Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 25 of 216
Found at i:7260148 original size:21 final size:20
Alignment explanation
Indices: 7260115--7260170 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
7260105 TTTTTATTTA
7260115 AAATTTAATTATAAAATATAT
1 AAATTTAATTATAAAAT-TAT
7260136 AAATATTAA-TATAAAATTAT
1 AAAT-TTAATTATAAAATTAT
*
7260156 -ACTTTATATTATAAA
1 AAATTTA-ATTATAAA
7260171 CAAAAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.10
19 3 0.10
20 9 0.29
21 12 0.39
22 4 0.13
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATTTAATTATAAAATTAT
Found at i:7261636 original size:5 final size:6
Alignment explanation
Indices: 7261623--7261717 Score: 55
Period size: 6 Copynumber: 15.0 Consensus size: 6
7261613 ATAATTTAAT
* * * * *
7261623 AAATAA AAATAA AATTCTAA AACTAA AAATAA AACTAA AACTAA AATTAA
1 AAATAA AAATAA AA--ATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* * * * *
7261673 AACTAA AACTAA AACTAA AACTAA AGTATAA AAGTATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA A-AATAA AA--ATAA AAATAA
7261718 TTTAATTATG
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
6 61 0.80
7 4 0.05
8 11 0.14
ACGTcount: A:0.68, C:0.08, G:0.02, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:7261648 original size:6 final size:6
Alignment explanation
Indices: 7261639--7261697 Score: 100
Period size: 6 Copynumber: 9.8 Consensus size: 6
7261629 AAATAAAATT
* *
7261639 CTAAAA CTAAAA ATAAAA CTAAAA CTAAAA TTAAAA CTAAAA CTAAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA
7261687 CTAAAA CTAAA
1 CTAAAA CTAAA
7261698 GTATAAAAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.68, C:0.14, G:0.00, T:0.19
Consensus pattern (6 bp):
CTAAAA
Found at i:7261660 original size:18 final size:18
Alignment explanation
Indices: 7261626--7261697 Score: 108
Period size: 18 Copynumber: 3.9 Consensus size: 18
7261616 ATTTAATAAA
7261626 TAAAAATAAAATTCTAAAAC
1 TAAAAATAAAA--CTAAAAC
7261646 TAAAAATAAAACTAAAAC
1 TAAAAATAAAACTAAAAC
*
7261664 TAAAATTAAAACTAAAAC
1 TAAAAATAAAACTAAAAC
*
7261682 TAAAACTAAAACTAAA
1 TAAAAATAAAACTAAA
7261698 GTATAAAAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 39 0.78
20 11 0.22
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAAATAAAACTAAAAC
Found at i:7261751 original size:9 final size:9
Alignment explanation
Indices: 7261737--7261776 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
7261727 GTAGTGATTC
*
7261737 AATTCGGAT
1 AATTCGGGT
7261746 AATTCGGGT
1 AATTCGGGT
7261755 AATTCGGGT
1 AATTCGGGT
7261764 AATTCGGGT
1 AATTCGGGT
7261773 AATT
1 AATT
7261777 TTTAACCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.35
Consensus pattern (9 bp):
AATTCGGGT
Found at i:7262418 original size:28 final size:28
Alignment explanation
Indices: 7262377--7262432 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
7262367 CTTTGGCGTT
7262377 ATCTTGACTAGATGCTTCATTTCCTTCA
1 ATCTTGACTAGATGCTTCATTTCCTTCA
*
7262405 ATCTTGACTTGATGCTTCATTTCCTTCA
1 ATCTTGACTAGATGCTTCATTTCCTTCA
7262433 TTAATAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.20, C:0.25, G:0.11, T:0.45
Consensus pattern (28 bp):
ATCTTGACTAGATGCTTCATTTCCTTCA
Found at i:7267985 original size:14 final size:15
Alignment explanation
Indices: 7267961--7268014 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 15
7267951 CCCCTAAAAC
7267961 TTTTACTCCCTCACA
1 TTTTACTCCCTCACA
* *
7267976 TTTT-CTCCCTAAAA
1 TTTTACTCCCTCACA
7267990 CTTTTACTCCCTCACA
1 -TTTTACTCCCTCACA
7268006 TTTT-CTCCC
1 TTTTACTCCC
7268015 CAAAATCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 13 0.39
15 12 0.36
16 8 0.24
ACGTcount: A:0.19, C:0.39, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTTACTCCCTCACA
Found at i:7267988 original size:30 final size:30
Alignment explanation
Indices: 7267948--7268019 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
7267938 ATCTCTTTAC
7267948 TTTC-CCCTAAAACTTTTACTCCCTCACAT
1 TTTCTCCCTAAAACTTTTACTCCCTCACAT
7267977 TTTCTCCCTAAAACTTTTACTCCCTCACAT
1 TTTCTCCCTAAAACTTTTACTCCCTCACAT
*
7268007 TTTCTCCCCAAAA
1 TTTCTCCCTAAAA
7268020 TCTCACCCCT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 4 0.10
30 37 0.90
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (30 bp):
TTTCTCCCTAAAACTTTTACTCCCTCACAT
Found at i:7268001 original size:16 final size:16
Alignment explanation
Indices: 7267952--7268001 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
7267942 CTTTACTTTC
7267952 CCCTAAAACTTTTACT
1 CCCTAAAACTTTTACT
* *
7267968 CCCTCACA-TTTT-CT
1 CCCTAAAACTTTTACT
7267982 CCCTAAAACTTTTACT
1 CCCTAAAACTTTTACT
7267998 CCCT
1 CCCT
7268002 CACATTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 8 0.29
15 8 0.29
16 12 0.43
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (16 bp):
CCCTAAAACTTTTACT
Found at i:7268056 original size:23 final size:22
Alignment explanation
Indices: 7268008--7268056 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
7267998 CCCTCACATT
*
7268008 TTCTCCCCAAAATCTCACCCCT
1 TTCTCCCCAAAATCTCACCCCA
*
7268030 TTCTGCCCCAAACTCATC-CCCCA
1 TTCT-CCCCAAAATC-TCACCCCA
7268053 TTCT
1 TTCT
7268057 TTTTTGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 4 0.17
23 17 0.74
24 2 0.09
ACGTcount: A:0.20, C:0.49, G:0.02, T:0.29
Consensus pattern (22 bp):
TTCTCCCCAAAATCTCACCCCA
Found at i:7273809 original size:33 final size:33
Alignment explanation
Indices: 7273740--7274049 Score: 191
Period size: 33 Copynumber: 8.7 Consensus size: 33
7273730 ATATAAAGGG
*
7273740 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
7273767 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * * *
7273800 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
7273842 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * * *
7273875 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
*
7273917 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
7273950 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGAATC----AT-TG---GT
*
7273992 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
7274025 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
7274050 TAACGGACAA
Statistics
Matches: 223, Mismatches: 26, Indels: 61
0.72 0.08 0.20
Matches are distributed among these distances:
27 22 0.10
31 2 0.01
32 2 0.01
33 83 0.37
34 13 0.06
35 2 0.01
36 4 0.02
37 7 0.03
38 8 0.04
39 4 0.02
40 2 0.01
41 10 0.04
42 64 0.29
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:7273854 original size:75 final size:75
Alignment explanation
Indices: 7273765--7274046 Score: 501
Period size: 75 Copynumber: 3.8 Consensus size: 75
7273755 ATTCCCCCAA
7273765 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
7273830 AAATGTGAAG
66 AAATGTGAAG
7273840 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
7273905 AAATGTGAAG
66 AAATGTGAAG
* * * *
7273915 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
*
7273980 AAATGTGAAA
66 AAATGTGAAG
* *
7273990 GGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCAC
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCAC
7274047 CGATAACGGA
Statistics
Matches: 198, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 198 1.00
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (75 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
AAATGTGAAG
Found at i:7273859 original size:42 final size:41
Alignment explanation
Indices: 7273800--7274011 Score: 195
Period size: 42 Copynumber: 5.5 Consensus size: 41
7273790 AATCATTGGT
*
7273800 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTA-TTTAAATGTGAAGGG
* * *
7273842 GGTTGCTAAGTGCTGATTCC-CCG-A-AT-CAT-T---GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
*
7273875 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTA-TTTAAATGTGAAGGG
* * *
7273917 GGTTGCTAAGTGCTGATTCC-CCG-A-CT-CAT-T---GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
* *
7273950 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTAT-TTAAATGTGAAGGG
7273992 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
7274012 CCGAATCACT
Statistics
Matches: 134, Mismatches: 18, Indels: 36
0.71 0.10 0.19
Matches are distributed among these distances:
33 43 0.32
34 5 0.04
35 2 0.01
36 2 0.01
37 6 0.04
38 6 0.04
39 2 0.01
40 2 0.01
41 4 0.03
42 62 0.46
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.33
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
Found at i:7276139 original size:19 final size:19
Alignment explanation
Indices: 7276115--7276152 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7276105 GAAGTTAATT
7276115 ACAAATTTAATTAGGGTGG
1 ACAAATTTAATTAGGGTGG
* *
7276134 ACAAATTTGATTATGGTGG
1 ACAAATTTAATTAGGGTGG
7276153 GTGACAGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.34
Consensus pattern (19 bp):
ACAAATTTAATTAGGGTGG
Found at i:7278272 original size:10 final size:10
Alignment explanation
Indices: 7278249--7278289 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
7278239 AAGTTACAAT
7278249 TTTTTTATAA
1 TTTTTTATAA
7278259 -TTTTTATAA
1 TTTTTTATAA
*
7278268 TTTTTTACAA
1 TTTTTTATAA
*
7278278 TTTTTTGTAA
1 TTTTTTATAA
7278288 TT
1 TT
7278290 ATTAATTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:7281927 original size:40 final size:40
Alignment explanation
Indices: 7281851--7281961 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 40
7281841 GTGGTTTTAG
**
7281851 TCTGCTCCACTACAACTTCAGGGAGCA-AAGACTTGATGCGA
1 TCTGCTCCACTACTGCTT-AGGGAG-ATAAGACTTGATGCGA
* *
7281892 TCTGATCCACTACTGCTTAGGGAGATAAGAGTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
7281932 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
7281962 TCAGTAATCT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.02
40 48 0.75
41 15 0.23
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:7282150 original size:45 final size:44
Alignment explanation
Indices: 7282090--7282417 Score: 276
Period size: 45 Copynumber: 7.3 Consensus size: 44
7282080 TTAAGGAGAT
* * * *
7282090 AAGATCTGTAATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGA
1 AAGATCTGT-ATCTTCGATCTGCTCCGCTGTCAGTACAGGAAGGC
*
7282135 AAGATCTGCTATCTTC-AGTCTGCTCCGCTGTCAGTATAGGAAGGC
1 AAGATCTG-TATCTTCGA-TCTGCTCCGCTGTCAGTACAGGAAGGC
* *
7282180 AAGA-CTAGTTTCTTCGATCTGCTTCG-TCGTCAGTACAGGAAGGC
1 AAGATCT-GTATCTTCGATCTGCTCCGCT-GTCAGTACAGGAAGGC
* * *
7282224 AAAATCTGTTATCTT-TAGTCTGCTCCGCTATCAGTACAGGAAGGC
1 AAGATCTG-TATCTTCGA-TCTGCTCCGCTGTCAGTACAGGAAGGC
* * *
7282269 AAGA-CTGGT-TCCTTCGATCTGCTTCGCCGTCAGTATAGGAAGGC
1 AAGATCT-GTAT-CTTCGATCTGCTCCGCTGTCAGTACAGGAAGGC
* *
7282313 AAGATCTACTATCTTGCG-TCTGCTCCGCTGTCAGTACATGAAGGC
1 AAGATCT-GTATCTT-CGATCTGCTCCGCTGTCAGTACAGGAAGGC
* * * ** * *
7282358 TAGA-CTGGTTTCTTTGATCTATTTCGCCGTCAGTACAGGAAGGC
1 AAGATCT-GTATCTTCGATCTGCTCCGCTGTCAGTACAGGAAGGC
*
7282402 AAGATCTATTATCTTC
1 AAGATCT-GTATCTTC
7282418 AACCAGCTCT
Statistics
Matches: 226, Mismatches: 40, Indels: 34
0.75 0.13 0.11
Matches are distributed among these distances:
43 3 0.01
44 102 0.45
45 116 0.51
46 5 0.02
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (44 bp):
AAGATCTGTATCTTCGATCTGCTCCGCTGTCAGTACAGGAAGGC
Found at i:7282195 original size:89 final size:89
Alignment explanation
Indices: 7282101--7282418 Score: 415
Period size: 89 Copynumber: 3.6 Consensus size: 89
7282091 AGATCTGTAA
* * * *
7282101 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGAAAGATCTGCTATCTTCAGTCTGCTCCGCTGT
1 TCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGAAAGATCTACTATCTTCAGTCTGCTCCGCTGT
* *
7282166 CAGTATAGGAAGGCAAGACTAGTT
66 CAGTACAGGAAGGCAAGACTGGTT
* ** * *
7282190 TCTTCGATCTGCTTCGTCGTCAGTACAGGAAGGCAAA-ATCTGTTATCTTTAGTCTGCTCCGCTA
1 TCTTCGATCTGCTTCGCCGTCAGTACAGGAAGG-AAAGATCTACTATCTTCAGTCTGCTCCGCTG
7282254 TCAGTACAGGAAGGCAAGACTGGTT
65 TCAGTACAGGAAGGCAAGACTGGTT
* * *
7282279 CCTTCGATCTGCTTCGCCGTCAGTATAGGAAGGCAAGATCTACTATCTTGC-GTCTGCTCCGCTG
1 TCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGAAAGATCTACTATCTT-CAGTCTGCTCCGCTG
* *
7282343 TCAGTACATGAAGGCTAGACTGGTT
65 TCAGTACAGGAAGGCAAGACTGGTT
* ** * *
7282368 TCTTTGATCTATTTCGCCGTCAGTACAGGAAGGCAAGATCTATTATCTTCA
1 TCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGAAAGATCTACTATCTTCA
7282419 ACCAGCTCTG
Statistics
Matches: 200, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
88 3 0.01
89 194 0.97
90 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (89 bp):
TCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGAAAGATCTACTATCTTCAGTCTGCTCCGCTGT
CAGTACAGGAAGGCAAGACTGGTT
Found at i:7282212 original size:44 final size:43
Alignment explanation
Indices: 7282101--7282405 Score: 242
Period size: 44 Copynumber: 6.9 Consensus size: 43
7282091 AGATCTGTAA
* * * *
7282101 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGAAAGATCT-GCTA
1 TCTTCGATCTGCTTCGC-GTCAGTACAGGAAGGCAAGA-CTAG-TT
* *
7282146 TCTTC-AGTCTGCTCCGCTGTCAGTATAGGAAGGCAAGACTAGTT
1 TCTTCGA-TCTGCTTCGC-GTCAGTACAGGAAGGCAAGACTAGTT
*
7282190 TCTTCGATCTGCTTCGTCGTCAGTACAGGAAGGCAAAATCT-GTT
1 TCTTCGATCTGCTTCG-CGTCAGTACAGGAAGGCAAGA-CTAGTT
* * * *
7282234 ATCTT-TAGTCTGCTCCGCTATCAGTACAGGAAGGCAAGACTGGTT
1 -TCTTCGA-TCTGCTTCGC-GTCAGTACAGGAAGGCAAGACTAGTT
* * * *
7282279 CCTTCGATCTGCTTCGCCGTCAGTATAGGAAGGCAAGATCTACTA
1 TCTTCGATCTGCTTCG-CGTCAGTACAGGAAGGCAAGA-CTAGTT
* * * *
7282324 TCTTGCG-TCTGCTCCGCTGTCAGTACATGAAGGCTAGACTGGTT
1 TCTT-CGATCTGCTTCGC-GTCAGTACAGGAAGGCAAGACTAGTT
* **
7282368 TCTTTGATCTATTTCGCCGTCAGTACAGGAAGGCAAGA
1 TCTTCGATCTGCTTCG-CGTCAGTACAGGAAGGCAAGA
7282406 TCTATTATCT
Statistics
Matches: 209, Mismatches: 35, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.00
44 103 0.49
45 103 0.49
46 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (43 bp):
TCTTCGATCTGCTTCGCGTCAGTACAGGAAGGCAAGACTAGTT
Found at i:7282487 original size:88 final size:88
Alignment explanation
Indices: 7282368--7283113 Score: 1177
Period size: 88 Copynumber: 8.5 Consensus size: 88
7282358 TAGACTGGTT
** * * * * *
7282368 TCTTTGATCTATTTCGCCGTCAGTACAGGAAGGCAAGATCTATTATCTTCAACCAGCTCTGCTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
*
7282433 AACCGAGAGAAGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * **
7282456 TCTTTGATCTGCTTCGCTTTCAATGCAGGAAGGTAAGATCTGTTGTATTCAACCAGCTCCACTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
* * *
7282521 AACCGAGTGAGGTAAGGCTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * ** * *
7282544 TCTTCGATCTGCTTCGGTGTCAGGGCAGAAAGGCAAGATCTGTTGTCTTCAAACAGCTCTGCTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
7282609 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
*
7282632 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGTTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
7282697 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* *
7282720 TCTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
*
7282785 AACCGAGAGAGGGAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
*
7282808 TCTTTGATCTACTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
*
7282873 AACCGAGAGAGGTAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* *
7282896 TCTTTGATCTGTTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
7282961 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* *
7282984 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGTAAGATCTGTTGTATTCAACCAGCTCTGCTAC
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
*
7283049 AATCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
**
7283072 TCTTCAATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG
1 TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG
7283114 GTAACTTCAT
Statistics
Matches: 601, Mismatches: 57, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 601 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (88 bp):
TCTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTAC
AACCGAGAGAGGCAAGGTTTGTG
Found at i:7285123 original size:14 final size:13
Alignment explanation
Indices: 7285115--7285152 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
7285105 ATTTTTTTGA
7285115 TTTTTTTTTATTT
1 TTTTTTTTTATTT
7285128 TTTTGTTTTTATTT
1 TTTT-TTTTTATTT
7285142 TTGTTTTTTTA
1 TT-TTTTTTTA
7285153 GTCTAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.17
14 17 0.74
15 2 0.09
ACGTcount: A:0.08, C:0.00, G:0.05, T:0.87
Consensus pattern (13 bp):
TTTTTTTTTATTT
Found at i:7285131 original size:20 final size:20
Alignment explanation
Indices: 7285105--7285151 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
7285095 TTTGACTTTG
7285105 ATTTTTTTGATTTT-TTTTT
1 ATTTTTTTGATTTTATTTTT
*
7285124 ATTTTTTTGTTTTTATTTTT
1 ATTTTTTTGATTTTATTTTT
*
7285144 GTTTTTTT
1 ATTTTTTT
7285152 AGTCTAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.85
Consensus pattern (20 bp):
ATTTTTTTGATTTTATTTTT
Found at i:7285142 original size:12 final size:12
Alignment explanation
Indices: 7285108--7285149 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
7285098 GACTTTGATT
7285108 TTTTTGATTTTT-
1 TTTTT-ATTTTTG
*
7285120 TTTTATTTTTTTG
1 TTTT-TATTTTTG
7285133 TTTTTATTTTTG
1 TTTTTATTTTTG
7285145 TTTTT
1 TTTTT
7285150 TTAGTCTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 21 0.81
13 5 0.19
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (12 bp):
TTTTTATTTTTG
Found at i:7289012 original size:127 final size:126
Alignment explanation
Indices: 7288783--7289022 Score: 283
Period size: 127 Copynumber: 1.9 Consensus size: 126
7288773 TTATTTCAAT
* * *
7288783 TTTAAAAGGATATTCGGTTATTTAGGTCAACGAGAAAAATCGAAGCCCAATAAGTTAGGGCACGA
1 TTTAAAAGGATATTCGGCTATTCAGGTCAACGAGAAAAATCGAAGCCCAATAAGTTAGGACACGA
* *
7288848 TTTCTCGAATTTTCTAAATATAGAATATTACCTTTATTTTTGAAATTTTATACGTTTGGAAA
66 TTTCTCGAATTTCCTAAATATAGAATATTACCTTTA-TTTTAAAATTTTATACGTTTGGAAA
** * * *
7288910 TTTAAAAGGATATTTTGCTATTCAGGTTTAACGAG-AAAATCG-AGACCCAGTAAGTTAGGATAC
1 TTTAAAAGGATATTCGGCTATTCAGG-TCAACGAGAAAAATCGAAG-CCCAATAAGTTAGGACAC
* *
7288973 GA-TTCTTCGAATTTCCTAAA-ATGTGAGATATTGCC-TTATTTTAAAATTTT
64 GATTTC-TCGAATTTCCTAAATAT-AGA-ATATTACCTTTATTTTAAAATTTT
7289023 CTTTTTGAAT
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
126 18 0.19
127 64 0.67
128 14 0.15
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (126 bp):
TTTAAAAGGATATTCGGCTATTCAGGTCAACGAGAAAAATCGAAGCCCAATAAGTTAGGACACGA
TTTCTCGAATTTCCTAAATATAGAATATTACCTTTATTTTAAAATTTTATACGTTTGGAAA
Found at i:7289335 original size:13 final size:13
Alignment explanation
Indices: 7289317--7289365 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
7289307 AATTCAAAGT
7289317 AAATAATAATTTA
1 AAATAATAATTTA
7289330 AAATAAATAATTTA
1 AAAT-AATAATTTA
* * *
7289344 CAACAACAATTTA
1 AAATAATAATTTA
*
7289357 AAAAAATAA
1 AAATAATAA
7289366 ATAATAAAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (13 bp):
AAATAATAATTTA
Found at i:7291190 original size:40 final size:40
Alignment explanation
Indices: 7291138--7291221 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
7291128 TCAGGGAGCA
7291138 AAGACTTGATGCGATCTGATCCACTACTGCTTAGGAAGAT
1 AAGACTTGATGCGATCTGATCCACTACTGCTTAGGAAGAT
* * *
7291178 AAGAGTTGATGCGATCTGCTCCACTACTGCTTAGGGAGAT
1 AAGACTTGATGCGATCTGATCCACTACTGCTTAGGAAGAT
7291218 AAGA
1 AAGA
7291222 TCAGTAATCT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (40 bp):
AAGACTTGATGCGATCTGATCCACTACTGCTTAGGAAGAT
Found at i:7292397 original size:33 final size:33
Alignment explanation
Indices: 7292328--7292637 Score: 191
Period size: 33 Copynumber: 8.7 Consensus size: 33
7292318 ATATAAAGGG
*
7292328 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
7292355 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * * *
7292388 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
7292430 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * * *
7292463 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
*
7292505 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
7292538 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGAATC----AT-TG---GT
*
7292580 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
7292613 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
7292638 TAACGGACAA
Statistics
Matches: 223, Mismatches: 26, Indels: 61
0.72 0.08 0.20
Matches are distributed among these distances:
27 22 0.10
31 2 0.01
32 2 0.01
33 83 0.37
34 13 0.06
35 2 0.01
36 4 0.02
37 7 0.03
38 8 0.04
39 4 0.02
40 2 0.01
41 10 0.04
42 64 0.29
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:7292442 original size:75 final size:75
Alignment explanation
Indices: 7292353--7292634 Score: 501
Period size: 75 Copynumber: 3.8 Consensus size: 75
7292343 ATTCCCCCAA
7292353 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
7292418 AAATGTGAAG
66 AAATGTGAAG
7292428 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
7292493 AAATGTGAAG
66 AAATGTGAAG
* * * *
7292503 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
*
7292568 AAATGTGAAA
66 AAATGTGAAG
* *
7292578 GGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCAC
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCAC
7292635 CGATAACGGA
Statistics
Matches: 198, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 198 1.00
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (75 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACTGTATTTT
AAATGTGAAG
Found at i:7292447 original size:42 final size:41
Alignment explanation
Indices: 7292388--7292599 Score: 195
Period size: 42 Copynumber: 5.5 Consensus size: 41
7292378 AATCATTGGT
*
7292388 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTA-TTTAAATGTGAAGGG
* * *
7292430 GGTTGCTAAGTGCTGATTCC-CCG-A-AT-CAT-T---GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
*
7292463 GGTTGCTAAGTGCTGATTCCACTGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTA-TTTAAATGTGAAGGG
* * *
7292505 GGTTGCTAAGTGCTGATTCC-CCG-A-CT-CAT-T---GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
* *
7292538 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTAT-TTAAATGTGAAGGG
7292580 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
7292600 CCGAATCACT
Statistics
Matches: 134, Mismatches: 18, Indels: 36
0.71 0.10 0.19
Matches are distributed among these distances:
33 43 0.32
34 5 0.04
35 2 0.01
36 2 0.01
37 6 0.04
38 6 0.04
39 2 0.01
40 2 0.01
41 4 0.03
42 62 0.46
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.33
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATTTAAATGTGAAGGG
Found at i:7294725 original size:19 final size:19
Alignment explanation
Indices: 7294701--7294738 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7294691 GAAGTTAATT
7294701 ACAAATTTAATTAGGGTGG
1 ACAAATTTAATTAGGGTGG
* *
7294720 ACAAATTTGATTATGGTGG
1 ACAAATTTAATTAGGGTGG
7294739 GTGACAGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.34
Consensus pattern (19 bp):
ACAAATTTAATTAGGGTGG
Found at i:7296860 original size:10 final size:10
Alignment explanation
Indices: 7296837--7296877 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
7296827 AAGTTACAAT
7296837 TTTTTTATAA
1 TTTTTTATAA
7296847 -TTTTTATAA
1 TTTTTTATAA
*
7296856 TTTTTTACAA
1 TTTTTTATAA
*
7296866 TTTTTTGTAA
1 TTTTTTATAA
7296876 TT
1 TT
7296878 ATTAATTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:7297013 original size:19 final size:20
Alignment explanation
Indices: 7296977--7297014 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7296967 GTTATAAATA
*
7296977 TTTAATTTTTCTAATTTTAG
1 TTTAATTTTTATAATTTTAG
*
7296997 TTTAA-TTTTATATTTTTA
1 TTTAATTTTTATAATTTTA
7297015 ATGTATATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTAATTTTTATAATTTTAG
Found at i:7301721 original size:12 final size:12
Alignment explanation
Indices: 7301706--7301737 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7301696 ATTAGATTAT
7301706 TTATTATTATTG
1 TTATTATTATTG
7301718 TTATTATTATTG
1 TTATTATTATTG
7301730 TT-TTATTA
1 TTATTATTA
7301738 GGCAAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (12 bp):
TTATTATTATTG
Found at i:7302104 original size:9 final size:9
Alignment explanation
Indices: 7302085--7302121 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
7302075 TGAGTTTTCG
7302085 AATTCGAAT
1 AATTCGAAT
7302094 AACTT-GAAT
1 AA-TTCGAAT
7302103 AATTCGAAT
1 AATTCGAAT
7302112 AATTCGAAT
1 AATTCGAAT
7302121 A
1 A
7302122 TTAAACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7303122 original size:13 final size:13
Alignment explanation
Indices: 7303104--7303133 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7303094 GATAAAATGA
*
7303104 GATTCGAAATCTC
1 GATTCGAAAACTC
7303117 GATTCGAAAACTC
1 GATTCGAAAACTC
7303130 GATT
1 GATT
7303134 AACTCGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (13 bp):
GATTCGAAAACTC
Found at i:7303156 original size:5 final size:5
Alignment explanation
Indices: 7303146--7303171 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7303136 CTCGAAAATT
7303146 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
7303172 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:7305994 original size:25 final size:25
Alignment explanation
Indices: 7305966--7306046 Score: 126
Period size: 25 Copynumber: 3.2 Consensus size: 25
7305956 TTTAGTGCGT
7305966 TCTCTGATTATTAGCACGTTGGTGC
1 TCTCTGATTATTAGCACGTTGGTGC
*
7305991 TCTCTGATTATTAGCATGTTGGTGC
1 TCTCTGATTATTAGCACGTTGGTGC
* **
7306016 TCTCTGATTACTAGCACGTCAGTGC
1 TCTCTGATTATTAGCACGTTGGTGC
7306041 TCTCTG
1 TCTCTG
7306047 TTTAGCACAT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (25 bp):
TCTCTGATTATTAGCACGTTGGTGC
Found at i:7306041 original size:50 final size:48
Alignment explanation
Indices: 7305966--7306098 Score: 139
Period size: 50 Copynumber: 2.8 Consensus size: 48
7305956 TTTAGTGCGT
** **
7305966 TCTCTGATTATTAGCACGTTGGTGCTCTCTGATTATTAGCATGTTGGTGC
1 TCTCTGATTA-TAGCACGTCAGTGCTCTCTG-TTATTAGCACATTGGTGC
*
7306016 TCTCTGATTACTAGCACGTCAGTGCTCTCTG-T-TTAGCACATTTGTGC
1 TCTCTGATTA-TAGCACGTCAGTGCTCTCTGTTATTAGCACATTGGTGC
* *
7306063 TCCCTG--TATAGCACTTCAGTGCTCTCTGTTCATTAG
1 TCTCTGATTATAGCACGTCAGTGCTCTCTGTT-ATTAG
7306099 TGCATAACAA
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
44 19 0.26
45 3 0.04
47 21 0.29
48 1 0.01
50 28 0.39
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (48 bp):
TCTCTGATTATAGCACGTCAGTGCTCTCTGTTATTAGCACATTGGTGC
Found at i:7306062 original size:22 final size:22
Alignment explanation
Indices: 7306012--7306092 Score: 83
Period size: 22 Copynumber: 3.5 Consensus size: 22
7306002 TAGCATGTTG
*
7306012 GTGCTCTCTGATTACTAGCACGTCA
1 GTGCTCTCTG-TT--TAGCACTTCA
*
7306037 GTGCTCTCTGTTTAGCACATT-T
1 GTGCTCTCTGTTTAGCAC-TTCA
* *
7306059 GTGCTCCCTGTATAGCACTTCA
1 GTGCTCTCTGTTTAGCACTTCA
7306081 GTGCTCTCTGTT
1 GTGCTCTCTGTT
7306093 CATTAGTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
21 2 0.04
22 32 0.68
23 1 0.02
24 2 0.04
25 10 0.21
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (22 bp):
GTGCTCTCTGTTTAGCACTTCA
Found at i:7315585 original size:44 final size:44
Alignment explanation
Indices: 7315522--7315610 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
7315512 GAAATTGTTT
*
7315522 TTGAGGTTGAAAAAATTCCAACTAAAGCTTAATCTAGTAAAATG
1 TTGAGGTTGAAAAAATTCCAACTAAAGCTTAATCCAGTAAAATG
7315566 TTGAGGTTGAAAAAATTCCAACTAAAGCTTAATCCAGTAAAATG
1 TTGAGGTTGAAAAAATTCCAACTAAAGCTTAATCCAGTAAAATG
7315610 T
1 T
7315611 ACCTTCGGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (44 bp):
TTGAGGTTGAAAAAATTCCAACTAAAGCTTAATCCAGTAAAATG
Found at i:7318775 original size:44 final size:44
Alignment explanation
Indices: 7318712--7319266 Score: 571
Period size: 44 Copynumber: 12.6 Consensus size: 44
7318702 TCGTGGCGAG
* *
7318712 TCTTATCTCAT-TGAAGTTGCAGTGGAGCAGATTAAAGTTATAAA
1 TCTTATCTC-TCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
* * *
7318756 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAACCTACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
* * * *
7318800 TCTTATCT-TCCTGAAGTTGCAATGGAGCAAATTAAAGCCATAAA
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
* * * * * *
7318844 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTCAAGATAGTAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAA
* * *
7318889 TCTTATCTCTCAGAATTTGCAGTAGAGCAGATTAAAGCTACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
* * * * *
7318933 TTTTATCTCCCTG-AGTTGCAGTGAAGCAGATTGAAGATAGCAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAA
* * * *
7318977 TCTTATCTTTCTGAAGTTGTAGTAGAGCAGATTAAAGCTATAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
* * * * *
7319021 TTTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAA
* * * *
7319066 TCTTATCACTCTGAAGTTGTAGTAGAGTAGATTAAAGCTACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
7319110 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
* * * *
7319154 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
* * * * *
7319198 TCTTATTTC-CTTGAAGTTGTAGTGGAGTAGATTGAAA-TTACAAT
1 TCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATT-AAAGCTACAAA
* * * *
7319242 TCCTATATCCCTGAAGTTGTAGTGG
1 TCTTATCTCTCTGAAGTTGCAGTGG
7319267 GTTAGACTAA
Statistics
Matches: 426, Mismatches: 75, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
43 24 0.06
44 306 0.72
45 96 0.23
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (44 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
Found at i:7319232 original size:177 final size:177
Alignment explanation
Indices: 7318723--7319233 Score: 700
Period size: 177 Copynumber: 2.9 Consensus size: 177
7318713 CTTATCTCAT
* * * * *
7318723 TGAAGTTGCAGTGGAGCAGATTAAAGTTATAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 TGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
* * * *
7318788 TAAACCTACAAATCTTATCTTCCTGAAGTTGCAATGGAGCAAATTAAAGCCATAAATCTTATCTC
66 TAAAGCTACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAATCTTATCTC
* * * *
7318853 CCTAAAGTTGTAGTGGAGCAGATTCAAGATAGTAAATCTTATCTCTC
131 CCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTTATCACTC
* * * * *
7318900 AGAATTTGCAGTAGAGCAGATTAAAGCTACAAATTTTATCTCCCTG-AGTTGCAGTGAAGCAGAT
1 TGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
7318964 TGAAGATAGCAAATCTTATCTTTCTGAAGTTGTAGTAGAGCAGATTAAAGCTATAAATTTTATCT
66 TAAAGCTA-CAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAATCTTATCT
7319029 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTTATCACTC
130 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTTATCACTC
* *
7319077 TGAAGTTGTAGTAGAGTAGATTAAAGCTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
1 TGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
7319142 TAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTTATTTC
66 TAAAGCTACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAATCTTATCTC
* *
7319207 CTTGAAGTTGTAGTGGAGTAGATTGAA
131 CCTGAAGTTGTAGTGGAGCAGATTGAA
7319234 ATTACAATTC
Statistics
Matches: 287, Mismatches: 45, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
176 20 0.07
177 244 0.85
178 23 0.08
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (177 bp):
TGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAT
TAAAGCTACAAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAATCTTATCTC
CCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTTATCACTC
Found at i:7320074 original size:13 final size:13
Alignment explanation
Indices: 7320015--7320074 Score: 63
Period size: 13 Copynumber: 4.7 Consensus size: 13
7320005 CCAAGTACTT
7320015 TTTATATTTAAAAA
1 TTTATATTT-AAAA
* *
7320029 GTAATATTTAAAA
1 TTTATATTTAAAA
7320042 TTTATACTTTAAAA
1 TTTATA-TTTAAAA
7320056 ---ATATTTAAAA
1 TTTATATTTAAAA
7320066 TTTATATTT
1 TTTATATTT
7320075 CATATATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
10 7 0.18
11 3 0.08
13 14 0.37
14 14 0.37
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (13 bp):
TTTATATTTAAAA
Found at i:7321881 original size:28 final size:26
Alignment explanation
Indices: 7321850--7321902 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
7321840 TTTAAAAATT
*
7321850 AAAATTTAACCCTATACTTTTATTTTTA
1 AAAATTTAACCC-AT-CTGTTATTTTTA
*
7321878 AAAATTTAATCCATCTGTTATTTTT
1 AAAATTTAACCCATCTGTTATTTTT
7321903 CTTATGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 10 0.43
27 2 0.09
28 11 0.48
ACGTcount: A:0.34, C:0.13, G:0.02, T:0.51
Consensus pattern (26 bp):
AAAATTTAACCCATCTGTTATTTTTA
Found at i:7325932 original size:6 final size:6
Alignment explanation
Indices: 7325921--7325946 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7325911 TATGTCATGC
7325921 TTTCAT TTTCAT TTTCAT TTTCAT TT
1 TTTCAT TTTCAT TTTCAT TTTCAT TT
7325947 GACTCTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTCAT
Found at i:7327711 original size:17 final size:16
Alignment explanation
Indices: 7327674--7327710 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7327664 AAAACCAAGA
7327674 TTTTTACAACATGCAT
1 TTTTTACAACATGCAT
* *
7327690 TTTTTACAATATTCAT
1 TTTTTACAACATGCAT
7327706 TTTTT
1 TTTTT
7327711 TTCATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.14, G:0.03, T:0.57
Consensus pattern (16 bp):
TTTTTACAACATGCAT
Found at i:7331443 original size:44 final size:44
Alignment explanation
Indices: 7331383--7331473 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
7331373 TTAAAAACAC
*
7331383 AAAAATTACAAGAAAAGAGCAAGAATTGAACTCACATGATGCAA
1 AAAAAATACAAGAAAAGAGCAAGAATTGAACTCACATGATGCAA
7331427 AAAAAATACAAGAAAAGAGCAAGAATTGAACTCACATGATGCAA
1 AAAAAATACAAGAAAAGAGCAAGAATTGAACTCACATGATGCAA
7331471 AAA
1 AAA
7331474 TATGAAAAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.57, C:0.13, G:0.15, T:0.14
Consensus pattern (44 bp):
AAAAAATACAAGAAAAGAGCAAGAATTGAACTCACATGATGCAA
Found at i:7346286 original size:18 final size:18
Alignment explanation
Indices: 7346253--7346302 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
7346243 TATTATGCTC
*
7346253 ATTTTGAAAATAATATCAT
1 ATTTT-AAATTAATATCAT
*
7346272 ATTTTAAATTAATATTAT
1 ATTTTAAATTAATATCAT
*
7346290 ATTATTTAATTAA
1 ATT-TTAAATTAA
7346303 ATCCCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 14 0.52
19 13 0.48
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTTTAAATTAATATCAT
Found at i:7346934 original size:61 final size:60
Alignment explanation
Indices: 7346810--7346942 Score: 176
Period size: 61 Copynumber: 2.2 Consensus size: 60
7346800 TTTTCTAAAC
* * ** * *
7346810 TTTTAGAATTAAAACTAAATTGACAAACTTTGTAAATGTTGAGGGCTAAATTTATTGATTT
1 TTTTAGAATTAGAACTAAAATGACAAACTTTGTAAACATTGAGGGCTAAATTTATAGA-AT
* *
7346871 TTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTGAGGGCTAAATTTGTAGAAT
1 TTTTAGAATTAGAACTAAAATGACAAACTTTGTAAACATTGAGGGCTAAATTTATAGAAT
*
7346931 TTTTAGATTTAG
1 TTTTAGAATTAG
7346943 GATCAAATTG
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
60 12 0.19
61 51 0.81
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.40
Consensus pattern (60 bp):
TTTTAGAATTAGAACTAAAATGACAAACTTTGTAAACATTGAGGGCTAAATTTATAGAAT
Found at i:7348994 original size:19 final size:18
Alignment explanation
Indices: 7348960--7349007 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
7348950 TCATTCTTCA
*
7348960 TCTATTTTTTTATATTTT
1 TCTATTTTTATATATTTT
7348978 TCTATTATTTATATATTTT
1 TCTATT-TTTATATATTTT
*
7348997 ATATATTTTTA
1 -TCTATTTTTA
7349008 ATTTCAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 15 0.58
20 5 0.19
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TCTATTTTTATATATTTT
Found at i:7369958 original size:28 final size:27
Alignment explanation
Indices: 7369916--7369969 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
7369906 AAAATTTTCC
7369916 AAAAAAATTCATTTC-CCCTTTGTTTTA
1 AAAAAAATTCATTTCTCCCTTT-TTTTA
*
7369943 AAAAAAATCTCTTTTCTCCCTTTTTTT
1 AAAAAAAT-TCATTTCTCCCTTTTTTT
7369970 CCTCTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 8 0.33
28 10 0.42
29 6 0.25
ACGTcount: A:0.30, C:0.20, G:0.02, T:0.48
Consensus pattern (27 bp):
AAAAAAATTCATTTCTCCCTTTTTTTA
Found at i:7380257 original size:77 final size:77
Alignment explanation
Indices: 7380130--7380276 Score: 188
Period size: 77 Copynumber: 1.9 Consensus size: 77
7380120 TCGCACCGAT
* * ** * *
7380130 TCATGGGTTAATCAATTTTTTACCTCTCACTGAACCGATACCCTAGCTGGTTCTT-ATTCCAACC
1 TCATGGGTCAATCAATTTTCTACCTCTCACCAAACCAATACCCCAGCTGGTTCTTGA-TCCAACC
7380194 AGTCTATATCGGA
65 AGTCTATATCGGA
* * * *
7380207 TCATGGGTCAATCAGTTTTCTCCCTCTCACCAAACTAATACCCCAGCTGGTTCTTGATCCAATCA
1 TCATGGGTCAATCAATTTTCTACCTCTCACCAAACCAATACCCCAGCTGGTTCTTGATCCAACCA
7380272 GTCTA
66 GTCTA
7380277 GTTCAAATTA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 58 0.98
78 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (77 bp):
TCATGGGTCAATCAATTTTCTACCTCTCACCAAACCAATACCCCAGCTGGTTCTTGATCCAACCA
GTCTATATCGGA
Found at i:7381272 original size:30 final size:29
Alignment explanation
Indices: 7381227--7381287 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
7381217 ATTATTTTAT
* * *
7381227 TTCTTAAAATTTATTTTTAAATTCTTGGA
1 TTCTCAAAATTTATTTTAAAATTCTTAGA
7381256 TTCTCAAAATTTTATTTTAAAATTCTTAGA
1 TTCTCAAAA-TTTATTTTAAAATTCTTAGA
7381286 TT
1 TT
7381288 GTCACGAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (29 bp):
TTCTCAAAATTTATTTTAAAATTCTTAGA
Found at i:7381273 original size:29 final size:30
Alignment explanation
Indices: 7381227--7381287 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
7381217 ATTATTTTAT
* *
7381227 TTCTTAAAATTTATTTTT-AAATTCTTGGA
1 TTCTCAAAATTTATTTTTAAAATTCTTAGA
7381256 TTCTCAAAATTT-TATTTTAAAATTCTTAGA
1 TTCTCAAAATTTAT-TTTTAAAATTCTTAGA
7381286 TT
1 TT
7381288 GTCACGAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 1 0.04
29 15 0.54
30 12 0.43
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (30 bp):
TTCTCAAAATTTATTTTTAAAATTCTTAGA
Found at i:7384447 original size:28 final size:27
Alignment explanation
Indices: 7384409--7384483 Score: 89
Period size: 28 Copynumber: 2.8 Consensus size: 27
7384399 AAAAATAAAA
*
7384409 ATTTATCAAAATATTATAAAATTTTTT
1 ATTTACCAAAATATTATAAAATTTTTT
* **
7384436 ATTTACCAAAAAATATATAATTTTTTTT
1 ATTTACCAAAATAT-TATAAAATTTTTT
*
7384464 ATTTATCAAAATA-TATAAAA
1 ATTTACCAAAATATTATAAAA
7384484 AAATCTGCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.13
27 12 0.31
28 22 0.56
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (27 bp):
ATTTACCAAAATATTATAAAATTTTTT
Found at i:7384561 original size:27 final size:27
Alignment explanation
Indices: 7384530--7384630 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
7384520 CCTTGGTCAC
* *
7384530 GCCAATGGCATTGGCAGCACCAAAGGT
1 GCCAATGCCATTGGCGGCACCAAAGGT
** * *
7384557 GCCAAAACCATTAGCGGCACCAAAAGT
1 GCCAATGCCATTGGCGGCACCAAAGGT
*
7384584 GCCAATGCCATTGGCGGCACCAATGGT
1 GCCAATGCCATTGGCGGCACCAAAGGT
7384611 GCCATATTG--ATTGGCGGCAC
1 GCCA-A-TGCCATTGGCGGCAC
7384631 TATTCGTATT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
27 58 0.95
28 1 0.02
29 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.27, T:0.17
Consensus pattern (27 bp):
GCCAATGCCATTGGCGGCACCAAAGGT
Found at i:7384802 original size:19 final size:21
Alignment explanation
Indices: 7384764--7384802 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
7384754 AAATTTTGAT
*
7384764 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
7384785 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
7384803 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:7390176 original size:159 final size:160
Alignment explanation
Indices: 7389731--7390185 Score: 391
Period size: 159 Copynumber: 2.8 Consensus size: 160
7389721 AAGTTGAAAA
* * * *
7389731 AAAAGTTAGTAAAAAAATCTTACTTCGGCCATTTATTCCTATTTTTTTCTCCGCATTTTATTACT
1 AAAAGTTAGT--AAAACTCTTACTTCTGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACT
**
7389796 TTAAAAAATATCAT-AATTTCTAATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAAT
64 TTAAAAAATATCATAAATTAGT-ATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAAT
* * *
7389860 TTATTACTCTAGTGTGTTATTTAAATTAATTTGGTGT
128 TTATTA--CTAGTGTATTATTT-AATGAATTT-GTAT
* ** * * *
7389897 AAAA---A--AAAACCCTTACCCCTGCCCTTTGCTCGTATTATTTTCT-CG-ATTTTTATTACTT
1 AAAAGTTAGTAAAACTCTTACTTCTGCCATTTGTTCGTATTTTTTTCTCCGCA-TTTTATTACTT
* * * ** * * * ** *
7389955 TAAATAAAAATAT-ATTATTCTCGTATTTTATTGTTTTATATTATTTCAATACATTTTCTTTGAA
65 T--A-AAAAATATCATAAAT-TAGTATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAA
*
7390019 ATATT-TTA-TA-T-TAATTATTT-CTGAATTT-TAT
126 AT-TTATTACTAGTGT-ATTATTTAATGAATTTGTAT
7390050 AAAAGTTAGTAATACACTCTTACTTCTGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACT
1 AAAAGTTAGTAA-A-ACTCTTACTTCTGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACT
* *
7390115 TTAAAAAATATCATAAACTTAGTCTTTTATAATTTTACATTATTTCAGTGCATCATGTTTGAAAT
64 TTAAAAAATATCATAAA-TTAGTATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAAT
7390180 TTATTA
128 TTATTA
7390186 ATTTAGTGTG
Statistics
Matches: 226, Mismatches: 43, Indels: 47
0.72 0.14 0.15
Matches are distributed among these distances:
153 6 0.03
155 6 0.03
156 2 0.01
157 8 0.04
158 28 0.12
159 72 0.32
160 33 0.15
161 61 0.27
162 5 0.02
163 1 0.00
166 4 0.02
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.48
Consensus pattern (160 bp):
AAAAGTTAGTAAAACTCTTACTTCTGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACTTT
AAAAAATATCATAAATTAGTATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAATTTA
TTACTAGTGTATTATTTAATGAATTTGTAT
Found at i:7390464 original size:16 final size:15
Alignment explanation
Indices: 7390443--7390472 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7390433 AATAAAACTA
7390443 TATTATTTTCATATTT
1 TATTATTTT-ATATTT
7390459 TATTATTTTATATT
1 TATTATTTTATATT
7390473 GTTTCAGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTATTTTATATTT
Found at i:7391037 original size:36 final size:36
Alignment explanation
Indices: 7390997--7391180 Score: 144
Period size: 36 Copynumber: 5.0 Consensus size: 36
7390987 TTTTTTTTTC
*
7390997 TTCCTTCCCTCTT-CTTCTTTTTTTTTCTCTTCTCCT
1 TTCCTTTCCT-TTCCTTCTTTTTTTTTCTCTTCTCCT
* ** *
7391033 TTCCTTTTCTTTCCTTCTTTTTTCCTCTCTTTTCCT
1 TTCCTTTCCTTTCCTTCTTTTTTTTTCTCTTCTCCT
* * *
7391069 TTTC-TTCTTCTTCTTTCTTTCTTTTTTTCTCTTCTCCT
1 TTCCTTTCCT-TTCCTTC-TT-TTTTTTTCTCTTCTCCT
* * *
7391107 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCT
1 TTCCTTTCCTTTCCTTCTTTTT-TTT-TCTCTTCTCCT
* *
7391145 TT-CTTT-CTTTCTTTCTTTCTTTCTTTC-CCTCTCCT
1 TTCCTTTCCTTTCCTTCTTT-TTT-TTTCTCTTCTCCT
7391180 T
1 T
7391181 CTGCCCCCCC
Statistics
Matches: 119, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
35 14 0.12
36 53 0.45
37 15 0.13
38 34 0.29
39 3 0.03
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (36 bp):
TTCCTTTCCTTTCCTTCTTTTTTTTTCTCTTCTCCT
Found at i:7391088 original size:4 final size:4
Alignment explanation
Indices: 7391079--7391171 Score: 84
Period size: 4 Copynumber: 22.8 Consensus size: 4
7391069 TTTCTTCTTC
* * *
7391079 TTCT TTCT TTCT TTTT TTCT CTTC- TCCT TTCCTT TTCT TTCC TTC- TT-T
1 TTCT TTCT TTCT TTCT TTCT -TTCT TTCT TT-C-T TTCT TTCT TTCT TTCT
*
7391127 TTCT TTCT TTCCT CTCCT TTCT TTCT TTCT TTCT TTCT TTCT TTC
1 TTCT TTCT TT-CT -TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC
7391172 CCTCTCCTTC
Statistics
Matches: 74, Mismatches: 7, Indels: 16
0.76 0.07 0.16
Matches are distributed among these distances:
3 6 0.08
4 55 0.74
5 9 0.12
6 4 0.05
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (4 bp):
TTCT
Found at i:7391090 original size:48 final size:48
Alignment explanation
Indices: 7391013--7391155 Score: 128
Period size: 48 Copynumber: 2.9 Consensus size: 48
7391003 CCCTCTTCTT
* *
7391013 CTTTTTTTTTC-TCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTTCCTCT-
1 CTTTTCTTTTCTTCTTCTTCTTT-C-TTTCTTTCCTTCTTTTTTCCTCTC
** * * *
7391061 CTTTTCCTTTTCTTCTTCTTCTTTCTTTCTTTTTTTCTCTTCTCCTTTC
1 CTTTT-CTTTTCTTCTTCTTCTTTCTTTCTTTCCTTCTTTTTTCCTCTC
* * *
7391110 CTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTTTCTTTC
1 CTTTTCTTTTCTTCTTCTTCTTTCTTT-CTTTCC-TTCTTT-TTTC
7391156 TTTCTTTCTT
Statistics
Matches: 75, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
48 43 0.57
49 14 0.19
50 15 0.20
51 3 0.04
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (48 bp):
CTTTTCTTTTCTTCTTCTTCTTTCTTTCTTTCCTTCTTTTTTCCTCTC
Found at i:7391102 original size:74 final size:74
Alignment explanation
Indices: 7391016--7391180 Score: 230
Period size: 74 Copynumber: 2.2 Consensus size: 74
7391006 TCTTCTTCTT
* *
7391016 TTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTTCCTCTCTTTTCCTTTTC-TTC-TTC
1 TTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTC-TTTTT-CTCTC-TTTCCTCTCCTTTCTTTC
7391079 -TTCTTTCTTTC
63 TTTCTTTCTTTC
*
7391090 TTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTTTCTTT
1 TTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTCTCTTTCCTCTCCTTTCTTTCTTT
7391155 CTTTCTTTC
66 CTTTCTTTC
* *
7391164 TTTCTTTC-CCTCTCCTT
1 TTTTTTTCTCTTCTCCTT
7391181 CTGCCCCCCC
Statistics
Matches: 83, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
71 8 0.10
72 7 0.08
73 16 0.19
74 52 0.63
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (74 bp):
TTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTCTCTTTCCTCTCCTTTCTTTCTTT
CTTTCTTTC
Found at i:7391246 original size:27 final size:27
Alignment explanation
Indices: 7391216--7391282 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
7391206 TATTATTAAG
7391216 TGGTGCCGCCAATGGTATTGGCA-CTAT
1 TGGTGCCGCCAATGGTATTGGCACCT-T
*
7391243 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGTATTGGCACCTT
*
7391270 TGGTGTCGCCAAT
1 TGGTGCCGCCAAT
7391283 CCCATTGGCG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 35 0.95
28 2 0.05
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.31
Consensus pattern (27 bp):
TGGTGCCGCCAATGGTATTGGCACCTT
Found at i:7391803 original size:26 final size:28
Alignment explanation
Indices: 7391748--7391803 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
7391738 TAAATTTAAT
** *
7391748 ATTATTGATGCAAGAATTTTGTTTTTTA
1 ATTATTGATGCAAGAATTTTGAGTTATA
7391776 ATTATTGATGCAA-AA-TTTGAGTTATA
1 ATTATTGATGCAAGAATTTTGAGTTATA
7391802 AT
1 AT
7391804 AGTGGTACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.40
27 2 0.08
28 13 0.52
ACGTcount: A:0.34, C:0.04, G:0.14, T:0.48
Consensus pattern (28 bp):
ATTATTGATGCAAGAATTTTGAGTTATA
Found at i:7407106 original size:42 final size:43
Alignment explanation
Indices: 7406998--7407157 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
7406988 ATCTCTTACA
* * * *
7406998 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCACTGTTCCAGACATGGTCTTACACGAAATCAAATATCG
* * **
7407041 ATGTCACTGTTCCAGACAGGGTCTTACACGAAATCGTATAT-G
1 ATGCCACTGTTCCAGACATGGTCTTACACGAAATCAAATATCG
* *
7407083 ATGCCGA-TGTTCTAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCC-ACTGTTCCAGACATGGTCTTACACG-AAATC-AAATATCG
* *
7407127 ATGCCAAC-GTCCCAGACGTGGTCTTACACGA
1 ATGCC-ACTGTTCCAGACATGGTCTTACACGA
7407158 TAACTTATAT
Statistics
Matches: 95, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.27
43 42 0.44
44 27 0.28
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTTCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:7422057 original size:24 final size:24
Alignment explanation
Indices: 7422007--7422058 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7421997 TTTTTAGGTC
* *
7422007 AAATAAATTATGTTAAGAAATGCT
1 AAATAAATTATATTAAGAAATACT
* * *
7422031 AAATATATTATATTAATAAATATT
1 AAATAAATTATATTAAGAAATACT
7422055 AAAT
1 AAAT
7422059 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATAAATTATATTAAGAAATACT
Found at i:7422605 original size:178 final size:177
Alignment explanation
Indices: 7422301--7422644 Score: 544
Period size: 178 Copynumber: 1.9 Consensus size: 177
7422291 AGGGTATTCA
* * ** * * * *
7422301 ATATGATAGAGATATTTGATCAGTTCTAAATTTTATATGCATGACAAATACAATTATATTGATAA
1 ATATAATAGAGATATTTGACCAGTTAAAAAATTTATATACATGACAAATACAATTATACTAATAA
*
7422366 ATTCAATTAGTTTTTACATTATGTAAGTGGAGCCCTCCTATGGACTTATACATAATTATTTATTA
66 ATTCAATTAGTTTTTACATTATGTAAGTGGACCCCTCCTATGGACTTATACATAATTATTTATTA
*
7422431 CATCAAGTAATTTTTTTTCTCAAATATGAAACTTTCATGTTTAGATAG
131 CACCAAGT-ATTTTTTTTCTCAAATATGAAACTTTCATGTTTAGATAG
*
7422479 ATATAATAGAGATATTTGACCAGTTAAAAAATTTATATACATGACAAATACAATTTTACTAATAA
1 ATATAATAGAGATATTTGACCAGTTAAAAAATTTATATACATGACAAATACAATTATACTAATAA
*
7422544 ATTTAATTAGTTTTTACATTATGTAAGTGGACCCCTCCTATGGACTTATACATAATTATTTATTA
66 ATTCAATTAGTTTTTACATTATGTAAGTGGACCCCTCCTATGGACTTATACATAATTATTTATTA
* **
7422609 CCCCTTGTATTTTTTTTCTCAAATATGAAACTTTCA
131 CACCAAGTATTTTTTTTCTCAAATATGAAACTTTCA
7422645 CATCCCAACT
Statistics
Matches: 151, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
177 28 0.19
178 123 0.81
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (177 bp):
ATATAATAGAGATATTTGACCAGTTAAAAAATTTATATACATGACAAATACAATTATACTAATAA
ATTCAATTAGTTTTTACATTATGTAAGTGGACCCCTCCTATGGACTTATACATAATTATTTATTA
CACCAAGTATTTTTTTTCTCAAATATGAAACTTTCATGTTTAGATAG
Found at i:7424486 original size:9 final size:9
Alignment explanation
Indices: 7424458--7424729 Score: 209
Period size: 9 Copynumber: 30.0 Consensus size: 9
7424448 GTCAACACGC
*
7424458 ATGTAAATT
1 ATGTAAGTT
* *
7424467 ATTTAATTT
1 ATGTAAGTT
7424476 ATGTAAGTT
1 ATGTAAGTT
7424485 ATGTAAGTT
1 ATGTAAGTT
* *
7424494 ATTTAATTT
1 ATGTAAGTT
7424503 ATGTAAGTT
1 ATGTAAGTT
7424512 ATGTAAGTT
1 ATGTAAGTT
*
7424521 A-GGAAGGTT
1 ATGTAA-GTT
7424530 ATGT-A-TT
1 ATGTAAGTT
7424537 ATGTAAGTT
1 ATGTAAGTT
*
7424546 ATTTAAGTT
1 ATGTAAGTT
7424555 ATGTAAGTT
1 ATGTAAGTT
*
7424564 ATTTAAGTT
1 ATGTAAGTT
* *
7424573 ATTTAATTT
1 ATGTAAGTT
7424582 ATGTAAGTT
1 ATGTAAGTT
7424591 ATGTAAGTT
1 ATGTAAGTT
* *
7424600 ATTTAATTT
1 ATGTAAGTT
7424609 ATGTAAGCTAT
1 ATGTAAG-T-T
* * *
7424620 TTAGAAAAAATT
1 AT-G--TAAGTT
7424632 ATGTAAGTT
1 ATGTAAGTT
7424641 ATGTACTAAGTT
1 ATG---TAAGTT
7424653 ATGT-A-TT
1 ATGTAAGTT
* *
7424660 ATGTAAATA
1 ATGTAAGTT
7424669 ATGTAAGTT
1 ATGTAAGTT
*
7424678 A-GGAAGGTT
1 ATGTAA-GTT
7424687 ATGT-A-TT
1 ATGTAAGTT
7424694 ATGTAAGTT
1 ATGTAAGTT
*
7424703 ATGTAATTT
1 ATGTAAGTT
*
7424712 ATATAAGTT
1 ATGTAAGTT
*
7424721 ATGCAAGTT
1 ATGTAAGTT
7424730 TATATATAAG
Statistics
Matches: 209, Mismatches: 36, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
7 18 0.09
8 10 0.05
9 160 0.77
10 3 0.01
11 3 0.01
12 12 0.06
13 1 0.00
14 2 0.01
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:7424496 original size:27 final size:27
Alignment explanation
Indices: 7424458--7424729 Score: 235
Period size: 27 Copynumber: 10.3 Consensus size: 27
7424448 GTCAACACGC
*
7424458 ATGTAAATTATTTAATTTATGTAAGTT
1 ATGTAAGTTATTTAATTTATGTAAGTT
7424485 ATGTAAGTTATTTAATTTATGTAAGTT
1 ATGTAAGTTATTTAATTTATGTAAGTT
** *
7424512 ATGTAAGTTA-GGAAGGTTATGT-A-TT
1 ATGTAAGTTATTTAA-TTTATGTAAGTT
*
7424537 ATGTAAGTTATTTAAGTTATGTAAGTT
1 ATGTAAGTTATTTAATTTATGTAAGTT
*
7424564 ATTTAAGTTATTTAATTTATGTAAGTT
1 ATGTAAGTTATTTAATTTATGTAAGTT
*
7424591 ATGTAAGTTATTTAATTTATGTAAGCT
1 ATGTAAGTTATTTAATTTATGTAAGTT
* ** *
7424618 AT-TTAG--A-AAAAATTATGTAAGTT
1 ATGTAAGTTATTTAATTTATGTAAGTT
* * *
7424641 ATGTACTAAGTTATGT-A-TTATGTAAATA
1 ATG---TAAGTTATTTAATTTATGTAAGTT
** *
7424669 ATGTAAGTTA-GGAAGGTTATGT-A-TT
1 ATGTAAGTTATTTAA-TTTATGTAAGTT
* *
7424694 ATGTAAGTTATGTAATTTATATAAGTT
1 ATGTAAGTTATTTAATTTATGTAAGTT
*
7424721 ATGCAAGTT
1 ATGTAAGTT
7424730 TATATATAAG
Statistics
Matches: 202, Mismatches: 26, Indels: 34
0.77 0.10 0.13
Matches are distributed among these distances:
23 14 0.07
24 2 0.01
25 43 0.21
26 14 0.07
27 115 0.57
28 12 0.06
29 2 0.01
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (27 bp):
ATGTAAGTTATTTAATTTATGTAAGTT
Found at i:7424876 original size:17 final size:18
Alignment explanation
Indices: 7424844--7424877 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7424834 TGATTGATAA
7424844 ATTTTGAAAAAAATATAG
1 ATTTTGAAAAAAATATAG
*
7424862 ATTTT-AAAAATATATA
1 ATTTTGAAAAAAATATA
7424878 TTAAAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
ATTTTGAAAAAAATATAG
Found at i:7424915 original size:9 final size:9
Alignment explanation
Indices: 7424901--7424935 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
7424891 TAAATATTTA
7424901 TAAGTTATG
1 TAAGTTATG
*
7424910 TAAGTTATA
1 TAAGTTATG
*
7424919 TAATTTATG
1 TAAGTTATG
7424928 TAAGTTAT
1 TAAGTTAT
7424936 ATAATTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7424926 original size:18 final size:18
Alignment explanation
Indices: 7424899--7424943 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
7424889 TATAAATATT
*
7424899 TATAAGTTATGTAAGTTA
1 TATAATTTATGTAAGTTA
7424917 TATAATTTATGTAAGTTA
1 TATAATTTATGTAAGTTA
7424935 TATAATTTA
1 TATAATTTA
7424944 AAAATTGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
TATAATTTATGTAAGTTA
Found at i:7425600 original size:13 final size:13
Alignment explanation
Indices: 7425567--7425604 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7425557 AAAGAACTTG
7425567 CAACAACATTAAC
1 CAACAACATTAAC
*
7425580 C-CCTAACATTAAC
1 CAAC-AACATTAAC
7425593 CAACAACATTAA
1 CAACAACATTAA
7425605 GCAGAACTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (13 bp):
CAACAACATTAAC
Found at i:7427616 original size:7 final size:7
Alignment explanation
Indices: 7427604--7427656 Score: 61
Period size: 7 Copynumber: 7.6 Consensus size: 7
7427594 CCTTAGACAT
7427604 TAAACCC
1 TAAACCC
7427611 TAAACCC
1 TAAACCC
*
7427618 TTAACCC
1 TAAACCC
* *
7427625 TTAACAC
1 TAAACCC
7427632 TAAACCC
1 TAAACCC
*
7427639 TTAACCC
1 TAAACCC
*
7427646 TTAACCC
1 TAAACCC
7427653 TAAA
1 TAAA
7427657 TTAACCTAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:7427636 original size:21 final size:21
Alignment explanation
Indices: 7427610--7427656 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
7427600 ACATTAAACC
7427610 CTAAACCCTTAACCCTTAACA
1 CTAAACCCTTAACCCTTAACA
*
7427631 CTAAACCCTTAACCCTTAACC
1 CTAAACCCTTAACCCTTAACA
7427652 CTAAA
1 CTAAA
7427657 TTAACCTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.23
Consensus pattern (21 bp):
CTAAACCCTTAACCCTTAACA
Found at i:7427855 original size:15 final size:16
Alignment explanation
Indices: 7427833--7427875 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
7427823 ACATTAACTA
7427833 TAAACCCTTAAACCCC
1 TAAACCCTTAAACCCC
7427849 T-AACCCTT-AA-CCC
1 TAAACCCTTAAACCCC
*
7427862 TAAACACTTAAACC
1 TAAACCCTTAAACC
7427876 TTAGACCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
13 4 0.17
14 8 0.35
15 9 0.39
16 2 0.09
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (16 bp):
TAAACCCTTAAACCCC
Found at i:7427975 original size:14 final size:14
Alignment explanation
Indices: 7427955--7427987 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7427945 TAGAACATAT
7427955 ATAAACCCTAAATC
1 ATAAACCCTAAATC
*
7427969 CTAAACCCTAAATC
1 ATAAACCCTAAATC
7427983 ATAAA
1 ATAAA
7427988 ACATATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAACCCTAAATC
Found at i:7428013 original size:39 final size:40
Alignment explanation
Indices: 7427927--7428019 Score: 136
Period size: 39 Copynumber: 2.4 Consensus size: 40
7427917 TCAGCCATAT
* *
7427927 TCCTTAAACCTTAAATCATAGAACATATATAAACCCTAAA
1 TCCTTAAACCTTAAATCATAAAACATATATAAACCATAAA
* *
7427967 TCC-TAAACCCTAAATCATAAAACATATATAAACTATAAA
1 TCCTTAAACCTTAAATCATAAAACATATATAAACCATAAA
7428006 -CCTTAAACCTTAAA
1 TCCTTAAACCTTAAA
7428020 CCTCAACCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.04
39 42 0.89
40 3 0.06
ACGTcount: A:0.49, C:0.23, G:0.01, T:0.27
Consensus pattern (40 bp):
TCCTTAAACCTTAAATCATAAAACATATATAAACCATAAA
Found at i:7433346 original size:14 final size:14
Alignment explanation
Indices: 7433327--7433354 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7433317 TACTATAATA
7433327 CTATATTTGATGTC
1 CTATATTTGATGTC
7433341 CTATATTTGATGTC
1 CTATATTTGATGTC
7433355 AAGAACATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
CTATATTTGATGTC
Found at i:7434338 original size:2 final size:2
Alignment explanation
Indices: 7434331--7434365 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7434321 TTGTGTAAGG
7434331 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7434366 GATGTTAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7461884 original size:63 final size:62
Alignment explanation
Indices: 7461696--7461887 Score: 303
Period size: 63 Copynumber: 3.0 Consensus size: 62
7461686 TCACACGAAG
* * *
7461696 ATATTCTTATCACATCAGGAATGAAGCGCATCTTAATAGAGTTTGAATTATCAAATGTAAGTC
1 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTA-CAAATTTAAGTT
*
7461759 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTACCAAATTGAAGTT
1 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTA-CAAATTTAAGTT
* *
7461822 ATATTCTTATCACATCAGGAATGGGGCACATCTTAATAGAGTTTGAATTACGAAATTTAAGTT
1 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTAC-AAATTTAAGTT
7461885 ATA
1 ATA
7461888 AATCAGGTTG
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
62 1 0.01
63 119 0.99
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (62 bp):
ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTACAAATTTAAGTT
Found at i:7467783 original size:116 final size:114
Alignment explanation
Indices: 7467527--7467873 Score: 527
Period size: 116 Copynumber: 3.0 Consensus size: 114
7467517 TAAATTATTT
* * *
7467527 TAAATCCCTAAGCATTAGCGGCGC-TTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAAC
* *
7467591 GGCGCCGTTGGGCTTAGTTTTTTATGCGGCGCTTTCCCAAAAACGACGC
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
* * * *
7467640 TAAAGCCTTGAGCATTAGCGGCGCTTTCTTAAAAATGCTGCTAAATCCCTGAAAGCTCAGAAAAT
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAAC
7467705 GGCGCCGTTGGGCTTAGTTTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
66 GGCGCCGTTGGGCTTAG--TTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
* *
7467756 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCT-CTAAATCCCCGATAGCTTAGAAAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACG-CTGCTAAATCCCCGAAAGCTCAGAAAA
* * *
7467820 CGACGCCGTTGGGCTTAGTTTTTTTTGTGGCGCTTCCCCAAAAACGCCGC
65 CGGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
7467870 TAAA
1 TAAA
7467874 TCCCAAAAGC
Statistics
Matches: 212, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
113 21 0.10
114 87 0.41
116 102 0.48
117 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (114 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAAATCCCCGAAAGCTCAGAAAAC
GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
Found at i:7467955 original size:72 final size:72
Alignment explanation
Indices: 7467773--7468008 Score: 303
Period size: 72 Copynumber: 3.3 Consensus size: 72
7467763 CTGAGCATTA
** * * *
7467773 GCGGCGCTTTCTTAAAAACGCCTCTAAATCCCCGATAGCTTAGAAAACGACGCCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
*
7467838 TTTTTTTT
66 -GTTTTTT
* * * * *
7467846 GTGGCGCTTCCCCAAAAACGCCGCTAAAT-CCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
7467910 GTTTTTT
66 GTTTTTT
* * * *
7467917 GCAGCGCTTTCTCAAAAACGCCTCTAAATCCCCGAAAGCTTAGAAAACGGTGTCGTTTGGCTTAG
1 GCGGCGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
7467982 GTTTTTTT
66 G-TTTTTT
*
7467990 GCGGCGCTTACCCAAAAAC
1 GCGGCGCTTTCCCAAAAAC
7468009 ACCGCTAAGG
Statistics
Matches: 138, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
71 30 0.22
72 62 0.45
73 46 0.33
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (72 bp):
GCGGCGCTTTCCCAAAAACGCCTCTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTT
Found at i:7468120 original size:114 final size:114
Alignment explanation
Indices: 7467920--7468130 Score: 359
Period size: 114 Copynumber: 1.9 Consensus size: 114
7467910 GTTTTTTGCA
* * * *
7467920 GCGCTTTCTCAAAAACGCCTCTAAATCCCCGAAAGCTTAGAAAACGGTGTCGTTTGGCTTAGGTT
1 GCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGGTT
7467985 TTTTTGCGGCGCTTACCCAAAAACACCGCTAAGGCCCTGAACATTAGCG
66 TTTTTGCGGCGCTTACCCAAAAACACCGCTAAGGCCCTGAACATTAGCG
7468034 GCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGGTT
1 GCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGGTT
* * *
7468099 TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
66 TTTTTGCGGCGCTTACCCAAAAACACCGCTAA
7468131 ATCCCCGAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 90 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (114 bp):
GCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGGTT
TTTTTGCGGCGCTTACCCAAAAACACCGCTAAGGCCCTGAACATTAGCG
Found at i:7468122 original size:258 final size:259
Alignment explanation
Indices: 7467660--7468257 Score: 851
Period size: 258 Copynumber: 2.3 Consensus size: 259
7467650 AGCATTAGCG
* * * * * *
7467660 GCGCTTTCTTAAAAATG-CTGCTAAATCCCTGAAAGCTCAGAAAATGGCGCCGTTGGGCTTAGTT
1 GCGCTTTCTCAAAAACGCCT-CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG--
* * * * *
7467724 TTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
63 ATTTTTTTGCGGCGCTTACCCAAAAACACCGCTAAAGCCCTGAACATTAGCGGCGCTTTCTAAAA
* * * * *
7467789 AACGCCTCTAAATCCCCGATAGCTTAGAAAACGACGCCGTTGGGCTTAGTTTTTTTTGTGGCGCT
128 AACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAGGTTTTTTTGCGGCGCT
*
7467854 TCCCCAAAAACGCCGCTAAAT-CCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-TTTTTT
193 TCCCCAAAAACGCCGCTAAATCCCCAAAAGCTCA-AAAACGGCATCGTTGGGCTTAGGTTTTTTT
7467917 GCA
257 GCA
* * *
7467920 GCGCTTTCTCAAAAACGCCTCTAAATCCCCGAAAGCTTAGAAAACGGTGTCGTTTGGCTTAGGTT
1 GCGCTTTCTCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGATT
*
7467985 TTTTTGCGGCGCTTACCCAAAAACACCGCTAAGGCCCTGAACATTAGCGGCGCTTTCTAAAAAAC
66 TTTTTGCGGCGCTTACCCAAAAACACCGCTAAAGCCCTGAACATTAGCGGCGCTTTCTAAAAAAC
* * * *
7468050 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGGTTTTTTTGCGGCGCTTTC
131 GCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCC
* * * *
7468115 TCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAACGGCATCGTTTGGCTTAGGTTTTTTTGCG
196 CCAAAAACGCCGCTAAATCCCCAAAAGCTCAAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCA
* * *
7468179 GCGCTTTATCAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAGATT
1 GCGCTTTCTCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGATT
7468244 TTTTTGCGGCGCTT
66 TTTTTGCGGCGCTT
7468258 TCTTAAAAAC
Statistics
Matches: 301, Mismatches: 34, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
258 156 0.52
259 92 0.31
260 51 0.17
261 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (259 bp):
GCGCTTTCTCAAAAACGCCTCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGATT
TTTTTGCGGCGCTTACCCAAAAACACCGCTAAAGCCCTGAACATTAGCGGCGCTTTCTAAAAAAC
GCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCC
CCAAAAACGCCGCTAAATCCCCAAAAGCTCAAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCA
Found at i:7468191 original size:72 final size:73
Alignment explanation
Indices: 7468031--7468347 Score: 449
Period size: 73 Copynumber: 4.4 Consensus size: 73
7468021 CTGAACATTA
* *
7468031 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
7468096 GTTTTTTT
66 GTTTTTTT
*
7468104 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTC-AAAAACGGCATCGTTTGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
7468168 GTTTTTTT
66 GTTTTTTT
* *
7468176 GCGGCGCTTTATCAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
*
7468241 ATTTTTTT
66 GTTTTTTT
* * * * *** * * *
7468249 GCGGCGCTTTCTTAAAAACGTCGCTAACTCTCCGAAAGCTCGGTAAATGGCGTCGGTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
7468314 G-TTTTTT
66 GTTTTTTT
** *
7468321 GCGGCGCTTTCTGGAAAACGCCTCTAA
1 GCGGCGCTTTCTCAAAAACGCCGCTAA
7468348 TGATCGATCT
Statistics
Matches: 219, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
72 97 0.44
73 122 0.56
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (73 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
GTTTTTTT
Found at i:7468339 original size:145 final size:145
Alignment explanation
Indices: 7468031--7468347 Score: 456
Period size: 145 Copynumber: 2.2 Consensus size: 145
7468021 CTGAACATTA
* *
7468031 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
1 GCGGCGCTTTCTAAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
* * *
7468096 GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAACGGCATCGTTT
66 ATTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAACGGCATCGGTG
7468161 GGCTTAGGTTTTTTT
131 GGCTTAGGTTTTTTT
* *
7468176 GCGGCGCTTTATCAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
1 GCGGCGCTTTCTAAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
* * * * ** * *
7468241 ATTTTTTTGCGGCGCTTTCTTAAAAACGTCGCTAACTCTCCGAAAGCTCGGTAAATGGCGTCGGT
66 ATTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTC-AAAAACGGCATCGGT
7468306 GGGCTTAGG-TTTTTT
130 GGGCTTAGGTTTTTTT
** *
7468321 GCGGCGCTTTCTGGAAAACGCCTCTAA
1 GCGGCGCTTTCTAAAAAACGCCACTAA
7468348 TGATCGATCT
Statistics
Matches: 152, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
145 134 0.88
146 18 0.12
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (145 bp):
GCGGCGCTTTCTAAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTTGGCTTAG
ATTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAACGGCATCGGTG
GGCTTAGGTTTTTTT
Found at i:7469179 original size:42 final size:46
Alignment explanation
Indices: 7469132--7469228 Score: 116
Period size: 45 Copynumber: 2.2 Consensus size: 46
7469122 AGCTATTAAA
7469132 AAAATAATA-TATGA-TA-AATTTAAAAC-ATA-TCAATAATAA-TTT
1 AAAATAATAGTAT-ATTACAATTTAAAACTATACT-AATAATAAGTTT
*
7469174 AAAATAATAGTATATTACATTTTAAAACTATACTAATAATAAGTTT
1 AAAATAATAGTATATTACAATTTAAAACTATACTAATAATAAGTTT
7469220 AAAAGTAAT
1 AAAA-TAAT
7469229 GTCAAACTAA
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
42 10 0.21
43 5 0.11
44 9 0.19
45 11 0.23
46 8 0.17
47 4 0.09
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (46 bp):
AAAATAATAGTATATTACAATTTAAAACTATACTAATAATAAGTTT
Found at i:7469220 original size:23 final size:21
Alignment explanation
Indices: 7469148--7469223 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 21
7469138 ATATATGATA
7469148 AATTTAAAAC-ATATCAATAAT
1 AATTTAAAACTATAT-AATAAT
*
7469169 AATTTAAAA-TA-ATAGTATATT
1 AATTTAAAACTATATA--ATAAT
7469190 ACATTTTAAAACTATACTAATAAT
1 A-A-TTTAAAACTATA-TAATAAT
7469214 AAGTTTAAAA
1 AA-TTTAAAA
7469224 GTAATGTCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
19 1 0.02
20 2 0.05
21 15 0.34
22 1 0.02
23 15 0.34
24 7 0.16
25 1 0.02
26 2 0.05
ACGTcount: A:0.54, C:0.07, G:0.03, T:0.37
Consensus pattern (21 bp):
AATTTAAAACTATATAATAAT
Found at i:7469354 original size:3 final size:3
Alignment explanation
Indices: 7469346--7469376 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7469336 AATATAAAGA
7469346 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7469377 GGATTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7469412 original size:6 final size:6
Alignment explanation
Indices: 7469401--7469447 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
7469391 ATTGGAATTC
* *
7469401 AAATAA AAATAA AAATAA AAATAA AACACTAC AAATAG AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AA-A-TAA AAATAA AAATAA AAA
7469448 AAGAAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 30 0.83
7 2 0.06
8 4 0.11
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:7470694 original size:18 final size:18
Alignment explanation
Indices: 7470647--7470682 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7470637 ACGGATGGAC
7470647 TTTTA-ATA-ATTTTTGT
1 TTTTATATATATTTTTGT
7470663 TTTTATATATATTTTTGT
1 TTTTATATATATTTTTGT
7470681 TT
1 TT
7470683 ATTTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 3 0.17
18 10 0.56
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (18 bp):
TTTTATATATATTTTTGT
Found at i:7471733 original size:25 final size:24
Alignment explanation
Indices: 7471689--7471735 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
7471679 ATTACTAAAA
*
7471689 ACTATATTTTAAAATTTTTAATAG
1 ACTATATTTTAAAATGTTTAATAG
7471713 ACTATATATTTAAACA-GTTTAAT
1 ACTATAT-TTTAAA-ATGTTTAAT
7471736 TATTACTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 12 0.60
26 1 0.05
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (24 bp):
ACTATATTTTAAAATGTTTAATAG
Found at i:7475951 original size:15 final size:15
Alignment explanation
Indices: 7475916--7475944 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7475906 AAATAAAAGC
7475916 AATAATGATAATAAT
1 AATAATGATAATAAT
7475931 AATAATGATAATAA
1 AATAATGATAATAA
7475945 AACTAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (15 bp):
AATAATGATAATAAT
Found at i:7475988 original size:16 final size:17
Alignment explanation
Indices: 7475969--7476014 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
7475959 TAAAAACAAT
*
7475969 AAATAAATAAAAAGAC-
1 AAATAAATAAAAAAACA
7475985 AAAT-AATAATAAAAACA
1 AAATAAATAA-AAAAACA
7476002 AAATAAAATAAAA
1 AAAT-AAATAAAA
7476015 CGGGACTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 5 0.20
16 9 0.36
17 4 0.16
18 2 0.08
19 5 0.20
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.15
Consensus pattern (17 bp):
AAATAAATAAAAAAACA
Found at i:7479176 original size:9 final size:9
Alignment explanation
Indices: 7479144--7479219 Score: 71
Period size: 9 Copynumber: 7.9 Consensus size: 9
7479134 GAATAACCCT
7479144 TAAATAATTA
1 TAAA-AATTA
*
7479154 TAAAAATAA
1 TAAAAATTA
*
7479163 AAAAAATTA
1 TAAAAATTA
7479172 TAAAAATTA
1 TAAAAATTA
*
7479181 TATAAGATTA
1 TA-AAAATTA
7479191 TAATAAATTA
1 TAA-AAATTA
*
7479201 TTAAAAGTTA
1 -TAAAAATTA
7479211 TAAATAATT
1 TAAA-AATT
7479220 GTCATCTAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
9 26 0.48
10 25 0.46
11 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (9 bp):
TAAAAATTA
Found at i:7479176 original size:10 final size:10
Alignment explanation
Indices: 7479144--7479219 Score: 59
Period size: 10 Copynumber: 7.9 Consensus size: 10
7479134 GAATAACCCT
*
7479144 TAAATAATTA
1 TAAAAAATTA
7479154 T-AAAAA-TA
1 TAAAAAATTA
*
7479162 AAAAAAATTA
1 TAAAAAATTA
7479172 T-AAAAATTA
1 TAAAAAATTA
* *
7479181 TATAAGATTA
1 TAAAAAATTA
*
7479191 TAATAAATTA
1 TAAAAAATTA
* *
7479201 TTAAAAGTTA
1 TAAAAAATTA
*
7479211 TAAATAATT
1 TAAAAAATT
7479220 GTCATCTAAG
Statistics
Matches: 49, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
8 2 0.04
9 18 0.37
10 29 0.59
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:7479211 original size:20 final size:18
Alignment explanation
Indices: 7479151--7479219 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 18
7479141 CCTTAAATAA
* * *
7479151 TTATAAAAATAAAAAAAA
1 TTATAAAAATTATAAAAG
*
7479169 TTATAAAAATTATATAAG
1 TTATAAAAATTATAAAAG
7479187 ATTATAATAAATTATTAAAAG
1 -TTATAA-AAATTA-TAAAAG
7479208 TTATAAATAATT
1 TTATAAA-AATT
7479220 GTCATCTAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
18 14 0.33
19 7 0.17
20 16 0.38
21 5 0.12
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
TTATAAAAATTATAAAAG
Found at i:7479554 original size:10 final size:10
Alignment explanation
Indices: 7479539--7479582 Score: 56
Period size: 9 Copynumber: 4.6 Consensus size: 10
7479529 CCATTTTGTT
7479539 TTATAAAAAA
1 TTATAAAAAA
7479549 TTAT-AAAAA
1 TTATAAAAAA
*
7479558 TTATAGAAAA
1 TTATAAAAAA
*
7479568 -TATGAAAAA
1 TTATAAAAAA
7479577 TTATAA
1 TTATAA
7479583 TTTTTGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 16 0.57
10 12 0.43
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:7479567 original size:19 final size:19
Alignment explanation
Indices: 7479539--7479582 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
7479529 CCATTTTGTT
7479539 TTATAAAAAATTAT-AAAAA
1 TTATAAAAAA-TATGAAAAA
*
7479558 TTATAGAAAATATGAAAAA
1 TTATAAAAAATATGAAAAA
7479577 TTATAA
1 TTATAA
7479583 TTTTTGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
TTATAAAAAATATGAAAAA
Found at i:7480286 original size:48 final size:50
Alignment explanation
Indices: 7480173--7480291 Score: 134
Period size: 48 Copynumber: 2.4 Consensus size: 50
7480163 CTTTTACTTT
*
7480173 TTCCCAAAAATTTTACCTTCCCCAATACCTCCAAAACTTTTTTCCTTTTAC
1 TTCCCAAAAATTTTA-CTTCCCCAATACCTCCAAAACTTTTCTCCTTTTAC
* * * * * *
7480224 TTTCCAAAATTTTTACTTCCCCAA-A-TTCCCAAACTTTTCTGCTTTTGC
1 TTCCCAAAAATTTTACTTCCCCAATACCTCCAAAACTTTTCTCCTTTTAC
* *
7480272 TTCCCCAAACTTTTACTTCC
1 TTCCCAAAAATTTTACTTCC
7480292 TCCTAAACCC
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 35 0.60
49 1 0.02
50 9 0.16
51 13 0.22
ACGTcount: A:0.24, C:0.33, G:0.02, T:0.41
Consensus pattern (50 bp):
TTCCCAAAAATTTTACTTCCCCAATACCTCCAAAACTTTTCTCCTTTTAC
Found at i:7480523 original size:19 final size:20
Alignment explanation
Indices: 7480479--7480523 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
7480469 GGTATCAATT
*
7480479 TCACA-TTTTATTTTTAAAA
1 TCACATTTTTATTTTAAAAA
*
7480498 T-AAATTTTTA-TTTAAAAA
1 TCACATTTTTATTTTAAAAA
7480516 TCACATTT
1 TCACATTT
7480524 GTTACATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (20 bp):
TCACATTTTTATTTTAAAAA
Found at i:7481479 original size:16 final size:18
Alignment explanation
Indices: 7481440--7481473 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7481430 TAAGTTTATA
7481440 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
7481457 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
7481474 AATTTAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:7486224 original size:20 final size:21
Alignment explanation
Indices: 7486201--7486245 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
7486191 GTCCCAAAAA
7486201 TTATTA-T-TTTAGATTCGTTT
1 TTATTATTCTTTAGATT-GTTT
*
7486221 TTA-TATTCTTTAGATTTTTT
1 TTATTATTCTTTAGATTGTTT
7486241 TTATT
1 TTATT
7486246 TTTGTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
19 2 0.10
20 10 0.48
21 9 0.43
ACGTcount: A:0.20, C:0.04, G:0.07, T:0.69
Consensus pattern (21 bp):
TTATTATTCTTTAGATTGTTT
Found at i:7491373 original size:114 final size:113
Alignment explanation
Indices: 7491173--7491512 Score: 410
Period size: 114 Copynumber: 3.0 Consensus size: 113
7491163 CTTTCAGAAA
* * * *
7491173 TTTAGCGGCGTTTTTGAGAACGCACCACAAAAAAACATAAGCCCAACGACGTCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCACCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
7491238 TTCGGGGATTTAGTGGCGTTTTTAGGTAAGCGCCGCTAATGCTCAGGGC
65 TTCGGGGATTTAGTGGCGTTTTTAGGTAAGCGCCGCTAATGCTCAGGGC
* * *
7491287 TTTAGCGGCATTTTTGGGAAAGCACTGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAA-ACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * * * * * *
7491352 TTCAGAGATTTAGTGGCGTTTTTAAGTAATCGTCTCTAATGTTCAGGGC
65 TTCGGGGATTTAGTGGCGTTTTTAGGTAAGCGCCGCTAATGCTCAGGGC
*** * * * * *
7491401 TTTAGCGGCGTTTACCAGAAAGCGCCGCAAAAAACCTAAGCCCAACAACGCCGTTTACCGAGATT
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * ** * *
7491466 TCGGGGATTTAGCGGTGTTTTCGGGAAAGCGCCGCTAGTGCTCAGGG
66 TCGGGGATTTAGTGGCGTTTTTAGGTAAGCGCCGCTAATGCTCAGGG
7491513 ACTTCGTGGC
Statistics
Matches: 187, Mismatches: 38, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
113 67 0.36
114 120 0.64
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (113 bp):
TTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGTGGCGTTTTTAGGTAAGCGCCGCTAATGCTCAGGGC
Found at i:7491596 original size:88 final size:88
Alignment explanation
Indices: 7491446--7491614 Score: 232
Period size: 88 Copynumber: 1.9 Consensus size: 88
7491436 CTAAGCCCAA
* ** * *
7491446 CAACGCCGTTTACCGAGATTTCGGGGATTTAGCGGTGTTTTCGGGAAAGCGCCGCTAGTGCTCAG
1 CAACACCGTTTACCGAGATTTCGGGGATTTAGCGGTCATTTCGGGAAAGCGCCGCAAATGCTCAG
*
7491511 GGACTTCGTGGCGTTTTTAAGCC
66 GGACTTCGCGGCGTTTTTAAGCC
* * *
7491534 CAACACCGTTTTCTGAGCTTTCGGGGATTTAGCGG-CATTTCGGAGAAAGCGCCGCAAATGCTCA
1 CAACACCGTTTACCGAGATTTCGGGGATTTAGCGGTCATTTCGG-GAAAGCGCCGCAAATGCTCA
*
7491598 GGGATTTCGCGGCGTTT
65 GGGACTTCGCGGCGTTT
7491615 CGGAGAAAGC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
87 6 0.09
88 64 0.91
ACGTcount: A:0.18, C:0.23, G:0.31, T:0.28
Consensus pattern (88 bp):
CAACACCGTTTACCGAGATTTCGGGGATTTAGCGGTCATTTCGGGAAAGCGCCGCAAATGCTCAG
GGACTTCGCGGCGTTTTTAAGCC
Found at i:7491717 original size:73 final size:72
Alignment explanation
Indices: 7491598--7491779 Score: 231
Period size: 73 Copynumber: 2.5 Consensus size: 72
7491588 CAAATGCTCA
* * * ** *
7491598 GGGATTTCGCGGCGTTTCGGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGATGCCGTTTTCTG
1 GGGATTTAGCGGCGTTTC-TAAAAAGCGCCGCTAATGAACCTAAGCCCAACGATGCCATTTTCTG
7491662 AGCTTTTCC
65 AGC-TTTCC
*
7491671 GGGATTTAGCGGCGTTTCTAAAAAACGCCGCTAATGAACCTAAGCCCAACGATGCCATTTTCTGA
1 GGGATTTAGCGGCGTTTCTAAAAAGCGCCGCTAATGAACCTAAGCCCAACGATGCCATTTTCTGA
*
7491736 GCTTTCG
66 GCTTTCC
* * *
7491743 GGGATTTAGCGGCATTTTTCGAAAAGCGCCGCTAATG
1 GGGATTTAGCGGCGTTTCT-AAAAAGCGCCGCTAATG
7491780 CTCAAGGATT
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
72 31 0.33
73 64 0.67
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (72 bp):
GGGATTTAGCGGCGTTTCTAAAAAGCGCCGCTAATGAACCTAAGCCCAACGATGCCATTTTCTGA
GCTTTCC
Found at i:7492083 original size:38 final size:37
Alignment explanation
Indices: 7492027--7492110 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 37
7492017 GGATTTAATG
* ** *
7492027 TTTAGGGGTTAGGTGTTATGTTTTAAGGGTTAGGGGGA
1 TTTAGGGGTTAGGAGTTATACTTTAAGGGTTA-AGGGA
* *
7492065 TTTAGGGGTTAGGAGTTATACTTTAGGGGTTAATGGA
1 TTTAGGGGTTAGGAGTTATACTTTAAGGGTTAAGGGA
7492102 TTTAGGGGT
1 TTTAGGGGT
7492111 AATGGGTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
37 12 0.30
38 28 0.70
ACGTcount: A:0.20, C:0.01, G:0.39, T:0.39
Consensus pattern (37 bp):
TTTAGGGGTTAGGAGTTATACTTTAAGGGTTAAGGGA
Found at i:7492115 original size:15 final size:15
Alignment explanation
Indices: 7492086--7492137 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
7492076 GGAGTTATAC
7492086 TTTAGGGGTTAATGGA
1 TTTAGGGG-TAATGGA
7492102 TTTAGGGGTAATGG-
1 TTTAGGGGTAATGGA
* * * *
7492116 GTTATGGTTTATGGA
1 TTTAGGGGTAATGGA
7492131 TTTAGGG
1 TTTAGGG
7492138 TTTAAGGTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
14 10 0.34
15 11 0.38
16 8 0.28
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.40
Consensus pattern (15 bp):
TTTAGGGGTAATGGA
Found at i:7492141 original size:15 final size:14
Alignment explanation
Indices: 7492086--7492151 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 14
7492076 GGAGTTATAC
7492086 TTTAGGGGTTAATGG
1 TTTA-GGGTTAATGG
*
7492101 ATTTAGGGGTAATGG
1 -TTTAGGGTTAATGG
* * *
7492116 GTTATGGTTTATGG
1 TTTAGGGTTAATGG
7492130 ATTTAGGGTTTAA-GG
1 -TTTAGGG-TTAATGG
7492145 TTTAGGG
1 TTTAGGG
7492152 CTTCAACGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
14 17 0.43
15 16 0.40
16 7 0.17
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (14 bp):
TTTAGGGTTAATGG
Found at i:7492815 original size:21 final size:21
Alignment explanation
Indices: 7492786--7492833 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7492776 GACCAAATAC
*
7492786 ATAAGAAATGA-AATAAAAAAA
1 ATAAAAAATGACAA-AAAAAAA
7492807 ATAAAAAATGACAAAAAAAAA
1 ATAAAAAATGACAAAAAAAAA
*
7492828 CTAAAA
1 ATAAAA
7492834 TTTACAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.77, C:0.04, G:0.06, T:0.12
Consensus pattern (21 bp):
ATAAAAAATGACAAAAAAAAA
Found at i:7494969 original size:39 final size:36
Alignment explanation
Indices: 7494910--7495050 Score: 140
Period size: 39 Copynumber: 3.7 Consensus size: 36
7494900 TAACAGAATG
* *
7494910 TTAAATACATGACTTACTAAAATTTAAGTATATATTAC
1 TTAAATACATTACTTACTAAAATTTAA-T-TACATTAC
** *
7494948 ATTACTTACATTACTTACTAAAATAT-ATTACATTAC
1 -TTAAATACATTACTTACTAAAATTTAATTACATTAC
*
7494984 TTAAATATATTACTTACTAAAATGTATAACTTACATTAC
1 TTAAATACATTACTTACTAAAAT-T-TAA-TTACATTAC
*
7495023 TTAAATATATTACATTACTTAAAATTTA
1 TTAAATACATTAC-TTAC-TAAAATTTA
7495051 TATATATATA
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
35 20 0.23
36 7 0.08
37 2 0.02
38 2 0.02
39 45 0.52
40 5 0.06
41 6 0.07
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (36 bp):
TTAAATACATTACTTACTAAAATTTAATTACATTAC
Found at i:7494983 original size:18 final size:18
Alignment explanation
Indices: 7494957--7495047 Score: 105
Period size: 18 Copynumber: 4.9 Consensus size: 18
7494947 CATTACTTAC
7494957 ATTAC-TTACTAAAATAT
1 ATTACATTACTAAAATAT
*
7494974 ATTACATTACTTAAATAT
1 ATTACATTACTAAAATAT
7494992 ATTAC-TTACTAAAATGTAT
1 ATTACATTACTAAAA--TAT
*
7495011 AACTTACATTACTTAAATAT
1 -A-TTACATTACTAAAATAT
7495031 ATTACATTACTTAAAAT
1 ATTACATTAC-TAAAAT
7495048 TTATATATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
17 13 0.21
18 25 0.40
19 9 0.14
20 4 0.06
21 4 0.06
22 8 0.13
ACGTcount: A:0.45, C:0.12, G:0.01, T:0.42
Consensus pattern (18 bp):
ATTACATTACTAAAATAT
Found at i:7495660 original size:9 final size:9
Alignment explanation
Indices: 7495642--7496194 Score: 179
Period size: 9 Copynumber: 63.8 Consensus size: 9
7495632 TAATAAATAA
*
7495642 AACTTGCAT
1 AACTTACAT
7495651 AACTTACAT
1 AACTTACAT
*
7495660 AA-TAACATAAT
1 AACTTAC---AT
7495671 AACTTACAT
1 AACTTACAT
*
7495680 AA--TACAC
1 AACTTACAT
7495687 AACTTACAT
1 AACTTACAT
*
7495696 AACTTAAAT
1 AACTTACAT
7495705 AACTTACAT
1 AACTTACAT
*
7495714 -A-GTACAT
1 AACTTACAT
**
7495721 AACTTTGAT
1 AACTTACAT
*
7495730 AACTAACAT
1 AACTTACAT
* *
7495739 TA--TACAC
1 AACTTACAT
7495746 AACTTACAT
1 AACTTACAT
7495755 AACTTACAT
1 AACTTACAT
*
7495764 AACTTAAAT
1 AACTTACAT
7495773 AACTTACAT
1 AACTTACAT
7495782 AA--TACAT
1 AACTTACAT
7495789 AACTT-CGAT
1 AACTTAC-AT
*
7495798 AACTAACAT
1 AACTTACAT
* *
7495807 TA--TACAC
1 AACTTACAT
7495814 AACTTACAT
1 AACTTACAT
7495823 AA--TACAT
1 AACTTACAT
** *
7495830 TTCTTGCAT
1 AACTTACAT
7495839 AACTTACAT
1 AACTTACAT
* *
7495848 TA--TACAC
1 AACTTACAT
7495855 AACTTA-ATT
1 AACTTACA-T
*
7495864 AATATTATACAT
1 -A-ACT-TACAT
7495876 AACTTACAT
1 AACTTACAT
*
7495885 -A-GTACAT
1 AACTTACAT
*
7495892 AACTAACAT
1 AACTTACAT
*
7495901 -A-GTACAT
1 AACTTACAT
*
7495908 AACATACAT
1 AACTTACAT
7495917 AA--TACAT
1 AACTTACAT
*
7495924 AA--TACAC
1 AACTTACAT
7495931 AACTTA-ATT
1 AACTTACA-T
*
7495940 AAAATTATACAT
1 --AACT-TACAT
*
7495952 AACATACA-
1 AACTTACAT
*
7495960 AA-ATACAT
1 AACTTACAT
7495968 AA--TACAT
1 AACTTACAT
7495975 AACTTACAT
1 AACTTACAT
*
7495984 AAATTACAT
1 AACTTACAT
*
7495993 AAATTACAT
1 AACTTACAT
*
7496002 AA--TACAC
1 AACTTACAT
7496009 AACTTA-ATT
1 AACTTACA-T
*
7496018 AATATTATACAT
1 -A-ACT-TACAT
7496030 AACTTA-ATT
1 AACTTACA-T
*
7496039 AATATTATACAT
1 -A-ACT-TACAT
7496051 AACTTA-ATT
1 AACTTACA-T
*
7496060 AATATTATACAT
1 -A-ACT-TACAT
*
7496072 AACATACAT
1 AACTTACAT
7496081 AA--TACAT
1 AACTTACAT
7496088 AACTTACAT
1 AACTTACAT
7496097 AACTTACAT
1 AACTTACAT
* *
7496106 -A-GTACAC
1 AACTTACAT
*
7496113 AACTAACAT
1 AACTTACAT
*
7496122 AA--TACAC
1 AACTTACAT
7496129 AACTTACAT
1 AACTTACAT
* *
7496138 AGCTTACAG
1 AACTTACAT
7496147 AA--TACAT
1 AACTTACAT
7496154 AACTTACAT
1 AACTTACAT
*
7496163 AACTTATAT
1 AACTTACAT
*
7496172 AA--TACAA
1 AACTTACAT
7496179 AACTTACAT
1 AACTTACAT
*
7496188 AATTTAC
1 AACTTAC
7496195 CTAATACATA
Statistics
Matches: 401, Mismatches: 77, Indels: 132
0.66 0.13 0.22
Matches are distributed among these distances:
7 103 0.26
8 21 0.05
9 221 0.55
10 14 0.03
11 19 0.05
12 18 0.04
13 5 0.01
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:7495699 original size:25 final size:25
Alignment explanation
Indices: 7495642--7495824 Score: 116
Period size: 25 Copynumber: 7.4 Consensus size: 25
7495632 TAATAAATAA
*
7495642 AACTTGCATAACTTACATAATA-AC
1 AACTTACATAACTTACATAATACAC
7495666 -A--TA-ATAACTTACATAATACAC
1 AACTTACATAACTTACATAATACAC
*
7495687 AACTTACATAACTTAAATAACTTACA-
1 AACTTACATAACTTACATAA--TACAC
* * **
7495713 TA-GTACATAACTTTGATAACTA-AC
1 AACTTACATAACTTACATAA-TACAC
* * *
7495737 -ATTATACACAACTTACATAACTTACAT
1 AACT-TACATAACTTACATAA--TACAC
* *
7495764 AACTTAAATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACAC
* *
7495789 AACTT-CGATAACTAACATTATACAC
1 AACTTAC-ATAACTTACATAATACAC
7495814 AACTTACATAA
1 AACTTACATAA
7495825 TACATTTCTT
Statistics
Matches: 124, Mismatches: 20, Indels: 29
0.72 0.12 0.17
Matches are distributed among these distances:
20 15 0.12
21 3 0.02
22 1 0.01
23 3 0.02
24 4 0.03
25 73 0.59
26 4 0.03
27 19 0.15
28 2 0.02
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.31
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAC
Found at i:7495711 original size:34 final size:34
Alignment explanation
Indices: 7495668--7495937 Score: 154
Period size: 34 Copynumber: 8.0 Consensus size: 34
7495658 ATAATAACAT
*
7495668 AATAACTTACATAATACACAACTTACATAACTTA
1 AATAACTTACATAATACATAACTTACATAACTTA
* **
7495702 AATAACTTACATAGTACATAACTTTGATAAC-TA
1 AATAACTTACATAATACATAACTTACATAACTTA
* *
7495735 ACATTA--TACACAACTTACATAACTTACATAACTTA
1 A-ATAACTTACATAA--TACATAACTTACATAACTTA
7495770 AATAACTTACATAATACATAACTT-CGATAAC-TA
1 AATAACTTACATAATACATAACTTAC-ATAACTTA
* * ** *
7495803 ACATTA--TACACAACTTACATAA--TACATTTCTTG
1 A-ATAACTTACATAA--TACATAACTTACATAACTTA
* * * *
7495836 CATAACTTACATTATACACAACTTA-ATTAATATTA
1 AATAACTTACATAATACATAACTTACA-TAA-CTTA
* * *
7495871 TACATAACTTACATAGTACATAACTAACAT-A-GTA
1 -A-ATAACTTACATAATACATAACTTACATAACTTA
* * *
7495905 CATAACATACATAATACATAA--TACACAACTTA
1 AATAACTTACATAATACATAACTTACATAACTTA
7495937 A
1 A
7495938 TTAAAATTAT
Statistics
Matches: 175, Mismatches: 38, Indels: 48
0.67 0.15 0.18
Matches are distributed among these distances:
30 3 0.02
31 1 0.01
32 44 0.25
33 10 0.06
34 83 0.47
35 5 0.03
36 7 0.04
37 21 0.12
38 1 0.01
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.31
Consensus pattern (34 bp):
AATAACTTACATAATACATAACTTACATAACTTA
Found at i:7495762 original size:68 final size:68
Alignment explanation
Indices: 7495682--7495859 Score: 261
Period size: 68 Copynumber: 2.6 Consensus size: 68
7495672 ACTTACATAA
* * *
7495682 TACACAACTTACATAACTTAAATAACTTACATAGTACATAACTTTGATAACTAACATTATACACA
1 TACATAACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACA
7495747 ACT
66 ACT
7495750 TACATAACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACA
1 TACATAACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACA
7495815 ACT
66 ACT
** ** * *
7495818 TACATAA--TACATTTCTTGCATAACTTACATTATACACAACTT
1 TACATAACTTACATAACTTAAATAACTTACATAATACATAACTT
7495860 AATTAATATT
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
66 29 0.29
68 72 0.71
ACGTcount: A:0.44, C:0.21, G:0.02, T:0.33
Consensus pattern (68 bp):
TACATAACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACA
ACT
Found at i:7495768 original size:43 final size:43
Alignment explanation
Indices: 7495716--7495806 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
7495706 ACTTACATAG
** *
7495716 TACATAACTTTGATAACTAACATTATACACAACTTAC-ATAACT
1 TACATAACTTAAATAACTAACATAATACACAACTT-CGATAACT
* *
7495759 TACATAACTTAAATAACTTACATAATACATAACTTCGATAACT
1 TACATAACTTAAATAACTAACATAATACACAACTTCGATAACT
*
7495802 AACAT
1 TACAT
7495807 TATACACAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 40 0.98
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (43 bp):
TACATAACTTAAATAACTAACATAATACACAACTTCGATAACT
Found at i:7495792 original size:16 final size:16
Alignment explanation
Indices: 7495648--7496190 Score: 140
Period size: 16 Copynumber: 32.9 Consensus size: 16
7495638 ATAAAACTTG
7495648 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
7495665 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
*
7495684 CACAACTTACATAACTTA
1 CATAACTTACATAA--TA
* *
7495702 AATAACTTACATAGTA
1 CATAACTTACATAATA
**
7495718 CATAACTTTGATAACTAA
1 CATAACTTACATAA-T-A
* *
7495736 CATTA--TACACAACTTA
1 CATAACTTACATAA--TA
7495752 CATAACTTACATAACTTA
1 CATAACTTACATAA--TA
*
7495770 AATAACTTACATAATA
1 CATAACTTACATAATA
7495786 CATAACTT-CGAT-A-A
1 CATAACTTAC-ATAATA
*
7495800 C-T-A---ACATTATA
1 CATAACTTACATAATA
*
7495811 CACAACTTACATAATA
1 CATAACTTACATAATA
*
7495827 CAT---TT-C-T--TG
1 CATAACTTACATAATA
*
7495836 CATAACTTACATTATA
1 CATAACTTACATAATA
* *
7495852 CACAACTTAATTAATATTATA
1 CATAACTT-A--CATA--ATA
*
7495873 CATAACTTACATAGTA
1 CATAACTTACATAATA
* *
7495889 CATAACTAACATAGTA
1 CATAACTTACATAATA
*
7495905 CATAACATACATAATA
1 CATAACTTACATAATA
*
7495921 CATAA--TACACAACTTA
1 CATAACTTACATAA--TA
*
7495937 -ATTAAAATTATACATAACATA
1 CA-T--AACT-TACAT-A-ATA
*
7495958 CA-AA-ATACATAATA
1 CATAACTTACATAATA
7495972 CATAACTTACATAAATTA
1 CATAACTTACAT-AA-TA
*
7495990 CATAAATTACATAATA
1 CATAACTTACATAATA
* *
7496006 CACAACTTAATTAATATTATA
1 CATAACTT-A--CATA--ATA
*
7496027 CATAACTTAATTAATATTATA
1 CATAACTT-A--CATA--ATA
7496048 CATAACTTA-AT--TA
1 CATAACTTACATAATA
*
7496061 -AT-ATTATACATAACATA
1 CATAACT-TACAT-A-ATA
7496078 CATAA--TACATAACTTA
1 CATAACTTACATAA--TA
*
7496094 CATAACTTACATAGTA
1 CATAACTTACATAATA
* *
7496110 CACAACTAACATAATA
1 CATAACTTACATAATA
* *
7496126 CACAACTTACATAGCTTA
1 CATAACTTACATA--ATA
*
7496144 CAGAA--TACATAACTTA
1 CATAACTTACATAA--TA
*
7496160 CATAACTTATATAATA
1 CATAACTTACATAATA
*
7496176 CAAAACTTACATAAT
1 CATAACTTACATAAT
7496191 TTACCTAATA
Statistics
Matches: 403, Mismatches: 54, Indels: 139
0.68 0.09 0.23
Matches are distributed among these distances:
9 6 0.01
10 2 0.00
11 5 0.01
12 8 0.02
13 9 0.02
14 15 0.04
15 7 0.02
16 183 0.45
17 13 0.03
18 81 0.20
19 8 0.02
20 16 0.04
21 47 0.12
22 2 0.00
23 1 0.00
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.32
Consensus pattern (16 bp):
CATAACTTACATAATA
Done.