Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 23 of 216
Found at i:6856855 original size:45 final size:44
Alignment explanation
Indices: 6856790--6856941 Score: 148
Period size: 45 Copynumber: 3.4 Consensus size: 44
6856780 CCCTCGGTTG
* *
6856790 CAGTGAAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACATCGA
1 CAGTGAAGCAGATCGAAGATAGCAGATCTTGCCTTCCT-CATCGA
* * * * *
6856835 CAGAGAAGTAGATCGAAGATA-CTAG-CCTTGCCTCCCTCAGTTG-
1 CAGTGAAGCAGATCGAAGATAGC-AGATCTTGCCTTCCTCA-TCGA
* * * *
6856878 CAGTGGAGCAGGTTGAAGATGGCAGATCTTGCCTTCCTGCATCGA
1 CAGTGAAGCAGATCGAAGATAGCAGATCTTGCCTTCCT-CATCGA
6856923 CAGTGAAGCAGATCGAAGA
1 CAGTGAAGCAGATCGAAGA
6856942 CACTAGCCTT
Statistics
Matches: 82, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
43 19 0.23
44 26 0.32
45 37 0.45
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (44 bp):
CAGTGAAGCAGATCGAAGATAGCAGATCTTGCCTTCCTCATCGA
Found at i:6856861 original size:88 final size:88
Alignment explanation
Indices: 6856753--6856995 Score: 373
Period size: 88 Copynumber: 2.8 Consensus size: 88
6856743 GCAGTAGTGG
6856753 AGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGATC
1 AGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGATC
6856818 TTGCCTTCCTACATCGACAGAGA
66 TTGCCTTCCTACATCGACAGAGA
* * * * *
6856841 AGTAGATCGAAGATACTAGCCTTGCCTCCCTCAGTTGCAGTGGAGCAGGTTGAAGATGGCAGATC
1 AGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGATC
* *
6856906 TTGCCTTCCTGCATCGACAGTGA
66 TTGCCTTCCTACATCGACAGAGA
* *
6856929 AGCAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTGCAG-CAGAGCAGGTTGAAGATTA-CAGA
1 AGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGTGA-AGCAGGTTGAAGA-TAGCAGA
6856992 TCTT
64 TCTT
6856996 ATCTCCTTAA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
88 138 0.99
89 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (88 bp):
AGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGATC
TTGCCTTCCTACATCGACAGAGA
Found at i:6856865 original size:44 final size:43
Alignment explanation
Indices: 6856748--6856955 Score: 154
Period size: 44 Copynumber: 4.7 Consensus size: 43
6856738 TCTAAGCAGT
* * * * *
6856748 AGTGGAGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTG-C
1 AGTGAAGCAGATCGAAGATACTAGCCTTGCCTTCCTC-ATCGAC
* * *
6856791 AGTGAAGCAGGTTGAAGATAGC-AGATCTTGCCTTCCTACATCGAC
1 AGTGAAGCAGATCGAAGATA-CTAG-CCTTGCCTTCCT-CATCGAC
* * * *
6856836 AGAGAAGTAGATCGAAGATACTAGCCTTGCCTCCCTCAGTTG-C
1 AGTGAAGCAGATCGAAGATACTAGCCTTGCCTTCCTCA-TCGAC
* * * * *
6856879 AGTGGAGCAGGTTGAAGATGGC-AGATCTTGCCTTCCTGCATCGAC
1 AGTGAAGCAGATCGAAGAT-ACTAG-CCTTGCCTTCCT-CATCGAC
*
6856924 AGTGAAGCAGATCGAAGACACTAGCCTTGCCT
1 AGTGAAGCAGATCGAAGATACTAGCCTTGCCT
6856956 CCCTGGGTTG
Statistics
Matches: 124, Mismatches: 30, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
43 37 0.30
44 47 0.38
45 40 0.32
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (43 bp):
AGTGAAGCAGATCGAAGATACTAGCCTTGCCTTCCTCATCGAC
Found at i:6857135 original size:44 final size:44
Alignment explanation
Indices: 6856981--6857729 Score: 195
Period size: 44 Copynumber: 17.0 Consensus size: 44
6856971 GAGCAGGTTG
* * *
6856981 AAGATTACAGATCTTATCTCCTTAAGAAGTAATGGAGCAGATCA
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
* * * * * * * * * *
6857025 AAGACCCCAG-CCTTGTCTCCCTGAGCAGCAGTGGAGTATATTGAAA
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGA-T--CA
* *
6857071 AACATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
** * * **
6857115 AAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGTAGCAGATTG
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
* * * * ** * * *
6857159 AAG-CCAAAAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTA
1 AAGATCACAGATCTTATCTCCCT-AAGAAGTAGTGGAGCAGATCA
* * * *
6857203 AA-ATAAAAGATCTTATCTCTCT-A-AAGT--T--A-CAG-TAA
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
* ** * * *
6857238 AGTAGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACCA
1 A--AGAT--CA-CAGATCTTATCTCCCT-AAGAAGTAGTGGAGCAGATCA
* * **
6857288 AAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTG
1 AAG-ATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
* * * * * * * * * * *
6857333 AAGACCCCAG-CCTTGTCTCCCTGAGCAGCAATGGAGTAGGTTGA
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCA-GATCA
* * * * *
6857377 AA-ATTACAGATCTTATCTTCCTAAGCAGTAGTTGAGCAGATCG
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
* * * * * * * * * *
6857420 AAGACCCCAG-CCTTGTCTCCCTAAGCAGCAGTAGAGTAGGTTGAAA
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCA-GAT--CA
* * * *
6857466 AACATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
* * * * * * * * * *
6857510 AAGACCCCAG-CCTTGTCTCCTTAAGCAGCAGTGGAGTAGGTTGA
1 AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCA-GATCA
* * * *
6857554 AAGACATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 AAG--ATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
* ** ** ** ** * *
6857600 AAGA-CCCTA-CCCTTGCCTCCCTGGGTTGCAGTGGAGCAGACCGA
1 AAGATCAC-AGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATC-A
* * * * *
6857644 ATA-ATTACAGATCTTATCTCCCTAAGCAGTAGTTGAGAAGATCG
1 A-AGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
** * *
6857688 AAGATGGCA-ACTCTTATCTCCCTAAGCAGTAGTGGAGAAGAT
1 AAGATCACAGA-TCTTATCTCCCTAAGAAGTAGTGGAGCAGAT
6857730 TGAAGCCAGT
Statistics
Matches: 486, Mismatches: 179, Indels: 80
0.65 0.24 0.11
Matches are distributed among these distances:
35 3 0.01
36 2 0.00
37 2 0.00
38 2 0.00
39 1 0.00
40 1 0.00
41 14 0.03
42 1 0.00
43 135 0.28
44 166 0.34
45 40 0.08
46 39 0.08
47 70 0.14
48 3 0.01
49 5 0.01
50 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (44 bp):
AAGATCACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCA
Found at i:6857382 original size:87 final size:89
Alignment explanation
Indices: 6857287--6857733 Score: 567
Period size: 90 Copynumber: 5.0 Consensus size: 89
6857277 GGAGCAGACC
*
6857287 AAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCCCAGCCTTGTCTC
1 AAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAGCCTTGTCTC
* *
6857352 CCTGAGCAGCAATGGAGTAGGTTG
66 CCTAAGCAGCAGTGGAGTAGGTTG
* *
6857376 -AA-AATTACAGATCTTATCTTCCTAAGCAGTAGTTGAGCAGATCGAAGACCCCAGCCTTGTCTC
1 AAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAGCCTTGTCTC
*
6857439 CCTAAGCAGCAGTAGAGTAGGTTG
66 CCTAAGCAGCAGTGGAGTAGGTTG
*
6857463 AAAAACATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAGCCTTGTCT
1 AAAGA-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAGCCTTGTCT
*
6857528 CCTTAAGCAGCAGTGGAGTAGGTTG
65 CCCTAAGCAGCAGTGGAGTAGGTTG
* * * *
6857553 AAAGACATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCTACCCTTGCCT
1 AAAGA-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAGCCTTGTCT
** ** * ***
6857618 CCCTGGGTTGCAGTGGAGCAGACCG
65 CCCTAAGCAGCAGTGGAGTAGGTTG
* * * *** * *
6857643 -AATAATTACAGATCTTATCTCCCTAAGCAGTAGTTGAGAAGATCGAAGATGGCAACTCTTATCT
1 AAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAGC-CTTGTCT
* * *
6857707 CCCTAAGCAGTAGTGGAGAAGATTG
65 CCCTAAGCAGCAGTGGAGTAGGTTG
6857732 AA
1 AA
6857734 GCCAGTAATC
Statistics
Matches: 310, Mismatches: 43, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
87 79 0.25
88 48 0.15
89 26 0.08
90 157 0.51
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (89 bp):
AAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAGCCTTGTCTC
CCTAAGCAGCAGTGGAGTAGGTTG
Found at i:6857500 original size:177 final size:178
Alignment explanation
Indices: 6857278--6857691 Score: 575
Period size: 177 Copynumber: 2.3 Consensus size: 178
6857268 AGTTGCAGCG
*
6857278 GAGCAGACC-AAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCCCA
1 GAGCAGACCGAAA-AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCA
* *
6857342 GCCTTGTCTCCCTGAGCAGCAATGGAGTAGGTTG-AA-A-ATTACAGATCTTATCTTCCTAAGCA
65 GCCTTGTCTCCCTAAGCAGCAATGGAGTAGGTTGAAAGACATTACAGATCTTATCTCCCTAAGCA
* * *
6857404 GTAGTTGAGCAGATCGAAGACCCCAGCCTTGTCTCCCTAAGCAGCAGTA
130 GTAGTGGAGCAGATCGAAGACCCCACCCTTGCCTCCCTAAGCAGCAGTA
* ***
6857453 GAGTAGGTTGAAAAACATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCC
1 GAGCAGACCG-AAAA-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCC
* * *
6857518 AGCCTTGTCTCCTTAAGCAGCAGTGGAGTAGGTTGAAAGACATTATAGATCTTATCTCCCTAAGC
64 AGCCTTGTCTCCCTAAGCAGCAATGGAGTAGGTTGAAAGACATTACAGATCTTATCTCCCTAAGC
* ** ** *
6857583 AGTAGTGGAGCAGATCGAAGACCCTACCCTTGCCTCCCTGGGTTGCAGTG
129 AGTAGTGGAGCAGATCGAAGACCCCACCCTTGCCTCCCTAAGCAGCAGTA
* * *
6857633 GAGCAGACCGAATAATTACAGATCTTATCTCCCTAAGCAGTAGTTGAGAAGATCGAAGA
1 GAGCAGACCGAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
6857692 TGGCAACTCT
Statistics
Matches: 207, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
175 5 0.02
176 1 0.00
177 83 0.40
178 45 0.22
179 4 0.02
180 69 0.33
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (178 bp):
GAGCAGACCGAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCCAG
CCTTGTCTCCCTAAGCAGCAATGGAGTAGGTTGAAAGACATTACAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACCCCACCCTTGCCTCCCTAAGCAGCAGTA
Found at i:6865931 original size:22 final size:22
Alignment explanation
Indices: 6865884--6865929 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
6865874 AATCAAGAAC
6865884 TTTATTAAACTTTTTTTAAAAT
1 TTTATTAAACTTTTTTTAAAAT
*
6865906 TTTATT-AA-TTTTATTTATAAT
1 TTTATTAAACTTTT-TTTAAAAT
6865927 TTT
1 TTT
6865930 TAAACATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 4 0.18
21 12 0.55
22 6 0.27
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTATTAAACTTTTTTTAAAAT
Found at i:6868106 original size:25 final size:23
Alignment explanation
Indices: 6868016--6868100 Score: 129
Period size: 25 Copynumber: 3.7 Consensus size: 23
6868006 ATGGAGGCAA
*
6868016 ACTTAACCAAAGTTAAATATCTT
1 ACTTAACCAAAGTTAAAAATCTT
6868039 ACTTAACCAAAGTT--AAATCTT
1 ACTTAACCAAAGTTAAAAATCTT
6868060 ACTTAACCAAAGTTTACAAAATCTT
1 ACTTAACCAAAG-TTA-AAAATCTT
6868085 ACTTAACCAAAGTTAA
1 ACTTAACCAAAGTTAA
6868101 CAAAATGGCA
Statistics
Matches: 57, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
21 18 0.32
22 2 0.04
23 15 0.26
24 3 0.05
25 19 0.33
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.32
Consensus pattern (23 bp):
ACTTAACCAAAGTTAAAAATCTT
Found at i:6869413 original size:38 final size:38
Alignment explanation
Indices: 6869362--6869437 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
6869352 GATTAGAATC
* ** *
6869362 TTAAAAGAAAAAGAATCTTTAGCTCATTTAAAGGATGA
1 TTAAAAGAAAAAGAATCCTTAAATCATTTAAAAGATGA
6869400 TTAAAAGAAAAAGAATCCTTAAATCATTTAAAAGATGA
1 TTAAAAGAAAAAGAATCCTTAAATCATTTAAAAGATGA
6869438 GTAGATTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (38 bp):
TTAAAAGAAAAAGAATCCTTAAATCATTTAAAAGATGA
Found at i:6873048 original size:50 final size:50
Alignment explanation
Indices: 6872933--6873181 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
6872923 GATTATAACA
* * ** * *
6872933 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCGG
*
6872984 TGCCCAA-GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TG-CCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
6873034 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
6873084 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
6873139 ATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
6873182 TTACCCAAAT
Statistics
Matches: 171, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
49 4 0.02
50 90 0.53
51 30 0.18
52 4 0.02
53 2 0.01
54 1 0.01
55 1 0.01
56 39 0.23
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:6873120 original size:100 final size:104
Alignment explanation
Indices: 6872932--6873181 Score: 328
Period size: 100 Copynumber: 2.4 Consensus size: 104
6872922 TGATTATAAC
** * **
6872932 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGGTGCCCAAGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCAGTGCCCAAGCCATG
* *
6872997 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * *
6873034 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCAGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCCAAGCCATGT
6873098 CCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* * *
6873139 ATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6873182 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
100 48 0.37
101 36 0.28
103 3 0.02
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCCAAGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:6873297 original size:13 final size:13
Alignment explanation
Indices: 6873276--6873307 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6873266 GCTTGGATCA
*
6873276 TCATCAAATAAAT
1 TCATAAAATAAAT
6873289 TCATAAAATAAAT
1 TCATAAAATAAAT
6873302 TCATAA
1 TCATAA
6873308 TTTCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:6873553 original size:29 final size:30
Alignment explanation
Indices: 6873519--6873575 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
6873509 CCTCGACTCT
*
6873519 AACTTTTTCAAAATTACAATTTT-CCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
6873548 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
6873576 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:6878333 original size:21 final size:22
Alignment explanation
Indices: 6878274--6878333 Score: 52
Period size: 21 Copynumber: 2.8 Consensus size: 22
6878264 TCAGAAGCAT
* * *
6878274 ATACAACACATAAAGTGCCTGA
1 ATACGACACATATAGTGCCTCA
** *
6878296 A-ACGACACACGTGGTGCC-CA
1 ATACGACACATATAGTGCCTCA
6878316 ATACGACACATATAGTGC
1 ATACGACACATATAGTGC
6878334 TTGATCGGCA
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
20 2 0.07
21 25 0.89
22 1 0.04
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.17
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTCA
Found at i:6882588 original size:12 final size:12
Alignment explanation
Indices: 6882571--6882601 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
6882561 TAGGTAAATA
6882571 ATATATATACAT
1 ATATATATACAT
6882583 ATATATATACAT
1 ATATATATACAT
6882595 ATATATA
1 ATATATA
6882602 ACTTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATATACAT
Found at i:6884234 original size:44 final size:44
Alignment explanation
Indices: 6884186--6884305 Score: 160
Period size: 40 Copynumber: 2.8 Consensus size: 44
6884176 ATCTTCGACT
* * *
6884186 TGCTCCACTATTGCTTAGGGAGATAAGATCTGGTTTCTTTCG-TC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTATGT-GATC
*
6884230 TGCTCCACTACTGCTTAGGGAGATAAGA-C---TTGATGTGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTATGTGATC
6884270 TGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTT
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTT
6884306 TCTTCACTCT
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
39 1 0.02
40 34 0.52
41 1 0.02
43 1 0.02
44 29 0.44
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (44 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTATGTGATC
Found at i:6885005 original size:134 final size:134
Alignment explanation
Indices: 6884306--6885656 Score: 2357
Period size: 134 Copynumber: 10.1 Consensus size: 134
6884296 GATCTGGTTT
* * * *
6884306 TCTTCACTCTATTCTACTGCGCAAACACAGGGAGATAGAGTTATCGGCTTCAATGCACTCCACTG
1 TCTTCAATCTATTCCACTGC-CAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
6884371 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
65 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
6884436 TGCAA
130 TGCAA
* *
6884441 TCTTTCAATTTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTGACTCCTCT
1 TC-TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGT-ACTCCACT
* *
6884506 GTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAGACAAGAT
64 GTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
6884571 CTGCAA
129 CTGCAA
*
6884577 TCTTCAATCTCATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 TCTTCAATCT-ATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
6884642 TAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
65 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
6884707 TGCAA
130 TGCAA
* * *
6884712 TCTTCAATCTATTCCACTGCC-AA-CCAGGGAGATAGAGTTATTGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* * * *
6884775 AGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTACTCTGCCAAATACAGGAAGTCAAGATC
66 AGTCAGGGAGGTAAAATCTGCCATC-TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
6884840 TGCAA
130 TGCAA
6884845 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
6884910 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
6884975 GCAA
131 GCAA
*
6884979 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
*
6885044 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATATAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
6885109 GCAA
131 GCAA
*
6885113 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
6885178 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
6885243 GCAA
131 GCAA
*
6885247 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
*
6885312 AGTCAGGGAGGTAAAATCTTGCCATCTTCGATATGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 AGTCAGGGAGGTAAAATC-TGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
6885377 TGCAA
130 TGCAA
*
6885382 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTAT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
*
6885447 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCTAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
*
6885512 ACAA
131 GCAA
*
6885516 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTAT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* *
6885581 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGGTCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
6885646 G-ATA
131 GCA-A
6885650 TCTTCAA
1 TCTTCAA
6885657 CCAGCTCTAC
Statistics
Matches: 1163, Mismatches: 45, Indels: 17
0.95 0.04 0.01
Matches are distributed among these distances:
132 60 0.05
133 63 0.05
134 584 0.50
135 319 0.27
136 137 0.12
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (134 bp):
TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
GCAA
Found at i:6885200 original size:403 final size:402
Alignment explanation
Indices: 6884306--6885656 Score: 2366
Period size: 403 Copynumber: 3.4 Consensus size: 402
6884296 GATCTGGTTT
* * * *
6884306 TCTTCACTCTATTCTACTGCGCAAACACAGGGAGATAGAGTTATCGGCTTCAATGCACTCCACTG
1 TCTTCAATCTATTCCACTGC-CAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
6884371 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
65 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
6884436 TGCAATCTTTCAATTTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTGACT
130 TGCAATC-TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGT-ACT
* *
6884501 CCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAGAC
193 CCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGC
*
6884566 AAGATCTGCAATCTTCAATCTCATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAAT
258 AAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAAT
* *
6884631 GTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGG
322 GTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGG
6884696 AAGGCAAGATCTGCAA
387 AAGGCAAGATCTGCAA
* * *
6884712 TCTTCAATCTATTCCACTGCC-AA-CCAGGGAGATAGAGTTATTGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* * * *
6884775 AGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTACTCTGCCAAATACAGGAAGTCAAGATC
66 AGTCAGGGAGGTAAAATCTGCCATC-TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
6884840 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
130 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
*
6884905 ACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
195 TCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
6884970 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
260 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
* *
6885035 CTCCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATATAGGAAG
325 CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAG
6885100 GCAAGATCTGCAA
390 GCAAGATCTGCAA
*
6885113 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
6885178 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
6885243 GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCT
131 GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCT
*
6885308 CTGTAGTCAGGGAGGTAAAATCTTGCCATCTTCGATATGCTTCGCTGCCAAATACAGGAAGGCAA
196 CTGTAGTCAGGGAGGTAAAATC-TGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
6885373 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
260 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
* *
6885438 CTCCACTATAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCTAAATACAGGAAG
325 CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAG
*
6885503 GCAAGATCTACAA
390 GCAAGATCTGCAA
*
6885516 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTAT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* *
6885581 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGGTCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
6885646 G-ATATCTTCAA
131 GCA-ATCTTCAA
6885657 CCAGCTCTAC
Statistics
Matches: 904, Mismatches: 36, Indels: 13
0.95 0.04 0.01
Matches are distributed among these distances:
401 140 0.15
402 211 0.23
403 490 0.54
404 44 0.05
405 1 0.00
406 18 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (402 bp):
TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCT
CTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAG
ATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTAC
TCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGG
CAAGATCTGCAA
Found at i:6885392 original size:537 final size:536
Alignment explanation
Indices: 6884306--6885656 Score: 2384
Period size: 537 Copynumber: 2.5 Consensus size: 536
6884296 GATCTGGTTT
* * * *
6884306 TCTTCACTCTATTCTACTGCGCAAACACAGGGAGATAGAGTTATCGGCTTCAATGCACTCCACTG
1 TCTTCAATCTATTCCACTGC-CAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
6884371 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
65 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
6884436 TGCAATCTTTCAATTTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTGACT
130 TGCAATC-TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGT-ACT
* *
6884501 CCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAGAC
193 CCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGC
6884566 AAGATCTGCAATCTTCAATCTCATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAAT
258 AAGATCTGCAATCTTCAATCTCATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAAT
6884631 GTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGG
323 GTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGG
* *
6884696 AAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAGTTATTGGCTTCA
388 AAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAACAGGGAGATAGAGTTATCGGCTTCA
* * *
6884761 ATGTACTCCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTACTCTGCCAAATAC
453 ATGTACTCCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTTCGATATGCTACGCTGCCAAATAC
*
6884826 AGGAAGTCAAGATCTGCAA
518 AGGAAGGCAAGATCTGCAA
6884845 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
6884910 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
6884975 GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCT
131 GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCT
*
6885040 CTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATATAGGAAGGCAAG
196 CTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAG
*
6885105 ATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
261 ATCTGCAATCTTCAATCTCATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTA
* * *
6885169 CTCCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAG
326 CTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAG
6885234 GCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAA
391 GCAAGATCTGCAATCTTCAATCTATTCCACTGCC-AA-ACAGGGAGATAGAGTTATCGGCTTCAA
*
6885299 TGTACTCCTCTGTAGTCAGGGAGGTAAAATCTTGCCATC-TTCGATATGCTTCGCTGCCAAATAC
454 TGTACTCCTCTGTAGTCAGGGAGGTAAAATC-TGCCATCTTTCGATATGCTACGCTGCCAAATAC
6885363 AGGAAGGCAAGATCTGCAA
518 AGGAAGGCAAGATCTGCAA
*
6885382 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTAT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
*
6885447 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCTAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
* *
6885512 ACAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCA
131 GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCT
* *
6885577 CTATAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAG
196 CTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAG
*
6885642 GTCTG-ATATCTTCAA
261 ATCTGCA-ATCTTCAA
6885657 CCAGCTCTAC
Statistics
Matches: 781, Mismatches: 27, Indels: 10
0.95 0.03 0.01
Matches are distributed among these distances:
535 141 0.18
536 89 0.11
537 412 0.53
538 121 0.15
539 18 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (536 bp):
TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
GCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCT
CTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAG
ATCTGCAATCTTCAATCTCATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTA
CTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAG
GCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAACAGGGAGATAGAGTTATCGGCTTCAATG
TACTCCTCTGTAGTCAGGGAGGTAAAATCTGCCATCTTTCGATATGCTACGCTGCCAAATACAGG
AAGGCAAGATCTGCAA
Found at i:6885703 original size:86 final size:86
Alignment explanation
Indices: 6885604--6885952 Score: 538
Period size: 86 Copynumber: 4.1 Consensus size: 86
6885594 AAATCTGCCA
* * * *
6885604 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGGTCTGATATCTTCAACCAGCTCTACTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
6885669 CAAACGA-AGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* *
6885690 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
6885755 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
6885776 TGTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
6885841 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* * *
6885862 TCTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
6885927 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
6885948 TCTTC
1 TCTTC
6885953 AATTTTTACT
Statistics
Matches: 244, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
85 45 0.18
86 199 0.82
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:6885898 original size:42 final size:42
Alignment explanation
Indices: 6885678--6885898 Score: 98
Period size: 42 Copynumber: 5.2 Consensus size: 42
6885668 ACAAACGAAG
* *
6885678 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCACTGTCAATGCAGGA
* * * * * * *
6885720 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-ACTGTCAATGCAG-GA
* * *
6885763 GTGGCAAGGTTTGTGTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCACTGTCAATGCAGGA
* * * * * * *
6885806 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-ACTGTCAATGCAG-GA
*
6885849 GTGGCAAGGTTTGTCTTCGATCTGCTTCACTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCACTGTCAATGCAGGA
6885892 AGGCAAG
1 AGGCAAG
6885899 ATCTGATAAC
Statistics
Matches: 121, Mismatches: 38, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
41 24 0.20
42 33 0.27
43 16 0.13
44 25 0.21
45 23 0.19
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCACTGTCAATGCAGGA
Found at i:6890103 original size:19 final size:20
Alignment explanation
Indices: 6890079--6890122 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
6890069 CGTGAAAGTC
* *
6890079 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
6890098 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
6890118 -AATGC
1 TAATGC
6890123 CAAAAGAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:6892474 original size:10 final size:10
Alignment explanation
Indices: 6892459--6892487 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
6892449 TAGGTAAATA
6892459 ATATATATAC
1 ATATATATAC
6892469 ATATATATAC
1 ATATATATAC
6892479 ATATATATA
1 ATATATATA
6892488 ACTTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:6894036 original size:20 final size:20
Alignment explanation
Indices: 6894011--6894068 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
6894001 ATTTTTCTTT
*
6894011 AATTATTGAAAAAGTTTAAA
1 AATTATTAAAAAAGTTTAAA
* *
6894031 AATTA-TAAAAAAATTAATAA
1 AATTATTAAAAAAGTTTA-AA
6894051 AATT-TTAAAAAAGTTTAA
1 AATTATTAAAAAAGTTTAA
6894069 TAAAGTTCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 10 0.32
20 21 0.68
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
AATTATTAAAAAAGTTTAAA
Found at i:6899117 original size:13 final size:13
Alignment explanation
Indices: 6899099--6899123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6899089 AGCAAATACA
6899099 TTCAAATAGTCAT
1 TTCAAATAGTCAT
6899112 TTCAAATAGTCA
1 TTCAAATAGTCA
6899124 AATAGTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
TTCAAATAGTCAT
Found at i:6901407 original size:39 final size:41
Alignment explanation
Indices: 6901321--6901408 Score: 99
Period size: 42 Copynumber: 2.2 Consensus size: 41
6901311 ATTTTCTCCG
* * * *
6901321 AAATCGCGTCCACGTCAGCGCGATGTCAAGGGACGTGTCAGC
1 AAATCGCGTCCACGTCAGCACGATGT-AACGGACGTGGCAAC
**
6901363 AAATCGCGTCCACGTCAGCACGAT-T-ACTTACGTGGCAAC
1 AAATCGCGTCCACGTCAGCACGATGTAACGGACGTGGCAAC
6901402 AAATCGC
1 AAATCGC
6901409 ATCCCAGCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
39 16 0.40
41 1 0.03
42 23 0.57
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (41 bp):
AAATCGCGTCCACGTCAGCACGATGTAACGGACGTGGCAAC
Found at i:6908421 original size:78 final size:78
Alignment explanation
Indices: 6908286--6908442 Score: 278
Period size: 78 Copynumber: 2.0 Consensus size: 78
6908276 GAGTCTTTTT
* *
6908286 CAGGAGACCATGGCCCTTTCTTCAGATTTGCTGTGTCACAACAAGGAACTCTTCCCATTTCTCTA
1 CAGGAGACCATGGCCCTTTCTTCACATTTGCTGTGTCACAACAAGGAACTCTCCCCATTTCTCTA
6908351 TATAATCCTTCAG
66 TATAATCCTTCAG
* *
6908364 CAGGAGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGAGCTCTCCCCATTTCTCTA
1 CAGGAGACCATGGCCCTTTCTTCACATTTGCTGTGTCACAACAAGGAACTCTCCCCATTTCTCTA
6908429 TATAATCCTTCAG
66 TATAATCCTTCAG
6908442 C
1 C
6908443 TTAGATTTAC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.32
Consensus pattern (78 bp):
CAGGAGACCATGGCCCTTTCTTCACATTTGCTGTGTCACAACAAGGAACTCTCCCCATTTCTCTA
TATAATCCTTCAG
Found at i:6910476 original size:31 final size:31
Alignment explanation
Indices: 6910438--6910503 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
6910428 AAAAACAAAA
*
6910438 TTCAGACATACAATTGCGAAAAGATTCAATT
1 TTCAGACATACAACTGCGAAAAGATTCAATT
*
6910469 TTCAGACATACAACTGCGAGAAGATTCAATT
1 TTCAGACATACAACTGCGAAAAGATTCAATT
6910500 TTCA
1 TTCA
6910504 CCGCAGTACC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (31 bp):
TTCAGACATACAACTGCGAAAAGATTCAATT
Found at i:6918391 original size:7 final size:7
Alignment explanation
Indices: 6918379--6918405 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
6918369 GGTTTGTCTC
6918379 GATTTGG
1 GATTTGG
6918386 GATTTGG
1 GATTTGG
6918393 GATTTGG
1 GATTTGG
6918400 GATTTG
1 GATTTG
6918406 AGAATTCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
GATTTGG
Found at i:6919613 original size:25 final size:24
Alignment explanation
Indices: 6919576--6919623 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
6919566 TTTCGATATA
*
6919576 TTAAATTATTAAAATTCTTTACAAT
1 TTAAATTACTAAAATTC-TTACAAT
*
6919601 TTAACTTACTAAAATTCTTACAA
1 TTAAATTACTAAAATTCTTACAA
6919624 AATTGTTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (24 bp):
TTAAATTACTAAAATTCTTACAAT
Found at i:6923988 original size:11 final size:11
Alignment explanation
Indices: 6923973--6924009 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
6923963 TTAATCAAGT
*
6923973 ATATATATTTT
1 ATATATATTTA
*
6923984 ATATATATTAA
1 ATATATATTTA
6923995 ATATATATTTA
1 ATATATATTTA
6924006 ATAT
1 ATAT
6924010 GGACAGGGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATATATATTTA
Found at i:6936397 original size:30 final size:29
Alignment explanation
Indices: 6936334--6936450 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 29
6936324 TAAAAAATAA
* *
6936334 AAATTGCATTTTGACACCTAAACTTT-TCCT
1 AAATTTCATTTTGAC-CCTAAACTTTCT-TT
6936364 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCTTT
* * *
6936394 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAACTTTCTTT
* * *
6936424 AAATTTCATTTTAATCCTAAATTTTCT
1 AAATTTCATTTTGACCCTAAACTTTCT
6936451 AAAAATTACA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 12 0.16
30 57 0.78
31 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCTTT
Found at i:6936717 original size:10 final size:10
Alignment explanation
Indices: 6936698--6936747 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
6936688 TTTTTCGAAG
*
6936698 GAAAAAAGAA
1 GAAAAGAGAA
6936708 GAAAAGAGAA
1 GAAAAGAGAA
6936718 GAAAAGAGAA
1 GAAAAGAGAA
* *
6936728 -AGAGGAGAA
1 GAAAAGAGAA
6936737 GAAAAGA-AA
1 GAAAAGAGAA
6936746 GA
1 GA
6936748 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:6936748 original size:17 final size:19
Alignment explanation
Indices: 6936701--6936743 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
6936691 TTCGAAGGAA
6936701 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
6936719 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
6936738 AAAAGA
1 AAAAGA
6936744 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:6936831 original size:17 final size:17
Alignment explanation
Indices: 6936804--6936856 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
6936794 CTAGACTTTG
6936804 AAGAA-GAAGAAGGAAA
1 AAGAAGGAAGAAGGAAA
6936820 AAGAAGGAAGAA-G-AA
1 AAGAAGGAAGAAGGAAA
*
6936835 AAG-AGGAAGAAGAAAGA
1 AAGAAGGAAGAAGGAA-A
6936852 AAGAA
1 AAGAA
6936857 AAAAAAAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
14 8 0.26
15 5 0.16
16 7 0.23
17 10 0.32
18 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AAGAAGGAAGAAGGAAA
Found at i:6936841 original size:14 final size:14
Alignment explanation
Indices: 6936804--6936849 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
6936794 CTAGACTTTG
*
6936804 AAGAAGAAGAAGGAAA
1 AAGAGGAAGAA-G-AA
6936820 AAGAAGGAAGAAGAA
1 AAG-AGGAAGAAGAA
6936835 AAGAGGAAGAAGAA
1 AAGAGGAAGAAGAA
6936849 A
1 A
6936850 GAAAGAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 12 0.43
15 5 0.18
16 4 0.14
17 7 0.25
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (14 bp):
AAGAGGAAGAAGAA
Found at i:6936860 original size:24 final size:24
Alignment explanation
Indices: 6936803--6936861 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
6936793 GCTAGACTTT
*
6936803 GAAGAAGAAGAAGGAAAAAGAAGGAA
1 GAAGAA-AAG-AGGAAAAAGAAGAAA
*
6936829 GAAGAAAAGAGGAAGAAGAAAGAAA
1 GAAGAAAAGAGGAAAAAG-AAGAAA
*
6936854 GAAAAAAA
1 GAAGAAAA
6936862 AAAGAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 8 0.28
25 15 0.52
26 6 0.21
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (24 bp):
GAAGAAAAGAGGAAAAAGAAGAAA
Found at i:6937003 original size:11 final size:12
Alignment explanation
Indices: 6936983--6937007 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6936973 AAAAAAAATC
6936983 AAAGCAAAAAAA
1 AAAGCAAAAAAA
6936995 AAAGCAAAAAAA
1 AAAGCAAAAAAA
6937007 A
1 A
6937008 GAAGGGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGCAAAAAAA
Found at i:6937158 original size:15 final size:14
Alignment explanation
Indices: 6937138--6937207 Score: 77
Period size: 15 Copynumber: 4.6 Consensus size: 14
6937128 GCAGCCCAGC
*
6937138 AGAAAAAAAAAAGGA
1 AGAAAAAAAAAA-AA
6937153 AGAAAAAGAAGAAAAA
1 AGAAAAA-AA-AAAAA
6937169 AGAAAAAAGAAAAAA
1 AGAAAAAA-AAAAAA
*
6937184 GGAAAAAAGAAAAAA
1 AGAAAAAA-AAAAAA
6937199 AGAAAAAAA
1 AGAAAAAAA
6937208 GAAGAAAAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
14 1 0.02
15 34 0.69
16 11 0.22
17 3 0.06
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AGAAAAAAAAAAAA
Found at i:6937173 original size:7 final size:7
Alignment explanation
Indices: 6937138--6937206 Score: 77
Period size: 7 Copynumber: 9.1 Consensus size: 7
6937128 GCAGCCCAGC
6937138 AGAAAAA
1 AGAAAAA
6937145 A-AAAAGGA
1 AGAAAA--A
6937153 AGAAAAAGA
1 AG-AAAA-A
6937162 AGAAAAA
1 AGAAAAA
6937169 AGAAAAA
1 AGAAAAA
6937176 AGAAAAA
1 AGAAAAA
6937183 AGGAAAAA
1 A-GAAAAA
6937191 AGAAAAAA
1 AG-AAAAA
6937199 AGAAAAA
1 AGAAAAA
6937206 A
1 A
6937207 AGAAGAAAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
6 4 0.07
7 24 0.43
8 20 0.36
9 4 0.07
10 4 0.07
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Found at i:6937175 original size:8 final size:8
Alignment explanation
Indices: 6937138--6937217 Score: 87
Period size: 8 Copynumber: 10.2 Consensus size: 8
6937128 GCAGCCCAGC
6937138 AGAAAAAA
1 AGAAAAAA
**
6937146 A-AAAGGA
1 AGAAAAAA
6937153 AGAAAAAGA
1 AGAAAAA-A
6937162 AG-AAAAA
1 AGAAAAAA
6937169 AG-AAAAA
1 AGAAAAAA
6937176 AG-AAAAA
1 AGAAAAAA
*
6937183 AGGAAAAA
1 AGAAAAAA
6937191 AGAAAAAA
1 AGAAAAAA
6937199 AGAAAAAA
1 AGAAAAAA
6937207 AGAAGAAAA
1 AGAA-AAAA
6937216 AG
1 AG
6937218 GGGGTTCAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
7 22 0.35
8 32 0.51
9 9 0.14
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AGAAAAAA
Found at i:6937831 original size:37 final size:37
Alignment explanation
Indices: 6937758--6937831 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
6937748 GAAATTTTCG
* * * *
6937758 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
6937795 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
6937832 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:6937903 original size:17 final size:18
Alignment explanation
Indices: 6937877--6937954 Score: 69
Period size: 17 Copynumber: 4.6 Consensus size: 18
6937867 ATCCTCGTGC
6937877 TTTT-AAAAATTCTCATG
1 TTTTCAAAAATTCTCATG
*
6937894 -TTTCAAAAA-TCTTCGTG
1 TTTTCAAAAATTC-TCATG
6937911 TTTTC-AAAATTCT-A-G
1 TTTTCAAAAATTCTCATG
* *
6937926 TGTTTCAAAAATTTTCTTG
1 T-TTTCAAAAATTCTCATG
6937945 TTTTCAAAAA
1 TTTTCAAAAA
6937955 AAAAATTTCG
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
15 2 0.04
16 9 0.18
17 21 0.43
18 15 0.31
19 2 0.04
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTTCAAAAATTCTCATG
Found at i:6937930 original size:34 final size:34
Alignment explanation
Indices: 6937859--6937953 Score: 120
Period size: 34 Copynumber: 2.8 Consensus size: 34
6937849 ATCTTCGTGC
* * *
6937859 TTTCAATAATCCTCGTGCTTTTAAAAATTCTCATG
1 TTTCAAAAATCTTCGTG-TTTTCAAAATTCTCATG
6937894 TTTCAAAAATCTTCGTGTTTTCAAAATTCT-AGTG
1 TTTCAAAAATCTTCGTGTTTTCAAAATTCTCA-TG
* *
6937928 TTTCAAAAATTTTCTTGTTTTCAAAA
1 TTTCAAAAATCTTCGTGTTTTCAAAA
6937954 AAAAAATTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
33 1 0.02
34 38 0.70
35 15 0.28
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (34 bp):
TTTCAAAAATCTTCGTGTTTTCAAAATTCTCATG
Found at i:6937933 original size:16 final size:16
Alignment explanation
Indices: 6937882--6937935 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
6937872 CGTGCTTTTA
6937882 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
6937898 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
6937916 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
6937932 AAAA
1 AAAA
6937936 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:6937959 original size:23 final size:22
Alignment explanation
Indices: 6937932--6937998 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 22
6937922 CTAGTGTTTC
*
6937932 AAAAATTTTCTTGTTTTCAAAAA
1 AAAAATTTTCGTGTTTT-AAAAA
6937955 AAAAA-TTTCGTGTTTTAAAAA
1 AAAAATTTTCGTGTTTTAAAAA
*
6937976 AAAATATTTCCGTGTTTTAAAAA
1 AAAA-ATTTTCGTGTTTTAAAAA
6937999 TTTTTCGTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.22
22 11 0.28
23 20 0.50
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
AAAAATTTTCGTGTTTTAAAAA
Found at i:6937963 original size:22 final size:21
Alignment explanation
Indices: 6937932--6937998 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 21
6937922 CTAGTGTTTC
* *
6937932 AAAAATTTTCTTGTTTTCAAAA
1 AAAAAATTTCGTGTTTT-AAAA
6937954 AAAAAATTTCGTGTTTTAAAA
1 AAAAAATTTCGTGTTTTAAAA
6937975 AAAAATATTTCCGTGTTTTAAAA
1 AAAAA-ATTT-CGTGTTTTAAAA
6937998 A
1 A
6937999 TTTTTCGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 9 0.22
22 19 0.46
23 13 0.32
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (21 bp):
AAAAAATTTCGTGTTTTAAAA
Found at i:6937976 original size:17 final size:17
Alignment explanation
Indices: 6937779--6938227 Score: 97
Period size: 18 Copynumber: 25.0 Consensus size: 17
6937769 TTTCAAAAGT
*
6937779 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
6937797 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
6937814 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* * *
6937832 TTGTCGTTTTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
6937850 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
6937868 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
6937886 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
6937903 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
6937920 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
6937938 TTTCTTGTTTTCAAAAAAAAAA
1 TTTCGTGTTTT-----AAAAAA
6937960 TTTCGTGTTTTAAAAAAAAATA
1 TTTCGTGTTTT----AAAAA-A
*
6937982 TTTCCGTGTTTTAAAAATT
1 TTT-CGTGTTTTAAAAA-A
6938001 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
*
6938017 TTCTCGT-ATTT---AAA
1 TT-TCGTGTTTTAAAAAA
* *
6938031 TTT-TTTTTTTAAGAAAAAA
1 TTTCGTGTTTT---AAAAAA
*
6938050 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
6938066 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
6938082 TTCCCGTGTTTCAAAAAAAAA
1 TT-TCGTGTTT---TAAAAAA
*
6938103 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* *
6938121 TTTCGTTTTTTTCCAAAAAT
1 TTTCG-TGTTTT--AAAAAA
*
6938141 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
6938159 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
6938173 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
6938191 TTCTCGTATTTTAAAAAAAA
1 TT-TCGTGTTTT--AAAAAA
6938211 CTTTCGT-TTTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
6938228 AGAAATACTG
Statistics
Matches: 327, Mismatches: 55, Indels: 98
0.68 0.11 0.20
Matches are distributed among these distances:
12 1 0.00
13 4 0.01
14 8 0.02
15 2 0.01
16 35 0.11
17 65 0.20
18 99 0.30
19 41 0.13
20 26 0.08
21 19 0.06
22 19 0.06
23 8 0.02
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:6946650 original size:72 final size:72
Alignment explanation
Indices: 6946444--6947465 Score: 1708
Period size: 72 Copynumber: 14.1 Consensus size: 72
6946434 TAAGCCTTTT
* * ** * *
6946444 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6946508 GTAATTTT
65 GTAATTTC
* * * *
6946516 AATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
6946581 GGTAATTTC
64 GGTAATTTC
* *
6946590 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6946655 TATTTTC
66 TAATTTC
6946662 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6946727 GTAATTTC
65 GTAATTTC
6946735 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6946800 TAATTTC
66 TAATTTC
6946807 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6946872 TATTTTC
66 TAATTTC
6946879 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6946944 GTAATTTC
65 GTAATTTC
6946952 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6947017 TATTTTC
66 TAATTTC
*
6947024 AATTTTTGTTCTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTT-TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6947088 GTAATTTC
65 GTAATTTC
6947096 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6947161 TAATTTC
66 TAATTTC
6947168 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6947233 TATTTTC
66 TAATTTC
*
6947240 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6947305 GTAATTTC
65 GTAATTTC
* *
6947313 AATTTCTTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6947378 TATTTTC
66 TAATTTC
* * *
6947385 AATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGCTGA
1 AATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
6947449 GGTATTTTC
64 GGTAATTTC
6947458 AATTTCTG
1 AATTTCTG
6947466 CTTTACTAAT
Statistics
Matches: 910, Mismatches: 30, Indels: 19
0.95 0.03 0.02
Matches are distributed among these distances:
71 4 0.00
72 562 0.62
73 282 0.31
74 62 0.07
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:6946839 original size:217 final size:217
Alignment explanation
Indices: 6946440--6947465 Score: 1722
Period size: 217 Copynumber: 4.7 Consensus size: 217
6946430 GAGTTAAGCC
* * * ** *
6946440 TTTT-AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * * *
6946503 CTGAGGTAATTTTAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
66 TTGAGGTAATTTCAATTTCTGTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* * *
6946568 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGT
129 CAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGT
* *
6946633 TGAGCCTCAGGACACGCTGAGGTA
194 TGAGCCTCAAGACACGTTGAGGTA
6946657 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
6946722 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
6946787 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
131 AGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
6946852 AGCCTCAAGACACGTTGAGGTA
196 AGCCTCAAGACACGTTGAGGTA
6946874 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
6946939 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
6947004 AGACACGTTGAGGTATTTTCAATTTTTGTTCTT-AAAATTCAACTCATATTGCGAGAAATGAGTT
131 AGACACGTTGAGGTATTTTCAATTTCTGTT-TTCAAAATTCAACTCATATTGCGAGAAATGAGTT
6947068 GAGCCTCAAGACACGTTGAGGTA
195 GAGCCTCAAGACACGTTGAGGTA
*
6947091 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
6947155 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
*
6947220 AGACACGTTGAGGTATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTT
131 AGACACGTTGAGGTATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
6947285 GAGCCTCAAGACACGTTGAGGTA
195 GAGCCTCAAGACACGTTGAGGTA
* * *
6947308 ATTTCAATTTCT-TTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* *
6947372 TTGAGGTATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCT
66 TTGAGGTAATTTCAATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* *
6947436 CAAGGCACGCTGAGGTATTTTCAATTTCTG
129 CAAGACACGTTGAGGTATTTTCAATTTCTG
6947466 CTTTACTAAT
Statistics
Matches: 777, Mismatches: 24, Indels: 15
0.95 0.03 0.02
Matches are distributed among these distances:
216 144 0.19
217 487 0.63
218 86 0.11
219 60 0.08
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (217 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
AGCCTCAAGACACGTTGAGGTA
Found at i:6947477 original size:145 final size:144
Alignment explanation
Indices: 6946444--6947465 Score: 1701
Period size: 145 Copynumber: 7.1 Consensus size: 144
6946434 TAAGCCTTTT
* * ** * *
6946444 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* * *
6946508 GTAATTTT-AATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
65 GT-ATTTTCAATTTCTGTT-TT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
*
6946572 ACACGCTGAGGTAATTTC
127 ACACGTTGAGGTAATTTC
* *
6946590 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6946655 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6946720 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
6946735 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6946800 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 TATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
6946865 GTTGAGGTATTTTC
131 GTTGAGGTAATTTC
6946879 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6946944 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
6947009 CGTTGAGGTATTTTC
130 CGTTGAGGTAATTTC
*
6947024 AATTTTTGTTCTT-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTT-TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6947088 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6947153 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
6947168 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6947233 TATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6947298 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
* *
6947313 AATTTCTTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
6947378 TATTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGC
66 TATTTTCAATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
6947442 ACGCTGAGGTATTTTC
129 ACGTTGAGGTAATTTC
6947458 AATTTCTG
1 AATTTCTG
6947466 CTTTACTAAT
Statistics
Matches: 843, Mismatches: 25, Indels: 17
0.95 0.03 0.02
Matches are distributed among these distances:
143 2 0.00
144 278 0.33
145 497 0.59
146 64 0.08
147 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (144 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTC
Found at i:6947571 original size:14 final size:14
Alignment explanation
Indices: 6947549--6947581 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
6947539 TCTTTTCAAA
6947549 TTCTG-TTTTTAAT
1 TTCTGTTTTTTAAT
6947562 TTCTGTTTTTTAAT
1 TTCTGTTTTTTAAT
6947576 TTCTGT
1 TTCTGT
6947582 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.70
Consensus pattern (14 bp):
TTCTGTTTTTTAAT
Found at i:6947571 original size:86 final size:87
Alignment explanation
Indices: 6947380--6947571 Score: 214
Period size: 86 Copynumber: 2.2 Consensus size: 87
6947370 CATTGAGGTA
* * * *
6947380 TTTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACG
1 TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
*
6947445 CTGAGGTATTTTCAATTTCTGC
66 CTGAGGTATTTTCAAATTCTGC
* * * *
6947467 TTTACTAA-TTCTACTTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCC
1 TTT-TTAATTTCT-GTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG--
*
6947528 ACACGCTGAGGTCTTTTCAAATTCTG-
62 -CACGCTGAGGTATTTTCAAATTCTGC
6947554 TTTTTAATTTCTGTTTTT
1 TTTTTAATTTCTGTTTTT
6947572 TAATTTCTGT
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
85 3 0.03
86 37 0.43
87 17 0.20
88 30 0.34
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
CTGAGGTATTTTCAAATTCTGC
Found at i:6947671 original size:53 final size:54
Alignment explanation
Indices: 6947592--6947841 Score: 359
Period size: 53 Copynumber: 4.7 Consensus size: 54
6947582 GTTTCAAAAA
* * *
6947592 AAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
6947646 AAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
* *
6947699 AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCC--TT--TTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
* * *
6947749 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTTGCAAATTCT-GTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AATTTCTATTTTTC
*
6947804 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
6947842 GGCTCACGTG
Statistics
Matches: 177, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
50 45 0.25
52 4 0.02
53 49 0.28
54 34 0.19
55 41 0.23
56 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
Found at i:6948104 original size:16 final size:16
Alignment explanation
Indices: 6948083--6948119 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
6948073 TTTAATTTTC
6948083 AAAATTTCAAAAAAA-A
1 AAAATTT-AAAAAAATA
6948099 AAAA-TTAAAAAAATA
1 AAAATTTAAAAAAATA
6948114 AAAATT
1 AAAATT
6948120 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.37
15 7 0.37
16 5 0.26
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATTTAAAAAAATA
Found at i:6948155 original size:30 final size:29
Alignment explanation
Indices: 6948115--6948230 Score: 117
Period size: 30 Copynumber: 3.9 Consensus size: 29
6948105 AAAAAAATAA
* *
6948115 AAATTGCATTTTGACACCTAAACTTTTC-CT
1 AAATTTCATTTTGAC-CCTAAAC-TTTCATT
*
6948145 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCATT
* *
6948175 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAACTTTCATT
* * *
6948205 AAATTTCATTTTAATCCTAAATTTTC
1 AAATTTCATTTTGACCCTAAACTTTC
6948231 TAAAAATTAC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
29 16 0.22
30 54 0.74
31 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCATT
Found at i:6948496 original size:10 final size:10
Alignment explanation
Indices: 6948477--6948519 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
6948467 TTTTTCGAAG
*
6948477 GAAAAAAGAA
1 GAAAAGAGAA
6948487 GAAAAGAGAA
1 GAAAAGAGAA
6948497 GAAAAGAGAA
1 GAAAAGAGAA
* *
6948507 -AGAGGAGAA
1 GAAAAGAGAA
6948516 GAAA
1 GAAA
6948520 GAAAGAGTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 7 0.25
10 21 0.75
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:6948510 original size:16 final size:17
Alignment explanation
Indices: 6948482--6948526 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
6948472 CGAAGGAAAA
6948482 AAGAAGA-AAAGAGAAG
1 AAGAAGAGAAAGAGAAG
*
6948498 AA-AAGAGAAAGAGGAG
1 AAGAAGAGAAAGAGAAG
6948514 AAGAA-AGAAAGAG
1 AAGAAGAGAAAGAG
6948527 TACCGGCGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 4 0.15
16 20 0.77
17 2 0.08
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
AAGAAGAGAAAGAGAAG
Found at i:6948514 original size:19 final size:18
Alignment explanation
Indices: 6948480--6948519 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
6948470 TTCGAAGGAA
6948480 AAAAGAAGAAAAGAGAAG
1 AAAAGAAGAAAAGAGAAG
6948498 AAAAG-AGAAAGAGGAGAAG
1 AAAAGAAGAAA-A-GAGAAG
6948517 AAA
1 AAA
6948520 GAAAGAGTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 6 0.30
19 9 0.45
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (18 bp):
AAAAGAAGAAAAGAGAAG
Found at i:6948587 original size:3 final size:3
Alignment explanation
Indices: 6948581--6948626 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
6948571 GCTAGACTTT
*
6948581 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
6948627 AGAAAGAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:6948599 original size:10 final size:10
Alignment explanation
Indices: 6948584--6948612 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
6948574 AGACTTTGAA
6948584 GAAGAAGAAG
1 GAAGAAGAAG
6948594 GAAGAAGAAG
1 GAAGAAGAAG
6948604 GAAGAAGAA
1 GAAGAAGAA
6948613 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:6948599 original size:13 final size:13
Alignment explanation
Indices: 6948581--6948626 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
6948571 GCTAGACTTT
6948581 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
6948594 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
6948607 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
6948618 GAAGAAGAA
1 GAAGAAGAA
6948627 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:6948638 original size:24 final size:24
Alignment explanation
Indices: 6948581--6948639 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
6948571 GCTAGACTTT
*
6948581 GAAGAAGAAGAAGGAAGAAGAAGGAA
1 GAAGAA-AAG-AGGAAGAAGAAGAAA
6948607 GAAGAAAAGAGGAAGAAGAAAGAAA
1 GAAGAAAAGAGGAAGAAG-AAGAAA
*
6948632 GAAAAAAA
1 GAAGAAAA
6948640 AAGAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 15 0.50
26 6 0.20
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
GAAGAAAAGAGGAAGAAGAAGAAA
Found at i:6948740 original size:18 final size:18
Alignment explanation
Indices: 6948717--6948782 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 18
6948707 CCAGCAGCCC
6948717 AAGAAAAAACAAAAAAAA
1 AAGAAAAAACAAAAAAAA
*
6948735 AAGAAACAAGCCCAAAAAAAA
1 AAGAAA-AA--ACAAAAAAAA
** *
6948756 AA-TCAAAGCAAAAAAAA
1 AAGAAAAAACAAAAAAAA
6948773 AAGCAAAAAA
1 AAG-AAAAAA
6948783 AAGAAGGGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
17 11 0.31
18 6 0.17
19 7 0.19
20 1 0.03
21 11 0.31
ACGTcount: A:0.79, C:0.12, G:0.08, T:0.02
Consensus pattern (18 bp):
AAGAAAAAACAAAAAAAA
Found at i:6948767 original size:17 final size:17
Alignment explanation
Indices: 6948747--6948779 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6948737 GAAACAAGCC
*
6948747 CAAAAAAAAAATCAAAG
1 CAAAAAAAAAAGCAAAG
6948764 CAAAAAAAAAAGCAAA
1 CAAAAAAAAAAGCAAA
6948780 AAAAAGAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.12, G:0.06, T:0.03
Consensus pattern (17 bp):
CAAAAAAAAAAGCAAAG
Found at i:6948780 original size:11 final size:12
Alignment explanation
Indices: 6948760--6948784 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6948750 AAAAAAAATC
6948760 AAAGCAAAAAAA
1 AAAGCAAAAAAA
6948772 AAAGCAAAAAAA
1 AAAGCAAAAAAA
6948784 A
1 A
6948785 GAAGGGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGCAAAAAAA
Found at i:6948934 original size:15 final size:13
Alignment explanation
Indices: 6948914--6948990 Score: 66
Period size: 15 Copynumber: 5.5 Consensus size: 13
6948904 GCAGCCCAGC
6948914 AGAAAAAAAAAAGGA
1 AGAAAAAAAAAA--A
6948929 AGAAAAAGAAGAAAA
1 AGAAAAA-AA-AAAA
6948944 AGAAAAAGAAAAAA
1 AGAAAAA-AAAAAA
*
6948958 GGAAAAAAGAAAAA
1 AGAAAAAA-AAAAA
* *
6948972 A-AGAAAAAAAGA
1 AGAAAAAAAAAAA
6948984 AGAAAAA
1 AGAAAAA
6948991 GGGGGTTCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
12 5 0.09
13 10 0.19
14 15 0.28
15 18 0.34
16 2 0.04
17 3 0.06
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAAAAA
Found at i:6948937 original size:6 final size:6
Alignment explanation
Indices: 6948937--6948991 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
6948927 GAAGAAAAAG
* * *
6948937 AAGAAA AAGAAA AAGAAAA AAGGAA AA-AAG AA-AAA AAGAAA AA-AAG
1 AAGAAA AAGAAA AAG-AAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
6948983 AAGAAA AAG
1 AAGAAA AAG
6948992 GGGGTTCAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 11 0.28
6 23 0.57
7 6 0.15
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:6948939 original size:9 final size:9
Alignment explanation
Indices: 6948921--6948991 Score: 74
Period size: 9 Copynumber: 7.7 Consensus size: 9
6948911 AGCAGAAAAA
6948921 AAAAAGGAAG
1 AAAAA-GAAG
6948931 AAAAAGAAG
1 AAAAAGAAG
*
6948940 AAAAAGAAA
1 AAAAAGAAG
*
6948949 AAGAAAAAAGG
1 AA-AAAGAA-G
6948960 AAAAAAGAA-
1 -AAAAAGAAG
6948969 AAAAAGAA-
1 AAAAAGAAG
6948977 AAAAAGAAG
1 AAAAAGAAG
6948986 AAAAAG
1 AAAAAG
6948992 GGGGTTCAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
8 16 0.30
9 20 0.38
10 10 0.19
11 5 0.09
12 2 0.04
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
AAAAAGAAG
Found at i:6948950 original size:30 final size:27
Alignment explanation
Indices: 6948914--6948990 Score: 93
Period size: 30 Copynumber: 2.7 Consensus size: 27
6948904 GCAGCCCAGC
6948914 AGAAAAAAAAAAGGAAGAAAAAGAAGAAAA
1 AGAAAAAAAAAAGG-A-AAAAAGAA-AAAA
6948944 AGAAAAAGAAAAAAGGAAAAAAGAAAAAA
1 AG-AAAA-AAAAAAGGAAAAAAGAAAAAA
*
6948973 AGAAAAAAAGAA-GAAAAA
1 AGAAAAAAAAAAGGAAAAA
6948991 GGGGGTTCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
26 6 0.14
27 5 0.11
28 4 0.09
29 6 0.14
30 10 0.23
31 5 0.11
32 8 0.18
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (27 bp):
AGAAAAAAAAAAGGAAAAAAGAAAAAA
Found at i:6948957 original size:8 final size:8
Alignment explanation
Indices: 6948919--6948991 Score: 80
Period size: 8 Copynumber: 9.0 Consensus size: 8
6948909 CCAGCAGAAA
6948919 AAAAAAAGG
1 AAAAAAA-G
6948928 AAGAAAAAG
1 AA-AAAAAG
6948937 AAGAAAAAG
1 AA-AAAAAG
6948946 --AAAAAG
1 AAAAAAAG
6948952 -AAAAAAG
1 AAAAAAAG
*
6948959 GAAAAAAG
1 AAAAAAAG
6948967 AAAAAAAG
1 AAAAAAAG
6948975 AAAAAAAG
1 AAAAAAAG
6948983 AAGAAAAAG
1 AA-AAAAAG
6948992 GGGGTTCAAT
Statistics
Matches: 59, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
6 6 0.10
7 6 0.10
8 24 0.41
9 18 0.31
10 5 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:6949556 original size:18 final size:19
Alignment explanation
Indices: 6949531--6949586 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
6949521 GAAATTTTCG
**
6949531 AATTTTCGCGTTT-TCAAA
1 AATTTTCGCGTTTGAAAAA
* *
6949549 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTGAAAAA
6949568 AATTTTCGCGTTT-AAAAA
1 AATTTTCGCGTTTGAAAAA
6949586 A
1 A
6949587 TTTCTCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTTTCGCGTTTGAAAAA
Found at i:6949573 original size:19 final size:18
Alignment explanation
Indices: 6949531--6949982 Score: 71
Period size: 17 Copynumber: 25.1 Consensus size: 18
6949521 GAAATTTTCG
* **
6949531 AATTTTCGCGTTTTCAAA
1 AATTTTCGTGTTTAAAAA
*
6949549 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGTGTTT-AAAAA
*
6949568 AATTTTCGCGTTT-AAAA
1 AATTTTCGTGTTTAAAAA
* *
6949585 AATTTCTCGTATTT-CAAA
1 AATTT-TCGTGTTTAAAAA
* * ** *
6949603 AATTGTCGTTTTTTTATA
1 AATTTTCGTGTTTAAAAA
* * *
6949621 AATCTTCGTGCTTT-CAAT
1 AATTTTCGTG-TTTAAAAA
** *
6949639 AATCCTCGTGCTTT-TAAA
1 AATTTTCGTG-TTTAAAAA
* * *
6949657 AATTCTCATGTTT-CAAA
1 AATTTTCGTGTTTAAAAA
* **
6949674 AATCTTCGTGTTT-TCAA
1 AATTTTCGTGTTTAAAAA
* * *
6949691 AATTCTAGTGTTT-CAAA
1 AATTTTCGTGTTTAAAAA
*
6949708 AATTTTCTTGTTTTCAAAAAAA
1 AATTTTCGTG-TTT---AAAAA
*
6949730 AAATTTCGTGTTTTAAAAAAA
1 AATTTTCGTG-TTT--AAAAA
*
6949751 AATATTTCCGTGTTTTAAAA
1 AAT-TTT-CGTGTTTAAAAA
* *
6949771 ATTTTTCGTGTTT-TAAA
1 AATTTTCGTGTTTAAAAA
* *
6949788 AATTCTCGTATTT---AA
1 AATTTTCGTGTTTAAAAA
* *
6949803 AATTTT-TTTTTTAAGAAAA
1 AATTTTCGTGTTT-A-AAAA
*
6949822 AATTTT-GT-TTCAAAAA
1 AATTTTCGTGTTTAAAAA
* * *
6949838 AA-TGTCTTGTTT-TAAA
1 AATTTTCGTGTTTAAAAA
**
6949854 AATTCCCGTGTTTCAAAAA
1 AATTTTCGTGTTT-AAAAA
* * *
6949873 AAATGTCGTGTTTTAAGAA
1 AATTTTCGTG-TTTAAAAA
* **
6949892 AA-TTTCGTTTTTTTCCAAA
1 AATTTTCG--TGTTTAAAAA
**
6949911 AATTTTCGTGTTT-CTAA
1 AATTTTCGTGTTTAAAAA
* *
6949928 AATATTCGTGTTT--ACA
1 AATTTTCGTGTTTAAAAA
* **
6949944 AATTCTCGTGTTTTCAAA
1 AATTTTCGTGTTTAAAAA
* *
6949962 AATTCTCGTATTTTAAAAA
1 AATTTTCGT-GTTTAAAAA
6949981 AA
1 AA
6949983 AAAACTTTCG
Statistics
Matches: 325, Mismatches: 81, Indels: 55
0.70 0.18 0.12
Matches are distributed among these distances:
14 4 0.01
15 9 0.03
16 24 0.07
17 91 0.28
18 88 0.27
19 60 0.18
20 15 0.05
21 9 0.03
22 21 0.06
23 4 0.01
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTTTCGTGTTTAAAAA
Found at i:6949604 original size:37 final size:37
Alignment explanation
Indices: 6949531--6949604 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
6949521 GAAATTTTCG
* * * *
6949531 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
6949568 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
6949605 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:6949703 original size:34 final size:34
Alignment explanation
Indices: 6949632--6949726 Score: 120
Period size: 34 Copynumber: 2.8 Consensus size: 34
6949622 ATCTTCGTGC
* * *
6949632 TTTCAATAATCCTCGTGCTTTTAAAAATTCTCATG
1 TTTCAAAAATCTTCGTG-TTTTCAAAATTCTCATG
6949667 TTTCAAAAATCTTCGTGTTTTCAAAATTCT-AGTG
1 TTTCAAAAATCTTCGTGTTTTCAAAATTCTCA-TG
* *
6949701 TTTCAAAAATTTTCTTGTTTTCAAAA
1 TTTCAAAAATCTTCGTGTTTTCAAAA
6949727 AAAAAATTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
33 1 0.02
34 38 0.70
35 15 0.28
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (34 bp):
TTTCAAAAATCTTCGTGTTTTCAAAATTCTCATG
Found at i:6949706 original size:16 final size:16
Alignment explanation
Indices: 6949655--6949708 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
6949645 CGTGCTTTTA
6949655 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
6949671 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
6949689 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
6949705 AAAA
1 AAAA
6949709 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:6949732 original size:23 final size:22
Alignment explanation
Indices: 6949705--6949771 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 22
6949695 CTAGTGTTTC
*
6949705 AAAAATTTTCTTGTTTTCAAAAA
1 AAAAATTTTCGTGTTTT-AAAAA
6949728 AAAAA-TTTCGTGTTTTAAAAA
1 AAAAATTTTCGTGTTTTAAAAA
*
6949749 AAAATATTTCCGTGTTTTAAAAA
1 AAAA-ATTTTCGTGTTTTAAAAA
6949772 TTTTTCGTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.22
22 11 0.28
23 20 0.50
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
AAAAATTTTCGTGTTTTAAAAA
Found at i:6949736 original size:22 final size:21
Alignment explanation
Indices: 6949705--6949771 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 21
6949695 CTAGTGTTTC
* *
6949705 AAAAATTTTCTTGTTTTCAAAA
1 AAAAAATTTCGTGTTTT-AAAA
6949727 AAAAAATTTCGTGTTTTAAAA
1 AAAAAATTTCGTGTTTTAAAA
6949748 AAAAATATTTCCGTGTTTTAAAA
1 AAAAA-ATTT-CGTGTTTTAAAA
6949771 A
1 A
6949772 TTTTTCGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 9 0.22
22 19 0.46
23 13 0.32
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (21 bp):
AAAAAATTTCGTGTTTTAAAA
Found at i:6949749 original size:17 final size:17
Alignment explanation
Indices: 6949552--6949981 Score: 109
Period size: 18 Copynumber: 24.0 Consensus size: 17
6949542 TTTCAAAAGT
*
6949552 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
6949570 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
6949587 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* * *
6949605 TTGTCGTTTTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
6949623 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
6949641 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
6949659 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
6949676 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
6949693 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
6949711 TTTCTTGTTTTCAAAAAAAAAA
1 TTTCGTGTTTT-----AAAAAA
6949733 TTTCGTGTTTTAAAAAAAAATA
1 TTTCGTGTTTT----AAAAA-A
*
6949755 TTTCCGTGTTTTAAAAATT
1 TTT-CGTGTTTTAAAAA-A
6949774 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
*
6949790 TTCTCGT-ATTT--AAAA
1 TT-TCGTGTTTTAAAAAA
* *
6949805 TTT-TTTTTTTAAGAAAAAA
1 TTTCGTGTTTT---AAAAAA
*
6949824 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
6949840 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
6949856 TTCCCGTGTTTCAAAAAAAA
1 TT-TCGTGTTT--TAAAAAA
*
6949876 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* *
6949894 TTTCGTTTTTTTCCAAAAAT
1 TTTCG-TGTTTT--AAAAAA
*
6949914 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
6949932 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
6949946 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
6949964 TTCTCGTATTTTAAAAAA
1 TT-TCGTGTTTTAAAAAA
6949982 AAAAACTTTC
Statistics
Matches: 313, Mismatches: 55, Indels: 87
0.69 0.12 0.19
Matches are distributed among these distances:
13 1 0.00
14 7 0.02
15 8 0.03
16 35 0.11
17 59 0.19
18 104 0.33
19 45 0.14
20 16 0.05
21 11 0.04
22 19 0.06
23 8 0.03
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:6959086 original size:98 final size:98
Alignment explanation
Indices: 6958914--6959108 Score: 363
Period size: 98 Copynumber: 2.0 Consensus size: 98
6958904 ACAATAAAAT
*
6958914 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
6958979 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
6959012 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
6959077 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
6959109 TTGTTTTTAG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:6960280 original size:19 final size:19
Alignment explanation
Indices: 6960256--6960347 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
6960246 AATCATATAT
6960256 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
6960275 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
6960294 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
6960313 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6960332 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
6960348 CTCAAAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6960303 original size:38 final size:38
Alignment explanation
Indices: 6960233--6960347 Score: 158
Period size: 38 Copynumber: 2.9 Consensus size: 38
6960223 AAATTAAATC
*
6960233 TCTAAGATTACAAAATCATATATTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATC--ATA-TCTAAGATTGCATATCATA
*
6960275 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
* *
6960313 TCTAGGATTGCATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
6960348 CTCAAAAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
38 51 0.75
39 3 0.04
41 4 0.06
42 10 0.15
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:6962310 original size:25 final size:25
Alignment explanation
Indices: 6962281--6962360 Score: 63
Period size: 28 Copynumber: 3.0 Consensus size: 25
6962271 ACATTAGTAA
*
6962281 TTAATTAATTTT-TTTTTATAAATTT
1 TTAATCAATTTTATTTTTA-AAATTT
*
6962306 TTAATCATTTTTATTTTTAAAATAAATT
1 TTAATCAATTTTATTTTTAAAAT---TT
* *
6962334 TTTATCATTTTTATCATTTTAAAATTT
1 TTAATCAATTTTAT--TTTTAAAATTT
6962361 ATAAAATTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
25 14 0.30
26 6 0.13
27 2 0.04
28 15 0.33
30 9 0.20
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (25 bp):
TTAATCAATTTTATTTTTAAAATTT
Found at i:6962335 original size:28 final size:30
Alignment explanation
Indices: 6962298--6962358 Score: 99
Period size: 28 Copynumber: 2.1 Consensus size: 30
6962288 ATTTTTTTTT
6962298 ATAAATTTTTAATCATTTTTAT-TTTTAAA
1 ATAAATTTTTAATCATTTTTATATTTTAAA
6962327 ATAAATTTTT-ATCATTTTTATCATTTTAAA
1 ATAAATTTTTAATCATTTTTAT-ATTTTAAA
6962357 AT
1 AT
6962359 TTATAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 11 0.37
29 10 0.33
30 9 0.30
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (30 bp):
ATAAATTTTTAATCATTTTTATATTTTAAA
Found at i:6962366 original size:39 final size:39
Alignment explanation
Indices: 6962293--6962367 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
6962283 AATTAATTTT
* *
6962293 TTTTTATAAATTTTTAATCATTTTTATTTTTAAAATAAA
1 TTTTTATAAATTTTTAATCATTTTAATTTATAAAATAAA
*
6962332 TTTTTAT-CATTTTT-ATCATTTTAAAATTTATAAAAT
1 TTTTTATAAATTTTTAATCATTTT--AATTTATAAAAT
6962368 TTTAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 8 0.26
38 6 0.19
39 17 0.55
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (39 bp):
TTTTTATAAATTTTTAATCATTTTAATTTATAAAATAAA
Found at i:6964030 original size:21 final size:20
Alignment explanation
Indices: 6963992--6964059 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 20
6963982 AAAACCCTTG
*
6963992 AAATTTA-AATATTGTTTTTGA
1 AAATTTATAA-ATTATTTTT-A
6964013 AAATTTATAAATTATTTTTA
1 AAATTTATAAATTATTTTTA
* * *
6964033 AACTTTTTAAAATATTTTTA
1 AAATTTATAAATTATTTTTA
6964053 TAAATTT
1 -AAATTT
6964060 TACATTTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 18 0.45
21 20 0.50
22 2 0.05
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (20 bp):
AAATTTATAAATTATTTTTA
Found at i:6964051 original size:20 final size:20
Alignment explanation
Indices: 6964006--6964059 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
6963996 TTAAATATTG
*
6964006 TTTTTGAAAATTTATAAATTA
1 TTTTT-AAAATTTATAAAATA
* *
6964027 TTTTTAAACTTTTTAAAATA
1 TTTTTAAAATTTATAAAATA
6964047 TTTTTATAAATTT
1 TTTTTA-AAATTT
6964060 TACATTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTTTAAAATTTATAAAATA
Found at i:6967298 original size:13 final size:13
Alignment explanation
Indices: 6967282--6967310 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
6967272 AAAGCTAAAA
6967282 TTAAAACTTGTAT
1 TTAAAACTTGTAT
6967295 TT-AAACTTGTAT
1 TTAAAACTTGTAT
6967307 TTAA
1 TTAA
6967311 TCATTTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.80
13 3 0.20
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TTAAAACTTGTAT
Found at i:6967302 original size:12 final size:12
Alignment explanation
Indices: 6967285--6967310 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6967275 GCTAAAATTA
6967285 AAACTTGTATTT
1 AAACTTGTATTT
6967297 AAACTTGTATTT
1 AAACTTGTATTT
6967309 AA
1 AA
6967311 TCATTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (12 bp):
AAACTTGTATTT
Found at i:6981481 original size:51 final size:51
Alignment explanation
Indices: 6981384--6981481 Score: 115
Period size: 51 Copynumber: 1.9 Consensus size: 51
6981374 ACGATATATG
* ** * ** **
6981384 GCGTAAGACCATAGATGAAAGATGTTATGGTAGTTTGATATGAGGTACGTA
1 GCGTAAGACCATAGATGAAAGACGCCATGGCAGCATGATACAAGGTACGTA
*
6981435 GCGTAAGACCATGGATGAAAGACGCCATGGCAGCATGATACAAGGTA
1 GCGTAAGACCATAGATGAAAGACGCCATGGCAGCATGATACAAGGTA
6981482 AATGTATATA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.22
Consensus pattern (51 bp):
GCGTAAGACCATAGATGAAAGACGCCATGGCAGCATGATACAAGGTACGTA
Found at i:6981672 original size:33 final size:33
Alignment explanation
Indices: 6981646--6981723 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
6981636 TAGTCTGCTG
*
6981646 GGACAGTAAACACATAACATAGATAGTCTACCA
1 GGACAATAAACACATAACATAGATAGTCTACCA
* * *
6981679 GGACAATATACACATAACATATATAATCTACCA
1 GGACAATAAACACATAACATAGATAGTCTACCA
6981712 GGACAATAAACA
1 GGACAATAAACA
6981724 TGAGTTAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (33 bp):
GGACAATAAACACATAACATAGATAGTCTACCA
Found at i:6984104 original size:13 final size:13
Alignment explanation
Indices: 6983965--6984149 Score: 97
Period size: 13 Copynumber: 13.7 Consensus size: 13
6983955 ATATTTTGTG
6983965 TAAACATTTCATA
1 TAAACATTTCATA
* *
6983978 TAATCGTTTCATA
1 TAAACATTTCATA
*
6983991 T-ATCTATTTCCATATA
1 TAAAC-ATTT-C--ATA
*
6984007 TAAACGTTTCATA
1 TAAACATTTCATA
* *
6984020 TAATCGTTTCATA
1 TAAACATTTCATA
*
6984033 T-ATCTATTTCCATA
1 TAAAC-ATTT-CATA
*
6984047 TAAACATTTTATA
1 TAAACATTTCATA
* *
6984060 TAATCGTTTCATA
1 TAAACATTTCATA
*
6984073 T-ATCTATTTCCATATA
1 TAAAC-ATTT-C--ATA
6984089 TAAACATTTCATA
1 TAAACATTTCATA
* *
6984102 TAACCATTTCATC
1 TAAACATTTCATA
*
6984115 TAAACATTTCATT
1 TAAACATTTCATA
* * *
6984128 TTACCATTTCATT
1 TAAACATTTCATA
*
6984141 TACACATTT
1 TAAACATTT
6984150 AACACATAAT
Statistics
Matches: 136, Mismatches: 23, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
12 9 0.07
13 93 0.68
14 11 0.08
15 4 0.03
16 15 0.11
17 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.02, T:0.45
Consensus pattern (13 bp):
TAAACATTTCATA
Found at i:6984124 original size:42 final size:42
Alignment explanation
Indices: 6983965--6984113 Score: 248
Period size: 42 Copynumber: 3.6 Consensus size: 42
6983955 ATATTTTGTG
6983965 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
1 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
*
6984007 TAAACGTTTCATATAATCGTTTCATATATCTATTTCC--ATA
1 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
*
6984047 TAAACATTTTATATAATCGTTTCATATATCTATTTCCATATA
1 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
* *
6984089 TAAACATTTCATATAACCATTTCAT
1 TAAACATTTCATATAATCGTTTCAT
6984114 CTAAACATTT
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
40 38 0.38
42 61 0.62
ACGTcount: A:0.36, C:0.17, G:0.03, T:0.45
Consensus pattern (42 bp):
TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
Found at i:6988671 original size:21 final size:22
Alignment explanation
Indices: 6988624--6988668 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
6988614 CATTATGGAG
**
6988624 TTAAATTTTTATTTTTTATTTT
1 TTAAATTTTTATTTCATATTTT
6988646 TTAAATTTTTATTTCATATTTT
1 TTAAATTTTTATTTCATATTTT
6988668 T
1 T
6988669 AAAAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
TTAAATTTTTATTTCATATTTT
Found at i:6992476 original size:7 final size:6
Alignment explanation
Indices: 6992426--6992455 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
6992416 GAGGATATTC
6992426 TTTTTA CTTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTT
6992456 TAAATTAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:6992647 original size:10 final size:10
Alignment explanation
Indices: 6992634--6992667 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
6992624 TAAAAAGTTT
6992634 AAAAATTAAA
1 AAAAATTAAA
6992644 AAAAATT-AA
1 AAAAATTAAA
*
6992653 TAAAATTAAA
1 AAAAATTAAA
6992663 AAAAA
1 AAAAA
6992668 GTTTAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAAATTAAA
Found at i:6992647 original size:19 final size:19
Alignment explanation
Indices: 6992625--6992673 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
6992615 TTTAATTATT
6992625 AAAAAGTTTAAAAATTAAA
1 AAAAAGTTTAAAAATTAAA
*
6992644 AAAAA-TTAATAAAATTAAA
1 AAAAAGTTTA-AAAATTAAA
6992663 AAAAAGTTTAA
1 AAAAAGTTTAA
6992674 TAAAGTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 3 0.12
19 20 0.77
20 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (19 bp):
AAAAAGTTTAAAAATTAAA
Found at i:6994359 original size:28 final size:28
Alignment explanation
Indices: 6994327--6994382 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
6994317 ACAAAATTGA
* *
6994327 ATAGTT-GAGTGACTATTTTATAATTTTC
1 ATAGTTAGA-TGACCATTTTATAACTTTC
*
6994355 ATAGTTAGATGACCATTTTGTAACTTTC
1 ATAGTTAGATGACCATTTTATAACTTTC
6994383 CATAATTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (28 bp):
ATAGTTAGATGACCATTTTATAACTTTC
Found at i:7003673 original size:31 final size:31
Alignment explanation
Indices: 7003638--7003704 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
7003628 TGTACTCATA
7003638 TCTGCTTGATTATTTGTGTTTAACATAATTC
1 TCTGCTTGATTATTTGTGTTTAACATAATTC
7003669 TCTGCTTGATTATTTGTGTTTAACATAATTC
1 TCTGCTTGATTATTTGTGTTTAACATAATTC
7003700 TCTGC
1 TCTGC
7003705 CATCTACTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (31 bp):
TCTGCTTGATTATTTGTGTTTAACATAATTC
Found at i:7007593 original size:22 final size:21
Alignment explanation
Indices: 7007553--7007608 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
7007543 TTTCTATTAT
7007553 AATT-TATTTCAAATATATAAC
1 AATTATATTT-AAATATATAAC
* *
7007574 ATTATATATTTAAATTTATAAC
1 AAT-TATATTTAAATATATAAC
7007596 AATTATATTTAAA
1 AATTATATTTAAA
7007609 AAATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 12 0.40
22 13 0.43
23 5 0.17
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
AATTATATTTAAATATATAAC
Found at i:7007600 original size:23 final size:23
Alignment explanation
Indices: 7007557--7007603 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
7007547 TATTATAATT
7007557 TATTTCAAATATATAACATTATA
1 TATTTCAAATATATAACATTATA
*
7007580 TATTT-AAATTTATAACAATTATA
1 TATTTCAAATATATAAC-ATTATA
7007603 T
1 T
7007604 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTTCAAATATATAACATTATA
Found at i:7007616 original size:11 final size:11
Alignment explanation
Indices: 7007600--7007625 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7007590 TATAACAATT
7007600 ATATTTAAAAA
1 ATATTTAAAAA
7007611 ATATTTAAAAA
1 ATATTTAAAAA
7007622 ATAT
1 ATAT
7007626 AAATTATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATATTTAAAAA
Found at i:7012929 original size:503 final size:503
Alignment explanation
Indices: 7011982--7012993 Score: 2024
Period size: 503 Copynumber: 2.0 Consensus size: 503
7011972 GTCCTTTGCT
7011982 AAAGAATGCTATAGGCTTCCATTTTTGCTACAACACTGCTCCTAAACCCTGGCCACAAGCATTTG
1 AAAGAATGCTATAGGCTTCCATTTTTGCTACAACACTGCTCCTAAACCCTGGCCACAAGCATTTG
7012047 TGTCAATACAAAATCCTCTTTAAAGTCTAGAAGGGATAGGACTGATGCTCGACAGATTTCTTGTT
66 TGTCAATACAAAATCCTCTTTAAAGTCTAGAAGGGATAGGACTGATGCTCGACAGATTTCTTGTT
7012112 TAAGTCTCTTAAAAGCTATGTTAGTAGCTTTAGTCCAAGTCCAAAGAATATCCTTCTTAAGTAAA
131 TAAGTCTCTTAAAAGCTATGTTAGTAGCTTTAGTCCAAGTCCAAAGAATATCCTTCTTAAGTAAA
7012177 TCTATCAGTGGTCGAGAAAATATGCCGTAATACCTTATAAATCTCCTGTAGTAGCCTAACAATCC
196 TCTATCAGTGGTCGAGAAAATATGCCGTAATACCTTATAAATCTCCTGTAGTAGCCTAACAATCC
7012242 AAAGAACCCTCTTAATTCCTTCATTGACTTGAGAGTAGGCCAGCTTAAGACTCCCTCCACATTGG
261 AAAGAACCCTCTTAATTCCTTCATTGACTTGAGAGTAGGCCAGCTTAAGACTCCCTCCACATTGG
7012307 TTACATTCATGGTTATTGAACCTTCAGAGATAATATGTTCTAGATATTCAATCTGATGAGTGCCA
326 TTACATTCATGGTTATTGAACCTTCAGAGATAATATGTTCTAGATATTCAATCTGATGAGTGCCA
7012372 AATGTCCACTTGCTTTGCTTAACAAAGAGATGATTATCCCTCAAGAGCTATAGTACTTCTTTTAA
391 AATGTCCACTTGCTTTGCTTAACAAAGAGATGATTATCCCTCAAGAGCTATAGTACTTCTTTTAA
7012437 ATGGACCAAATAATCAGACCAACTATTGAAATAAACTAATATGTCATC
456 ATGGACCAAATAATCAGACCAACTATTGAAATAAACTAATATGTCATC
7012485 AAAGAATGCTATAGGCTTCCATTTTTGCTACAACACTGCTCCTAAACCCTGGCCACAAGCATTTG
1 AAAGAATGCTATAGGCTTCCATTTTTGCTACAACACTGCTCCTAAACCCTGGCCACAAGCATTTG
7012550 TGTCAATACAAAATCCTCTTTAAAGTCTAGAAGGGATAGGACTGATGCTCGACAGATTTCTTGTT
66 TGTCAATACAAAATCCTCTTTAAAGTCTAGAAGGGATAGGACTGATGCTCGACAGATTTCTTGTT
7012615 TAAGTCTCTTAAAAGCTATGTTAGTAGCTTTAGTCCAAGTCCAAAGAATATCCTTCTTAAGTAAA
131 TAAGTCTCTTAAAAGCTATGTTAGTAGCTTTAGTCCAAGTCCAAAGAATATCCTTCTTAAGTAAA
7012680 TCTATCAGTGGTCGAGAAAATATGCCGTAATACCTTATAAATCTCCTGTAGTAGCCTAACAATCC
196 TCTATCAGTGGTCGAGAAAATATGCCGTAATACCTTATAAATCTCCTGTAGTAGCCTAACAATCC
7012745 AAAGAACCCTCTTAATTCCTTCATTGACTTGAGAGTAGGCCAGCTTAAGACTCCCTCCACATTGG
261 AAAGAACCCTCTTAATTCCTTCATTGACTTGAGAGTAGGCCAGCTTAAGACTCCCTCCACATTGG
7012810 TTACATTCATGGTTATTGAACCTTCAGAGATAATATGTTCTAGATATTCAATCTGATGAGTGCCA
326 TTACATTCATGGTTATTGAACCTTCAGAGATAATATGTTCTAGATATTCAATCTGATGAGTGCCA
7012875 AATGTCCACTTGCTTTGCTTAACAAAGAGATGATTATCCCTCAAGAGCTATAGTACTTCTTTTAA
391 AATGTCCACTTGCTTTGCTTAACAAAGAGATGATTATCCCTCAAGAGCTATAGTACTTCTTTTAA
7012940 ATGGACCAAATAATCAGACCAACTATTGAAATAAACTAATATGTCATC
456 ATGGACCAAATAATCAGACCAACTATTGAAATAAACTAATATGTCATC
7012988 AAAGAA
1 AAAGAA
7012994 CACTAATACT
Statistics
Matches: 509, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
503 509 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (503 bp):
AAAGAATGCTATAGGCTTCCATTTTTGCTACAACACTGCTCCTAAACCCTGGCCACAAGCATTTG
TGTCAATACAAAATCCTCTTTAAAGTCTAGAAGGGATAGGACTGATGCTCGACAGATTTCTTGTT
TAAGTCTCTTAAAAGCTATGTTAGTAGCTTTAGTCCAAGTCCAAAGAATATCCTTCTTAAGTAAA
TCTATCAGTGGTCGAGAAAATATGCCGTAATACCTTATAAATCTCCTGTAGTAGCCTAACAATCC
AAAGAACCCTCTTAATTCCTTCATTGACTTGAGAGTAGGCCAGCTTAAGACTCCCTCCACATTGG
TTACATTCATGGTTATTGAACCTTCAGAGATAATATGTTCTAGATATTCAATCTGATGAGTGCCA
AATGTCCACTTGCTTTGCTTAACAAAGAGATGATTATCCCTCAAGAGCTATAGTACTTCTTTTAA
ATGGACCAAATAATCAGACCAACTATTGAAATAAACTAATATGTCATC
Found at i:7021140 original size:15 final size:15
Alignment explanation
Indices: 7021116--7021145 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7021106 ATGTTATAGC
7021116 ATATAAATTTGAAAA
1 ATATAAATTTGAAAA
*
7021131 ATATAGATTTGAAAA
1 ATATAAATTTGAAAA
7021146 CTTTTTCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (15 bp):
ATATAAATTTGAAAA
Found at i:7021544 original size:69 final size:73
Alignment explanation
Indices: 7021419--7021558 Score: 216
Period size: 69 Copynumber: 2.0 Consensus size: 73
7021409 AGTTGACTCG
* * *
7021419 AAAAATTTGAATAACTCAAAATTTGATTTTTTTTAATATTTTTTTCAAATCGAATCGTATTTTAC
1 AAAAATTTAAATAACTCAAAATTCGATTTTTTTTAATATTTTTTTCAAATCAAATCGTATTTTAC
7021484 TCACCCTT
66 TCACCCTT
*
7021492 AAAAA-TTAAATAACTTAAAATTCGA-TTTTTTT-AT-TTTTTTTCAAATCAAATCGTATTTTAC
1 AAAAATTTAAATAACTCAAAATTCGATTTTTTTTAATATTTTTTTCAAATCAAATCGTATTTTAC
7021553 TCACCC
66 TCACCC
7021559 CTACAAAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
69 32 0.51
70 2 0.03
71 7 0.11
72 17 0.27
73 5 0.08
ACGTcount: A:0.36, C:0.14, G:0.04, T:0.46
Consensus pattern (73 bp):
AAAAATTTAAATAACTCAAAATTCGATTTTTTTTAATATTTTTTTCAAATCAAATCGTATTTTAC
TCACCCTT
Found at i:7025342 original size:12 final size:12
Alignment explanation
Indices: 7025325--7025377 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
7025315 TAAATGTACC
*
7025325 TTCTTCATTTTG
1 TTCTTCTTTTTG
*
7025337 TTCTTCTTTTTT
1 TTCTTCTTTTTG
*
7025349 TTATTCTTTTTG
1 TTCTTCTTTTTG
* *
7025361 TTCTTGTTCTTG
1 TTCTTCTTTTTG
7025373 TTCTT
1 TTCTT
7025378 GTTCGTATCT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.04, C:0.15, G:0.08, T:0.74
Consensus pattern (12 bp):
TTCTTCTTTTTG
Found at i:7027732 original size:20 final size:20
Alignment explanation
Indices: 7027694--7027732 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7027684 AAAAGCAGTT
*
7027694 CACCGGGAAAGCCCATTGAC
1 CACCGGGAAAACCCATTGAC
*
7027714 CACCGGGAAAACCCTTTGA
1 CACCGGGAAAACCCATTGA
7027733 TCATCATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (20 bp):
CACCGGGAAAACCCATTGAC
Found at i:7037617 original size:17 final size:17
Alignment explanation
Indices: 7037590--7037632 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7037580 ACTTTTAATT
7037590 ATTTAAAAAATCAAAAA-A
1 ATTT-AAAAAT-AAAAATA
*
7037608 ATTTAAAAATAAAAATT
1 ATTTAAAAATAAAAATA
7037625 ATTTAAAA
1 ATTTAAAA
7037633 GGTATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 14 0.61
18 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
ATTTAAAAATAAAAATA
Found at i:7037632 original size:26 final size:26
Alignment explanation
Indices: 7037603--7037654 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7037593 TAAAAAATCA
*
7037603 AAAAAATTTAAAAATA-AAAATTATTT
1 AAAAAATATAAAAATATAAAA-TATTT
**
7037629 AAAAGGTATAAAAATATAAAATATTT
1 AAAAAATATAAAAATATAAAATATTT
7037655 TTTTAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (26 bp):
AAAAAATATAAAAATATAAAATATTT
Found at i:7038460 original size:18 final size:18
Alignment explanation
Indices: 7038439--7038473 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7038429 TTTGGGTTTT
7038439 TTAAATAATTT-AATTGAA
1 TTAAA-AATTTGAATTGAA
7038457 TTAAAAATTTGAATTGA
1 TTAAAAATTTGAATTGA
7038474 GTTTAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TTAAAAATTTGAATTGAA
Found at i:7042636 original size:23 final size:23
Alignment explanation
Indices: 7042610--7042653 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
7042600 TTATTTTTTG
*
7042610 AATTCT-TTGAAATTTAATTTTAA
1 AATTCTATTCAAA-TTAATTTTAA
*
7042633 AATTTTATTCAAATTAATTTT
1 AATTCTATTCAAATTAATTTT
7042654 TAGGACCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (23 bp):
AATTCTATTCAAATTAATTTTAA
Found at i:7045444 original size:17 final size:17
Alignment explanation
Indices: 7045407--7045454 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
7045397 TGCTAGCCTT
7045407 TCAATGTTGTTC-CAACA
1 TCAA-GTTGTTCTCAACA
7045424 --AAGTTGTTCTCAACA
1 TCAAGTTGTTCTCAACA
*
7045439 TCAAGTTGTTTTCAAC
1 TCAAGTTGTTCTCAAC
7045455 GGGATTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.26
15 7 0.26
17 13 0.48
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (17 bp):
TCAAGTTGTTCTCAACA
Found at i:7060878 original size:17 final size:17
Alignment explanation
Indices: 7060858--7060916 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
7060848 TTAGCATGAT
*
7060858 TAAACAATTCAATAATA
1 TAAATAATTCAATAATA
* *
7060875 TAAATAATACAA-AATT
1 TAAATAATTCAATAATA
7060891 TGAAATTTAATTCAATAATA
1 T-AAA--TAATTCAATAATA
7060911 TAAATA
1 TAAATA
7060917 GTAGACATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.12
17 15 0.45
19 10 0.30
20 4 0.12
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.34
Consensus pattern (17 bp):
TAAATAATTCAATAATA
Found at i:7060915 original size:19 final size:18
Alignment explanation
Indices: 7060863--7060915 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
7060853 ATGATTAAAC
7060863 AATTCAATAATATAAA-T
1 AATTCAATAATATAAATT
* *
7060880 AATACAA-AATTTGAAATTT
1 AATTCAATAATAT-AAA-TT
7060899 AATTCAATAATATAAAT
1 AATTCAATAATATAAAT
7060916 AGTAGACATA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
18 1 0.04
19 10 0.36
20 4 0.14
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.36
Consensus pattern (18 bp):
AATTCAATAATATAAATT
Found at i:7061051 original size:18 final size:19
Alignment explanation
Indices: 7061004--7061052 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
7060994 GTTTTGGGGG
*
7061004 TTTGGGAGGAAGTAAAATTT
1 TTTGGG-GGAAGTAAAATGT
7061024 TTTAGGGGGAAGTAAAA-GT
1 TTT-GGGGGAAGTAAAATGT
7061043 TTTGGGGGAA
1 TTTGGGGGAA
7061053 AATAAAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 7 0.26
19 4 0.15
20 13 0.48
21 3 0.11
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.31
Consensus pattern (19 bp):
TTTGGGGGAAGTAAAATGT
Found at i:7061076 original size:75 final size:71
Alignment explanation
Indices: 7060953--7061112 Score: 205
Period size: 75 Copynumber: 2.2 Consensus size: 71
7060943 TTGGGGTTGG
* * *
7060953 GGGGGAAGTAAAAGTTTTTGGAAGAAAATAGAAGGAAAAACGTTTTGGGGGTTTGGGAGGAAGTA
1 GGGGGAAGTAAAAGTTTTTGGAAGAAAATAAAAAGAAAAACATTTT-GGGGTTTGGG-GGAAGTA
7061018 AAATTTTTT
64 AAA-TTTTT
** *
7061027 AGGGGGAAGTAAAAG-TTTTGGGGGAAAATAAAAAAGAAAAATATTTTGGGGTTTGGGGGAAGTA
1 -GGGGGAAGTAAAAGTTTTTGGAAGAAAAT-AAAAAGAAAAACATTTTGGGGTTTGGGGGAAGTA
7061091 AAATTTTT
64 AAATTTTT
*
7061099 GGGGAAAGTAAAAG
1 GGGGGAAGTAAAAG
7061113 GGTTTTTTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
71 13 0.17
72 5 0.06
73 10 0.13
74 22 0.29
75 27 0.35
ACGTcount: A:0.39, C:0.01, G:0.34, T:0.26
Consensus pattern (71 bp):
GGGGGAAGTAAAAGTTTTTGGAAGAAAATAAAAAGAAAAACATTTTGGGGTTTGGGGGAAGTAAA
ATTTTT
Found at i:7063621 original size:25 final size:25
Alignment explanation
Indices: 7063593--7063671 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
7063583 TGCTTTCACA
7063593 AGCTATGAATCGGTAAGCTCATACG
1 AGCTATGAATCGGTAAGCTCATACG
7063618 AGCTATGAATCGGTAAGCTC-TCACG
1 AGCTATGAATCGGTAAGCTCAT-ACG
** *
7063643 AGCTACAAATCAGTAAGCTCATACG
1 AGCTATGAATCGGTAAGCTCATACG
7063668 AGCT
1 AGCT
7063672 GTGGTGTGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
24 1 0.02
25 47 0.96
26 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (25 bp):
AGCTATGAATCGGTAAGCTCATACG
Found at i:7063647 original size:50 final size:50
Alignment explanation
Indices: 7063561--7063671 Score: 141
Period size: 50 Copynumber: 2.2 Consensus size: 50
7063551 ACATGTATGG
* * * ** *
7063561 TCATTCGAGCTATAAATCGATATGCTTTCACAAGCTATGAATCGGTAAGC
1 TCATACGAGCTATAAATCGATAAGCTCTCACAAGCTACAAATCAGTAAGC
* * *
7063611 TCATACGAGCTATGAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGC
1 TCATACGAGCTATAAATCGATAAGCTCTCACAAGCTACAAATCAGTAAGC
7063661 TCATACGAGCT
1 TCATACGAGCT
7063672 GTGGTGTGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (50 bp):
TCATACGAGCTATAAATCGATAAGCTCTCACAAGCTACAAATCAGTAAGC
Found at i:7065320 original size:22 final size:22
Alignment explanation
Indices: 7065292--7065336 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7065282 GGTATGAAAA
7065292 GATAGTTGATTGAAGGATTGAT
1 GATAGTTGATTGAAGGATTGAT
7065314 GATAGTTGATTGAAGGATTGAT
1 GATAGTTGATTGAAGGATTGAT
7065336 G
1 G
7065337 TTGTTGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (22 bp):
GATAGTTGATTGAAGGATTGAT
Found at i:7068224 original size:23 final size:22
Alignment explanation
Indices: 7068198--7068241 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
7068188 CATGCTCGGT
*
7068198 TTAGTTCTAGAACCGACTAAATC
1 TTAGCTCTAGAACC-ACTAAATC
* *
7068221 TTAGCTCTGGTACCACTAAAT
1 TTAGCTCTAGAACCACTAAAT
7068242 GTAATACCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (22 bp):
TTAGCTCTAGAACCACTAAATC
Done.