Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 205 of 216
Found at i:63597329 original size:17 final size:17
Alignment explanation
Indices: 63597307--63597339 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63597297 TATTATTTTA
*
63597307 TAAAATTTTTAAAATTT
1 TAAAATTTTAAAAATTT
63597324 TAAAATTTTAAAAATT
1 TAAAATTTTAAAAATT
63597340 CAACTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAAATTTTAAAAATTT
Found at i:63597384 original size:18 final size:18
Alignment explanation
Indices: 63597363--63597405 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
63597353 ATTTTTTAGA
* *
63597363 TTTTAAAAAAATATAATT
1 TTTTAAAAAAATACAAAT
**
63597381 TTTTTTAAAAATACAAAT
1 TTTTAAAAAAATACAAAT
63597399 TTTTAAA
1 TTTTAAA
63597406 TTTTATAAAT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTTAAAAAAATACAAAT
Found at i:63597399 original size:19 final size:20
Alignment explanation
Indices: 63597363--63597402 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
63597353 ATTTTTTAGA
*
63597363 TTTTAAAAAAATATAATTTT
1 TTTTAAAAAAACATAATTTT
*
63597383 TTTTAAAAATACA-AATTTT
1 TTTTAAAAAAACATAATTTT
63597402 T
1 T
63597403 AAATTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTAAAAAAACATAATTTT
Found at i:63597452 original size:18 final size:18
Alignment explanation
Indices: 63597399--63597452 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
63597389 AAATACAAAT
* * *
63597399 TTTTAAATTTTATAAATA
1 TTTTAATTTTTGTAATTA
*
63597417 TTTTAATTTTTGAAAATTA
1 TTTTAATTTTTG-TAATTA
63597436 TTTTAATTTTTGTAATT
1 TTTTAATTTTTGTAATT
63597453 TTTATTAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (18 bp):
TTTTAATTTTTGTAATTA
Found at i:63598001 original size:11 final size:11
Alignment explanation
Indices: 63597994--63598024 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
63597984 TATAATATTC
63597994 AAATAATAATA
1 AAATAATAATA
*
63598005 AAATAATAAGA
1 AAATAATAATA
63598016 AAATAATAA
1 AAATAATAA
63598025 AACAGTGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (11 bp):
AAATAATAATA
Found at i:63601532 original size:90 final size:90
Alignment explanation
Indices: 63601378--63601541 Score: 220
Period size: 90 Copynumber: 1.8 Consensus size: 90
63601368 AGGCTTCTGA
** *
63601378 TTGAGCAGATGGAAGACTGAGATGATAAAACAAGTCTCTAGATGAGTTGATGGAAGCCTAATGAT
1 TTGAGCAGATGGAAGACTGAGACAATAAAACAAGTCTCTAGATGAGTTGATGGAAACCTAATGAT
*
63601443 AGAATAAGGTACTGAACGCTTTTGG
66 AGAACAAGGTACTGAACGCTTTTGG
* * * * * * *
63601468 TTGAGTAGATGGAAGATTGAGACAATACAACAAGTTTCTGGATGAGTTGATGGAAACTTGATGAT
1 TTGAGCAGATGGAAGACTGAGACAATAAAACAAGTCTCTAGATGAGTTGATGGAAACCTAATGAT
*
63601533 GGAACAAGG
66 AGAACAAGG
63601542 CTTGCAGTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 62 1.00
ACGTcount: A:0.36, C:0.10, G:0.29, T:0.26
Consensus pattern (90 bp):
TTGAGCAGATGGAAGACTGAGACAATAAAACAAGTCTCTAGATGAGTTGATGGAAACCTAATGAT
AGAACAAGGTACTGAACGCTTTTGG
Found at i:63609072 original size:9 final size:9
Alignment explanation
Indices: 63609060--63609109 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
63609050 AAAATTTAAA
63609060 AAAAATTAT
1 AAAAATTAT
63609069 AAAAATT-T
1 AAAAATTAT
*
63609077 -AAAATCAT
1 AAAAATTAT
*
63609085 TAAAATTATT
1 AAAAATTA-T
63609095 ATAAAATTAT
1 A-AAAATTAT
63609105 AAAAA
1 AAAAA
63609110 ATAATTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
7 5 0.15
8 2 0.06
9 17 0.50
10 3 0.09
11 7 0.21
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:63609128 original size:21 final size:21
Alignment explanation
Indices: 63609086--63609129 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
63609076 TAAAATCATT
*
63609086 AAAATTATTATAAAATTATAA
1 AAAATAATTATAAAATTATAA
* * *
63609107 AAAATAATTTTAATATTTTAA
1 AAAATAATTATAAAATTATAA
63609128 AA
1 AA
63609130 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAATAATTATAAAATTATAA
Found at i:63609150 original size:29 final size:29
Alignment explanation
Indices: 63609064--63609150 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 29
63609054 TTTAAAAAAA
** *
63609064 ATTATAAAAATTTAAAATCATTAA--AATT
1 ATTAT-AAAATTTAAAAAAATTAATTAAAT
*
63609092 ATTATAAAA-TTATAAAAAA-TAATTTTAAT
1 ATTATAAAATTTA-AAAAAATTAA-TTAAAT
*
63609121 ATTTTAAAATTTAAAAAAATTAATTAAAT
1 ATTATAAAATTTAAAAAAATTAATTAAAT
63609150 A
1 A
63609151 CTGGCTGGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
26 6 0.13
27 8 0.17
28 5 0.11
29 22 0.47
30 6 0.13
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (29 bp):
ATTATAAAATTTAAAAAAATTAATTAAAT
Found at i:63611802 original size:5 final size:5
Alignment explanation
Indices: 63611792--63611819 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
63611782 CATTTCACTA
63611792 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
63611820 GTCTATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:63614084 original size:51 final size:50
Alignment explanation
Indices: 63614007--63614122 Score: 187
Period size: 51 Copynumber: 2.3 Consensus size: 50
63613997 CGGATCACAT
*
63614007 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGGAGCTAAAACTACCAC
1 TTATCACTTGTCACTTGTCACCGATCAGATAAGTGGAG-TAAAACTACCAC
* * *
63614058 TTATCACTTGTCACTTGTCACCGATCAGATAAGTGTAGTTAAGCTACCAC
1 TTATCACTTGTCACTTGTCACCGATCAGATAAGTGGAGTAAAACTACCAC
63614108 TTATCACTTGTCACT
1 TTATCACTTGTCACT
63614123 GAGAAGAAGT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
50 25 0.41
51 36 0.59
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTTGTCACCGATCAGATAAGTGGAGTAAAACTACCAC
Found at i:63619609 original size:21 final size:24
Alignment explanation
Indices: 63619583--63619641 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
63619573 TATATTATGG
63619583 GTATCGGTACC-CA-A-CAGCCAA
1 GTATCGGTACCTCATAGCAGCCAA
* *
63619604 GTATCGATACCTTATAGCAGCCAA
1 GTATCGGTACCTCATAGCAGCCAA
*
63619628 GTCTCGGTACCTCA
1 GTATCGGTACCTCA
63619642 CTTAGAGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 10 0.33
22 1 0.03
23 1 0.03
24 18 0.60
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.22
Consensus pattern (24 bp):
GTATCGGTACCTCATAGCAGCCAA
Found at i:63623864 original size:20 final size:23
Alignment explanation
Indices: 63623825--63623867 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
63623815 TTGATATATA
63623825 AATAATGCATATAATAATATAAT
1 AATAATGCATATAATAATATAAT
63623848 AATAATG-ATA-AATATATATA
1 AATAATGCATATAATA-ATATA
63623868 TACTAGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 7 0.37
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (23 bp):
AATAATGCATATAATAATATAAT
Found at i:63626674 original size:16 final size:16
Alignment explanation
Indices: 63626652--63626720 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
63626642 TATCGTTCGC
63626652 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
63626668 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
63626684 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
63626701 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
63626717 TGTA
1 TGTA
63626721 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:63626698 original size:33 final size:32
Alignment explanation
Indices: 63626652--63626720 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
63626642 TATCGTTCGC
63626652 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
63626684 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
63626717 TGTA
1 TGTA
63626721 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:63626977 original size:18 final size:17
Alignment explanation
Indices: 63626956--63626990 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63626946 TTATTATTAA
*
63626956 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
63626974 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63626991 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63627097 original size:18 final size:17
Alignment explanation
Indices: 63627076--63627110 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63627066 TTATTATTAA
*
63627076 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
63627094 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63627111 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63627152 original size:120 final size:120
Alignment explanation
Indices: 63626939--63627201 Score: 517
Period size: 120 Copynumber: 2.2 Consensus size: 120
63626929 ATCATATTTA
63626939 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
63627004 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
63627059 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
63627124 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
63627179 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
63627202 AACTTGAAAA
Statistics
Matches: 142, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 142 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:63630265 original size:33 final size:33
Alignment explanation
Indices: 63630226--63630335 Score: 136
Period size: 33 Copynumber: 3.3 Consensus size: 33
63630216 ATTATAAAGC
63630226 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
63630259 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
63630292 AATGT-T-ATTGTCCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
63630325 ATGTATAATTG
1 ATGTATAATTG
63630336 TTGGTTTAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
32 9 0.14
33 49 0.74
34 8 0.12
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:63630342 original size:51 final size:50
Alignment explanation
Indices: 63630282--63630384 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 50
63630272 CTAAAATTAC
63630282 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATG-ATAA
63630333 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
63630383 TT
1 TT
63630385 TTTACGTATA
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
50 7 0.14
51 44 0.86
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (50 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
Found at i:63630558 original size:86 final size:86
Alignment explanation
Indices: 63630451--63630631 Score: 355
Period size: 86 Copynumber: 2.1 Consensus size: 86
63630441 TTCTCTCCAC
63630451 ATAA-AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
63630515 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
63630536 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
63630601 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
63630622 ATAATAATTA
1 ATAATAATTA
63630632 CAATTATATT
Statistics
Matches: 95, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 4 0.04
86 91 0.96
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (86 bp):
ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
TTAATATTAAAGATAAAAATT
Found at i:63635471 original size:24 final size:24
Alignment explanation
Indices: 63635426--63635471 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
63635416 AAAATTCAAA
**
63635426 ATATTTATAAAAATTTCAAAATTT
1 ATATTTATAAAAAAATCAAAATTT
* *
63635450 ATATTTTTAAAAAAATCTAAAT
1 ATATTTATAAAAAAATCAAAAT
63635472 AATATAAGAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATTTATAAAAAAATCAAAATTT
Found at i:63635631 original size:18 final size:19
Alignment explanation
Indices: 63635609--63635650 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
63635599 TATAATTTGA
*
63635609 AAATTTTATAAA-TATTTT
1 AAATTTTAAAAATTATTTT
*
63635627 GAATTTTAAAAATTATTTT
1 AAATTTTAAAAATTATTTT
63635646 AAATT
1 AAATT
63635651 ATTTTATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
AAATTTTAAAAATTATTTT
Found at i:63636510 original size:24 final size:24
Alignment explanation
Indices: 63636483--63636535 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
63636473 TCGATTAACG
63636483 GTTAATTCGATTCGAAACTTGTCA
1 GTTAATTCGATTCGAAACTTGTCA
*
63636507 GTTAATTCGGTTCGAAACTTGTCA
1 GTTAATTCGATTCGAAACTTGTCA
63636531 GTTAA
1 GTTAA
63636536 CCTCTAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (24 bp):
GTTAATTCGATTCGAAACTTGTCA
Found at i:63648214 original size:17 final size:17
Alignment explanation
Indices: 63648192--63648229 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
63648182 AAAAATTAAA
63648192 CCAACAGTCTAGAAAGT
1 CCAACAGTCTAGAAAGT
63648209 CCAACAGTCTAGAAAGT
1 CCAACAGTCTAGAAAGT
63648226 CCAA
1 CCAA
63648230 TTAATACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (17 bp):
CCAACAGTCTAGAAAGT
Found at i:63649547 original size:21 final size:23
Alignment explanation
Indices: 63649520--63649569 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
63649510 CTCAAAGGTG
*
63649520 GTTCTTTTTC-TATTTTTTTTCT
1 GTTCTTTTGCGTATTTTTTTTCT
*
63649542 -TTC-TTTGCGTTTTTTTTTTCT
1 GTTCTTTTGCGTATTTTTTTTCT
63649563 GTTCTTT
1 GTTCTTT
63649570 CATTTTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
20 4 0.17
21 14 0.61
22 3 0.13
23 2 0.09
ACGTcount: A:0.02, C:0.14, G:0.08, T:0.76
Consensus pattern (23 bp):
GTTCTTTTGCGTATTTTTTTTCT
Found at i:63649575 original size:21 final size:21
Alignment explanation
Indices: 63649532--63649576 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
63649522 TCTTTTTCTA
*
63649532 TTTTTTTTCTTTCTTTGCGTT
1 TTTTTTTTCTTTCTTTGCATT
63649553 TTTTTTTTCTGTTCTTT-CATT
1 TTTTTTTTCT-TTCTTTGCATT
63649574 TTT
1 TTT
63649577 CGTATACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.02, C:0.13, G:0.07, T:0.78
Consensus pattern (21 bp):
TTTTTTTTCTTTCTTTGCATT
Found at i:63664534 original size:4 final size:4
Alignment explanation
Indices: 63664525--63664551 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
63664515 CTAGCAGTTA
63664525 CCTC CCTC CCTC CCTC CCTC CCTC CCT
1 CCTC CCTC CCTC CCTC CCTC CCTC CCT
63664552 TTTACCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.74, G:0.00, T:0.26
Consensus pattern (4 bp):
CCTC
Found at i:63675302 original size:4 final size:4
Alignment explanation
Indices: 63675293--63675334 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
63675283 TAACATAAAT
63675293 GACA GACA GACA GACA GACA GACA GACA GACA GACA GACA GA
1 GACA GACA GACA GACA GACA GACA GACA GACA GACA GACA GA
63675335 GCGTAAACGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.24, G:0.26, T:0.00
Consensus pattern (4 bp):
GACA
Found at i:63678183 original size:27 final size:27
Alignment explanation
Indices: 63678106--63678183 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
63678096 AACGGGTCAG
*
63678106 GCCAATACTGTTGGCGGCACCAAAGGT
1 GCCAATACTGTTGGCGGCACCAATGGT
* **
63678133 GCCAATGCCATTGGCGGCACCAATGGT
1 GCCAATACTGTTGGCGGCACCAATGGT
63678160 GCCAATACTGTTGGCGGCACCAAT
1 GCCAATACTGTTGGCGGCACCAAT
63678184 TGATAGTTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (27 bp):
GCCAATACTGTTGGCGGCACCAATGGT
Found at i:63681135 original size:24 final size:24
Alignment explanation
Indices: 63681108--63681161 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
63681098 ATATGATATC
63681108 TTTTTTTTATTTATCAAAATATAA
1 TTTTTTTTATTTATCAAAATATAA
63681132 TTTTTTTTATTTATCAAAATATAA
1 TTTTTTTTATTTATCAAAATATAA
63681156 TTTTTT
1 TTTTTT
63681162 GGTAAATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTTTTTATTTATCAAAATATAA
Found at i:63681170 original size:23 final size:23
Alignment explanation
Indices: 63681120--63681173 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
63681110 TTTTTTATTT
* *
63681120 ATCAAAATATAATTTTTTTTATTT
1 ATCAAAATATAATTTTTTGTA-TA
63681144 ATCAAAATATAATTTTTTGGTA-A
1 ATCAAAATATAATTTTTT-GTATA
63681167 ATCAAAA
1 ATCAAAA
63681174 AAAAAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 7 0.26
24 18 0.67
25 2 0.07
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (23 bp):
ATCAAAATATAATTTTTTGTATA
Found at i:63681922 original size:4 final size:4
Alignment explanation
Indices: 63681894--63682051 Score: 80
Period size: 4 Copynumber: 38.5 Consensus size: 4
63681884 CCTCTTCTTC
* * * *
63681894 TTCT TT-T TTTT TTCT CTTC- TCCT TTCT TTCT TTCCT TATTT TTCT TTGT
1 TTCT TTCT TTCT TTCT -TTCT TTCT TTCT TTCT TT-CT T-TCT TTCT TTCT
63681943 TT-T TTCT TCTCAT TTCCT CTTC- TTC- TTCT TTCT TTCT TT-T TTC-
1 TTCT TTCT T-TC-T TT-CT -TTCT TTCT TTCT TTCT TTCT TTCT TTCT
* * * *
63681986 TCCT TTCCTT TTCT TTCC TT-T TTCT TTCT TTCCT CTCCT TCCTT TTCT
1 TTCT TT-C-T TTCT TTCT TTCT TTCT TTCT TT-CT -TTCT TTC-T TTCT
63682034 TTCT TTCT TTCT TTCT TT
1 TTCT TTCT TTCT TTCT TT
63682052 TCCTCTCCTT
Statistics
Matches: 123, Mismatches: 12, Indels: 38
0.71 0.07 0.22
Matches are distributed among these distances:
3 21 0.17
4 70 0.57
5 22 0.18
6 10 0.08
ACGTcount: A:0.01, C:0.28, G:0.01, T:0.70
Consensus pattern (4 bp):
TTCT
Found at i:63681951 original size:39 final size:39
Alignment explanation
Indices: 63681894--63682016 Score: 116
Period size: 39 Copynumber: 3.3 Consensus size: 39
63681884 CCTCTTCTTC
*
63681894 TTCTTT-TTTTTTTCTCTTCTCCTTTCTTTCTTTCCTTA
1 TTCTTTCTTTTTTTTTCTTCTCCTTTCTTTCTTTCCTTA
* * *
63681932 TT-TTTCTTTGTTTTTTCTTCTCATTTC-CTC-TT-CTTC
1 TTCTTTCTTT-TTTTTTCTTCTCCTTTCTTTCTTTCCTTA
* *
63681968 TTCTTTC-TTTCTTTT-TTCTCCTTTCCTTTTCTTTCCTTT
1 TTCTTTCTTTTTTTTTCTTCTCCTTT-C-TTTCTTTCCTTA
63682007 TTCTTTCTTT
1 TTCTTTCTTT
63682017 CCTCTCCTTC
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
34 8 0.12
35 6 0.09
36 7 0.10
37 11 0.16
38 9 0.13
39 25 0.37
40 2 0.03
ACGTcount: A:0.02, C:0.26, G:0.01, T:0.72
Consensus pattern (39 bp):
TTCTTTCTTTTTTTTTCTTCTCCTTTCTTTCTTTCCTTA
Found at i:63681996 original size:5 final size:5
Alignment explanation
Indices: 63681986--63682061 Score: 54
Period size: 5 Copynumber: 16.0 Consensus size: 5
63681976 TTCTTTTTTC
* * * *
63681986 TCCTT TCCTT TTCTT TCCTTT TTCTT T-CTT TCCTC TCC-T TCCTT TTCTT
1 TCCTT TCCTT TCCTT TCC-TT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
* *
63682035 T-CTT T-CTT T-CTT TCTTT TCCTC TCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
63682062 CTCCCCCCAG
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
4 19 0.33
5 34 0.60
6 4 0.07
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (5 bp):
TCCTT
Found at i:63681996 original size:15 final size:14
Alignment explanation
Indices: 63681908--63682053 Score: 88
Period size: 14 Copynumber: 10.1 Consensus size: 14
63681898 TTTTTTTTTC
63681908 TCTTCTCCTTTC-TT
1 TCTT-TCCTTTCTTT
63681922 TCTTTCCTTAT-TTT
1 TCTTTCCTT-TCTTT
** *
63681936 TCTTTGTTTTTTCTTC
1 TC-TT-TCCTTTCTTT
63681952 TCATTTCCTCTTCTTCT
1 TC-TTTCCT-TTCTT-T
63681969 TCTTT-CTTTCTTT
1 TCTTTCCTTTCTTT
63681982 T-TTCTCCTTTCCTTT
1 TCTT-TCCTTT-CTTT
*
63681997 TCTTTCCTTTTTCTT
1 TCTTTCCTTTCT-TT
* *
63682012 TCTTTCCTCTCCTT
1 TCTTTCCTTTCTTT
* *
63682026 CCTTTTCTTTC-TT
1 TCTTTCCTTTCTTT
63682039 TCTTT-CTTTCTTT
1 TCTTTCCTTTCTTT
63682052 TC
1 TC
63682054 CTCTCCTTCT
Statistics
Matches: 104, Mismatches: 15, Indels: 27
0.71 0.10 0.18
Matches are distributed among these distances:
12 7 0.07
13 18 0.17
14 29 0.28
15 29 0.28
16 19 0.18
17 2 0.02
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.68
Consensus pattern (14 bp):
TCTTTCCTTTCTTT
Found at i:63682017 original size:39 final size:39
Alignment explanation
Indices: 63681910--63682051 Score: 117
Period size: 39 Copynumber: 3.9 Consensus size: 39
63681900 TTTTTTTCTC
* *
63681910 TTCTCCTTT-C-TTTCTTTCCTTATT-TTTCTTTGTTTT
1 TTCTCCTTTCCTTTTCTTTCCTTTTTCTTTCTTTCTTTT
* * * *
63681946 TTCT--TCTCATTTCCTCTT-CTTCTTCTTTCTTTCTTTT
1 TTCTCCTTTCCTTTTCT-TTCCTTTTTCTTTCTTTCTTTT
63681983 TTCTCCTTTCCTTTTCTTTCCTTTTTCTTTCTTTC----
1 TTCTCCTTTCCTTTTCTTTCCTTTTTCTTTCTTTCTTTT
* *
63682018 CTCTCC-TTCCTTTTCTTTCTTTCTTTCTTTCTTT
1 TTCTCCTTTCCTTTTCTTTCCTT-TTTCTTTCTTT
63682052 TCCTCTCCTT
Statistics
Matches: 87, Mismatches: 11, Indels: 17
0.76 0.10 0.15
Matches are distributed among these distances:
34 17 0.20
35 16 0.18
36 13 0.15
37 17 0.20
38 2 0.02
39 22 0.25
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.69
Consensus pattern (39 bp):
TTCTCCTTTCCTTTTCTTTCCTTTTTCTTTCTTTCTTTT
Found at i:63682038 original size:62 final size:62
Alignment explanation
Indices: 63681933--63682045 Score: 162
Period size: 59 Copynumber: 1.9 Consensus size: 62
63681923 CTTTCCTTAT
** *
63681933 TTTTCTTTGTTTTTTCTTCTCATTTCCTCTTCTTCTTCTTTCTTTCTTT-TTTCTCCTTTCC
1 TTTTCTTTCCTTTTTCTTCTCATTTCCTCTCCTTCTTCTTTCTTTCTTTCTTTCTCCTTTCC
*
63681994 TTTTCTTTCCTTTTTCTT-TC-TTTCCTCTCCTTCCT-TTTCTTTCTTTCTTTCT
1 TTTTCTTTCCTTTTTCTTCTCATTTCCTCTCCTTCTTCTTTCTTTCTTTCTTTCT
63682046 TTCTTTTCCT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
58 11 0.23
59 18 0.38
60 2 0.04
61 16 0.34
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.69
Consensus pattern (62 bp):
TTTTCTTTCCTTTTTCTTCTCATTTCCTCTCCTTCTTCTTTCTTTCTTTCTTTCTCCTTTCC
Found at i:63682129 original size:27 final size:27
Alignment explanation
Indices: 63682099--63682175 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
63682089 AAATAAGGCC
* *
63682099 TTGGTGCCGCCAATGGTATTGGCATCA
1 TTGGTGCCGCCAATGGCATTGGCACCA
* *
63682126 TTGGTGCCGCTAATGGCATTGGCACCT
1 TTGGTGCCGCCAATGGCATTGGCACCA
*
63682153 TTGGTGCCGCCAATGGCAGTGGC
1 TTGGTGCCGCCAATGGCATTGGC
63682176 CTGACCCTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.16, C:0.25, G:0.32, T:0.27
Consensus pattern (27 bp):
TTGGTGCCGCCAATGGCATTGGCACCA
Found at i:63682255 original size:26 final size:26
Alignment explanation
Indices: 63682224--63682282 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
63682214 GTTTTTTTAT
* * *
63682224 ATATTTTCGTAATTAAAAAATA-TATA
1 ATATTTTAGTAAATAAAAAA-AGGATA
63682250 ATATTTTAGTAAATAAAAAAAGGATA
1 ATATTTTAGTAAATAAAAAAAGGATA
63682276 ATATTTT
1 ATATTTT
63682283 GGTGAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 1 0.03
26 28 0.97
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.41
Consensus pattern (26 bp):
ATATTTTAGTAAATAAAAAAAGGATA
Found at i:63682618 original size:16 final size:16
Alignment explanation
Indices: 63682594--63682647 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
63682584 TTTGGTTCGC
*
63682594 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
63682610 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
*
63682626 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
63682642 TGTAAT
1 TGTAAT
63682648 AGCAAATCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:63682889 original size:25 final size:24
Alignment explanation
Indices: 63682857--63682911 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 24
63682847 TAATTTAATC
63682857 ATAT-TTAAACATA-ATAATTATTAA
1 ATATATTAAACATATATAATTA--AA
*
63682881 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATA-TATAATTAAA
63682906 ATATAT
1 ATATAT
63682912 AATTTAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 4 0.15
25 16 0.59
27 7 0.26
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
ATATATTAAACATATATAATTAAA
Found at i:63683115 original size:26 final size:28
Alignment explanation
Indices: 63683086--63683146 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
63683076 TATGAATTTG
*
63683086 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
63683112 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
63683140 TAAAATT
1 TATAATT
63683147 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:63683148 original size:91 final size:89
Alignment explanation
Indices: 63683052--63683268 Score: 299
Period size: 91 Copynumber: 2.4 Consensus size: 89
63683042 AATTTAAAAT
* * * *
63683052 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
63683117 TTTAATAATAATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
* *
63683143 AATTATTGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTA-TAATAATAA-ATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
63683208 TTTAATAATGATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
*
63683234 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATT-ATAATAAT-AAAT-TTCTTATATGAATTTA
63683269 CTAAAATCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
91 89 0.80
92 22 0.20
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (89 bp):
AATTATAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATT
TAATAATAATATATAATTTCATAA
Found at i:63683149 original size:44 final size:42
Alignment explanation
Indices: 63683086--63683228 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 42
63683076 TATGAATTTG
63683086 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTA-ATATAATTTAATAAT-ATA
* ** *
63683130 TATAATTTCATAA-AATTATTGA-TAATAATTTTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATTAAT-A-TAAT-TTA-AT-AATATA
* *
63683177 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATT-AATATAATTTAATAAT-ATA
63683221 TATAATTT
1 TATAATTT
63683229 CATAAAATTC
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
43 5 0.06
44 29 0.38
45 9 0.12
46 9 0.12
47 19 0.25
48 6 0.08
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (42 bp):
TATAATTTAAAATAATTATTATTAATATAATTTAATAATATA
Found at i:63683243 original size:47 final size:47
Alignment explanation
Indices: 63683093--63683249 Score: 128
Period size: 47 Copynumber: 3.4 Consensus size: 47
63683083 TTGTATAATT
* * * * *
63683093 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* ** * *
63683140 TAAAATTATTGATAAT-AAT-T--TTTCTTATATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATTTAATA-ATG-ATATATA-ATTTCA
* *
63683184 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
*
63683231 TAAAATTCTTAATAATAAA
1 TAAAATTATTAATAATAAA
63683250 ATGTTCTTAT
Statistics
Matches: 81, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
43 5 0.06
44 15 0.19
45 13 0.16
46 12 0.15
47 31 0.38
48 5 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (47 bp):
TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
Found at i:63686187 original size:9 final size:9
Alignment explanation
Indices: 63686173--63686230 Score: 98
Period size: 9 Copynumber: 6.4 Consensus size: 9
63686163 AACCCAAAAA
63686173 AATTCGGGT
1 AATTCGGGT
*
63686182 AATTCGGTT
1 AATTCGGGT
*
63686191 AATTCGGTT
1 AATTCGGGT
63686200 AATTCGGGT
1 AATTCGGGT
63686209 AATTCGGGT
1 AATTCGGGT
63686218 AATTCGGGT
1 AATTCGGGT
63686227 AATT
1 AATT
63686231 TTTAACCAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.24, C:0.10, G:0.28, T:0.38
Consensus pattern (9 bp):
AATTCGGGT
Found at i:63687376 original size:30 final size:30
Alignment explanation
Indices: 63687330--63687423 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
63687320 TTTTATTATG
*
63687330 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
63687361 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
63687391 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
63687421 CCA
1 CCA
63687424 TAAATATGGA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 53 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:63687385 original size:15 final size:15
Alignment explanation
Indices: 63687340--63687417 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
63687330 CCAATATCTC
63687340 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
63687355 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
63687370 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
63687385 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
63687400 GATACCCATATCTTT
1 GATACCCATATCTTT
63687415 GAT
1 GAT
63687418 TTTCCATAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 9 0.19
15 29 0.62
16 9 0.19
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:63692048 original size:15 final size:15
Alignment explanation
Indices: 63692003--63692110 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
63691993 CCAATATCTC
*
63692003 GATACCCATATCTTT
1 GATACCCATATATTT
**
63692018 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
63692033 GATACCCATATCTTT
1 GATACCCATATATTT
**
63692048 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
63692063 GATACCCATATATTT
1 GATACCCATATATTT
**
63692078 GACTTTCCAT-TATTT
1 GA-TACCCATATATTT
*
63692093 GATACCCATATCTTT
1 GATACCCATATATTT
63692108 GAT
1 GAT
63692111 TTTCCATAAA
Statistics
Matches: 71, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
14 13 0.18
15 45 0.63
16 13 0.18
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:63692117 original size:30 final size:30
Alignment explanation
Indices: 63691993--63692116 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
63691983 TTTTATTATG
*
63691993 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
63692024 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
63692054 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
63692084 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
63692114 CCA
1 CCA
63692117 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:63697484 original size:45 final size:45
Alignment explanation
Indices: 63697420--63697509 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
63697410 CGCTTAAAAG
*
63697420 AAAGTGGTAGGTACCTTTTCACATTCCTTTTACTTTTCAGTAGAT
1 AAAGTGGTAGATACCTTTTCACATTCCTTTTACTTTTCAGTAGAT
* * * *
63697465 AAAGTGGTAGATTCCTTTTCATATTTCTTTTGCTTTTCAGTAGAT
1 AAAGTGGTAGATACCTTTTCACATTCCTTTTACTTTTCAGTAGAT
63697510 TGTTAATAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.46
Consensus pattern (45 bp):
AAAGTGGTAGATACCTTTTCACATTCCTTTTACTTTTCAGTAGAT
Found at i:63718018 original size:9 final size:9
Alignment explanation
Indices: 63718004--63718028 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
63717994 CCACCAATTT
63718004 TTTTTTTTA
1 TTTTTTTTA
63718013 TTTTTTTTA
1 TTTTTTTTA
63718022 TTTTTTT
1 TTTTTTT
63718029 CGTATATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:63718027 original size:109 final size:112
Alignment explanation
Indices: 63717904--63718127 Score: 357
Period size: 109 Copynumber: 2.0 Consensus size: 112
63717894 CACCACCAAT
63717904 TTTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAA-T-AAAAAAA-AA-TTA
1 TTTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAAGTAAAAAAAAGAATTTA
*
63717965 AAATGGTGGTGCCGGCCATTGCCAGGCCACCACCAATTTTTTTTTTTA
66 AAAAGGTGGTGCCGGCCATTGCCAGGCCACCA-CAATTTTTTTTTTTA
*
63718013 TTTTTTTTATTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAAGTAAAAAAAAAAAGAAT
1 TTTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAAGT---AAAAAAAAGAA-
63718078 TTTAAAAAGGTGGTGCCGGCCATTGCCAGGCCACCACAATTTTTTTTTTT
62 TTTAAAAAGGTGGTGCCGGCCATTGCCAGGCCACCACAATTTTTTTTTTT
63718128 TACTTTTTCT
Statistics
Matches: 105, Mismatches: 2, Indels: 9
0.91 0.02 0.08
Matches are distributed among these distances:
109 47 0.45
110 1 0.01
114 7 0.07
115 2 0.02
116 14 0.13
117 34 0.32
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (112 bp):
TTTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAAGTAAAAAAAAGAATTTA
AAAAGGTGGTGCCGGCCATTGCCAGGCCACCACAATTTTTTTTTTTA
Found at i:63718135 original size:117 final size:109
Alignment explanation
Indices: 63717905--63718135 Score: 347
Period size: 117 Copynumber: 2.0 Consensus size: 109
63717895 ACCACCAATT
*
63717905 TTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAATAAAAAAAAATTAAAATG
1 TTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAATAAAAAAAAATTAAAAAG
*
63717970 GTGGTGCCGGCCATTGCCAGGCCACCACCAATTTTTTTTTTTAT
66 GTGGTGCCGGCCATTGCCAGGCCACCACCAATTTTTTTTTTTAC
*
63718014 TTTTTTTATTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAAGTAAAAAAAAAAAGAATT
1 TTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAA-T----AAAAAAA-AA--
63718079 TTAAAAAGGTGGTGCCGGCCATTGCCAGGCCACCA-CAATTTTTTTTTTTTAC
58 TTAAAAAGGTGGTGCCGGCCATTGCCAGGCCACCACCAA-TTTTTTTTTTTAC
63718131 TTTTT
1 TTTTT
63718136 CTTGTACTCT
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
109 46 0.42
110 1 0.01
114 7 0.06
115 2 0.02
116 3 0.03
117 51 0.46
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (109 bp):
TTTTTTTACTTTTTTCGTATATTGATATCTTATCTGACACGAAAAAATAAAAAAAAATTAAAAAG
GTGGTGCCGGCCATTGCCAGGCCACCACCAATTTTTTTTTTTAC
Found at i:63719982 original size:83 final size:82
Alignment explanation
Indices: 63719890--63720055 Score: 262
Period size: 83 Copynumber: 2.0 Consensus size: 82
63719880 GACCATTTGG
*
63719890 TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTAT-TAACCGACCAACTAAATAAAAATT
1 TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTATCGAACC-ACCAACTAAAT-AAAATT
63719954 AAAAGTCAACACAATTGTA
64 AAAAGTCAACACAATTGTA
* * *
63719973 TGTCATTAGTCAAAATTAAAACTTTATTAAAATTTATTATCGATCCACCAACTAAATAAAATTAG
1 TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTATCGAACCACCAACTAAATAAAATTAA
*
63720038 AATTCAACACAATTGTA
66 AAGTCAACACAATTGTA
63720055 T
1 T
63720056 TTAGGGTAAA
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
82 24 0.31
83 50 0.65
84 3 0.04
ACGTcount: A:0.47, C:0.14, G:0.06, T:0.33
Consensus pattern (82 bp):
TGTCATTAGTCAAAAATAAAACTTTATTAAAATTTATTATCGAACCACCAACTAAATAAAATTAA
AAGTCAACACAATTGTA
Found at i:63721058 original size:29 final size:29
Alignment explanation
Indices: 63721025--63721082 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
63721015 TCTGGAAAAC
63721025 ATTTTCTGAAATTTCCGGTGTTTGATTTG
1 ATTTTCTGAAATTTCCGGTGTTTGATTTG
63721054 ATTTTCTGAAATTTCCGGTGTTTGATTTG
1 ATTTTCTGAAATTTCCGGTGTTTGATTTG
63721083 TGGAAAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.10, G:0.21, T:0.52
Consensus pattern (29 bp):
ATTTTCTGAAATTTCCGGTGTTTGATTTG
Found at i:63723987 original size:20 final size:20
Alignment explanation
Indices: 63723958--63723996 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63723948 ATATTTTCTG
*
63723958 GTAAATCATTTTACAGAAAA
1 GTAAAACATTTTACAGAAAA
*
63723978 GTAAAACATTTTCCAGAAA
1 GTAAAACATTTTACAGAAA
63723997 TCATTTTACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
GTAAAACATTTTACAGAAAA
Found at i:63724003 original size:14 final size:14
Alignment explanation
Indices: 63723980--63724019 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
63723970 ACAGAAAAGT
*
63723980 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
63723994 AAATCATTTTACGG
1 AAAACATTTTACAG
63724008 AAAACATTTTAC
1 AAAACATTTTAC
63724020 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:63725690 original size:29 final size:30
Alignment explanation
Indices: 63725633--63725690 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
63725623 ATATCACATT
** *
63725633 TGGTACTTGTACTTTTTTAAATGTTTAATG
1 TGGTACTTGTACTTTTGAAAATGTCTAATG
63725663 TGGTACTTGTA-TTTTGAAAATGTCTAAT
1 TGGTACTTGTACTTTTGAAAATGTCTAAT
63725691 ATGAAAATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (30 bp):
TGGTACTTGTACTTTTGAAAATGTCTAATG
Found at i:63738358 original size:4 final size:4
Alignment explanation
Indices: 63738351--63738378 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
63738341 CATGTATCTG
63738351 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
63738379 CGGATATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:63739487 original size:43 final size:43
Alignment explanation
Indices: 63739426--63739518 Score: 177
Period size: 43 Copynumber: 2.2 Consensus size: 43
63739416 AGCTAAGTAA
63739426 AAACAGAATATTACCAGGGCAACAATGGAAACCACAGCATAGG
1 AAACAGAATATTACCAGGGCAACAATGGAAACCACAGCATAGG
63739469 AAACAGAATATTACCAGGGCAACAATGGAAACCACAGCATAGG
1 AAACAGAATATTACCAGGGCAACAATGGAAACCACAGCATAGG
*
63739512 AAGCAGA
1 AAACAGA
63739519 TAATAAATAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.11
Consensus pattern (43 bp):
AAACAGAATATTACCAGGGCAACAATGGAAACCACAGCATAGG
Found at i:63741590 original size:8 final size:8
Alignment explanation
Indices: 63741577--63741601 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63741567 TGTAACTTAC
63741577 ATATTTTG
1 ATATTTTG
63741585 ATATTTTG
1 ATATTTTG
63741593 ATATTTTG
1 ATATTTTG
63741601 A
1 A
63741602 AAACATTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (8 bp):
ATATTTTG
Found at i:63766409 original size:24 final size:24
Alignment explanation
Indices: 63766382--63766433 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
63766372 TTATATACAT
63766382 AAACATATGATGAGAACAACTAGG
1 AAACATATGATGAGAACAACTAGG
63766406 AAACATATGATGAGAACAACTAGG
1 AAACATATGATGAGAACAACTAGG
63766430 AAAC
1 AAAC
63766434 TGATATATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.52, C:0.13, G:0.19, T:0.15
Consensus pattern (24 bp):
AAACATATGATGAGAACAACTAGG
Found at i:63773647 original size:24 final size:22
Alignment explanation
Indices: 63773618--63773686 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 22
63773608 TCCAAATAAG
63773618 TAAAATAAAATAAAAATAAAGTAA
1 TAAAATAAAATAAAAATAAA--AA
*
63773642 TAAAATAAAGTAAAGAA-AAAAA
1 TAAAATAAAATAAA-AATAAAAA
63773664 T-AAATAATAATAAAAATAAAAA
1 TAAAATAA-AATAAAAATAAAAA
63773686 T
1 T
63773687 TGGGTTGCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
21 8 0.20
22 14 0.35
24 16 0.40
25 2 0.05
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.20
Consensus pattern (22 bp):
TAAAATAAAATAAAAATAAAAA
Found at i:63773648 original size:13 final size:13
Alignment explanation
Indices: 63773618--63773654 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
63773608 TCCAAATAAG
*
63773618 TAAAATAAAAT-A
1 TAAAATAAAGTAA
63773630 -AAAATAAAGTAA
1 TAAAATAAAGTAA
63773642 TAAAATAAAGTAA
1 TAAAATAAAGTAA
63773655 AGAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 9 0.41
12 1 0.05
13 12 0.55
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (13 bp):
TAAAATAAAGTAA
Found at i:63781220 original size:41 final size:41
Alignment explanation
Indices: 63781170--63781274 Score: 147
Period size: 41 Copynumber: 2.5 Consensus size: 41
63781160 ATACTCAGAT
* *
63781170 CTTTAGCGGCATTTTTGAAAAAGCATCGCTAATGCTCAGGG
1 CTTTAGCGGCATTTTTCAAAAAGCACCGCTAATGCTCAGGG
* * * *
63781211 CTTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCTCGGGG
1 CTTTAGCGGCATTTTTCAAAAAGCACCGCTAATGCTCAGGG
63781252 CTTTAGCGGCCATTTTTCAAAAA
1 CTTTAGCGG-CATTTTTCAAAAA
63781275 CATTTTATCT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 44 0.80
42 11 0.20
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (41 bp):
CTTTAGCGGCATTTTTCAAAAAGCACCGCTAATGCTCAGGG
Found at i:63781220 original size:70 final size:69
Alignment explanation
Indices: 63781093--63781226 Score: 162
Period size: 70 Copynumber: 1.9 Consensus size: 69
63781083 GCCACTAATG
* * * ** *
63781093 CTCAGATATTTAGCGGCGTTTTTTAAGAAGTGTCGCTAATGCTCAGATTAGTTGCGGCGTTTTTT
1 CTCAGATATTTAGCGGCATTTTTGAAAAAGCATCGCTAATGCTCAGATTA-TAGCGGCGTTTTTT
63781158 CAATA
65 CAATA
* *
63781163 CTCAGATCTTTAGCGGCATTTTTGAAAAAGCATCGCTAATGCTCAGGGCTT-TAGCGGCGTTTTT
1 CTCAGATATTTAGCGGCATTTTTGAAAAAGCATCGCTAATGCTCA--GATTATAGCGGCGTTTTT
63781227 CAAGAAGCGC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
70 51 0.94
72 3 0.06
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (69 bp):
CTCAGATATTTAGCGGCATTTTTGAAAAAGCATCGCTAATGCTCAGATTATAGCGGCGTTTTTTC
AATA
Found at i:63781526 original size:24 final size:21
Alignment explanation
Indices: 63781511--63781552 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
63781501 TAATTATTAT
63781511 TATAGTTTAGGGTTTAATATA
1 TATAGTTTAGGGTTTAATATA
*
63781532 TATAGTTTAGGGTAT-ATATA
1 TATAGTTTAGGGTTTAATATA
63781552 T
1 T
63781553 GGTTAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (21 bp):
TATAGTTTAGGGTTTAATATA
Found at i:63781875 original size:28 final size:29
Alignment explanation
Indices: 63781844--63781909 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
63781834 ATATATTAAA
*
63781844 TAAGGTTTAGGGGTT-AGTGATTAGTGA-T
1 TAAGGTTTAGGGGTTAAGAG-TTAGTGATT
63781872 TAAGGGTTT-GGGGTTAAGAGTTAGTGATT
1 TAA-GGTTTAGGGGTTAAGAGTTAGTGATT
*
63781901 TAGGGTTTA
1 TAAGGTTTA
63781910 TAGATTCGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
28 21 0.66
29 11 0.34
ACGTcount: A:0.24, C:0.00, G:0.36, T:0.39
Consensus pattern (29 bp):
TAAGGTTTAGGGGTTAAGAGTTAGTGATT
Found at i:63781879 original size:89 final size:89
Alignment explanation
Indices: 63781712--63781879 Score: 264
Period size: 89 Copynumber: 1.9 Consensus size: 89
63781702 CGGTGTCAGA
* * *
63781712 TTAGGGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATGTTTAGGGGTTAGGGGTT
1 TTAGAGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGGGGTTAGGGATT
**
63781777 AGGGATTTGGGGTTGGGTTAGGGT
66 AGGGATTAAGGGTTGGGTTAGGGT
* *
63781801 TTAGAGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAGGTTTAGGGGTTAGTGATT
1 TTAGAGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGGGGTTAGGGATT
*
63781866 AGTGATTAAGGGTT
66 AGGGATTAAGGGTT
63781880 TGGGGTTAAG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.45
Consensus pattern (89 bp):
TTAGAGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGGGGTTAGGGATT
AGGGATTAAGGGTTGGGTTAGGGT
Found at i:63783141 original size:40 final size:40
Alignment explanation
Indices: 63783097--63783177 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
63783087 CAACTTGGCT
63783097 CGCTTCACCAAACTGTTTCTGGTATCTAATCTTTTTACAA
1 CGCTTCACCAAACTGTTTCTGGTATCTAATCTTTTTACAA
63783137 CGCTTCACCAAACTGTTTCTGGTATCTAATCTTTTTACAA
1 CGCTTCACCAAACTGTTTCTGGTATCTAATCTTTTTACAA
63783177 C
1 C
63783178 TCATTCTTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.25, C:0.26, G:0.10, T:0.40
Consensus pattern (40 bp):
CGCTTCACCAAACTGTTTCTGGTATCTAATCTTTTTACAA
Found at i:63783524 original size:25 final size:24
Alignment explanation
Indices: 63783495--63783542 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
63783485 ATCATGGGAA
63783495 AAATGTG-AAGACATTGAAATGTATT
1 AAATGTGAAAGA-ATTGAAA-GTATT
63783520 AAATGTGAAAGAATTGAAAGTAT
1 AAATGTGAAAGAATTGAAAGTAT
63783543 AATATATGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.18
25 14 0.64
26 4 0.18
ACGTcount: A:0.48, C:0.02, G:0.21, T:0.29
Consensus pattern (24 bp):
AAATGTGAAAGAATTGAAAGTATT
Found at i:63787682 original size:22 final size:22
Alignment explanation
Indices: 63787657--63787701 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
63787647 TTACTTTTTG
63787657 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
63787679 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
63787701 T
1 T
63787702 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:63791459 original size:22 final size:22
Alignment explanation
Indices: 63791431--63791475 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
63791421 AGGGGGAGTG
63791431 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
63791453 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
63791475 T
1 T
63791476 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:63792190 original size:43 final size:42
Alignment explanation
Indices: 63792059--63792229 Score: 168
Period size: 43 Copynumber: 4.1 Consensus size: 42
63792049 TTTTTTTTTA
* * *
63792059 AAAAGTTATGTTTTTAGCTGCGTTTGTCA--AAAAGTGCCGCT
1 AAAAGTCATGTTTTTAGCGGCGTTTGT-AGTAAAAGCGCCGCT
* * * * * **
63792100 AAAAGTCATCTTTATAG-GGAGTTTGTGGTACAAGCGATGCT
1 AAAAGTCATGTTTTTAGCGGCGTTTGTAGTAAAAGCGCCGCT
* * *
63792141 TAAAGTCATGTTCTTTAGCGGCGTTTATAGTAAAAGTGCCGCT
1 AAAAGTCATGTT-TTTAGCGGCGTTTGTAGTAAAAGCGCCGCT
*
63792184 AAAAGTCATGTTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGCT
1 AAAAGTCATGTT-TTTAGCGGCGTTTGTAGTAAAAGCGCCGCT
63792227 AAA
1 AAA
63792230 TACCTAAAAA
Statistics
Matches: 102, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
40 7 0.07
41 32 0.31
42 4 0.04
43 59 0.58
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (42 bp):
AAAAGTCATGTTTTTAGCGGCGTTTGTAGTAAAAGCGCCGCT
Found at i:63798030 original size:29 final size:30
Alignment explanation
Indices: 63797983--63798040 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
63797973 TTAATTTAAC
** *
63797983 GTGCAATTATGTACATGAA-CTGTAATTTG
1 GTGCAATTATACACATGAAGCTCTAATTTG
*
63798012 GTGCAATTATACACGTGAAGCTCTAATTT
1 GTGCAATTATACACATGAAGCTCTAATTT
63798041 TGGTTCAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (30 bp):
GTGCAATTATACACATGAAGCTCTAATTTG
Found at i:63805126 original size:3 final size:3
Alignment explanation
Indices: 63805118--63805154 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
63805108 GGAAAGAGTA
63805118 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
63805155 GTAAGTGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:63806545 original size:20 final size:20
Alignment explanation
Indices: 63806507--63806545 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63806497 TAAAACATTA
**
63806507 TGAGATTAAGAATTCATAGT
1 TGAGATTAAGAATAAATAGT
63806527 TGAGATTAAGAATAAATAG
1 TGAGATTAAGAATAAATAG
63806546 AAGTGCTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.21, T:0.31
Consensus pattern (20 bp):
TGAGATTAAGAATAAATAGT
Found at i:63808795 original size:8 final size:8
Alignment explanation
Indices: 63808782--63808809 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
63808772 ATCCTAAAGC
63808782 CCAATGAA
1 CCAATGAA
63808790 CCAATGAA
1 CCAATGAA
63808798 CCAATGAA
1 CCAATGAA
63808806 CCAA
1 CCAA
63808810 ACCCTAACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.29, G:0.11, T:0.11
Consensus pattern (8 bp):
CCAATGAA
Found at i:63809774 original size:3 final size:3
Alignment explanation
Indices: 63809748--63809801 Score: 65
Period size: 3 Copynumber: 18.3 Consensus size: 3
63809738 AATATACTGG
* * * *
63809748 TTA TAA TTA TTA TAA TTA TAA TTA TTA TTA TTA TCA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
63809795 TTA TTA T
1 TTA TTA T
63809802 ACTTACATAT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:63810323 original size:9 final size:9
Alignment explanation
Indices: 63810309--63810375 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
63810299 TTTGGTTAAA
*
63810309 AATTAATCG
1 AATTAACCG
63810318 AATTAACCG
1 AATTAACCG
*
63810327 AATTACCCG
1 AATTAACCG
63810336 AATTAACCG
1 AATTAACCG
* *
63810345 GATTACCCG
1 AATTAACCG
*
63810354 AATTACCCG
1 AATTAACCG
63810363 AATTAACCG
1 AATTAACCG
63810372 AATT
1 AATT
63810376 GAATCACTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:63810349 original size:27 final size:27
Alignment explanation
Indices: 63810309--63810375 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
63810299 TTTGGTTAAA
*
63810309 AATTAATCGAATTAACCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
* *
63810336 AATTAACCGGATTACCCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
63810363 AATTAACCGAATT
1 AATTAACCGAATT
63810376 GAATCACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTACCCG
Found at i:63810512 original size:18 final size:18
Alignment explanation
Indices: 63810472--63810515 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
63810462 AATTTTTATG
**
63810472 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
63810490 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
63810508 CTTGGGTT
1 ATTGGGTT
63810516 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:63814603 original size:18 final size:18
Alignment explanation
Indices: 63814499--63814604 Score: 61
Period size: 18 Copynumber: 5.6 Consensus size: 18
63814489 AAAAATTACA
* *
63814499 AAAAAAATTTCAAAAATC
1 AAAAAAATTTGAAAAATT
* **
63814517 AAAATAATTTTTAAAATCT
1 AAAAAAATTTGAAAAAT-T
* *
63814536 -AAAATATTTATAAAAAGTT
1 AAAAAAATTT-GAAAAA-TT
63814555 CAAAAAAATTCTGAAAAAATAT
1 -AAAAAAATT-TG-AAAAAT-T
**
63814577 AAAGGAATTTGAAAAATT
1 AAAAAAATTTGAAAAATT
63814595 AAAAAAATTT
1 AAAAAAATTT
63814605 CTTGAATAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
18 30 0.45
19 12 0.18
20 3 0.04
21 15 0.22
22 7 0.10
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (18 bp):
AAAAAAATTTGAAAAATT
Found at i:63814814 original size:25 final size:26
Alignment explanation
Indices: 63814784--63814832 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
63814774 TAACTCGAAT
63814784 AATTTCAC-TCAATTCGACT-GATTCG
1 AATTTCACTTC-ATTCGACTCGATTCG
63814809 AATTTCACTTCATTCGACTCGATT
1 AATTTCACTTCATTCGACTCGATT
63814833 TGAAAATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (26 bp):
AATTTCACTTCATTCGACTCGATTCG
Found at i:63819497 original size:18 final size:18
Alignment explanation
Indices: 63819476--63819510 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
63819466 CCAAAGTGAT
63819476 ATTTTAATATTT-TTAAAC
1 ATTTTAAT-TTTATTAAAC
63819494 ATTTTAATTTTATTAAA
1 ATTTTAATTTTATTAAA
63819511 TAAATTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTAATTTTATTAAAC
Found at i:63820097 original size:22 final size:22
Alignment explanation
Indices: 63820065--63820106 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
63820055 CACCATTAAA
*
63820065 ATAATAGAAAA-TAATATAATAT
1 ATAATAAAAAAGT-ATATAATAT
63820087 ATAATAAAAAAGTATATAAT
1 ATAATAAAAAAGTATATAAT
63820107 TTACTATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (22 bp):
ATAATAAAAAAGTATATAATAT
Found at i:63821664 original size:14 final size:14
Alignment explanation
Indices: 63821645--63821682 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
63821635 TGTAATTTTT
63821645 ATATATATATATAC
1 ATATATATATATAC
*
63821659 ATATATATACATAC
1 ATATATATATATAC
*
63821673 TTATATATAT
1 ATATATATAT
63821683 TTTATATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (14 bp):
ATATATATATATAC
Found at i:63821701 original size:67 final size:67
Alignment explanation
Indices: 63821641--63821777 Score: 168
Period size: 67 Copynumber: 2.0 Consensus size: 67
63821631 TTTTTGTAAT
* * * *
63821641 TTTTATATATATATATACATATATATACATACTTATATATA-TTTTATATTTTATAAATTTTATA
1 TTTT-TATATACATATACATATATATACATACTTACATAAACTTTTATATTTAAT-AATTTTATA
63821705 TACA
64 TACA
* * * *
63821709 TTTTTATATACATATACGTGTATATCCATACTTACATAAACTTTTATATTTAATAATTTTGAAAT
1 TTTTTATATACATATACATATATATACATACTTACATAAACTTTTATATTTAATAATTTT-ATAT
63821774 ACA
65 ACA
63821777 T
1 T
63821778 ATATACATTC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 36 0.61
68 23 0.39
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (67 bp):
TTTTTATATACATATACATATATATACATACTTACATAAACTTTTATATTTAATAATTTTATATA
CA
Found at i:63825227 original size:9 final size:9
Alignment explanation
Indices: 63825213--63825253 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
63825203 GAGTTCAGAC
63825213 TCAAAAAAA
1 TCAAAAAAA
63825222 TCAAAAAAA
1 TCAAAAAAA
63825231 TC-AAAAAA
1 TCAAAAAAA
*
63825239 TAAAAAAAAA
1 T-CAAAAAAA
63825249 TCAAA
1 TCAAA
63825254 GTCAAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 7 0.25
9 14 0.50
10 7 0.25
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAAAA
Found at i:63826114 original size:7 final size:8
Alignment explanation
Indices: 63826095--63826123 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
63826085 TTTGAGTCAA
63826095 AAAAAATG
1 AAAAAATG
63826103 AAAAAATG
1 AAAAAATG
63826111 AAAAAATG
1 AAAAAATG
63826119 AAAAA
1 AAAAA
63826124 GTAAAAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:63826130 original size:16 final size:16
Alignment explanation
Indices: 63826094--63826130 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
63826084 CTTTGAGTCA
63826094 AAAAAAATGAAAAAAT
1 AAAAAAATGAAAAAAT
* *
63826110 GAAAAAATGAAAAAGT
1 AAAAAAATGAAAAAAT
63826126 AAAAA
1 AAAAA
63826131 TGGAGAGGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (16 bp):
AAAAAAATGAAAAAAT
Found at i:63827370 original size:45 final size:45
Alignment explanation
Indices: 63827321--63827672 Score: 236
Period size: 45 Copynumber: 7.9 Consensus size: 45
63827311 TGAAGACATC
* *
63827321 AGATCTTGCTTTCCTGTACTGACTGCGAAGCAGATCAAAGACAAA
1 AGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACAAA
* * * * * **
63827366 AGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACATC
1 AGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACAAA
* *
63827411 AGATCTTGCTTTCCTGTACTGACTGCGAAGCAGATCAAAGACAAA
1 AGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACAAA
* * * *
63827456 AGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACA
1 AGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACAAA
* * ** * * * **
63827501 A-ACCTTGCCTCTCTCGGTTGTGA-TG-G-AGCTGGTTGAAGACAAA
1 AGATCTTGCCT-TC-CTGTACTGACAGCGAAGCAGATCAAAGACAAA
* * * * * *
63827544 AGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACA
1 AGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACAAA
* * ** * **
63827589 A-ACCTTGCCTCTCTCGGTTGTGA-TG-G-AGCTAG-TTGAAGACAAA
1 AGATCTTGCCT-TC-CTGTACTGACAGCGAAGC-AGATCAAAGACAAA
* * *
63827632 AGATCTTGTCTTCCTGTATTGACAGCGAAGCAGGTCAAAGA
1 AGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGA
63827673 TACAAACCTT
Statistics
Matches: 236, Mismatches: 57, Indels: 28
0.74 0.18 0.09
Matches are distributed among these distances:
42 11 0.05
43 34 0.14
44 39 0.17
45 141 0.60
46 11 0.05
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (45 bp):
AGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACAAA
Found at i:63827565 original size:88 final size:88
Alignment explanation
Indices: 63827358--63829003 Score: 2520
Period size: 88 Copynumber: 18.7 Consensus size: 88
63827348 AAGCAGATCA
* * * *
63827358 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACATCAGATCTTG-CTT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACA-CAAACCTTGCCTC
* ** * * **
63827422 TC-CTGTACTGACTGCGAAGCAGATCA
65 TCTCGGTTGTGA-TG-G-AGCTGGTTG
*
63827448 AAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63827513 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
*
63827536 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
*
63827601 CTCGGTTGTGATGGAGCTAGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
* * * *
63827624 AAGACAAAAGATCTTGTCTTCCTGTATTGACAGCGAAGCAGGTCAAAGATACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
* *
63827689 CTCAGTTGT-AGCGGAGCTGGTTG
66 CTCGGTTGTGA-TGGAGCTGGTTG
*
63827712 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCAAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63827777 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
* * * **
63827800 AAGATAAAAGATCTTGTCTTCCTGCATTAACAGCGAAGCAGGTCGAAGACTTAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63827865 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
*
63827888 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
* * *
63827953 CTCAGTTGT-AGCGGAGCTAGTTG
66 CTCGGTTGTGA-TGGAGCTGGTTG
* * * *
63827976 AAGACAACAGATCTTGCCCTCCTGTATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
* *
63828041 TTCGGTTGTGATAGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
* * *
63828064 AAGACAAAAGATCTTGCATTCCTGCATTAACAGCGAAGCAGGTCGAAGACACAAACCTTACCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63828129 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
63828152 AAGACAAAAGA--TTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
*
63828215 CTCGGTTGTGATGGAGCTAGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
63828238 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63828303 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
* *
63828326 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
* *
63828391 CTCAGTTGT-AGCGGAGCTGGTTG
66 CTCGGTTGTGA-TGGAGCTGGTTG
*
63828414 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAAGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
*
63828479 CTCAGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
* *
63828502 AAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63828567 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
*
63828590 AAGACAAAAGA--TTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACGCAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63828653 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
63828676 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
*
63828741 CTCGGTTGTGGTGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
* * * **
63828764 AAGACAACAGATCTTTCTTTCCTGCATTGACAGCGAAGCAGGTCGAAGAGGCAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63828829 CTCGGTTGTGATGGAGCTGGTTG
66 CTCGGTTGTGATGGAGCTGGTTG
* * * *
63828852 AAGACAATAGATCTTGCCTTCTTGCATTGACAGCGAAGCAGGTCGAAGACACAAATCTTACCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
* **
63828917 CTCGGTTGT-AGTGAAGCTGGTCA
66 CTCGGTTGTGA-TGGAGCTGGTTG
* ** * * * * *
63828940 AAGATAGCAGATCTTGCCTTCTTGCATTGACAACGAAGCAGATCGAAGATACAAGCCTTGCCTC
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTC
63829004 CCTAAGCGGT
Statistics
Matches: 1431, Mismatches: 112, Indels: 28
0.91 0.07 0.02
Matches are distributed among these distances:
86 166 0.12
87 4 0.00
88 1189 0.83
89 11 0.01
90 55 0.04
91 6 0.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (88 bp):
AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
CTCGGTTGTGATGGAGCTGGTTG
Found at i:63828358 original size:438 final size:438
Alignment explanation
Indices: 63827358--63829003 Score: 2530
Period size: 438 Copynumber: 3.7 Consensus size: 438
63827348 AAGCAGATCA
* * * *
63827358 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACATCAGATCTTG-CTT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACA-CAAACCTTGCCTC
* ** * * ** *
63827422 TC-CTGTACTGACTGCGAAGCAGATCAAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAG
65 TCTCGGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAG
* * *
63827486 CAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTT
127 CAGGTCAAAGACACAAACCTTGCCTCTCTCAGTTGTGACGGAGCTGGTTGAAGACAAAAGATCTT
*
63827551 GCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGA
192 GCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGA
* * * * * *
63827616 GCTAGTTGAAGACAAAAGATCTTGTCTTCCTGTATTGACAGCGAAGCAGGTCAAAGATACAAACC
257 GCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACC
* *
63827681 TTGCCTCTCTCAGTTGT-AGCGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAG
322 TTGCCTCTCTCGGTTGTGA-TGGAGCTGGTTGAAGACAAAAGA--TTGCCTTCCTGCATTGACAG
*
63827745 CAAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTG
384 CGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTG
* * * **
63827800 AAGATAAAAGATCTTGTCTTCCTGCATTAACAGCGAAGCAGGTCGAAGACTTAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
63827865 CTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGG
66 CTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGG
* *
63827930 TCAAAGACACAAACCTTGCCTCTCTCAGTTGT-AGCGGAGCTAGTTGAAGACAACAGATCTTGCC
131 TCAAAGACACAAACCTTGCCTCTCTCAGTTGTGA-CGGAGCTGGTTGAAGACAAAAGATCTTGCC
* * * * *
63827994 CTCCTGTATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCT
195 TTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCT
* * * *
63828059 GGTTGAAGACAAAAGATCTTGCATTCCTGCATTAACAGCGAAGCAGGTCGAAGACACAAACCTTA
260 GGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTG
63828124 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATTGCCTTCCTGCATTGACAGCGAAGC
325 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATTGCCTTCCTGCATTGACAGCGAAGC
*
63828189 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTAGTTG
390 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTG
63828238 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
*
63828303 CTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGA
66 CTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGG
63828368 TCAAAGACACAAACCTTGCCTCTCTCAGTTGT-AGCGGAGCTGGTTGAAGACAAAAGATCTTGCC
131 TCAAAGACACAAACCTTGCCTCTCTCAGTTGTGA-CGGAGCTGGTTGAAGACAAAAGATCTTGCC
* *
63828432 TTCCTGCATTGACAGCGAAGCAAGTCGAAGACACAAACCTTGCCTCTCTCAGTTGTGATGGAGCT
195 TTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCT
*
63828497 GGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTG
260 GGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTG
63828562 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATTGCCTTCCTGCATTGACAGCGAAGC
325 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATTGCCTTCCTGCATTGACAGCGAAGC
*
63828627 AGGTCGAAGACGCAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTG
390 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTG
63828676 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
1 AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
* * * *
63828741 CTCGGTTGTGGTGGAGCTGGTTGAAGACAACAGATCTTTCTTTCCTGCATTGACAGCGAAGCAGG
66 CTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGG
* ** * * *
63828806 TCGAAGAGGCAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAATAGATCTTGCCT
131 TCAAAGACACAAACCTTGCCTCTCTCAGTTGTGACGGAGCTGGTTGAAGACAAAAGATCTTGCCT
* * * *
63828871 TCTTGCATTGACAGCGAAGCAGGTCGAAGACACAAATCTTACCTCTCTCGGTTGT-AGTGAAGCT
196 TCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGA-TGGAGCT
** * ** * * * *
63828935 GGTCAAAGATAGCAGATCTTGCCTTCTTGCATTGACAACGAAGCAGATCGAAGATACAAGCCTTG
260 GGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTG
63829000 CCTC
325 CCTC
63829004 CCTAAGCGGT
Statistics
Matches: 1113, Mismatches: 85, Indels: 16
0.92 0.07 0.01
Matches are distributed among these distances:
437 1 0.00
438 788 0.71
439 2 0.00
440 256 0.23
441 8 0.01
442 52 0.05
443 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (438 bp):
AAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
CTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGG
TCAAAGACACAAACCTTGCCTCTCTCAGTTGTGACGGAGCTGGTTGAAGACAAAAGATCTTGCCT
TCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTG
GTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGC
CTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATTGCCTTCCTGCATTGACAGCGAAGCA
GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTG
Found at i:63830808 original size:23 final size:24
Alignment explanation
Indices: 63830763--63830809 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
63830753 CATGTGCATG
*
63830763 CGTACATTTTTTTTATATATTATA
1 CGTACATTTTTTGTATATATTATA
63830787 CGTACATATTTTTGTA-AT-TTATA
1 CGTACAT-TTTTTGTATATATTATA
63830810 TATATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 9 0.43
25 7 0.33
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (24 bp):
CGTACATTTTTTGTATATATTATA
Found at i:63830825 original size:14 final size:14
Alignment explanation
Indices: 63830806--63830842 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
63830796 TTTTGTAATT
63830806 TATATATATATACA
1 TATATATATATACA
* *
63830820 TATATATACATACT
1 TATATATATATACA
63830834 TATATATAT
1 TATATATAT
63830843 TTTATATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (14 bp):
TATATATATATACA
Found at i:63830874 original size:65 final size:67
Alignment explanation
Indices: 63830804--63830935 Score: 178
Period size: 65 Copynumber: 2.0 Consensus size: 67
63830794 ATTTTTGTAA
* * * * *
63830804 TTTATATATATATACATATATATACATACTTATATATA-TTTTATATTTTATAATTTT-ATATAC
1 TTTATATACATATACATATATATACATACTTACATAAACTTTTATATTTAATAATTTTGAAATAC
63830867 AT
66 AT
* * *
63830869 TTTATATACATATACGTGTATATCCATACTTACATAAACTTTTATATTTAATAATTTTGAAATAC
1 TTTATATACATATACATATATATACATACTTACATAAACTTTTATATTTAATAATTTTGAAATAC
63830934 AT
66 AT
63830936 ATATACATTC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 32 0.56
66 18 0.32
67 7 0.12
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.49
Consensus pattern (67 bp):
TTTATATACATATACATATATATACATACTTACATAAACTTTTATATTTAATAATTTTGAAATAC
AT
Found at i:63831014 original size:17 final size:17
Alignment explanation
Indices: 63830992--63831039 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
63830982 TTTTATAACG
*
63830992 TATATACTTATATTATA
1 TATATACTTATATAATA
* * *
63831009 TATATATTTTTATAATC
1 TATATACTTATATAATA
*
63831026 TATATACCTATATA
1 TATATACTTATATA
63831040 TGTAAATATT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATACTTATATAATA
Found at i:63833231 original size:54 final size:55
Alignment explanation
Indices: 63833145--63833257 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 55
63833135 TTTTTTTTTC
* *
63833145 TCTT-AATTCACGAAAATGACCAAATGAGTGAT-AAAGGGGGATGAATCAAAAGT
1 TCTTCAATTCACGAAAATGACCAAATGAGTGATAAAAGGGGAATAAATCAAAAGT
63833198 TCTTCAATTCACGAAAATGACCAAATGAGTGATAAAAGGGGAATAAATCAAAAGT
1 TCTTCAATTCACGAAAATGACCAAATGAGTGATAAAAGGGGAATAAATCAAAAGT
63833253 TCTTC
1 TCTTC
63833258 GCTGATAATA
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
53 4 0.07
54 28 0.50
55 24 0.43
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.24
Consensus pattern (55 bp):
TCTTCAATTCACGAAAATGACCAAATGAGTGATAAAAGGGGAATAAATCAAAAGT
Found at i:63834186 original size:18 final size:18
Alignment explanation
Indices: 63834163--63834199 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
63834153 TTAGTATTAC
63834163 ATAGACACTAATACAATT
1 ATAGACACTAATACAATT
63834181 ATAGACACTAATACAATT
1 ATAGACACTAATACAATT
63834199 A
1 A
63834200 GATAGGCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.27
Consensus pattern (18 bp):
ATAGACACTAATACAATT
Found at i:63837839 original size:18 final size:18
Alignment explanation
Indices: 63837818--63837857 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
63837808 AAAAATTCCA
*
63837818 AAAATC-AAAATAATTTTT
1 AAAATCTAAAAT-ATTTAT
63837836 AAAATCTAAAATATTTAT
1 AAAATCTAAAATATTTAT
63837854 AAAA
1 AAAA
63837858 AATTCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATCTAAAATATTTAT
Found at i:63838187 original size:26 final size:26
Alignment explanation
Indices: 63838147--63838196 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
63838137 TAACTCGAAT
* *
63838147 AATTTCACTCAATTCGACTTGATTCG
1 AATTTCACTCAATTCAACTCGATTCG
63838173 AATTTCACTTC-ATTCAACTCGATT
1 AATTTCAC-TCAATTCAACTCGATT
63838197 TGAAAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (26 bp):
AATTTCACTCAATTCAACTCGATTCG
Found at i:63843758 original size:16 final size:14
Alignment explanation
Indices: 63843718--63843750 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
63843708 TAAGCCAGCC
*
63843718 AAATTCTAAAAAAA
1 AAATTCTCAAAAAA
63843732 AAATTCTCAAAAAA
1 AAATTCTCAAAAAA
63843746 AAATT
1 AAATT
63843751 ATTACAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATTCTCAAAAAA
Found at i:63844828 original size:51 final size:52
Alignment explanation
Indices: 63844760--63844901 Score: 214
Period size: 51 Copynumber: 2.7 Consensus size: 52
63844750 ATTACCAAGT
*
63844760 GAGTGATAAAAGGGGAATGAATCAAAAGTTCTTCAATTCACGGAAATGACC-
1 GAGTGATAAAAGGGGAATGAATCAAAAGTTCTTCAATTCACGAAAATGACCA
63844811 GAGTGATAAAAGGGGAATGAATCAAAAGTTCTTCAATTCACGAAAATGACCAAAAA
1 GAGTGATAAAAGGGGAATGAATCAAAAGTTCTTCAATTCACGAAAATGACC----A
*
63844867 TGAGTGACAAAAGGGGAATGAATCAAAAGTTCTTC
1 -GAGTGATAAAAGGGGAATGAATCAAAAGTTCTTC
63844902 GCTGATAATA
Statistics
Matches: 83, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
51 50 0.60
57 33 0.40
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.21
Consensus pattern (52 bp):
GAGTGATAAAAGGGGAATGAATCAAAAGTTCTTCAATTCACGAAAATGACCA
Found at i:63846098 original size:46 final size:46
Alignment explanation
Indices: 63846002--63846155 Score: 220
Period size: 46 Copynumber: 3.3 Consensus size: 46
63845992 GAACAGCAGT
* * * * *
63846002 AACAATATTCGGACAGCATTGATTTGCTAAAAAATGGACAACATTTA
1 AACAACATTCGGACAGCA-TAATATGCTCAAAAATGGACAGCATTTA
63846049 AACAACATTCGGACAGCATAATATGCTCAAAAATGGACAGCATTTA
1 AACAACATTCGGACAGCATAATATGCTCAAAAATGGACAGCATTTA
* *
63846095 AACAACATTC-GAGCAACATAATATGCTCAAAAATGGACAGCATTTC
1 AACAACATTCGGA-CAGCATAATATGCTCAAAAATGGACAGCATTTA
63846141 AACAACATTCGGACA
1 AACAACATTCGGACA
63846156 ACATTTTATC
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
45 2 0.02
46 77 0.79
47 19 0.19
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.23
Consensus pattern (46 bp):
AACAACATTCGGACAGCATAATATGCTCAAAAATGGACAGCATTTA
Found at i:63849965 original size:43 final size:42
Alignment explanation
Indices: 63849904--63850013 Score: 150
Period size: 42 Copynumber: 2.6 Consensus size: 42
63849894 CAATGAGAAC
* * *
63849904 GTCCCAAACGTGGTCTTACATGTAATCAAATAC-CGATGTCACT
1 GTCCCAAACATGGTCTTACACGTAATC--ATACACGATGTCAAT
*
63849947 GTCCCAAACATGGTCTTACACGAAATCATACACGATGTCAAT
1 GTCCCAAACATGGTCTTACACGTAATCATACACGATGTCAAT
*
63849989 GTCCCAGACATGGTCTTACACGTAA
1 GTCCCAAACATGGTCTTACACGTAA
63850014 ATCTCAAATC
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 4 0.07
42 32 0.53
43 24 0.40
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
GTCCCAAACATGGTCTTACACGTAATCATACACGATGTCAAT
Found at i:63850000 original size:42 final size:42
Alignment explanation
Indices: 63849904--63850060 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
63849894 CAATGAGAAC
* * * *
63849904 GTCCCAAACGTGGTCTTACATGTAATCAAATAC-CGATGTCACT
1 GTCCCAAACATGGTCTTACACGAAATC--ATACACGATGTCAAT
63849947 GTCCCAAACATGGTCTTACACGAAATCATACACGATGTCAAT
1 GTCCCAAACATGGTCTTACACGAAATCATACACGATGTCAAT
* * * *
63849989 GTCCCAGACATGGTCTTACACGTAAATC-TCAAATCGATGCCAAC
1 GTCCCAAACATGGTCTTACACG-AAATCAT-ACA-CGATGTCAAT
* * *
63850033 GTCCCAGACGTGATCTTACACGAAATCA
1 GTCCCAAACATGGTCTTACACGAAATCA
63850061 CATATCGAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
41 4 0.04
42 31 0.31
43 36 0.36
44 28 0.28
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
GTCCCAAACATGGTCTTACACGAAATCATACACGATGTCAAT
Found at i:63850050 original size:44 final size:43
Alignment explanation
Indices: 63849947--63850068 Score: 138
Period size: 44 Copynumber: 2.8 Consensus size: 43
63849937 CGATGTCACT
* * * * * *
63849947 GTCCCAAACATGGTCTTACACGAAATCATACA-CGATGTCAAT
1 GTCCCAGACATGATCTTACACGAAATCACAAATCGATGCCAAC
* *
63849989 GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAAC
1 GTCCCAGACATGATCTTACACG-AAATCACAAATCGATGCCAAC
* *
63850033 GTCCCAGACGTGATCTTACACGAAATCACATATCGA
1 GTCCCAGACATGATCTTACACGAAATCACAAATCGA
63850069 AATCCTAGGT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 21 0.31
43 19 0.28
44 28 0.41
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
GTCCCAGACATGATCTTACACGAAATCACAAATCGATGCCAAC
Found at i:63851311 original size:13 final size:13
Alignment explanation
Indices: 63851293--63851318 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63851283 TCATATGCTC
63851293 AAAATGATTGAGT
1 AAAATGATTGAGT
63851306 AAAATGATTGAGT
1 AAAATGATTGAGT
63851319 GATGAATGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (13 bp):
AAAATGATTGAGT
Found at i:63855804 original size:17 final size:17
Alignment explanation
Indices: 63855782--63855815 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
63855772 TCACACACTT
63855782 AAATAATAGG-ATAGATA
1 AAATAAT-GGTATAGATA
63855799 AAATAATGGTATAGATA
1 AAATAATGGTATAGATA
63855816 TACACAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (17 bp):
AAATAATGGTATAGATA
Found at i:63859946 original size:15 final size:15
Alignment explanation
Indices: 63859922--63859951 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63859912 GGATTGGTTT
*
63859922 ACAATTTTAAACTTA
1 ACAATGTTAAACTTA
63859937 ACAATGTTAAACTTA
1 ACAATGTTAAACTTA
63859952 GGTACTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (15 bp):
ACAATGTTAAACTTA
Found at i:63860884 original size:5 final size:5
Alignment explanation
Indices: 63860874--63860898 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
63860864 GTAGTTATAG
63860874 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
63860899 ATGCGTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:63861160 original size:22 final size:20
Alignment explanation
Indices: 63861133--63861191 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 20
63861123 AATCCATTTT
*
63861133 TAAATATATAAAGAGTAATAAA
1 TAAATAAATAAA-A-TAATAAA
63861155 TAAATAAATAAAATAAT-AA
1 TAAATAAATAAAATAATAAA
63861174 T-AAT-AATAATAATAATAA
1 TAAATAAATAA-AATAATAA
63861192 TGATAAAGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
17 5 0.15
18 9 0.26
19 4 0.12
20 4 0.12
21 1 0.03
22 11 0.32
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (20 bp):
TAAATAAATAAAATAATAAA
Found at i:63861170 original size:9 final size:10
Alignment explanation
Indices: 63861148--63861198 Score: 51
Period size: 9 Copynumber: 5.7 Consensus size: 10
63861138 ATATAAAGAG
63861148 TAATAAAT-A
1 TAATAAATAA
63861157 -AATAAATAA
1 TAATAAATAA
63861166 -AAT-AATAA
1 TAATAAATAA
63861174 TAAT-AATAA
1 TAATAAATAA
63861183 TAAT-AATAA
1 TAATAAATAA
*
63861192 TGATAAA
1 TAATAAA
63861199 GGCATAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
8 12 0.32
9 24 0.63
10 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (10 bp):
TAATAAATAA
Found at i:63861174 original size:3 final size:3
Alignment explanation
Indices: 63861161--63861197 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
63861151 TAAATAAATA
*
63861161 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63861198 AGGCATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:63861291 original size:4 final size:4
Alignment explanation
Indices: 63861229--63861319 Score: 55
Period size: 4 Copynumber: 22.8 Consensus size: 4
63861219 AATAAAAAGA
* * * * * *
63861229 AAAT AAAA AAAT -TAT AAATT AAAA AAAT AAGT -AAT -AAT AGAT AAGT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
63861275 AAAT AAGT AAAT AAAT AAAT AAAT AAA- AGAATT AAAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AA-T -AAAT AAAT AAA
63861320 GGACTTAATT
Statistics
Matches: 66, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
3 8 0.12
4 50 0.76
5 5 0.08
6 2 0.03
7 1 0.02
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:63869631 original size:9 final size:9
Alignment explanation
Indices: 63869617--63869648 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
63869607 TTTTGGTTAA
63869617 GAATTAACC
1 GAATTAACC
*
63869626 GAATTACCC
1 GAATTAACC
63869635 GAATTAACC
1 GAATTAACC
63869644 GAATT
1 GAATT
63869649 GAATCACTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (9 bp):
GAATTAACC
Found at i:63869799 original size:29 final size:28
Alignment explanation
Indices: 63869746--63869801 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
63869736 ATTTTTATGA
* *
63869746 TTGGGTTGGGTTGGGTTGGGTTGAATAC
1 TTGGGTTGGATTGGGTTAGGTTGAATAC
63869774 TTGGGTTTGGATTGGGTTTAGG-TGAATA
1 TTGGG-TTGGATTGGG-TTAGGTTGAATA
63869802 GTGGGCCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 15 0.62
30 4 0.17
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (28 bp):
TTGGGTTGGATTGGGTTAGGTTGAATAC
Done.