 GTTCGATTTTGTTTCT-TTTATTTTTTTCT
63209767 CTTTTCGGTATATTTATTTTCTTTTTCTATTTTCTTCTCTTTATTTTTTTCTTCTAACTATTTGT
1 CTTTTCGGTATATTTATTTTCTTTTTCTATTTTCTTCTCTTTATTTTTTTCTTCTAACTATTTGT
63209832 GTTCGATTTTGTTTCTTTTATTTTTT
66 GTTCGATTTTGTTTCTTTTATTTTTT
63209858 AATACTATAT
Statistics
Matches: 90, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
94 43 0.48
95 47 0.52
ACGTcount: A:0.11, C:0.14, G:0.06, T:0.69
Consensus pattern (94 bp):
CTTTTCGGTATATTTATTTTCTTTTTCTATTTTCTTCTCTTTATTTTTTTCTTCTAACTATTTGT
GTTCGATTTTGTTTCTTTTATTTTTTTCT
Found at i:63211662 original size:110 final size:109
Alignment explanation
Indices: 63211470--63211866 Score: 605
Period size: 109 Copynumber: 3.6 Consensus size: 109
63211460 CTTTTTTCCT
*
63211470 AAATAAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
1 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
*
63211535 TTTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* * *
63211579 AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATACCCTAAGGCGCTGGGTGTCGAT
1 AAATAAGGCAATATTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
63211644 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
65 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* *
63211689 AAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
1 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
* * * **
63211754 TTTCTCATTCAACCAAATGGCTAAATATCCTTCTAAAAATTTCG
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* ** ** * * *
63211798 AAGTAAGATAATATTTTGCGTTTGGAAATTTAAGGAAACATGCCCTAATGTGCTGGGTTTCGATT
1 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
63211863 TTTC
66 TTTC
63211867 CATTTGACCA
Statistics
Matches: 264, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
109 158 0.60
110 106 0.40
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (109 bp):
AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
Found at i:63211944 original size:21 final size:21
Alignment explanation
Indices: 63211914--63211970 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
63211904 TCCATGTCAT
63211914 AAGAGTTGAACAAAAGCTCAA
1 AAGAGTTGAACAAAAGCTCAA
* * **
63211935 AAGAGCTGAACAGAAGCTCCT
1 AAGAGTTGAACAAAAGCTCAA
63211956 AAGAGTTGAACAAAA
1 AAGAGTTGAACAAAA
63211971 AGTAAAACAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.21, T:0.14
Consensus pattern (21 bp):
AAGAGTTGAACAAAAGCTCAA
Found at i:63213616 original size:43 final size:42
Alignment explanation
Indices: 63213563--63213800 Score: 248
Period size: 43 Copynumber: 5.6 Consensus size: 42
63213553 TAACATGACT
63213563 TTTAGCGGCGTTTTTGGGAAAAGCATCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTTTGGGAAAAGC-TCGCTAAAGGTCATGTTC
* * *
63213606 TTTAGTGGCGTTTGTTGGG-AAAGCGCAGCTAAAGGTCATGTTG
1 TTTAGCGGCGTTT-TTGGGAAAAGCTC-GCTAAAGGTCATGTTC
* * * *
63213649 TTTAGTGGCGTTTGTGGGGAAAGCATCGCTAAAGGCCATGTTC
1 TTTAGCGGCGTTTTTGGGAAAAGC-TCGCTAAAGGTCATGTTC
* *
63213692 TTTAGCAGCGTTTGTGGGGAAAACGC-CGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTT-TTGGGAAAA-GCTCGCTAAAGGTCATGTTC
* ** * * *
63213735 TATAGCGGTATTTTTGGGGAAAGCGCCGCTAAAGGTCACGTTC
1 TTTAGCGGCGTTTTTGGGAAAAGC-TCGCTAAAGGTCATGTTC
*
63213778 -TTAGCGGCATTTTTGGGAAAAGC
1 TTTAGCGGCGTTTTTGGGAAAAGC
63213801 GCTATTAAAT
Statistics
Matches: 164, Mismatches: 23, Indels: 17
0.80 0.11 0.08
Matches are distributed among these distances:
41 2 0.01
42 32 0.20
43 116 0.71
44 12 0.07
45 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTGGGAAAAGCTCGCTAAAGGTCATGTTC
Found at i:63213712 original size:86 final size:86
Alignment explanation
Indices: 63213563--63213820 Score: 304
Period size: 86 Copynumber: 3.0 Consensus size: 86
63213553 TAACATGACT
* * *
63213563 TTTAGCGGCGTTTTTGGGAAAAGCATCGCTAAAGGTCATGTTCTTTAGTGGCGTTTGTTGGGAAA
1 TTTAGCGGCGTTTTTGGGGAAAGCATCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGGAAA
*
63213628 GCGCAGCTAAAGGTCATGTTG
66 GCGCAGCTAAAGGTCATGTTC
* * * *
63213649 TTTAGTGGCGTTTGTGGGGAAAGCATCGCTAAAGGCCATGTTCTTTAGCAGCGTTTGTGGGGAAA
1 TTTAGCGGCGTTTTTGGGGAAAGCATCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGGAAA
* *
63213714 ACGCCGCTAAAGGTCATGTTC
66 GCGCAGCTAAAGGTCATGTTC
* ** ** * * * *
63213735 TATAGCGGTATTTTTGGGGAAAGCGCCGCTAAAGGTCACGTTC-TTAGCGGCATTTTTGGGAAAA
1 TTTAGCGGCGTTTTTGGGGAAAGCATCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGGAAA
* *
63213799 GCGCTA-TTAAATGTCATGTTC
66 GCGC-AGCTAAAGGTCATGTTC
63213820 T
1 T
63213821 AAAAAAAGCC
Statistics
Matches: 144, Mismatches: 27, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
85 34 0.24
86 110 0.76
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (86 bp):
TTTAGCGGCGTTTTTGGGGAAAGCATCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGGAAA
GCGCAGCTAAAGGTCATGTTC
Found at i:63227162 original size:12 final size:11
Alignment explanation
Indices: 63227145--63227179 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
63227135 AACAAATCCT
63227145 CTCTCATATTTC
1 CTCTCA-ATTTC
63227157 CTCTCAA-TTC
1 CTCTCAATTTC
63227167 CTCTCAATTTC
1 CTCTCAATTTC
63227178 CT
1 CT
63227180 TCCAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:63227193 original size:22 final size:22
Alignment explanation
Indices: 63227162--63227217 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
63227152 ATTTCCTCTC
63227162 AATTCCTCTCAATTTCCTTCCAA
1 AATT-CTCTCAATTTCCTTCCAA
*
63227185 AATTTTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
63227207 AATTCTCTCAA
1 AATTCTCTCAA
63227218 ATCTATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 27 0.87
23 4 0.13
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.41
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:63227247 original size:51 final size:51
Alignment explanation
Indices: 63227190--63227304 Score: 203
Period size: 51 Copynumber: 2.3 Consensus size: 51
63227180 TCCAAAATTT
* * *
63227190 TCTCAATTTCCTTCCAAAATTCTCTCAAATCTATATTTAATTTTAATTTCC
1 TCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTCC
63227241 TCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTCC
1 TCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTCC
63227292 TCTCAATTTCCTT
1 TCTCAATTTCCTT
63227305 TTTTAAAATA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.46
Consensus pattern (51 bp):
TCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTCC
Found at i:63228432 original size:7 final size:7
Alignment explanation
Indices: 63228422--63228446 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63228412 ATTCGATTGA
63228422 TATTTAG
1 TATTTAG
63228429 TATTTAG
1 TATTTAG
63228436 TATTTAG
1 TATTTAG
63228443 TATT
1 TATT
63228447 ATGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:63229591 original size:43 final size:45
Alignment explanation
Indices: 63229543--63229628 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 45
63229533 ATATTTTGAA
* *
63229543 TATTTTGATATTGTTTTATGTAA-AAAATAGAAATTT-TTTGAGT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGAGT
*
63229586 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGA
63229629 TGTAATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 21 0.55
44 12 0.32
45 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGAGT
Found at i:63229783 original size:45 final size:45
Alignment explanation
Indices: 63229724--63230326 Score: 627
Period size: 45 Copynumber: 12.8 Consensus size: 45
63229714 AACCCTAGCC
*
63229724 TAATTAAAAACCCTAAACCCTTAACTTAAAAGCCCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
* *
63229769 TAATTAAAATCCCTAAACCCTTAACTTAAAAACTCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
*
63229814 TAATTAAAAACCCTAAACCCTTAACTTAAAAACTCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
* *
63229859 TAATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAGCCTAATT
1 TAATTAAAAACCCTAAACC---CTTAACTTAAAAACCCTAACCTAATT
*
63229905 TAATTAAAAACCCTAAAACCTTAACTTAAAAACCCTAACTCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTTAAAAA--C---C-CTAACCTAATT
63229956 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
* * *
63230001 TAATTAAAAACCCT-AGCCTAATTTAA-TTAAAAACCCTAAACCCTTAACT
1 TAATTAAAAACCCTAAACC---CTTAACTTAAAAACCCT-AA-CC-TAATT
* **
63230050 TAA--AAACTCTAACCCT-AACCTAATTTAA-TTAAAAACCCTGGCCTAATT
1 TAATTAAA----AACCCTAAACC---CTTAACTTAAAAACCCTAACCTAATT
63230098 TAATT-AAAACCCTAAACCCTTAACTTAAAAACTCTAACCCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTT--AAA----AACCCTAACCTAATT
63230148 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
* * *
63230193 TAATTAAAAACTCT-AACCTAATTTAA-TTAAAAACCCTAGCCTAATT
1 TAATTAAAAACCCTAAACC---CTTAACTTAAAAACCCTAACCTAATT
63230239 TAATTAAAAACCCTAAACCCTTAA-TTAAAAACTCTAACCCTAACCTAATT
1 TAATTAAAAACCCTAAACCCTTAACTT--AAA----AACCCTAACCTAATT
* *
63230289 TAATTAAAAACTCTAAACCTTTAACTTAAAAACCCTAA
1 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAA
63230327 ACCCTTAACT
Statistics
Matches: 486, Mismatches: 29, Indels: 86
0.81 0.05 0.14
Matches are distributed among these distances:
43 4 0.01
44 23 0.05
45 174 0.36
46 86 0.18
47 25 0.05
48 9 0.02
49 18 0.04
50 55 0.11
51 92 0.19
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.29
Consensus pattern (45 bp):
TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATT
Found at i:63229865 original size:28 final size:23
Alignment explanation
Indices: 63229696--63230326 Score: 482
Period size: 23 Copynumber: 27.1 Consensus size: 23
63229686 CCCAAAATCA
63229696 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63229719 TAGCC-----TAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
* *
63229737 TAAACC---CTTAACTTAAAAGCCC
1 T-AACCTAATTTAA-TTAAAAACCC
*
63229759 TAACCTAATTTAATTAAAATCCC
1 TAACCTAATTTAATTAAAAACCC
* *
63229782 TAAACC---CTTAACTTAAAAACTC
1 T-AACCTAATTTAA-TTAAAAACCC
63229804 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
* *
63229827 TAAACC---CTTAACTTAAAAACTC
1 T-AACCTAATTTAA-TTAAAAACCC
63229849 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
63229872 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63229895 TAGCCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
* *
63229918 TAAAACCTTAACTTAA--AAACCCTAACTC
1 T--AACC-TAATTTAATTAAA----AACCC
63229946 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63229969 TAAACC---CTTAACTTAAAAACCC
1 T-AACCTAATTTAA-TTAAAAACCC
63229991 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63230014 TAGCCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63230037 TAAACCCTTAACTTAA--AAACTCTAACCC
1 T-AA-CC-TAATTTAATTAAA----AACCC
63230065 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
**
63230088 TGGCCTAATTTAATT-AAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63230110 TAAACCCTTAACTTAA--AAACTCTAACCC
1 T-AA-CC-TAATTTAATTAAA----AACCC
63230138 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63230161 TAAACC---CTTAACTTAAAAACCC
1 T-AACCTAATTTAA-TTAAAAACCC
*
63230183 TAACCTAATTTAATTAAAAACTC
1 TAACCTAATTTAATTAAAAACCC
63230206 TAACCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
*
63230229 TAGCCTAATTTAATTAAAAACCC
1 TAACCTAATTTAATTAAAAACCC
63230252 TAAACCCTTAA-TTAA--AAACTCTAACCC
1 T-AA-CC-TAATTTAATTAAA----AACCC
*
63230279 TAACCTAATTTAATTAAAAACTC
1 TAACCTAATTTAATTAAAAACCC
63230302 TAAACC---TTTAACTTAAAAACCC
1 T-AACCTAATTTAA-TTAAAAACCC
63230324 TAA
1 TAA
63230327 ACCCTTAACT
Statistics
Matches: 501, Mismatches: 40, Indels: 136
0.74 0.06 0.20
Matches are distributed among these distances:
18 14 0.03
19 3 0.01
21 46 0.09
22 69 0.14
23 203 0.41
24 55 0.11
25 45 0.09
26 27 0.05
27 22 0.04
28 17 0.03
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (23 bp):
TAACCTAATTTAATTAAAAACCC
Found at i:63230003 original size:119 final size:115
Alignment explanation
Indices: 63229858--63230253 Score: 491
Period size: 119 Copynumber: 3.3 Consensus size: 115
63229848 CTAACCTAAT
*
63229858 TTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAAA
1 TTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAAC
63229923 CCTTAACTTAAAAACCCTAACTCTAACCTAATTTAATTAAAAACCCTAAACCC
66 CCTTAACTTAAAAA-CCTAAC-CTAACCTAATTTAATTAAAAACCCT-AACCC
63229976 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAA
1 TTAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAA
** *
63230041 CCCTTAACTTAAAAACTCTAACCCTAACCTAATTTAATTAAAAACCCTGGCCTAAT
65 CCCTTAACTTAAAAAC-CTAA-CCTAACCTAATTTAATTAAAAACCCTAACC---C
* *
63230097 TTAATT-AAAACCCTAAACCCTTAACTTAA--AAACTCTAACCCTAACCTAATTTAATTAAAAAC
1 TTAATTAAAAACCCT-AA-CC-TAATTTAATTAAA----AACCCTAGCCTAATTTAATTAAAAAC
* *
63230159 CCTAAACCCTTAACTTAAAAA-C---CCTAACCTAATTTAATTAAAAACTCTAACCTAAT
59 CCTAAACCCTTAACTTAAAAACCTAACCTAACCTAATTTAATTAAAAACCCTAACC---C
*
63230215 TTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTA
1 TTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
63230254 AACCCTTAAT
Statistics
Matches: 251, Mismatches: 11, Indels: 36
0.84 0.04 0.12
Matches are distributed among these distances:
114 7 0.03
116 7 0.03
117 2 0.01
118 48 0.19
119 119 0.47
120 8 0.03
121 6 0.02
122 8 0.03
124 46 0.18
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.29
Consensus pattern (115 bp):
TTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAAC
CCTTAACTTAAAAACCTAACCTAACCTAATTTAATTAAAAACCCTAACCC
Found at i:63230122 original size:73 final size:74
Alignment explanation
Indices: 63229986--63230361 Score: 494
Period size: 73 Copynumber: 5.2 Consensus size: 74
63229976 TTAACTTAAA
63229986 AACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTT
1 AACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTT
63230051 AAAAACTCT
66 AAAAACTCT
*
63230060 AACCCTAACCTAATTTAATTAAAAACCCTGGCCTAATTTAATT-AAAACCCTAAACCCTTAACTT
1 AACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTT
63230124 AAAAACTCT
66 AAAAACTCT
* * *
63230133 AACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTTAAAAACCCT-AA-CC-TAAT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AGCCTAATTTAA-TTAAAAACCCTAAACCCTTAAC
63230192 TTAATTAAA----
64 TTAA--AAACTCT
*
63230201 AACTCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAA-TT
1 AACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTT
63230265 AAAAACTCT
66 AAAAACTCT
* *
63230274 AACCCTAACCTAATTTAATTAAAAACTCTAAACC---TTTAACTTAAAAACCCTAAACCCTTAAC
1 AACCCTAACCTAATTTAATTAAAAACCCT-AGCCTAATTTAA-TTAAAAACCCTAAACCCTTAAC
*
63230336 TTTAAAAACCCT
64 -TTAAAAACTCT
* *
63230348 AACCTTAACGTAAT
1 AACCCTAACCTAAT
63230362 GTTAGATTTG
Statistics
Matches: 269, Mismatches: 14, Indels: 38
0.84 0.04 0.12
Matches are distributed among these distances:
67 3 0.01
68 28 0.10
69 14 0.05
70 13 0.05
71 17 0.06
72 31 0.12
73 94 0.35
74 69 0.26
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (74 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTT
AAAAACTCT
Found at i:63230221 original size:141 final size:141
Alignment explanation
Indices: 63229724--63230326 Score: 685
Period size: 141 Copynumber: 4.3 Consensus size: 141
63229714 AACCCTAGCC
* * *
63229724 TAATTAAAAACCCTAAACCCTTAACTTAAAAGCCCTAACCTAATTTAATTAAAATCCCTAAACC-
1 TAATTAAAAACCCTAAACCTTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCT
*
63229788 --CTTAACTTAAAAACTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACT---
66 AACTTAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACTAAC
63229848 -CTAACCTAATT
130 CCTAACCTAATT
*
63229859 TAATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAA
1 TAATTAAAAACCCTAAACC---TTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCT-AA
*
63229922 ACCTTAACTTAA--AAACCCTAACTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTT--
62 ACC-TAACTTAATTAAA----AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAA
63229983 AAA--AACCCTAACCTAATT
122 AAACTAACCCTAACCTAATT
* *
63230001 TAATTAAAAACCCT-AGCCTAATTTAA-TTAAAAACCCTAAACCCTTAACTTAA--AAACTCTAA
1 TAATTAAAAACCCTAAACC---TTTAACTTAAAAACCCT-AA-CC-TAATTTAATTAAA----AA
* **
63230062 CCCT-AACCTAATTTAATTAAAAACCCTGGCCTAATTTAATT-AAAACCCTAAACCCTTAACTTA
56 CCCTAAACCTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTA
63230125 AAAACTCTAACCCTAACCTAATT
121 AAAA--CTAACCCTAACCTAATT
* *
63230148 TAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACTCT-AACCT
1 TAATTAAAAACCCTAAACCTTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCT
* *
63230212 AATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAACTCTAA
66 AACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAA--CTAA
63230276 CCCTAACCTAATT
129 CCCTAACCTAATT
*
63230289 TAATTAAAAACTCTAAACCTTTAACTTAAAAACCCTAA
1 TAATTAAAAACCCTAAACCTTTAACTTAAAAACCCTAA
63230327 ACCCTTAACT
Statistics
Matches: 414, Mismatches: 18, Indels: 66
0.83 0.04 0.13
Matches are distributed among these distances:
134 4 0.01
135 14 0.03
136 31 0.07
137 9 0.02
138 3 0.01
140 3 0.01
141 129 0.31
142 124 0.30
143 14 0.03
144 11 0.03
145 20 0.05
146 14 0.03
147 35 0.08
148 3 0.01
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.29
Consensus pattern (141 bp):
TAATTAAAAACCCTAAACCTTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCT
AACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACTAACC
CTAACCTAATT
Found at i:63230280 original size:27 final size:27
Alignment explanation
Indices: 63230247--63230304 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
63230237 TTTAATTAAA
63230247 AACCCTAAACC-CTTAATTAAAAACTCT
1 AACCCT-AACCACTTAATTAAAAACTCT
*
63230274 AACCCTAACCTAATTTAATTAAAAACTCT
1 AACCCTAACC--ACTTAATTAAAAACTCT
63230303 AA
1 AA
63230305 ACCTTTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 4 0.15
27 6 0.22
29 17 0.63
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.28
Consensus pattern (27 bp):
AACCCTAACCACTTAATTAAAAACTCT
Found at i:63230499 original size:116 final size:116
Alignment explanation
Indices: 63230358--63230575 Score: 391
Period size: 116 Copynumber: 1.9 Consensus size: 116
63230348 AACCTTAACG
*
63230358 TAATGTTAGATTTGGAAAAATGTTTTGACTGATACTAACAAATAATAATTTTACATAATTTGATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTGATACTAACAAATAATAATTGTACATAATTTGATA
*
63230423 ATTTTTCTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
66 ATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
* * *
63230474 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTGTATATAATTTGATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTGATACTAACAAATAATAATTGTACATAATTTGATA
63230539 ATTTTACTAACCATTAATACAATTTTTTGACTTAATA
66 ATTTTACTAACCATTAATACAATTTTTTGACTTAATA
63230576 CAATTTATCA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 97 1.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (116 bp):
TAATGTTAGATTTGGAAAAATGTTTTGACTGATACTAACAAATAATAATTGTACATAATTTGATA
ATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
Found at i:63230592 original size:17 final size:18
Alignment explanation
Indices: 63230551--63230592 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
63230541 TTTACTAACC
* *
63230551 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
63230569 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
63230586 ATTAATA
1 ATTAATA
63230593 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:63233765 original size:124 final size:125
Alignment explanation
Indices: 63233606--63233956 Score: 507
Period size: 125 Copynumber: 2.8 Consensus size: 125
63233596 CCCAAACATG
63233606 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATTGCATCCTGC
1 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATTGCATCCTGC
63233671 TAGAAGCGATTTTATATTATTTCTTCAGAAACGTCAAAAAA-AATTATTTCTTACATG-C
66 TAGAAGCGATTTTATATTATTTCTTCAGAAACGTCAAAAAATAATTATTTCTTACATGAC
** * *
63233729 CTTACTGTAGCAAAAGCGCA-CTGGCGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCT
1 C-TACTGTAGCAAAAGCGCATC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATTGCATCCT
* * *
63233793 GCTAGAAGCGATTTTATACTATTTGC-TCAGAAACGTCAAAAAATAATTATTTCTTCCGTGAC
64 GCTAGAAGCGATTTTATATTATTT-CTTCAGAAACGTCAAAAAATAATTATTTCTTACATGAC
* * *
63233855 CTACTGTAGAAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAT-CATCCTG
1 CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAAT-TGCATCCTG
* *
63233919 CTATAAGCGATTTTATATTATTT-TATCAGAAACATCAA
65 CTAGAAGCGATTTTATATTATTTCT-TCAGAAACGTCAA
63233957 CTCGAAATTA
Statistics
Matches: 202, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
123 2 0.01
124 96 0.48
125 101 0.50
126 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATTGCATCCTGC
TAGAAGCGATTTTATATTATTTCTTCAGAAACGTCAAAAAATAATTATTTCTTACATGAC
Found at i:63238200 original size:11 final size:13
Alignment explanation
Indices: 63238176--63238207 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
63238166 TAGTTTATTA
63238176 ATATTTTAATATG
1 ATATTTTAATATG
63238189 AT-TTTTAA-ATG
1 ATATTTTAATATG
63238200 ATATTTTA
1 ATATTTTA
63238208 TTAATTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:63240015 original size:46 final size:46
Alignment explanation
Indices: 63239948--63240237 Score: 408
Period size: 46 Copynumber: 6.6 Consensus size: 46
63239938 TTTGAGTACT
* *
63239948 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
63239994 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
63240040 TCTGATCAAGTGAAAAAGTGAT-A-----AG---T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
63240076 TCCGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
63240122 TCTGATCATGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
63240168 TCTGATCAAGAGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
63240213 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
63240238 ATCATACGTA
Statistics
Matches: 221, Mismatches: 13, Indels: 23
0.86 0.05 0.09
Matches are distributed among these distances:
36 30 0.14
37 2 0.01
40 2 0.01
42 2 0.01
43 12 0.05
44 5 0.02
45 21 0.10
46 147 0.67
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:63240071 original size:36 final size:36
Alignment explanation
Indices: 63240030--63240102 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
63240020 GGTAGCTTTA
*
63240030 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCCGATCAAGTGAAAAAGTGATAAGT
*
63240066 GCTACACTTATCCGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCCGATCAAGTGAAAAAGTGATAAGT
63240102 G
1 G
63240103 GTAGCTTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (36 bp):
GCTACACTTATCCGATCAAGTGAAAAAGTGATAAGT
Found at i:63240175 original size:92 final size:89
Alignment explanation
Indices: 63239963--63240239 Score: 349
Period size: 82 Copynumber: 3.2 Consensus size: 89
63239953 TCAAGAGATA
* * * *
63239963 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTT
1 AAGTGATAAGTGATAGCTTTAGCTACACTTATCCGATCAAGAGACAAAGTGATAAGTGGTAGC-C
63240028 TAGCTACACTTATCTGAT------C
65 TAGCTACACTTATCTGATCAGGGAC
* *
63240047 AAGTGAAAAAGTGATAAG---T-GCTACACTTATCCGATCAAGTGACAAAGTGATAAGTGGTAGC
1 AAGTG-ATAAGTGAT-AGCTTTAGCTACACTTATCCGATCAAGAGACAAAGTGATAAGTGGTAGC
* *
63240108 TTTAGCTACACTTATCTGATCATGTGAC
64 -CTAGCTACACTTATCTGATCA-GGGAC
*
63240136 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCC
1 -AAGTGATAAGTGATAGCTTTAGCTACACTTATCCGATCAAGAGACAAAGTGATAAGTGGTAGCC
63240201 TAGCTACACTTATCTGATCAGGGAC
65 TAGCTACACTTATCTGATCAGGGAC
63240226 AAGTGATAAGTGAT
1 AAGTGATAAGTGAT
63240240 CATACGTAAG
Statistics
Matches: 171, Mismatches: 8, Indels: 23
0.85 0.04 0.11
Matches are distributed among these distances:
82 61 0.36
83 1 0.01
84 5 0.03
85 7 0.04
86 2 0.01
88 2 0.01
89 23 0.13
90 9 0.05
91 21 0.12
92 40 0.23
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (89 bp):
AAGTGATAAGTGATAGCTTTAGCTACACTTATCCGATCAAGAGACAAAGTGATAAGTGGTAGCCT
AGCTACACTTATCTGATCAGGGAC
Found at i:63240186 original size:128 final size:128
Alignment explanation
Indices: 63239951--63240194 Score: 434
Period size: 128 Copynumber: 1.9 Consensus size: 128
63239941 GAGTACTTCT
*
63239951 GATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGAT
1 GATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGAT
* *
63240016 AAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCC
66 AAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAAAAAGTGATAAGTGCTACACTTATCC
* *
63240079 GATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCATGTGACAAAGTGAT
1 GATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGAT
*
63240144 AAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
66 AAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAAAAAGTGATAAGTG
63240195 GTAGCCTAGC
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
128 110 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (128 bp):
GATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGAT
AAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAAAAAGTGATAAGTGCTACACTTATCC
Found at i:63242648 original size:33 final size:32
Alignment explanation
Indices: 63242611--63242718 Score: 126
Period size: 33 Copynumber: 3.3 Consensus size: 32
63242601 TTTCTTTTTG
* * *
63242611 GTGTGATGGTTGGTTTTGCTCTTATAAACATT
1 GTGTGATGGTTGGTTTAGCTCTTATGAGCATT
* *
63242643 AGTGTGATGGTCGATTTAGCTCTTATGAGCATT
1 -GTGTGATGGTTGGTTTAGCTCTTATGAGCATT
* *
63242676 GGTATGATGGTTGGATTAGCTCTTATGAGCATT
1 -GTGTGATGGTTGGTTTAGCTCTTATGAGCATT
63242709 GATGTGATGG
1 G-TGTGATGG
63242719 ATGGATTGGC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 1 0.02
33 62 0.98
ACGTcount: A:0.20, C:0.09, G:0.30, T:0.41
Consensus pattern (32 bp):
GTGTGATGGTTGGTTTAGCTCTTATGAGCATT
Found at i:63242724 original size:33 final size:33
Alignment explanation
Indices: 63242612--63242730 Score: 125
Period size: 33 Copynumber: 3.6 Consensus size: 33
63242602 TTCTTTTTGG
* * * *
63242612 TGTGATGGTTGGTTTTGCTCTTATAAACATT-A
1 TGTGATGGTTGGATTAGCTCTTATGAGCATTGA
* *
63242644 GTGTGATGG-TCGATTTAGCTCTTATGAGCATTGG
1 -TGTGATGGTTGGA-TTAGCTCTTATGAGCATTGA
*
63242678 TATGATGGTTGGATTAGCTCTTATGAGCATTGA
1 TGTGATGGTTGGATTAGCTCTTATGAGCATTGA
* *
63242711 TGTGATGGATGGATTGGCTC
1 TGTGATGGTTGGATTAGCTC
63242731 AAGTGAGCAT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
32 2 0.03
33 66 0.93
34 3 0.04
ACGTcount: A:0.20, C:0.10, G:0.29, T:0.40
Consensus pattern (33 bp):
TGTGATGGTTGGATTAGCTCTTATGAGCATTGA
Found at i:63242738 original size:33 final size:33
Alignment explanation
Indices: 63242658--63242740 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
63242648 GATGGTCGAT
* * *
63242658 TTAGCTCTTATGAGCATTGGTATGATGGTTGGA
1 TTAGCTCTAATGAGCATTGATATGATGGATGGA
* *
63242691 TTAGCTCTTATGAGCATTGATGTGATGGATGGA
1 TTAGCTCTAATGAGCATTGATATGATGGATGGA
*
63242724 TTGGCTC-AAGTGAGCAT
1 TTAGCTCTAA-TGAGCAT
63242741 CTGGTGTGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 1 0.02
33 43 0.98
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.36
Consensus pattern (33 bp):
TTAGCTCTAATGAGCATTGATATGATGGATGGA
Done.