Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 215 of 216
Found at i:66941518 original size:21 final size:21
Alignment explanation
Indices: 66941476--66941518 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
66941466 TTCACTATAC
*
66941476 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
66941497 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
66941518 A
1 A
66941519 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:66942628 original size:39 final size:37
Alignment explanation
Indices: 66942561--66942653 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
66942551 ACCAGAATGG
* *
66942561 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
66942600 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
66942637 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
66942654 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:66943017 original size:3 final size:3
Alignment explanation
Indices: 66943009--66943056 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
66942999 ATTCCCACTC
* * * *
66943009 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
66943057 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:66943057 original size:18 final size:18
Alignment explanation
Indices: 66943010--66943058 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
66943000 TTCCCACTCA
*
66943010 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
66943028 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
66943046 TAATATTAATACT
1 TAATAATAATACT
66943059 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:66943058 original size:12 final size:12
Alignment explanation
Indices: 66943009--66943056 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
66942999 ATTCCCACTC
*
66943009 ATAATAATAATA
1 ATAATACTAATA
66943021 ATAATACTAATA
1 ATAATACTAATA
66943033 ATAATACTAATA
1 ATAATACTAATA
* *
66943045 CTAATATTAATA
1 ATAATACTAATA
66943057 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:66944116 original size:21 final size:21
Alignment explanation
Indices: 66944092--66944134 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
66944082 AATAATAACT
66944092 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
66944113 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
66944134 A
1 A
66944135 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:66951512 original size:435 final size:435
Alignment explanation
Indices: 66950702--66951574 Score: 1746
Period size: 435 Copynumber: 2.0 Consensus size: 435
66950692 TATTTTAATG
66950702 AAAATTTTGAAATTTGGTGGAAAAATGATAGGTGAATGCATATGAGAGATCCCTCTATTATAGGA
1 AAAATTTTGAAATTTGGTGGAAAAATGATAGGTGAATGCATATGAGAGATCCCTCTATTATAGGA
66950767 ATTTAATCAAATTAGTCCCCTACTATTAAAAAAATCAAATAAGATCAAATTAGAATAGAGTTAAT
66 ATTTAATCAAATTAGTCCCCTACTATTAAAAAAATCAAATAAGATCAAATTAGAATAGAGTTAAT
66950832 ATTTATTGTTTAAAAAATATTATTTTCTGTTTAACAAAGTTACTATTTTTAAACTTTTGATTGTT
131 ATTTATTGTTTAAAAAATATTATTTTCTGTTTAACAAAGTTACTATTTTTAAACTTTTGATTGTT
66950897 CTGCAAACAAAATCTTTTGTTTACAATTGAAAAAATAATAACTTTCAAGACAATTTTTATGCGTT
196 CTGCAAACAAAATCTTTTGTTTACAATTGAAAAAATAATAACTTTCAAGACAATTTTTATGCGTT
66950962 GACTCTATTAAAATATAGATTGTTTTTTTATTTTCTTAGTCTCCGATTAATCTAATTCAATCCCT
261 GACTCTATTAAAATATAGATTGTTTTTTTATTTTCTTAGTCTCCGATTAATCTAATTCAATCCCT
66951027 ATAATACAGACATTTTAACCCAAAATTGTAGGTAGAGAGATGGTGCTCTCTGGTAAGTGTATAGT
326 ATAATACAGACATTTTAACCCAAAATTGTAGGTAGAGAGATGGTGCTCTCTGGTAAGTGTATAGT
66951092 TCATAGGTTAGGTGGAGTTTAGTTTAACCTAACCATGATATTTAT
391 TCATAGGTTAGGTGGAGTTTAGTTTAACCTAACCATGATATTTAT
66951137 AAAATTTTGAAATTTGGTGGAAAAATGATAGGTGAATGCATATGAGAGATCCCTCTATTATAGGA
1 AAAATTTTGAAATTTGGTGGAAAAATGATAGGTGAATGCATATGAGAGATCCCTCTATTATAGGA
66951202 ATTTAATCAAATTAGTCCCCTACTATTAAAAAAATCAAATAAGATCAAATTAGAATAGAGTTAAT
66 ATTTAATCAAATTAGTCCCCTACTATTAAAAAAATCAAATAAGATCAAATTAGAATAGAGTTAAT
66951267 ATTTATTGTTTAAAAAATATTATTTTCTGTTTAACAAAGTTACTATTTTTAAACTTTTGATTGTT
131 ATTTATTGTTTAAAAAATATTATTTTCTGTTTAACAAAGTTACTATTTTTAAACTTTTGATTGTT
66951332 CTGCAAACAAAATCTTTTGTTTACAATTGAAAAAATAATAACTTTCAAGACAATTTTTATGCGTT
196 CTGCAAACAAAATCTTTTGTTTACAATTGAAAAAATAATAACTTTCAAGACAATTTTTATGCGTT
66951397 GACTCTATTAAAATATAGATTGTTTTTTTATTTTCTTAGTCTCCGATTAATCTAATTCAATCCCT
261 GACTCTATTAAAATATAGATTGTTTTTTTATTTTCTTAGTCTCCGATTAATCTAATTCAATCCCT
66951462 ATAATACAGACATTTTAACCCAAAATTGTAGGTAGAGAGATGGTGCTCTCTGGTAAGTGTATAGT
326 ATAATACAGACATTTTAACCCAAAATTGTAGGTAGAGAGATGGTGCTCTCTGGTAAGTGTATAGT
66951527 TCATAGGTTAGGTGGAGTTTAGTTTAACCTAACCATGATATTTAT
391 TCATAGGTTAGGTGGAGTTTAGTTTAACCTAACCATGATATTTAT
66951572 AAA
1 AAA
66951575 TACTAATGTC
Statistics
Matches: 438, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
435 438 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38
Consensus pattern (435 bp):
AAAATTTTGAAATTTGGTGGAAAAATGATAGGTGAATGCATATGAGAGATCCCTCTATTATAGGA
ATTTAATCAAATTAGTCCCCTACTATTAAAAAAATCAAATAAGATCAAATTAGAATAGAGTTAAT
ATTTATTGTTTAAAAAATATTATTTTCTGTTTAACAAAGTTACTATTTTTAAACTTTTGATTGTT
CTGCAAACAAAATCTTTTGTTTACAATTGAAAAAATAATAACTTTCAAGACAATTTTTATGCGTT
GACTCTATTAAAATATAGATTGTTTTTTTATTTTCTTAGTCTCCGATTAATCTAATTCAATCCCT
ATAATACAGACATTTTAACCCAAAATTGTAGGTAGAGAGATGGTGCTCTCTGGTAAGTGTATAGT
TCATAGGTTAGGTGGAGTTTAGTTTAACCTAACCATGATATTTAT
Found at i:66959031 original size:61 final size:61
Alignment explanation
Indices: 66958962--66959092 Score: 165
Period size: 61 Copynumber: 2.2 Consensus size: 61
66958952 TTTGATCCTA
* * ** *
66958962 AATT-TAAAAAATTCAACAAATTTAGTCCTTAATGTTTACAAAATTTGTCATTTTAGTTCG
1 AATTCTAAAAAATTCAACAAATTTAGCCCTCAACATTTACAAAATTTGTCAATTTAGTTCG
* * * * *
66959022 AATTCTAAAAAATTTAATAAATTTAGCCCTCAACATTTATAAAATTTTTCAATTTAGTTCT
1 AATTCTAAAAAATTCAACAAATTTAGCCCTCAACATTTACAAAATTTGTCAATTTAGTTCG
66959083 AATTCTAAAA
1 AATTCTAAAA
66959093 TTTCAAATAA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
60 4 0.07
61 56 0.93
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41
Consensus pattern (61 bp):
AATTCTAAAAAATTCAACAAATTTAGCCCTCAACATTTACAAAATTTGTCAATTTAGTTCG
Found at i:66964150 original size:14 final size:14
Alignment explanation
Indices: 66964131--66964157 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66964121 ACACGTTTTC
66964131 GTAATTATTTATAT
1 GTAATTATTTATAT
66964145 GTAATTATTTATA
1 GTAATTATTTATA
66964158 CGATTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (14 bp):
GTAATTATTTATAT
Found at i:66965280 original size:5 final size:5
Alignment explanation
Indices: 66965264--66965300 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
66965254 AAACTTTTTT
*
66965264 GGCCC AGGCCC GGCCC GGCCT GGCCC GGCCC GGCCC G
1 GGCCC -GGCCC GGCCC GGCCC GGCCC GGCCC GGCCC G
66965301 AATTATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.03, C:0.54, G:0.41, T:0.03
Consensus pattern (5 bp):
GGCCC
Found at i:66965888 original size:31 final size:31
Alignment explanation
Indices: 66965822--66965888 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
66965812 TTAGTCATTG
* * * * *
66965822 AACTTGACTATTGTTTCTATATTGAGGTCTG
1 AACTTGACAATTGTTTCTACATTGAAGCCTA
66965853 AACTTGACAATTGTTTCTACATTGAAGCCTA
1 AACTTGACAATTGTTTCTACATTGAAGCCTA
66965884 AACTT
1 AACTT
66965889 TACAGGTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (31 bp):
AACTTGACAATTGTTTCTACATTGAAGCCTA
Found at i:66967963 original size:348 final size:346
Alignment explanation
Indices: 66967273--66967967 Score: 1110
Period size: 348 Copynumber: 2.0 Consensus size: 346
66967263 AGACTAAAAT
66967273 GATAATTTGCCATTTTTGTGTGCGGGGTTAAGGTCCTTGGATATGTATTTGTAATTTAGAGTTGA
1 GATAATTTGCCATTTTTGTGTGCGGGGTTAAGGTCCTTGGATATGTATTTGTAATTTAGAGTTGA
* *
66967338 ATCGAGTCAGATCTCTAAAAGATAAACAAAGCTCTCTCAACATTGCTTTTCATTCCTAAAACTCA
66 ATCAAGTCAGATCTCTAAAAGAAAAACAAAGCTCTCTCAACATTGCTTTTCATTCCTAAAACTCA
* * * * *
66967403 AACTCGTTCAATTATTTTCAGCTATTTAAATATTTTGGTTTTTTTAACATAAATTTTGTTAATAG
131 AACTCGTTCAATCATTTTAAGCTATTTAAATATTTTAGTCTTTTTAACATAAATTCTGTTAATAG
*
66967468 GGACCATTGTTAGAAACCTACTTGTGTGATCTATAACTTTAGTATCCAAAAAGAAAACAAATCCT
196 GGACCATTATTAGAAACCTACTTGTGTGATCTATAACTTTAGTATCCAAAAAGAAAACAAATCCT
* *
66967533 TTAACTATCCTTTAAAAATAACCAAAAATAACACATGCTAAATTAAAATTCAATGTAATATCTCA
261 TTAACTATCCTTTAAAAAAAACCAAAAACAACACATGCTAAATTAAAATTCAATGTAATATCTCA
66967598 AAGTCATAAAATTAAAATAAA
326 AAGTCATAAAATTAAAATAAA
* *
66967619 GATAATTTGCCATTTTTGTGTG-GAGGGTTATGGTCCTTGGATATATGTGTTTGTAATTTAGAGT
1 GATAATTTGCCATTTTTGTGTGCG-GGGTTAAGGTCCTTGG--ATATGTATTTGTAATTTAGAGT
* *
66967683 TGAATCAAGTCAGATCTGTAAAAGAAAAACAAAGCTCTCTCAACCTTGCTTTTCATTCCTAAAAC
63 TGAATCAAGTCAGATCTCTAAAAGAAAAACAAAGCTCTCTCAACATTGCTTTTCATTCCTAAAAC
* *
66967748 TCAAACTCGTTCAATCATTTTAAGCTATTTAATTATTTTAG-CTTTTTAGGCATAAATTCTGTTA
128 TCAAACTCGTTCAATCATTTTAAGCTATTTAAATATTTTAGTCTTTTTA-ACATAAATTCTGTTA
* * *
66967812 ATAGGGACCATTAATTAGAAACCTCCTTGTGTGATCTATAATTTTAGTATCCAAAAA-ATAACAA
192 ATAGGGACCATT-ATTAGAAACCTACTTGTGTGATCTATAACTTTAGTATCCAAAAAGAAAACAA
*
66967876 ATCCTTTAACTATCCTTTAAAAAAAAACCAAAAACAGCACATGCTAAATTAAAATTC-ATGTAAT
256 ATCCTTTAACTATCCTTT-AAAAAAAACCAAAAACAACACATGCTAAATTAAAATTCAATGTAAT
* *
66967940 ATCTCAATGTCATAAAGTTAAAATAAA
320 ATCTCAAAGTCATAAAATTAAAATAAA
66967967 G
1 G
66967968 TTAAAAAGAA
Statistics
Matches: 321, Mismatches: 22, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
345 1 0.00
346 37 0.12
347 6 0.02
348 201 0.63
349 76 0.24
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (346 bp):
GATAATTTGCCATTTTTGTGTGCGGGGTTAAGGTCCTTGGATATGTATTTGTAATTTAGAGTTGA
ATCAAGTCAGATCTCTAAAAGAAAAACAAAGCTCTCTCAACATTGCTTTTCATTCCTAAAACTCA
AACTCGTTCAATCATTTTAAGCTATTTAAATATTTTAGTCTTTTTAACATAAATTCTGTTAATAG
GGACCATTATTAGAAACCTACTTGTGTGATCTATAACTTTAGTATCCAAAAAGAAAACAAATCCT
TTAACTATCCTTTAAAAAAAACCAAAAACAACACATGCTAAATTAAAATTCAATGTAATATCTCA
AAGTCATAAAATTAAAATAAA
Found at i:66969619 original size:19 final size:19
Alignment explanation
Indices: 66969595--66969632 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
66969585 AACCTTCTAA
66969595 AATTTATAAAATTATAAGT
1 AATTTATAAAATTATAAGT
66969614 AATTTATAAAATTATAAGT
1 AATTTATAAAATTATAAGT
66969633 TAATAGATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
AATTTATAAAATTATAAGT
Found at i:66973658 original size:12 final size:12
Alignment explanation
Indices: 66973641--66973671 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
66973631 CTTCGAATAC
66973641 CCGCCACCGCTG
1 CCGCCACCGCTG
66973653 CCGCCACCGCTG
1 CCGCCACCGCTG
66973665 CCGCCAC
1 CCGCCAC
66973672 TGCCACCGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.61, G:0.23, T:0.06
Consensus pattern (12 bp):
CCGCCACCGCTG
Found at i:66980448 original size:22 final size:21
Alignment explanation
Indices: 66980399--66980448 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
66980389 AATTTTAAAG
66980399 AATTA-AATTAAAATTTTATT
1 AATTATAATTAAAATTTTATT
66980419 -ATTAATAATTTAAAATTTT-TT
1 AATT-ATAA-TTAAAATTTTATT
66980440 AAATTATAA
1 -AATTATAA
66980449 AAGGACTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
19 3 0.12
20 1 0.04
21 4 0.16
22 14 0.56
23 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATTATAATTAAAATTTTATT
Found at i:66982916 original size:154 final size:157
Alignment explanation
Indices: 66982752--66983061 Score: 502
Period size: 158 Copynumber: 2.0 Consensus size: 157
66982742 ACGCCGCACG
* * * *
66982752 CACACACACACAGACATACATACATACATCGCACGCACAT-C-CATATGTACGTATACATATCTG
1 CACACACACACACACACACATACATACATCGCACACACATACACACATGTACGTATACATATCTG
*
66982815 CAAAGATTGAGTTATAGATGACATTTACTTGCATGAAACCGCATA-CCGGATTGTGATGTGGGGT
66 CAAAGATTGAGTTATAGATGACATTTACTTGCATGAAACCGCATAGCCGGATCGTGATGTGGGGT
66982879 AAGCC-GAAATCCTGAAGGAACTTTACA
131 AAGCCAG-AATCCTGAAGGAACTTTACA
* *
66982906 CACACACACACACACACACATACATACATCGTACACATATACACACACATGTACGTATACATATC
1 CACACACACACACACACACATACATACATCGCACACACAT--ACACACATGTACGTATACATATC
66982971 TGCAAAGATTGAGTTATAGATGACATTTACTTGCATGAAACCGCATAGCCGGATCGTGATGTGGG
64 TGCAAAGATTGAGTTATAGATGACATTTACTTGCATGAAACCGCATAGCCGGATCGTGATGTGGG
66983036 GTAAGCCAGAATCCTGAAGGAACTTT
129 GTAAGCCAGAATCCTGAAGGAACTTT
66983062 TCGGTACAAT
Statistics
Matches: 143, Mismatches: 7, Indels: 7
0.91 0.04 0.04
Matches are distributed among these distances:
154 35 0.24
157 1 0.01
158 66 0.46
159 40 0.28
160 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (157 bp):
CACACACACACACACACACATACATACATCGCACACACATACACACATGTACGTATACATATCTG
CAAAGATTGAGTTATAGATGACATTTACTTGCATGAAACCGCATAGCCGGATCGTGATGTGGGGT
AAGCCAGAATCCTGAAGGAACTTTACA
Found at i:66988722 original size:264 final size:263
Alignment explanation
Indices: 66988241--66988743 Score: 792
Period size: 264 Copynumber: 1.9 Consensus size: 263
66988231 GGGAAGAAAT
* * *
66988241 TGTCATATTTCAAATTTTGTGCTTGTTTCAAGCCCAAATAGACCATTATAGTTACTTTTAACATA
1 TGTCAGATTTCAAATATTGTGCTTGTTTCAAGCCCAAATAGACCATCATAGTTACTTTTAACATA
* * *
66988306 TGAAAAAATAGATCAATGATCATCCTTCAACATATGACATTAATACTATATGTCCAGAAAGGCCA
66 TGAAAAAATAGATCAAAGATCATCCTTCAACATATGACATTAATACTATATATCCACAAA-GCCA
*
66988371 CCGAAGCCTTGTAAACCAATGCCTGGTCTTTATGGATACTGGTTTTCTAACATTATGCCCGTCTC
130 CCGAAGCCTTGTAAACCAATGCCTGGTCTTTATGGATACTGGTTTTCTAACATTATGCCCGCCTC
* *
66988436 CACAATTGCAACTTACTGATATGTTCTGTTTTTCTGCCAAAACATATATAATACATAAGTGGAAC
195 CACAATTGCAACTTACTGATATGTTCTATTTTTCTACCAAAACATATATAATACATAAGTGGAAC
66988501 TTAG
260 TTAG
*
66988505 TGTCAGATTTCAAATATTGTGCTTGTTTCAAGTCCAAATAGACCATCATAGTTACTTTTAACATA
1 TGTCAGATTTCAAATATTGTGCTTGTTTCAAGCCCAAATAGACCATCATAGTTACTTTTAACATA
* *
66988570 TGAAAAGATAGATCAAAGATCATCCTTCAACATATGACATTAATACTATATATCTACAAA-CCAC
66 TGAAAAAATAGATCAAAGATCATCCTTCAACATATGACATTAATACTATATATCCACAAAGCCAC
* * * ***
66988634 TGAAGCCTTTTAAACCAATGTCTGGTCTTTATGGATTACTGGTTTTCTAACATTAATGTTTGCCT
131 CGAAGCCTTGTAAACCAATGCCTGGTCTTTATGGA-TACTGGTTTTCTAACATT-ATGCCCGCCT
* *
66988699 CCATAATTGCAACTTAGTGATATGTTCTATTTTTCTACCAAAACA
194 CCACAATTGCAACTTACTGATATGTTCTATTTTTCTACCAAAACA
66988744 GGAAATTTAG
Statistics
Matches: 217, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
262 36 0.17
263 18 0.08
264 163 0.75
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (263 bp):
TGTCAGATTTCAAATATTGTGCTTGTTTCAAGCCCAAATAGACCATCATAGTTACTTTTAACATA
TGAAAAAATAGATCAAAGATCATCCTTCAACATATGACATTAATACTATATATCCACAAAGCCAC
CGAAGCCTTGTAAACCAATGCCTGGTCTTTATGGATACTGGTTTTCTAACATTATGCCCGCCTCC
ACAATTGCAACTTACTGATATGTTCTATTTTTCTACCAAAACATATATAATACATAAGTGGAACT
TAG
Found at i:66995819 original size:4 final size:4
Alignment explanation
Indices: 66995810--66995834 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
66995800 ACTCATAAAC
66995810 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
66995835 ATTTTGTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:66996689 original size:32 final size:32
Alignment explanation
Indices: 66996650--66996723 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
66996640 GACCTCCAAA
* * *
66996650 AAATTTAAGTAC-CAACTTAAGAAAAAAGTGTC
1 AAATTTAAATACTAAACTTAA-AAAAAAATGTC
*
66996682 AAATTTAAATACTAAATTTAAAAAAAAATGTC
1 AAATTTAAATACTAAACTTAAAAAAAAATGTC
66996714 AAATTTAAAT
1 AAATTTAAAT
66996724 GTCAAATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 31 0.84
33 6 0.16
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.30
Consensus pattern (32 bp):
AAATTTAAATACTAAACTTAAAAAAAAATGTC
Found at i:67001497 original size:20 final size:21
Alignment explanation
Indices: 67001456--67001497 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
67001446 GTTCAACTGA
**
67001456 TTTAATAATTTTTTTATTATT
1 TTTAATAATTTTTTTAAAATT
67001477 TTTAA-AATTTTTTTAAAATT
1 TTTAATAATTTTTTTAAAATT
67001497 T
1 T
67001498 GAATTATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTAATAATTTTTTTAAAATT
Found at i:67002845 original size:187 final size:190
Alignment explanation
Indices: 67002520--67002892 Score: 565
Period size: 187 Copynumber: 2.0 Consensus size: 190
67002510 TCCCGAACCG
* * **
67002520 TGGAACTGGAATGTGTATTTGTTTCCTCTTTGGTGTTGTGGTGTGGTAATCCGATACTTGATTTT
1 TGGAACTGAAATGTGTATTTGCTTCCTCTCCGGTGTTGTGGTGTGGTAATCCGATACTTGATTTT
*
67002585 ATTCCCTGTGAGGTTAGCTATTGAACTTCTCGAAAGTAACATTGAATTGTTTGATGCATAATGGT
66 ATTCCCTGTGAGGTTAGCCATTGAACTTCTCGAAAGTAACATTGAATTGTTTGATGCATAATGGT
*
67002650 TAATGTTTGAATGAAAGTTTACTTTATGTTCGGTTTCGAGGTTAGTTAGGTAGTGTATTA
131 TAATGTTTGAATGAAAGTTTACTTTATGTTCGGTTTCGAGGTTACTTAGGTAGTGTATTA
*
67002710 TGGAACTGAAATGTGTATTTGCTTCCTCTCCGGTG-T-T-GTGTGGTAATCCGTTACTTGATTTT
1 TGGAACTGAAATGTGTATTTGCTTCCTCTCCGGTGTTGTGGTGTGGTAATCCGATACTTGATTTT
* * * * **
67002772 ATTCTCTGTGAGGTTAGCCATTGAACTTTTC-ATAAGTACCATTGCATTGTTTGATGCATGTTGG
66 ATTCCCTGTGAGGTTAGCCATTGAACTTCTCGA-AAGTAACATTGAATTGTTTGATGCATAATGG
* * *
67002836 TTCATGTTTGAATGAAAGTTTACTTTATGTTTGTTTTCGAGGTTACTTAGGTAGTGT
130 TTAATGTTTGAATGAAAGTTTACTTTATGTTCGGTTTCGAGGTTACTTAGGTAGTGT
67002893 CTCATAGTTG
Statistics
Matches: 166, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
186 1 0.01
187 132 0.80
188 1 0.01
189 1 0.01
190 31 0.19
ACGTcount: A:0.21, C:0.12, G:0.24, T:0.43
Consensus pattern (190 bp):
TGGAACTGAAATGTGTATTTGCTTCCTCTCCGGTGTTGTGGTGTGGTAATCCGATACTTGATTTT
ATTCCCTGTGAGGTTAGCCATTGAACTTCTCGAAAGTAACATTGAATTGTTTGATGCATAATGGT
TAATGTTTGAATGAAAGTTTACTTTATGTTCGGTTTCGAGGTTACTTAGGTAGTGTATTA
Found at i:67003036 original size:158 final size:158
Alignment explanation
Indices: 67002747--67003056 Score: 469
Period size: 158 Copynumber: 2.0 Consensus size: 158
67002737 CTCCGGTGTT
* * * * * *
67002747 GTGTGGTAATCCGTTACTTGATTTTATTCTCTGTGAGGTTAGCCATTGAACTTTTCATAAGTACC
1 GTGTGGTAATCCGGTACTTGATTTTATTCTCTGTAAGGTCAGCCATTGAACTTCTCAAAAGTAAC
* * * *
67002812 ATTGCATTGTTTGATGCATGTTGGTTCATGTTTGAATGAAAGTTTACTTTATGTTTGTTTTCGAG
66 ATTGCATTGTTTAATGCATGATGGTTCATGTTTGAATGAAAGTTTACTTTATGTTCGTTTTAGAG
* *
67002877 GTTACTTAGGTAGTGTCTCATAGTTGTG
131 GTTACTTAGGTAATGTATCATAGTTGTG
67002905 GTGTGGTAATCCGGTACTTGATTTTATTCTCTGTAAGGGTCAGCCATTGAACTTCTCAAAAGTAA
1 GTGTGGTAATCCGGTACTTGATTTTATTCTCTGTAA-GGTCAGCCATTGAACTTCTCAAAAGTAA
* *
67002970 CATTGCATTTTTTAATGCATGATGTTTCATGTTTGAATG-AAGTTTACTTTATGTTCGTTTTAGA
65 CATTGCATTGTTTAATGCATGATGGTTCATGTTTGAATGAAAGTTTACTTTATGTTCGTTTTAGA
*
67003034 GGTTAGTTAGGTAATGTATCATA
130 GGTTACTTAGGTAATGTATCATA
67003057 TGATGAAATA
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
158 77 0.57
159 59 0.43
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.44
Consensus pattern (158 bp):
GTGTGGTAATCCGGTACTTGATTTTATTCTCTGTAAGGTCAGCCATTGAACTTCTCAAAAGTAAC
ATTGCATTGTTTAATGCATGATGGTTCATGTTTGAATGAAAGTTTACTTTATGTTCGTTTTAGAG
GTTACTTAGGTAATGTATCATAGTTGTG
Found at i:67009874 original size:31 final size:31
Alignment explanation
Indices: 67009824--67009899 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
67009814 GATTTAGTCT
*
67009824 TTGTAC-TTT-AATTTGGTCAATTTTAATCC
1 TTGTACTTTTCAAATTGGTCAATTTTAATCC
*
67009853 TTGTACTTTTCAAATTGGTCAATTTTAGTCC
1 TTGTACTTTTCAAATTGGTCAATTTTAATCC
67009884 TTGTACTTTTCAAATT
1 TTGTACTTTTCAAATT
67009900 CTTTAAGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
29 6 0.14
30 3 0.07
31 34 0.79
ACGTcount: A:0.24, C:0.14, G:0.11, T:0.51
Consensus pattern (31 bp):
TTGTACTTTTCAAATTGGTCAATTTTAATCC
Found at i:67012101 original size:105 final size:104
Alignment explanation
Indices: 67011920--67012128 Score: 409
Period size: 105 Copynumber: 2.0 Consensus size: 104
67011910 AATGTCTAGA
67011920 AATCGTTGCCCAGAAAGTTTTGGACTGGTACTGCTACTGTATTCTTGCTCTGGATATATGTATAT
1 AATCGTTGCCCAGAAAGTTTTGGACTGGTACTGCTACTGTATTCTTGCTCTGGATATATGTATAT
67011985 ACATACGTATAGATATAAGCACAATATTTGAAACGTTAC
66 ACATACGTATAGATATAAGCACAATATTTGAAACGTTAC
67012024 AATCGTTGCCCAGAAAGTTTTGGACTGGTACTGCTACTGGTATTCTTGCTCTGGATATATGTATA
1 AATCGTTGCCCAGAAAGTTTTGGACTGGTACTGCTACT-GTATTCTTGCTCTGGATATATGTATA
67012089 TACATACGTATAGATATAAGCACAATATTTGAAACGTTAC
65 TACATACGTATAGATATAAGCACAATATTTGAAACGTTAC
67012129 TAATTCATAT
Statistics
Matches: 104, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
104 38 0.37
105 66 0.63
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (104 bp):
AATCGTTGCCCAGAAAGTTTTGGACTGGTACTGCTACTGTATTCTTGCTCTGGATATATGTATAT
ACATACGTATAGATATAAGCACAATATTTGAAACGTTAC
Found at i:67015608 original size:22 final size:22
Alignment explanation
Indices: 67015580--67015626 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
67015570 TGTATTTGTA
67015580 TTGTAACCTTAAAAAAAATGAG
1 TTGTAACCTTAAAAAAAATGAG
67015602 TTGTAACCTTAAAAAAAATGAG
1 TTGTAACCTTAAAAAAAATGAG
67015624 TTG
1 TTG
67015627 AACTTGAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.30
Consensus pattern (22 bp):
TTGTAACCTTAAAAAAAATGAG
Found at i:67016803 original size:83 final size:83
Alignment explanation
Indices: 67016664--67016830 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
67016654 TTACATGTTG
67016664 CAAGAAAACTGATATGGTTGTTGTTGTTGTTTTTGAAGACCTACGAAAGAGAAAGTATTACAAAG
1 CAAGAAAACTGATATGGTTGTTGTTGTTGTTTTTGAAGACCTACGAAAGAGAAAGTATTACAAAG
67016729 TGGCTAAACTCGAACCAT
66 TGGCTAAACTCGAACCAT
67016747 CAAGAAAACTGATATGGTTGTTGTTGTTGTTTTTGAAGACCTACGAAAGAGAAAGTATTACAAAG
1 CAAGAAAACTGATATGGTTGTTGTTGTTGTTTTTGAAGACCTACGAAAGAGAAAGTATTACAAAG
67016812 TGGCTAAACTCGAACCAT
66 TGGCTAAACTCGAACCAT
67016830 C
1 C
67016831 GAACCTGTCC
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (83 bp):
CAAGAAAACTGATATGGTTGTTGTTGTTGTTTTTGAAGACCTACGAAAGAGAAAGTATTACAAAG
TGGCTAAACTCGAACCAT
Found at i:67018694 original size:36 final size:36
Alignment explanation
Indices: 67018653--67018724 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
67018643 CTTTAGACAA
67018653 AACTCTTTAAATGTTATTTTTTCCATTCACAAAATT
1 AACTCTTTAAATGTTATTTTTTCCATTCACAAAATT
* *
67018689 AACTCTTTTAATGTTATTTTTTCGATTCACAAAATT
1 AACTCTTTAAATGTTATTTTTTCCATTCACAAAATT
67018725 TTTAAAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.04, T:0.49
Consensus pattern (36 bp):
AACTCTTTAAATGTTATTTTTTCCATTCACAAAATT
Found at i:67019696 original size:88 final size:88
Alignment explanation
Indices: 67019598--67019774 Score: 354
Period size: 88 Copynumber: 2.0 Consensus size: 88
67019588 GATCAGCAAC
67019598 GATTGATTTATAAAGGGCGAATATTGAAAGATGACCAAACCCTTCAAAGTTATGGTAATAAGTTT
1 GATTGATTTATAAAGGGCGAATATTGAAAGATGACCAAACCCTTCAAAGTTATGGTAATAAGTTT
67019663 TAATTGATTTTAGAATTTTGTTT
66 TAATTGATTTTAGAATTTTGTTT
67019686 GATTGATTTATAAAGGGCGAATATTGAAAGATGACCAAACCCTTCAAAGTTATGGTAATAAGTTT
1 GATTGATTTATAAAGGGCGAATATTGAAAGATGACCAAACCCTTCAAAGTTATGGTAATAAGTTT
67019751 TAATTGATTTTAGAATTTTGTTT
66 TAATTGATTTTAGAATTTTGTTT
67019774 G
1 G
67019775 TTTTTTTCTT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (88 bp):
GATTGATTTATAAAGGGCGAATATTGAAAGATGACCAAACCCTTCAAAGTTATGGTAATAAGTTT
TAATTGATTTTAGAATTTTGTTT
Found at i:67022996 original size:7 final size:7
Alignment explanation
Indices: 67022984--67023022 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
67022974 CATTCTATTT
67022984 TTTTGAA
1 TTTTGAA
67022991 TTTTGAA
1 TTTTGAA
67022998 TTTTGAA
1 TTTTGAA
67023005 TTTTGAA
1 TTTTGAA
67023012 TTTTGAA
1 TTTTGAA
67023019 TTTT
1 TTTT
67023023 TATCATTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.62
Consensus pattern (7 bp):
TTTTGAA
Found at i:67025791 original size:16 final size:16
Alignment explanation
Indices: 67025772--67025806 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
67025762 TGTATCTTTG
*
67025772 ATTGATATAATCTTCA
1 ATTGAAATAATCTTCA
67025788 ATTGAAATAATCTTCA
1 ATTGAAATAATCTTCA
67025804 ATT
1 ATT
67025807 CTGAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (16 bp):
ATTGAAATAATCTTCA
Found at i:67032248 original size:6 final size:6
Alignment explanation
Indices: 67032237--67032266 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
67032227 TGGATTTGAG
67032237 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
67032267 AATTGTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:67032251 original size:18 final size:18
Alignment explanation
Indices: 67032231--67032266 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
67032221 TTGGGTTGGA
67032231 TTTGAGTTTTTATTTTTAT
1 TTTGA-TTTTTATTTTTAT
*
67032250 TTTTATTTTTATTTTTA
1 TTTGATTTTTATTTTTA
67032267 AATTGTTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.78
Consensus pattern (18 bp):
TTTGATTTTTATTTTTAT
Found at i:67032338 original size:28 final size:27
Alignment explanation
Indices: 67032286--67032340 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
67032276 ATTCATTTTT
*
67032286 TATTTTAAAATAATAAATTATATAAAAA
1 TATTTTAAAAT-ATAAATTAAATAAAAA
67032314 TATTTTATAAAT-TAAATTTAAATAAAA
1 TATTTTA-AAATATAAA-TTAAATAAAA
67032341 TAATTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.17
28 16 0.67
29 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
TATTTTAAAATATAAATTAAATAAAAA
Found at i:67035493 original size:30 final size:30
Alignment explanation
Indices: 67035425--67035496 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 30
67035415 GATTAAATTA
* *
67035425 AAATTAAAGTTTCAAGTATACATTTAAACC
1 AAATTAAAATTTCAAGTATACAATTAAACC
* * * *
67035455 ACAATTAAAATTTCACGTGTATAATTACACC
1 A-AATTAAAATTTCAAGTATACAATTAAACC
67035486 AAATTAAAATT
1 AAATTAAAATT
67035497 CACATATACA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 11 0.31
31 24 0.69
ACGTcount: A:0.47, C:0.14, G:0.06, T:0.33
Consensus pattern (30 bp):
AAATTAAAATTTCAAGTATACAATTAAACC
Found at i:67042987 original size:31 final size:31
Alignment explanation
Indices: 67042952--67043020 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
67042942 TTTAACAATC
67042952 TAGTGATTTAAATAAAAAAATCTAAATAGTT
1 TAGTGATTTAAATAAAAAAATCTAAATAGTT
** * ** * *
67042983 TAGTGGCTTAAATGAAAACTTTTGAATAGTT
1 TAGTGATTTAAATAAAAAAATCTAAATAGTT
67043014 TAGTGAT
1 TAGTGAT
67043021 AGTTTTATAA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.16, T:0.38
Consensus pattern (31 bp):
TAGTGATTTAAATAAAAAAATCTAAATAGTT
Found at i:67046176 original size:46 final size:46
Alignment explanation
Indices: 67046124--67046215 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
67046114 TAGTCTATTA
67046124 CGAATTAGATTGCATTTTACCCCCTTTACTCAAAAAATAAACAAAT
1 CGAATTAGATTGCATTTTACCCCCTTTACTCAAAAAATAAACAAAT
67046170 CGAATTAGATTGCATTTTACCCCCTTTACTCAAAAAATAAACAAAT
1 CGAATTAGATTGCATTTTACCCCCTTTACTCAAAAAATAAACAAAT
67046216 TAATCTCGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (46 bp):
CGAATTAGATTGCATTTTACCCCCTTTACTCAAAAAATAAACAAAT
Found at i:67047427 original size:75 final size:75
Alignment explanation
Indices: 67047304--67047454 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
67047294 AAATTAAAAG
67047304 AATGTAAATCATTAAATCCTAAAATGAGAATCTTTTTACTTTGTAGGATTAAATATCAAAATTAA
1 AATGTAAATCATTAAATCCTAAAATGAGAATCTTTTTACTTTGTAGGATTAAATATCAAAATTAA
67047369 AAGAATGTAA
66 AAGAATGTAA
67047379 AATGTAAATCATTAAATCCTAAAATGAGAATCTTTTTACTTTGTAGGATTAAATATCAAAATTAA
1 AATGTAAATCATTAAATCCTAAAATGAGAATCTTTTTACTTTGTAGGATTAAATATCAAAATTAA
67047444 AAGAATGTAA
66 AAGAATGTAA
67047454 A
1 A
67047455 TCACATCATG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (75 bp):
AATGTAAATCATTAAATCCTAAAATGAGAATCTTTTTACTTTGTAGGATTAAATATCAAAATTAA
AAGAATGTAA
Found at i:67066145 original size:19 final size:19
Alignment explanation
Indices: 67066096--67066138 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
67066086 AAATAATTTT
*
67066096 AAAATAATAAATA-TTCAAA
1 AAAAT-ATAAAAAGTTCAAA
*
67066115 AAAATATAAAAAGTTCATA
1 AAAATATAAAAAGTTCAAA
67066134 AAAAT
1 AAAAT
67066139 TTTAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAATATAAAAAGTTCAAA
Found at i:67069417 original size:16 final size:16
Alignment explanation
Indices: 67069396--67069429 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
67069386 ATTCATATAT
67069396 ATGTATGTATGTATGC
1 ATGTATGTATGTATGC
*
67069412 ATGTATGTTTGTATGC
1 ATGTATGTATGTATGC
67069428 AT
1 AT
67069430 ACACTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.47
Consensus pattern (16 bp):
ATGTATGTATGTATGC
Found at i:67075348 original size:59 final size:60
Alignment explanation
Indices: 67075232--67075356 Score: 207
Period size: 60 Copynumber: 2.1 Consensus size: 60
67075222 GACGGAATTA
* * *
67075232 AATAGTTGAGTGATTATTTTGTAATTTTTCATAGTTTGATGACCAAAAAAGAAATTTACT
1 AATAGTTGAATGATCATTTTGTAATTTTTCATAGTTGGATGACCAAAAAAGAAATTTACT
*
67075292 AATAGTTGAATGATCATTTTGTATTTTTTCATAGTTGGATGACC-AAAAAGAAATTTACT
1 AATAGTTGAATGATCATTTTGTAATTTTTCATAGTTGGATGACCAAAAAAGAAATTTACT
67075351 AATAGT
1 AATAGT
67075357 AGGATTACTA
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
59 21 0.34
60 40 0.66
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (60 bp):
AATAGTTGAATGATCATTTTGTAATTTTTCATAGTTGGATGACCAAAAAAGAAATTTACT
Found at i:67079710 original size:23 final size:23
Alignment explanation
Indices: 67079684--67079729 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
67079674 TATTATTGTT
* *
67079684 ATTTTAAATTAAATTTAATAAAA
1 ATTTTAAATAAAATTCAATAAAA
*
67079707 ATTTTAAGTAAAATTCAATAAAA
1 ATTTTAAATAAAATTCAATAAAA
67079730 TAAAATAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
ATTTTAAATAAAATTCAATAAAA
Found at i:67086708 original size:47 final size:48
Alignment explanation
Indices: 67086609--67086714 Score: 196
Period size: 47 Copynumber: 2.2 Consensus size: 48
67086599 CAGAGTGGAA
67086609 CTGTTCTTCAGTTCTCAGGATTTTTTCACGGACATTGGACATTGTTTAT
1 CTGTTCTTCAGTTCTCAGGATTTTTTCAC-GACATTGGACATTGTTTAT
67086658 CTGTTCTTCAGTTCTCAGGATTTTTTCA-GACATTGGACATTGTTTAT
1 CTGTTCTTCAGTTCTCAGGATTTTTTCACGACATTGGACATTGTTTAT
67086705 CTGTTCTTCA
1 CTGTTCTTCA
67086715 AAGGCATAGG
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
47 29 0.51
49 28 0.49
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (48 bp):
CTGTTCTTCAGTTCTCAGGATTTTTTCACGACATTGGACATTGTTTAT
Found at i:67090587 original size:12 final size:12
Alignment explanation
Indices: 67090566--67090599 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
67090556 AATAAAACAA
67090566 ATTAAAATTAAG
1 ATTAAAATTAAG
*
67090578 ATTAAGATTAAG
1 ATTAAAATTAAG
*
67090590 ATTATAATTA
1 ATTAAAATTA
67090600 TAATTAGACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (12 bp):
ATTAAAATTAAG
Found at i:67092608 original size:30 final size:28
Alignment explanation
Indices: 67092572--67092638 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
67092562 ACAATCGGAC
*
67092572 TTAAATTTTGAAATCTAAA-AAATAAAATGA
1 TTAAATTTTAAAAT-TAAACAAATAAAA--A
*
67092602 TTAAATTCTTAAAATTAAACATATAAAAA
1 TTAAATT-TTAAAATTAAACAAATAAAAA
67092631 TTAAATTT
1 TTAAATTT
67092639 CAAATTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 8 0.24
30 11 0.33
31 13 0.39
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.37
Consensus pattern (28 bp):
TTAAATTTTAAAATTAAACAAATAAAAA
Found at i:67107377 original size:96 final size:96
Alignment explanation
Indices: 67107213--67107390 Score: 356
Period size: 96 Copynumber: 1.9 Consensus size: 96
67107203 ATCTATATGA
67107213 TAGATCAAAGAGCAAATAAATCTTTTTTGTTAAAAATTTCATCTATTTGTACTGTTAAAAACTGA
1 TAGATCAAAGAGCAAATAAATCTTTTTTGTTAAAAATTTCATCTATTTGTACTGTTAAAAACTGA
67107278 CGTAATTTACGGAATAATTGGTTATGTATCT
66 CGTAATTTACGGAATAATTGGTTATGTATCT
67107309 TAGATCAAAGAGCAAATAAATCTTTTTTGTTAAAAATTTCATCTATTTGTACTGTTAAAAACTGA
1 TAGATCAAAGAGCAAATAAATCTTTTTTGTTAAAAATTTCATCTATTTGTACTGTTAAAAACTGA
67107374 CGTAATTTACGGAATAA
66 CGTAATTTACGGAATAA
67107391 CCAAACAATG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (96 bp):
TAGATCAAAGAGCAAATAAATCTTTTTTGTTAAAAATTTCATCTATTTGTACTGTTAAAAACTGA
CGTAATTTACGGAATAATTGGTTATGTATCT
Found at i:67107780 original size:70 final size:69
Alignment explanation
Indices: 67107658--67107796 Score: 188
Period size: 70 Copynumber: 2.0 Consensus size: 69
67107648 TGTCACTTTT
* * * *
67107658 AAAAACGAAATCTCCGATTATAGATCAACGACACAGTTTCTTTACGGAGACGGAAACCTAAACTT
1 AAAAACGAAATCTCCAATTATAAATCAACAACACAGTTTCTTCACGGAGACGGAAACCTAAACTT
67107723 ACAA
66 ACAA
* * ** *
67107727 AAAAACCGAAATTTCCAATTATAAATCAACAACATAGTTTCTTCGTGGGGACGGAAACCTAAACT
1 AAAAA-CGAAATCTCCAATTATAAATCAACAACACAGTTTCTTCACGGAGACGGAAACCTAAACT
67107792 TACAA
65 TACAA
67107797 TGCTGCAAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
69 5 0.08
70 55 0.92
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (69 bp):
AAAAACGAAATCTCCAATTATAAATCAACAACACAGTTTCTTCACGGAGACGGAAACCTAAACTT
ACAA
Found at i:67113292 original size:22 final size:23
Alignment explanation
Indices: 67113243--67113292 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
67113233 AATCATATTG
*
67113243 ATAATAAAAATAAAATTGAATCT
1 ATAATTAAAATAAAATTGAATCT
* *
67113266 A-AATTAAAATAAATTTTAAT-T
1 ATAATTAAAATAAAATTGAATCT
67113287 ATAATT
1 ATAATT
67113293 TACGTATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.09
22 20 0.87
23 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (23 bp):
ATAATTAAAATAAAATTGAATCT
Found at i:67114653 original size:32 final size:29
Alignment explanation
Indices: 67114597--67114657 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 29
67114587 AACAAATAAT
67114597 TATATTTATCTAATATAAAATTAAATTAA
1 TATATTTATCTAATATAAAATTAAATTAA
*
67114626 TATATTTATTTAAATATATAAAGTTAAATTAA
1 TATATTTATCT-AATATA-AAA-TTAAATTAA
67114658 AATTAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 10 0.36
30 6 0.21
31 3 0.11
32 9 0.32
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (29 bp):
TATATTTATCTAATATAAAATTAAATTAA
Found at i:67120469 original size:30 final size:30
Alignment explanation
Indices: 67120414--67120480 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
67120404 AAAAAATTGA
* *
67120414 ATGACTAAAATGAAAAAAATTAATAGTTAG
1 ATGACTAAAATGAAAAAAATGAATAGTCAG
*
67120444 ATGACTAAAAT-AAAACAACTGAATAGTCAG
1 ATGACTAAAATGAAAA-AAATGAATAGTCAG
*
67120474 GTGACTA
1 ATGACTA
67120481 TTCTTATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (30 bp):
ATGACTAAAATGAAAAAAATGAATAGTCAG
Found at i:67120686 original size:23 final size:23
Alignment explanation
Indices: 67120641--67120686 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
67120631 AATTTAATTG
*
67120641 TTAATTCAGTTAATGTTATTTTT
1 TTAATTCAGTTAATGTAATTTTT
* *
67120664 TTAATTC-GTTAGTGTAATATTT
1 TTAATTCAGTTAATGTAATTTTT
67120686 T
1 T
67120687 GAAATAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.59
Consensus pattern (23 bp):
TTAATTCAGTTAATGTAATTTTT
Found at i:67122172 original size:31 final size:31
Alignment explanation
Indices: 67122137--67122196 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
67122127 GTAACAACCC
*
67122137 AATGACTTAAATAAAAATTTTTGAATAGTCA
1 AATGACTTAAATAAAAATTTTCGAATAGTCA
*
67122168 AATGACTTAAATGAAAATTTTCGAATAGT
1 AATGACTTAAATAAAAATTTTCGAATAGT
67122197 TCAATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.35
Consensus pattern (31 bp):
AATGACTTAAATAAAAATTTTCGAATAGTCA
Found at i:67128511 original size:4 final size:4
Alignment explanation
Indices: 67128482--67128587 Score: 104
Period size: 4 Copynumber: 26.5 Consensus size: 4
67128472 AACCTCATCA
* * * *
67128482 GTAT GTAT GCAT GCAT GCAT GCAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * * *
67128530 GTAT GTAT GTCT GTCT GTCT GTCT GTCT GTCT GTCT GTCT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
67128578 GTAT GTAT GT
1 GTAT GTAT GT
67128588 TGCATTACCT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 98 1.00
ACGTcount: A:0.17, C:0.11, G:0.25, T:0.46
Consensus pattern (4 bp):
GTAT
Found at i:67132698 original size:15 final size:15
Alignment explanation
Indices: 67132680--67132723 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
67132670 CATCAAAATA
*
67132680 ATCATCATCATCTCC
1 ATCATCATCACCTCC
67132695 ATCATCATCACCTCC
1 ATCATCATCACCTCC
67132710 ATC-TC--CACCTCC
1 ATCATCATCACCTCC
67132722 AT
1 AT
67132724 GGTTAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 9 0.32
14 2 0.07
15 17 0.61
ACGTcount: A:0.25, C:0.45, G:0.00, T:0.30
Consensus pattern (15 bp):
ATCATCATCACCTCC
Found at i:67134322 original size:5 final size:5
Alignment explanation
Indices: 67134312--67134342 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
67134302 TACAAGCCAG
67134312 ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA A
1 ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA A
67134343 TCAGATTGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (5 bp):
ACCCA
Found at i:67138106 original size:24 final size:24
Alignment explanation
Indices: 67138074--67138121 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
67138064 CAATACATCT
67138074 CCAGGAATTATAATAAAGTAGGTG
1 CCAGGAATTATAATAAAGTAGGTG
67138098 CCAGGAATTATAATAAAGTAGGTG
1 CCAGGAATTATAATAAAGTAGGTG
67138122 ATTGGATGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (24 bp):
CCAGGAATTATAATAAAGTAGGTG
Found at i:67144473 original size:30 final size:31
Alignment explanation
Indices: 67144438--67144500 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
67144428 AGTAAATTTG
67144438 AAATTTAAT-TTTTGTACTTTTTAT-TTTTAA
1 AAATTTAATCTTTT-TACTTTTTATATTTTAA
* *
67144468 AAATTTAGTCTTTTTATTTTTTATATTTTAA
1 AAATTTAATCTTTTTACTTTTTATATTTTAA
67144499 AA
1 AA
67144501 TTCAGGTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 17 0.59
31 12 0.41
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (31 bp):
AAATTTAATCTTTTTACTTTTTATATTTTAA
Found at i:67144497 original size:23 final size:23
Alignment explanation
Indices: 67144441--67144497 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
67144431 AAATTTGAAA
*
67144441 TTTAATTTTTGTACTTTTTATTT
1 TTTAATTTTAGTACTTTTTATTT
* *
67144464 TTAAAAATTTAGT-CTTTTTATTT
1 TT-TAATTTTAGTACTTTTTATTT
67144487 TTTATATTTTA
1 TTTA-ATTTTA
67144498 AAATTCAGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
22 1 0.04
23 19 0.70
24 7 0.26
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (23 bp):
TTTAATTTTAGTACTTTTTATTT
Found at i:67146727 original size:14 final size:14
Alignment explanation
Indices: 67146708--67146738 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67146698 TGCTATTATT
67146708 TTACTATTATGTTG
1 TTACTATTATGTTG
*
67146722 TTACTATTTTGTTG
1 TTACTATTATGTTG
67146736 TTA
1 TTA
67146739 TTGTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:67146983 original size:12 final size:12
Alignment explanation
Indices: 67146954--67146985 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
67146944 ATATATTTTT
67146954 AAATT-ATATAA
1 AAATTAATATAA
67146965 AAA-TAATATAA
1 AAATTAATATAA
67146976 AAATTAATAT
1 AAATTAATAT
67146986 GAGCTGCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 12 0.63
12 6 0.32
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAATTAATATAA
Found at i:67148018 original size:7 final size:7
Alignment explanation
Indices: 67148006--67148034 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
67147996 ATTGTTATAA
67148006 ATTTACT
1 ATTTACT
67148013 ATTTACT
1 ATTTACT
67148020 ATTTACT
1 ATTTACT
67148027 ATTTACT
1 ATTTACT
67148034 A
1 A
67148035 ATAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTTACT
Found at i:67148420 original size:23 final size:22
Alignment explanation
Indices: 67148385--67148429 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
67148375 TTAATTTTGA
67148385 ATATTAAAGTAAAAATTTACAAT
1 ATATTAAAGT-AAAATTTACAAT
** *
67148408 ATATTAACTTAAACTTTACAAT
1 ATATTAAAGTAAAATTTACAAT
67148430 TTTAAAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (22 bp):
ATATTAAAGTAAAATTTACAAT
Found at i:67150179 original size:6 final size:6
Alignment explanation
Indices: 67150168--67150214 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
67150158 CAAACATTAC
67150168 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACA
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACA
67150215 AAGAAAAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (6 bp):
ATACAT
Found at i:67166013 original size:14 final size:15
Alignment explanation
Indices: 67165985--67166021 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
67165975 GTAAAATTTC
*
67165985 AAAGTAATT-TTAAT
1 AAAGTATTTCTTAAT
67165999 AAA-TATTTCTTAAT
1 AAAGTATTTCTTAAT
67166013 AAAGTATTT
1 AAAGTATTT
67166022 TTCATGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 11 0.55
15 5 0.25
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (15 bp):
AAAGTATTTCTTAAT
Found at i:67172585 original size:4 final size:4
Alignment explanation
Indices: 67172576--67172606 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
67172566 TTAACTCCTC
*
67172576 TGTA TGTA TGTA TGTA TGTA CGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
67172607 TGCATTACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.26, T:0.48
Consensus pattern (4 bp):
TGTA
Found at i:67175197 original size:19 final size:18
Alignment explanation
Indices: 67175165--67175200 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
67175155 AATGGTTAAT
67175165 TAAAAATTTATAAAAATC
1 TAAAAATTTATAAAAATC
*
67175183 TAAAATATTTTTAAAAAT
1 TAAAA-ATTTATAAAAAT
67175201 AAAATCAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAAATTTATAAAAATC
Found at i:67175203 original size:17 final size:18
Alignment explanation
Indices: 67175165--67175205 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
67175155 AATGGTTAAT
67175165 TAAAA-ATTTATAAAAATC
1 TAAAATATTTATAAAAA-C
*
67175183 TAAAATATTTTTAAAAA-
1 TAAAATATTTATAAAAAC
67175200 TAAAAT
1 TAAAAT
67175206 CAGTTCAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 5 0.24
19 10 0.48
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAATATTTATAAAAAC
Found at i:67183620 original size:31 final size:31
Alignment explanation
Indices: 67183580--67183649 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
67183570 GAAATTTTGA
* *
67183580 AATTAAAAAAATAAAAATACTAAAATTAATC
1 AATTTAAAAAATAAAAAGACTAAAATTAATC
* * * *
67183611 AATTTAAAAAATTATAAGATTAAAATTTATC
1 AATTTAAAAAATAAAAAGACTAAAATTAATC
*
67183642 AAATTAAA
1 AATTTAAA
67183650 GTATTAAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (31 bp):
AATTTAAAAAATAAAAAGACTAAAATTAATC
Found at i:67183637 original size:23 final size:23
Alignment explanation
Indices: 67183611--67183658 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
67183601 AAAATTAATC
67183611 AATTTAAAAAATTATAAG-ATTAA
1 AATTTAAAAAATTA-AAGTATTAA
**
67183634 AATTTATCAAATTAAAGTATTAA
1 AATTTAAAAAATTAAAGTATTAA
67183657 AA
1 AA
67183659 CTATATCCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTTAAAAAATTAAAGTATTAA
Found at i:67198712 original size:17 final size:17
Alignment explanation
Indices: 67198690--67198723 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67198680 ATCCACTAAT
*
67198690 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
67198707 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
67198724 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:67203341 original size:17 final size:17
Alignment explanation
Indices: 67203319--67203352 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67203309 ATCCACTAAT
*
67203319 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
67203336 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
67203353 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:67211114 original size:34 final size:34
Alignment explanation
Indices: 67211076--67211140 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
67211066 ATAGCTAATA
67211076 TAAAATTAAAATGTAAATAACTAAAATTAAAGAC
1 TAAAATTAAAATGTAAATAACTAAAATTAAAGAC
67211110 TAAAATTAAAATGTAAATAACTAAAATTAAA
1 TAAAATTAAAATGTAAATAACTAAAATTAAA
67211141 TTGTAATTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.28
Consensus pattern (34 bp):
TAAAATTAAAATGTAAATAACTAAAATTAAAGAC
Found at i:67220017 original size:8 final size:8
Alignment explanation
Indices: 67220004--67220028 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
67219994 GCTTACATAG
67220004 TTTAATAA
1 TTTAATAA
67220012 TTTAATAA
1 TTTAATAA
67220020 TTTAATAA
1 TTTAATAA
67220028 T
1 T
67220029 CTTGATTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTAATAA
Found at i:67243052 original size:33 final size:32
Alignment explanation
Indices: 67243015--67243134 Score: 123
Period size: 33 Copynumber: 3.7 Consensus size: 32
67243005 TAAGAGGCTA
* * *
67243015 GAAGAAGAGGAGCATGAAGGAGCAATAAAACAC
1 GAAGAAGAGGAGCAGGAAGAAGGAAT-AAACAC
* * * **
67243048 GAAGAAGAGGAACGGGTAGAAGGAATCAAACGT
1 GAAGAAGAGGAGCAGGAAGAAGGAAT-AAACAC
67243081 GAAGAAGAGGAGCAGGAAGAAGGAAGTAAACAC
1 GAAGAAGAGGAGCAGGAAGAAGGAA-TAAACAC
* *
67243114 GAAGAAGAGGAGGAAGAAGAA
1 GAAGAAGAGGAGCAGGAAGAA
67243135 ACAAACAAAC
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
33 69 0.99
34 1 0.01
ACGTcount: A:0.51, C:0.08, G:0.36, T:0.05
Consensus pattern (32 bp):
GAAGAAGAGGAGCAGGAAGAAGGAATAAACAC
Found at i:67243144 original size:66 final size:66
Alignment explanation
Indices: 67243015--67243154 Score: 160
Period size: 66 Copynumber: 2.1 Consensus size: 66
67243005 TAAGAGGCTA
* * * ** * *
67243015 GAAGAAGAGGAGCATGAAGGAGCAATAAAACACGAAGAAGAGGAACGGGTAGAAGGAATCAAACG
1 GAAGAAGAGGAGCAGGAAGAAGCAATAAAACACGAAGAAGAGGAACGGGAAGAAACAAACAAACA
67243080 T
66 T
*
67243081 GAAGAAGAGGAGCAGGAAGAAGGAAGT-AAACACGAAGAAGAGG-A-GGAAGAAGAAACAAACAA
1 GAAGAAGAGGAGCAGGAAGAAGCAA-TAAAACACGAAGAAGAGGAACGG--GAAGAAACAAACAA
67243143 ACAT
63 ACAT
67243147 GAAGAAGA
1 GAAGAAGA
67243155 AGAAGAGGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
64 2 0.03
65 1 0.02
66 59 0.94
67 1 0.02
ACGTcount: A:0.53, C:0.09, G:0.33, T:0.05
Consensus pattern (66 bp):
GAAGAAGAGGAGCAGGAAGAAGCAATAAAACACGAAGAAGAGGAACGGGAAGAAACAAACAAACA
T
Found at i:67243145 original size:33 final size:33
Alignment explanation
Indices: 67243015--67243154 Score: 93
Period size: 33 Copynumber: 4.2 Consensus size: 33
67243005 TAAGAGGCTA
* * *
67243015 GAAGAAGAGGAGCATGAAGGAGCAATA-AAACAC
1 GAAGAAGAGGAGCAAGAAGAAACAA-ACAAACAC
* ** * ** * **
67243048 GAAGAAGAGGAACGGGTAGAAGGAATCAAACGT
1 GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
* ** **
67243081 GAAGAAGAGGAGCAGGAAGAAGGAAGTAAACAC
1 GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
* *
67243114 GAAGAAGAGGAGGAAGAAGAAACAAACAAACAT
1 GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
67243147 GAAGAAGA
1 GAAGAAGA
67243155 AGAAGAGGCT
Statistics
Matches: 83, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
33 83 1.00
ACGTcount: A:0.53, C:0.09, G:0.33, T:0.05
Consensus pattern (33 bp):
GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
Found at i:67248477 original size:18 final size:18
Alignment explanation
Indices: 67248431--67248480 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
67248421 AACCCGAAAT
* *
67248431 CTGATCCTGATCCGGATC
1 CTGATCCTGACCCGGAAC
* *
67248449 CTGGTCTTGACCCGGAAC
1 CTGATCCTGACCCGGAAC
*
67248467 GTGATCCTGACCCG
1 CTGATCCTGACCCG
67248481 AAATCACCAC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.24
Consensus pattern (18 bp):
CTGATCCTGACCCGGAAC
Found at i:67258661 original size:17 final size:18
Alignment explanation
Indices: 67258636--67258672 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
67258626 TCATTTAAAA
67258636 ATTATAAATA-TATAAATT
1 ATTATAAATAGTA-AAATT
67258654 ATTA-AAATAGTAAAATT
1 ATTATAAATAGTAAAATT
67258671 AT
1 AT
67258673 AATTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTATAAATAGTAAAATT
Found at i:67260754 original size:151 final size:148
Alignment explanation
Indices: 67260483--67260781 Score: 571
Period size: 151 Copynumber: 2.0 Consensus size: 148
67260473 AATGGACTAA
67260483 ATTGAAATTCTAGCATTTGGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATTTTA
1 ATTGAAATTCTAGCATTTGGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATTTTA
67260548 TAAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCCCCC
66 TAAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCCCCC
67260613 CTTCCCTTCGCCCCCTGC
131 CTTCCCTTCGCCCCCTGC
67260631 ATTGAAATTCTAGCATTTGGGGGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATT
1 ATTGAAATTCTAGCATTT---GGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATT
67260696 TTATAAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCC
63 TTATAAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCC
67260761 CCCCTTCCCTTCGCCCCCTGC
128 CCCCTTCCCTTCGCCCCCTGC
67260782 TTGTATGTCT
Statistics
Matches: 148, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
148 18 0.12
151 130 0.88
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (148 bp):
ATTGAAATTCTAGCATTTGGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATTTTA
TAAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCCCCC
CTTCCCTTCGCCCCCTGC
Found at i:67262792 original size:31 final size:31
Alignment explanation
Indices: 67262757--67262820 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
67262747 TTAACCTAAT
*
67262757 ATGCAAATTAATCCTTTTATATTTGATAAAA
1 ATGCAAATCAATCCTTTTATATTTGATAAAA
67262788 ATGCAAATCAATCCTTTTATATTTGATAAAA
1 ATGCAAATCAATCCTTTTATATTTGATAAAA
67262819 AT
1 AT
67262821 TTCATTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (31 bp):
ATGCAAATCAATCCTTTTATATTTGATAAAA
Found at i:67262960 original size:20 final size:19
Alignment explanation
Indices: 67262914--67262952 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
67262904 TTAATCCGAC
67262914 AAACAAAGATTATTTTTTA
1 AAACAAAGATTATTTTTTA
67262933 AAACAAAGATTATTTTTTA
1 AAACAAAGATTATTTTTTA
67262952 A
1 A
67262953 GTAGAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
AAACAAAGATTATTTTTTA
Found at i:67268602 original size:25 final size:27
Alignment explanation
Indices: 67268543--67268603 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
67268533 TACCACATGC
* *
67268543 ATTTATAAATAATGTTTGAGTTTAAAT
1 ATTTATAAATAATATTTGAGATTAAAT
*
67268570 -TTTA-AAATAA-ATTTGA-ATTAATT
1 ATTTATAAATAATATTTGAGATTAAAT
67268593 ATTTATAAATA
1 ATTTATAAATA
67268604 TAGATAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
23 5 0.17
24 9 0.31
25 11 0.38
26 4 0.14
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (27 bp):
ATTTATAAATAATATTTGAGATTAAAT
Found at i:67271690 original size:21 final size:22
Alignment explanation
Indices: 67271661--67271707 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
67271651 CAGAAGGAGT
*
67271661 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
67271683 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
67271704 GAGT
1 GAGT
67271708 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:67278108 original size:31 final size:30
Alignment explanation
Indices: 67278073--67278168 Score: 88
Period size: 31 Copynumber: 3.1 Consensus size: 30
67278063 GTTAATTAAT
*
67278073 ATTTGGTACCTAAATTTGATTTTAATATTCA
1 ATTTGATACCTAAATTTG-TTTTAATATTCA
* * * *
67278104 ATTTGATACTTAAGTTT-TTCTT-TTGTCTCA
1 ATTTGATACCTAAATTTGTT-TTAATAT-TCA
*
67278134 ATTTGATACCTGAATTTGGTTTTAATATTCA
1 ATTTGATACCTAAATTT-GTTTTAATATTCA
67278165 ATTT
1 ATTT
67278169 AACACCTGTG
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
29 4 0.08
30 19 0.38
31 23 0.46
32 4 0.08
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.52
Consensus pattern (30 bp):
ATTTGATACCTAAATTTGTTTTAATATTCA
Found at i:67278720 original size:6 final size:6
Alignment explanation
Indices: 67278709--67278736 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
67278699 CACACACAGA
67278709 TTTTTC TTTTTC TTTTTC TTTTTC TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTT
67278737 AATTTTTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:67278742 original size:18 final size:18
Alignment explanation
Indices: 67278709--67278743 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67278699 CACACACAGA
**
67278709 TTTTTCTTTTTCTTTTTC
1 TTTTTCTTTTAATTTTTC
67278727 TTTTTCTTTTAATTTTT
1 TTTTTCTTTTAATTTTT
67278744 GCTGCCGAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTCTTTTAATTTTTC
Found at i:67285253 original size:25 final size:23
Alignment explanation
Indices: 67285229--67285273 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
67285219 TTATTATATA
* *
67285229 ATAA-ATATTTTTATATTTTTTT
1 ATAATATATTATTATAATTTTTT
67285251 ATAATATATTATTATAATTTTTT
1 ATAATATATTATTATAATTTTTT
67285274 CAACAAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
ATAATATATTATTATAATTTTTT
Found at i:67300167 original size:20 final size:21
Alignment explanation
Indices: 67300129--67300169 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
67300119 ATTTATGAAC
67300129 AGAAATGAAAGAGATGAGAAG
1 AGAAATGAAAGAGATGAGAAG
67300150 AGAAATGGAAA-A-ATGAGAAG
1 AGAAAT-GAAAGAGATGAGAAG
67300170 GTCTAGAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.32, T:0.10
Consensus pattern (21 bp):
AGAAATGAAAGAGATGAGAAG
Found at i:67304482 original size:29 final size:32
Alignment explanation
Indices: 67304441--67304501 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 32
67304431 TGTATTTATT
* *
67304441 TATAATTGAATCAC-GGTC-AAATTTTCATATA
1 TATAATT-AATCACAAGTCAAAATTTGCATATA
67304472 TATAATT-ATCACAAGTCAAAATTTGCATAT
1 TATAATTAATCACAAGTCAAAATTTGCATAT
67304502 TCGCCAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 5 0.19
30 3 0.12
31 18 0.69
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (32 bp):
TATAATTAATCACAAGTCAAAATTTGCATATA
Found at i:67306617 original size:21 final size:21
Alignment explanation
Indices: 67306551--67306620 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
67306541 TCTCACGAGC
*
67306551 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAACTCTTATGGGT
* * * *
67306572 TT-TCGTTCAGCT-TTATAGAGC
1 TTCT-GTTTAACTCTTAT-GGGT
67306593 TTCTGTTTAACTCTTATGGGT
1 TTCTGTTTAACTCTTATGGGT
67306614 TTCTGTT
1 TTCTGTT
67306621 CAGCTCTCAC
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
20 5 0.14
21 26 0.72
22 5 0.14
ACGTcount: A:0.14, C:0.17, G:0.19, T:0.50
Consensus pattern (21 bp):
TTCTGTTTAACTCTTATGGGT
Found at i:67306627 original size:21 final size:21
Alignment explanation
Indices: 67306563--67306700 Score: 70
Period size: 21 Copynumber: 6.7 Consensus size: 21
67306553 CTGTTTAACC
67306563 CTTATGGGTTT-TCGTTCAGCT
1 CTTATGGGTTTCT-GTTCAGCT
* * * *
67306584 -TTATAGAGCTTCTGTTTAACT
1 CTTAT-GGGTTTCTGTTCAGCT
67306605 CTTATGGGTTTCTGTTCAGCT
1 CTTATGGGTTTCTGTTCAGCT
* * * * *
67306626 CTCACGAGTTTCTATTCAAC-
1 CTTATGGGTTTCTGTTCAGCT
* **
67306646 CTTTATAGGTTTCTGTTTTGCT
1 C-TTATGGGTTTCTGTTCAGCT
* * * *
67306668 CTCATGAGCTTCTGTTCATC-
1 CTTATGGGTTTCTGTTCAGCT
67306688 CTT-TGGGTTTCTG
1 CTTATGGGTTTCTG
67306701 ATAACAATGT
Statistics
Matches: 81, Mismatches: 31, Indels: 12
0.65 0.25 0.10
Matches are distributed among these distances:
19 8 0.10
20 7 0.09
21 60 0.74
22 6 0.07
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (21 bp):
CTTATGGGTTTCTGTTCAGCT
Found at i:67306657 original size:42 final size:42
Alignment explanation
Indices: 67306529--67306700 Score: 165
Period size: 42 Copynumber: 4.1 Consensus size: 42
67306519 TCGTGTTTAC
* * *
67306529 TTTCTGTTTAGCTCTCACGAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCTTTATGGG
* * *
67306571 TTT-TCGTTCAGCT-TTATAGAGCTTCTGTTTAA-CTCTTATGGG
1 TTTCT-GTTCAGCTCTCA-CGAGCTTCTGTTCAACCT-TTATGGG
* * *
67306613 TTTCTGTTCAGCTCTCACGAGTTTCTATTCAACCTTTATAGG
1 TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCTTTATGGG
** * *
67306655 TTTCTGTTTTGCTCTCATGAGCTTCTGTTCATCC-TT-TGGG
1 TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCTTTATGGG
67306695 TTTCTG
1 TTTCTG
67306701 ATAACAATGT
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
40 9 0.08
41 6 0.06
42 87 0.81
43 5 0.05
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.47
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCTTTATGGG
Found at i:67306677 original size:84 final size:82
Alignment explanation
Indices: 67306529--67306700 Score: 195
Period size: 84 Copynumber: 2.1 Consensus size: 82
67306519 TCGTGTTTAC
* * * * *
67306529 TTTCTGTTTAGCTCTCACGAGCTTCTGTTTAACCCTTATGGGTTTTCGTTCAGCTTTATAGAGCT
1 TTTCTGTTCAGCTCTCACGAGCTTCTATTCAACCCTTATAGGTTTTCGTTCAGCTTCATAGAGCT
*
67306594 TCTGTTTAACTCTTATGGG
66 TCTGTTCAAC-CTT-TGGG
* * **
67306613 TTTCTGTTCAGCTCTCACGAGTTTCTATTCAACCTTTATAGG-TTTCTGTTTTGCTCTCAT-GAG
1 TTTCTGTTCAGCTCTCACGAGCTTCTATTCAACCCTTATAGGTTTTC-GTTCAGCT-TCATAGAG
*
67306676 CTTCTGTTCATCCTTTGGG
64 CTTCTGTTCAACCTTTGGG
67306695 TTTCTG
1 TTTCTG
67306701 ATAACAATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
82 10 0.13
83 7 0.09
84 55 0.73
85 3 0.04
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.47
Consensus pattern (82 bp):
TTTCTGTTCAGCTCTCACGAGCTTCTATTCAACCCTTATAGGTTTTCGTTCAGCTTCATAGAGCT
TCTGTTCAACCTTTGGG
Found at i:67307378 original size:40 final size:40
Alignment explanation
Indices: 67307294--67307384 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 40
67307284 AAAAACTCCG
* * *
67307294 CTATAGATCGAGCATTAGTGGTGCTTCTTGACAAACGCCG
1 CTATAGATCGAGCATTAGCGGTGCTTCTTCACAAACGCCA
* *
67307334 CTATAGATCGATCATTAGCGGTG-TTTTTCA-AGAAGCGCCA
1 CTATAGATCGAGCATTAGCGGTGCTTCTTCACA-AA-CGCCA
*
67307374 CTATAGGTCGA
1 CTATAGATCGA
67307385 CTTTCAGCGG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.02
39 7 0.16
40 35 0.81
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (40 bp):
CTATAGATCGAGCATTAGCGGTGCTTCTTCACAAACGCCA
Found at i:67307517 original size:40 final size:39
Alignment explanation
Indices: 67307460--67307566 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
67307450 AGCTTTAGTG
*
67307460 GCATTAGCGGCGTTTTTTTAAAAACGCCGCTATAGATTGA
1 GCATTAGCGGCG-TTTTTTAAAAACGCCGCTATAGATCGA
* *
67307500 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGGTCGA
1 GCATTAGCGGCG-TTTTTTAAAAACGCCGCTATAGATCGA
* * *
67307540 CCTTTAGCGGTGTTTTTTGAAAAACGC
1 GCATTAGCGGCGTTTTTT-AAAAACGC
67307567 TGCAAAAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 5 0.09
40 53 0.91
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (39 bp):
GCATTAGCGGCGTTTTTTAAAAACGCCGCTATAGATCGA
Found at i:67307783 original size:14 final size:14
Alignment explanation
Indices: 67307738--67307793 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
67307728 TATCATTATA
* *
67307738 GTTTATGGTTTATG
1 GTTTAGGGTTTAAG
* *
67307752 ATTTAGGGTATATA-
1 GTTTAGGGTTTA-AG
67307766 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
*
67307780 GTTTAAGGTTTAAG
1 GTTTAGGGTTTAAG
67307794 AGTTACTATT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
13 1 0.03
14 32 0.97
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:67307845 original size:14 final size:15
Alignment explanation
Indices: 67307818--67307848 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
67307808 AGTTTATGGA
67307818 TTATGGGTTTAGGGG
1 TTATGGGTTTAGGGG
67307833 TTATGGG-TTAGGGG
1 TTATGGGTTTAGGGG
67307847 TT
1 TT
67307849 TACGATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (15 bp):
TTATGGGTTTAGGGG
Found at i:67308636 original size:22 final size:24
Alignment explanation
Indices: 67308605--67308648 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
67308595 TCAGTTAACT
*
67308605 AAAAATTTTTAGC-GA-CAAAATA
1 AAAAAATTTTAGCAGAGCAAAATA
67308627 AAAAAATTTTAGCAGAGCAAAA
1 AAAAAATTTTAGCAGAGCAAAA
67308649 CGACGTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 2 0.11
24 5 0.26
ACGTcount: A:0.57, C:0.09, G:0.11, T:0.23
Consensus pattern (24 bp):
AAAAAATTTTAGCAGAGCAAAATA
Found at i:67311537 original size:5 final size:5
Alignment explanation
Indices: 67311520--67311557 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
67311510 CTCGCTATTC
67311520 ATAAT AT-AT ATAAT ATAAT ATAAT ATAAT AT-AT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
67311558 TAAGTTGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:67311544 original size:19 final size:19
Alignment explanation
Indices: 67311520--67311557 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
67311510 CTCGCTATTC
67311520 ATAATAT-ATATAATATAAT
1 ATAATATAATAT-ATATAAT
67311539 ATAATATAATATATATAAT
1 ATAATATAATATATATAAT
67311558 TAAGTTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATAATATAATATATATAAT
Found at i:67312511 original size:24 final size:24
Alignment explanation
Indices: 67312484--67312535 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
67312474 TTAGTAAGTC
*
67312484 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
67312508 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
67312532 AAAT
1 AAAT
67312536 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:67314681 original size:33 final size:33
Alignment explanation
Indices: 67314644--67314707 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
67314634 AACCCCAAGG
67314644 AGAAAAGAGATTGATAATCGCATATCATATTGC
1 AGAAAAGAGATTGATAATCGCATATCATATTGC
67314677 AGAAAAGAGATTGATAATCGCATATCATATT
1 AGAAAAGAGATTGATAATCGCATATCATATT
67314708 TCAATGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (33 bp):
AGAAAAGAGATTGATAATCGCATATCATATTGC
Found at i:67316624 original size:17 final size:17
Alignment explanation
Indices: 67316602--67316635 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67316592 ATCCACTAAT
*
67316602 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
67316619 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
67316636 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:67321262 original size:17 final size:17
Alignment explanation
Indices: 67321240--67321273 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67321230 ATCCACTAAT
*
67321240 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
67321257 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
67321274 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:67327785 original size:18 final size:18
Alignment explanation
Indices: 67327762--67327854 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
67327752 CCCAACTACT
*
67327762 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
67327780 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
67327798 GTATATGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
67327816 GTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
*
67327834 GTATATGTGAATAGTACC
1 GTATACGTGAATAGTACC
67327852 GTA
1 GTA
67327855 AACGGTCGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:67329365 original size:5 final size:5
Alignment explanation
Indices: 67329355--67329383 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
67329345 ATATTGCTCT
67329355 TTATA TTATA TTATA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTAT
67329384 GCATGCACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:67332932 original size:19 final size:19
Alignment explanation
Indices: 67332891--67332932 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
67332881 TATAAACCGA
* *
67332891 AAATAATATATATATTGTT
1 AAATAATATATATATGGTC
67332910 AAATAATATATA-AGTGGTC
1 AAATAATATATATA-TGGTC
67332929 AAAT
1 AAAT
67332933 TAAATTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (19 bp):
AAATAATATATATATGGTC
Found at i:67333464 original size:33 final size:33
Alignment explanation
Indices: 67333427--67333490 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
67333417 AACCCCAAGG
67333427 AGAAAAGAGATTGATAATCGCATATCATATTGC
1 AGAAAAGAGATTGATAATCGCATATCATATTGC
67333460 AGAAAAGAGATTGATAATCGCATATCATATT
1 AGAAAAGAGATTGATAATCGCATATCATATT
67333491 TCAATGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (33 bp):
AGAAAAGAGATTGATAATCGCATATCATATTGC
Found at i:67341368 original size:30 final size:26
Alignment explanation
Indices: 67341332--67341403 Score: 72
Period size: 30 Copynumber: 2.5 Consensus size: 26
67341322 AATTAGTAAA
67341332 AATAAAATTACACTTTAACCTCTTAAAAAT
1 AATAAAATTA-A-TTTAACCT-TT-AAAAT
67341362 AATAAAAATTTAATTTAACCTTTAAAAT
1 AAT-AAAA-TTAATTTAACCTTTAAAAT
*
67341390 TATAAAATATAATT
1 AATAAAAT-TAATT
67341404 ATTAAAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
26 1 0.03
27 9 0.24
28 7 0.18
29 2 0.05
30 11 0.29
31 5 0.13
32 3 0.08
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATTAATTTAACCTTTAAAAT
Found at i:67341405 original size:13 final size:15
Alignment explanation
Indices: 67341386--67341422 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
67341376 TTAACCTTTA
67341386 AAATTATAAAAT-AT
1 AAATTATAAAATAAT
67341400 -AATTATTAAAATAAT
1 AAATTA-TAAAATAAT
67341415 AAATTATA
1 AAATTATA
67341423 TTTTTACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.25
14 6 0.30
15 4 0.20
16 5 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATTATAAAATAAT
Found at i:67341408 original size:29 final size:30
Alignment explanation
Indices: 67341345--67341403 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 30
67341335 AAAATTACAC
*
67341345 TTTAACCTCTTAAAAATAATAAAAATTTAA
1 TTTAACCTCTTAAAAATAATAAAAATATAA
*
67341375 TTTAACCT-TT-AAAATTAT-AAAATATAA
1 TTTAACCTCTTAAAAATAATAAAAATATAA
67341402 TT
1 TT
67341404 ATTAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 10 0.37
28 7 0.26
29 2 0.07
30 8 0.30
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (30 bp):
TTTAACCTCTTAAAAATAATAAAAATATAA
Found at i:67341411 original size:22 final size:22
Alignment explanation
Indices: 67341383--67341447 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
67341373 AATTTAACCT
67341383 TTAAAATTATAAAATATAATTA
1 TTAAAATTATAAAATATAATTA
* * *
67341405 TTAAAATAATAAATTAT-ATTT
1 TTAAAATTATAAAATATAATTA
*
67341426 TTACAATTATAAAATTATAATT
1 TTAAAATTATAAAA-TATAATT
67341448 TAATTTCTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 14 0.40
22 18 0.51
23 3 0.09
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TTAAAATTATAAAATATAATTA
Found at i:67344917 original size:24 final size:24
Alignment explanation
Indices: 67344875--67344922 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
67344865 AATTTGATTT
* * *
67344875 AATCTTTAAAATTATAAAAATATA
1 AATCATTAAAATAACAAAAATATA
*
67344899 AATCATTAAAATAACAAAATTATA
1 AATCATTAAAATAACAAAAATATA
67344923 TTTTTACAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
AATCATTAAAATAACAAAAATATA
Found at i:67355551 original size:18 final size:18
Alignment explanation
Indices: 67355528--67355620 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
67355518 CCCAACTACT
*
67355528 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
67355546 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
67355564 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
67355582 GTATACGTAAATAGTGCC
1 GTATACGTGAATAGTACC
67355600 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
67355618 GTA
1 GTA
67355621 AACGGTCGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:67355580 original size:36 final size:36
Alignment explanation
Indices: 67355528--67355620 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
67355518 CCCAACTACT
* *
67355528 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
67355564 GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
67355600 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
67355621 AACGGTCGTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
Found at i:67360511 original size:21 final size:21
Alignment explanation
Indices: 67360472--67360512 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67360462 ATAATTGTTT
67360472 TAAAATTTTATTATATAAAAG
1 TAAAATTTTATTATATAAAAG
*
67360493 TAAATATTTTA-TATTTAAAA
1 TAAA-ATTTTATTATATAAAA
67360513 TAATGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAATTTTATTATATAAAAG
Found at i:67362429 original size:3 final size:3
Alignment explanation
Indices: 67362421--67362449 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
67362411 CTGCTTAATA
67362421 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
67362450 CTTTCTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:67377599 original size:44 final size:42
Alignment explanation
Indices: 67377550--67377633 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
67377540 ATATCCTCCC
67377550 ATATCTGAAAATAGAAAAATAAAAATCAAACTAAAGGGAAAAGA
1 ATATCTGAAAATAGAAAAA-AAAAA-CAAACTAAAGGGAAAAGA
** * * *
67377594 ATATCTTCAATTTGATAAAAAAAACAAACTAAAGGGAAAA
1 ATATCTGAAAATAGAAAAAAAAAACAAACTAAAGGGAAAA
67377634 AATGAGGAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 16 0.46
43 5 0.14
44 14 0.40
ACGTcount: A:0.61, C:0.08, G:0.12, T:0.19
Consensus pattern (42 bp):
ATATCTGAAAATAGAAAAAAAAAACAAACTAAAGGGAAAAGA
Found at i:67389505 original size:39 final size:41
Alignment explanation
Indices: 67389446--67389527 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 41
67389436 TCATCAGAGA
67389446 AACACAACATTCAG-AAAA-ACAGATTACACAA-CTACAATC
1 AACACAACATTCAGAAAAACACAGATTACACAATC-ACAATC
* *
67389485 AACATAACATTCAGAAAAACACAGATTATACAATCACAATC
1 AACACAACATTCAGAAAAACACAGATTACACAATCACAATC
67389526 AA
1 AA
67389528 TCCAGGTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
39 13 0.34
40 4 0.11
41 20 0.53
42 1 0.03
ACGTcount: A:0.55, C:0.23, G:0.05, T:0.17
Consensus pattern (41 bp):
AACACAACATTCAGAAAAACACAGATTACACAATCACAATC
Found at i:67390351 original size:20 final size:21
Alignment explanation
Indices: 67390323--67390361 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
67390313 TCATGAATAA
67390323 AAAGCAAAAGAT-TCTTTTCT
1 AAAGCAAAAGATATCTTTTCT
*
67390343 AAAGTAAAAGATATCTTTT
1 AAAGCAAAAGATATCTTTT
67390362 TTTTATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
AAAGCAAAAGATATCTTTTCT
Found at i:67393266 original size:36 final size:36
Alignment explanation
Indices: 67393226--67393307 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
67393216 TTTGCTTTGC
**
67393226 TTCTTGCTCTCCTTCTTTTGCTTGATTTTTTTTTCA
1 TTCTTGCTCTCCGACTTTTGCTTGATTTTTTTTTCA
*
67393262 TTCTTGCTCTTCGACTTTTGCTTGATTTTTTTTTCA
1 TTCTTGCTCTCCGACTTTTGCTTGATTTTTTTTTCA
*
67393298 TTCTTCCTCT
1 TTCTTGCTCT
67393308 ATTGCAAAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.06, C:0.23, G:0.09, T:0.62
Consensus pattern (36 bp):
TTCTTGCTCTCCGACTTTTGCTTGATTTTTTTTTCA
Done.