Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 26 of 216
Found at i:7495829 original size:41 final size:41
Alignment explanation
Indices: 7495773--7495860 Score: 133
Period size: 41 Copynumber: 2.1 Consensus size: 41
7495763 TAACTTAAAT
7495773 AACTTACATAATACATAACTT-CGATAACTAACATTATACAC
1 AACTTACATAATACATAACTTGC-ATAACTAACATTATACAC
** *
7495814 AACTTACATAATACATTTCTTGCATAACTTACATTATACAC
1 AACTTACATAATACATAACTTGCATAACTAACATTATACAC
7495855 AACTTA
1 AACTTA
7495861 ATTAATATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 42 0.98
42 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (41 bp):
AACTTACATAATACATAACTTGCATAACTAACATTATACAC
Found at i:7495940 original size:76 final size:78
Alignment explanation
Indices: 7495836--7496035 Score: 275
Period size: 76 Copynumber: 2.6 Consensus size: 78
7495826 ACATTTCTTG
* * * *
7495836 CATAACTTACATTATACACAACTTAATTAATATTATACATAACTTACATAGTACATAACTAACAT
1 CATAAATTACATAATACACAACTTAATTAATATTATACATAACTTACAAAATACATAA-T-ACAT
7495901 -A-GTACATAACA-TA
64 AACGTACATAA-ATTA
* *
7495914 CAT-AA-TACATAATACACAACTTAATTAAAATTATACATAACATACAAAATACATAATACATAA
1 CATAAATTACATAATACACAACTTAATTAATATTATACATAACTTACAAAATACATAATACATAA
*
7495977 CTTACATAAATTA
66 CGTACATAAATTA
7495990 CATAAATTACATAATACACAACTTAATTAATATTATACATAACTTA
1 CATAAATTACATAATACACAACTTAATTAATATTATACATAACTTA
7496036 ATTAATATTA
Statistics
Matches: 108, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
74 4 0.04
75 3 0.03
76 58 0.54
77 3 0.03
78 40 0.37
ACGTcount: A:0.51, C:0.17, G:0.01, T:0.32
Consensus pattern (78 bp):
CATAAATTACATAATACACAACTTAATTAATATTATACATAACTTACAAAATACATAATACATAA
CGTACATAAATTA
Found at i:7496084 original size:21 final size:21
Alignment explanation
Indices: 7496003--7496074 Score: 135
Period size: 21 Copynumber: 3.4 Consensus size: 21
7495993 AAATTACATA
*
7496003 ATACACAACTTAATTAATATT
1 ATACATAACTTAATTAATATT
7496024 ATACATAACTTAATTAATATT
1 ATACATAACTTAATTAATATT
7496045 ATACATAACTTAATTAATATT
1 ATACATAACTTAATTAATATT
7496066 ATACATAAC
1 ATACATAAC
7496075 ATACATAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (21 bp):
ATACATAACTTAATTAATATT
Found at i:7496095 original size:25 final size:25
Alignment explanation
Indices: 7496067--7496205 Score: 92
Period size: 25 Copynumber: 5.6 Consensus size: 25
7496057 ATTAATATTA
7496067 TACATAACATACATAA-TACATAACT
1 TACATAA-ATACATAACTACATAACT
* * *
7496092 TACATAACTTACAT-AGTACACAACT
1 TACATAA-ATACATAACTACATAACT
* * *
7496117 AACAT-AATACACAACTTACATAGCT
1 TACATAAATACATAAC-TACATAACT
*
7496142 TACA-GAATACATAACTTACATAACT
1 TACATAAATACATAAC-TACATAACT
* * *
7496167 TATAT-AATACAAAACTTACATAATT
1 TACATAAATACATAAC-TACATAACT
*
7496192 TACCT-AATACATAA
1 TACATAAATACATAA
7496206 ATATATATCA
Statistics
Matches: 92, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
23 4 0.04
24 3 0.03
25 85 0.92
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (25 bp):
TACATAAATACATAACTACATAACT
Found at i:7501714 original size:21 final size:21
Alignment explanation
Indices: 7501643--7501710 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
7501633 CTACAACTTA
* * *
7501643 AAGCAAAGGCGGCAACGAGGG
1 AAGCAAAGGCTGCAGCGAGAG
** *
7501664 AAGCAAAGGCTATAGCAAGAG
1 AAGCAAAGGCTGCAGCGAGAG
*
7501685 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAAAGGCTGCAGCGAGAG
7501706 AAGCA
1 AAGCA
7501711 GAGGTTCAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.41, C:0.18, G:0.37, T:0.04
Consensus pattern (21 bp):
AAGCAAAGGCTGCAGCGAGAG
Found at i:7502136 original size:42 final size:42
Alignment explanation
Indices: 7502058--7502369 Score: 269
Period size: 42 Copynumber: 7.4 Consensus size: 42
7502048 AATCCCAAAA
* *
7502058 TTAGTGGCGTTTTTTATAAAAGCGCCGCTAAAGAACATCACTT
1 TTAGTGGCGTTTTTTA-CAAAGCGCCGCTAAAGAACATGACTT
*
7502101 TTAGTGGC-TATTTTTACAAAGAGCCGCTAAAGAACATGA-TCT
1 TTAGTGGCGT-TTTTTACAAAGCGCCGCTAAAGAACATGACT-T
* * ***
7502143 TTAGAGGTGTCTTTTTTTTAAGCGCCGCTAAAGAACATGA-TCT
1 TTAGTGGCGT-TTTTTACAAAGCGCCGCTAAAGAACATGACT-T
*
7502186 TTAGTGGCGTTTTTTACTAAGCGCCGCTAAAGAACATGA-TCT
1 TTAGTGGCGTTTTTTACAAAGCGCCGCTAAAGAACATGACT-T
* ** * *
7502228 TTAGCGGCGTCTTTTT-TTAAGCGCTGCTAAAGAACACGA-TCT
1 TTAGTGGCGT-TTTTTACAAAGCGCCGCTAAAGAACATGACT-T
* * * * *
7502270 TTAGTGGCATTTTTTTCTAAGTGCCGCTAAAAAACATGA-TCT
1 TTAGTGGCGTTTTTTACAAAGCGCCGCTAAAGAACATGACT-T
* ** *
7502312 TTAGCGGCGTTTTTTTATTAAGCGCCGCTAAAGAACATGACCT
1 TTAGTGGCG-TTTTTTACAAAGCGCCGCTAAAGAACATGACTT
*
7502355 TTAGCGGCGTTTTTT
1 TTAGTGGCGTTTTTT
7502370 CTGTAAATGC
Statistics
Matches: 230, Mismatches: 32, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
41 6 0.03
42 132 0.57
43 92 0.40
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (42 bp):
TTAGTGGCGTTTTTTACAAAGCGCCGCTAAAGAACATGACTT
Found at i:7502220 original size:85 final size:85
Alignment explanation
Indices: 7502077--7502369 Score: 414
Period size: 85 Copynumber: 3.5 Consensus size: 85
7502067 TTTTTTATAA
* *
7502077 AAGCGCCGCTAAAGAACATCA-CTTTTAGTGGC-TATTTTTACAAAGAGCCGCTAAAGAACATGA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGTGGCGT-TTTTTACTAAGAGCCGCTAAAGAACATGA
* *
7502140 TCTTTAGAGGTGTCTTTTTTTT
64 TCTTTAGCGGCGTCTTTTTTTT
*
7502162 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTACTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTACTAAGAGCCGCTAAAGAACATGATC
7502227 TTTAGCGGCGTC-TTTTTTT
66 TTTAGCGGCGTCTTTTTTTT
* * * * * *
7502246 AAGCGCTGCTAAAGAACACGATCTTTAGTGGCATTTTTTTCTAAGTGCCGCTAAAAAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTACTAAGAGCCGCTAAAGAACATGATC
7502311 TTTAGCGGCGT-TTTTTTATT
66 TTTAGCGGCGTCTTTTTT-TT
* *
7502331 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTT
7502370 CTGTAAATGC
Statistics
Matches: 188, Mismatches: 16, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
84 82 0.44
85 104 0.55
86 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (85 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTACTAAGAGCCGCTAAAGAACATGATC
TTTAGCGGCGTCTTTTTTTT
Found at i:7502285 original size:127 final size:124
Alignment explanation
Indices: 7502058--7502369 Score: 376
Period size: 127 Copynumber: 2.4 Consensus size: 124
7502048 AATCCCAAAA
* *
7502058 TTAGTGGCGTTTTTTATAAAAGCGCCGCTAAAGAACATCACTTTTAGTGGC-TATTTTTACAAAG
1 TTAGTGGCGTTTTTTAT--AAGCGCCGCTAAAGAACATGAC-TTTAGCGGCGT-TTTTTACAAAG
* ** * *
7502122 AGCCGCTAAAGAACATGATCTTTAGAGGTGTCTTTTTTTTAAGCGCCGCTAAAGAACATGATCT
62 AGCCGCTAAAGAACACGATCTTTAGAGG-CACTTTTTTCTAAGCGCCGCTAAAAAACATGATCT
** *
7502186 TTAGTGGCGTTTTTTACTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTTT-TTAAGC
1 TTAGTGGCGTTTTTTA-TAAGCGCCGCTAAAGAACATGA-CTTTAGCGGCGT-TTTTTACAAAGA
* * * *
7502250 GCTGCTAAAGAACACGATCTTTAGTGGCATTTTTTTCTAAGTGCCGCTAAAAAACATGATCT
63 GCCGCTAAAGAACACGATCTTTAGAGGCACTTTTTTCTAAGCGCCGCTAAAAAACATGATCT
*
7502312 TTAGCGGCGTTTTTTTATTAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTT
1 TTAGTGGCG-TTTTTTA-TAAGCGCCGCTAAAGAACATGA-CTTTAGCGGCGTTTTTT
7502370 CTGTAAATGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
126 42 0.26
127 96 0.59
128 23 0.14
129 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (124 bp):
TTAGTGGCGTTTTTTATAAGCGCCGCTAAAGAACATGACTTTAGCGGCGTTTTTTACAAAGAGCC
GCTAAAGAACACGATCTTTAGAGGCACTTTTTTCTAAGCGCCGCTAAAAAACATGATCT
Found at i:7505122 original size:18 final size:18
Alignment explanation
Indices: 7505101--7505157 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
7505091 AGGCCACATA
*
7505101 CAGAAGAGGTTATCGTGG
1 CAGAGGAGGTTATCGTGG
*
7505119 CAGAGGTGGTTATCGTGG
1 CAGAGGAGGTTATCGTGG
*
7505137 TAGAGGAGG---TCGTGG
1 CAGAGGAGGTTATCGTGG
7505152 CAGAGG
1 CAGAGG
7505158 TAGAAGTGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 11 0.32
18 23 0.68
ACGTcount: A:0.23, C:0.11, G:0.46, T:0.21
Consensus pattern (18 bp):
CAGAGGAGGTTATCGTGG
Found at i:7508554 original size:18 final size:18
Alignment explanation
Indices: 7508500--7508546 Score: 78
Period size: 18 Copynumber: 2.6 Consensus size: 18
7508490 CTGTTTTTGT
7508500 TATGATTTTCTGTTGAGA
1 TATGATTTTCTGTTGAGA
7508518 TATGA-TTTCTTGTTGAGA
1 TATGATTTTC-TGTTGAGA
7508536 TATGATTTTCT
1 TATGATTTTCT
7508547 ATTAAGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.15
18 19 0.70
19 4 0.15
ACGTcount: A:0.21, C:0.06, G:0.19, T:0.53
Consensus pattern (18 bp):
TATGATTTTCTGTTGAGA
Found at i:7512706 original size:18 final size:19
Alignment explanation
Indices: 7512683--7512726 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
7512673 AGCAACTTGA
*
7512683 GTTGAGCTTGCA-CTTTTG
1 GTTGAGCTTGCAGCTTTAG
7512701 GTTGAGCTTGCAGCTTTAG
1 GTTGAGCTTGCAGCTTTAG
7512720 G-TGAGCT
1 GTTGAGCT
7512727 CGCAAATGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.14, C:0.16, G:0.32, T:0.39
Consensus pattern (19 bp):
GTTGAGCTTGCAGCTTTAG
Found at i:7514119 original size:12 final size:12
Alignment explanation
Indices: 7514102--7514127 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7514092 CAAAACAGGC
7514102 TTTTAGCGGCGT
1 TTTTAGCGGCGT
7514114 TTTTAGCGGCGT
1 TTTTAGCGGCGT
7514126 TT
1 TT
7514128 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:7514395 original size:114 final size:113
Alignment explanation
Indices: 7514196--7514523 Score: 529
Period size: 113 Copynumber: 2.9 Consensus size: 113
7514186 AAAAAAAGCA
*
7514196 TTAGCGGCGTTTTT-GAGAAAGCGCCGC-AAAAAACCTAAGCCCAATGACGCCGTTTTCTGAGCT
1 TTAGCGGCGTTTTTGGA-AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
*
7514259 TTCAGAGATTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGCCCAGGGCT
65 TTCAGGGATTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATG-CCAGGGCT
* * *
7514309 TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCTAACGACGTCGTTTTCTGAACTT
1 TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
7514374 TCAGGGATTTAGTGGCGTTTTTGGTAAAGCGCCACTAATGCCAGGGCT
66 TCAGGGATTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGCCAGGGCT
7514422 TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
*
7514487 TCGGGGATTTAGCGGCGTTTTT--TAAAAGCGCCGCTAA
66 TCAGGGATTTAGCGGCGTTTTTGGT-AAAGCGCCGCTAA
7514524 AAATATTTTA
Statistics
Matches: 199, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
111 1 0.01
112 12 0.06
113 114 0.57
114 72 0.36
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCAGGGATTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGCCAGGGCT
Found at i:7514788 original size:15 final size:15
Alignment explanation
Indices: 7514770--7514800 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7514760 CATATATTAA
7514770 GGTTTAGGGAGTATG
1 GGTTTAGGGAGTATG
*
7514785 GGTTTAGGGATTATG
1 GGTTTAGGGAGTATG
7514800 G
1 G
7514801 ATTAGGGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.35
Consensus pattern (15 bp):
GGTTTAGGGAGTATG
Found at i:7515107 original size:21 final size:20
Alignment explanation
Indices: 7515073--7515113 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
7515063 TTATGAATTA
*
7515073 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
7515093 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
7515114 AGGGGTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:7515849 original size:71 final size:70
Alignment explanation
Indices: 7515712--7515872 Score: 189
Period size: 71 Copynumber: 2.3 Consensus size: 70
7515702 ATTTTATAAA
* * * * ** * * *
7515712 AAATCAATTTATAAAAAAAAAATTAGCATAGCAAAACGGTGTCATTTTGTTCAAAATGAAAGCAA
1 AAATCAATTTATAAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTCCTTAAAAACGAAACCAA
7515777 AAAAT
66 AAAAT
**
7515782 AAATCAATTTATATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTCCTATAAAAACG-CCCC
1 AAATCAATTTATA-AAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTCCT-TAAAAACGAAACC
7515846 AAAAAAT
64 AAAAAAT
*
7515853 AAATCAACTTATAAAAAAAA
1 AAATCAATTTATAAAAAAAA
7515873 TAAAAAATTG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
70 20 0.26
71 51 0.66
72 6 0.08
ACGTcount: A:0.53, C:0.13, G:0.09, T:0.24
Consensus pattern (70 bp):
AAATCAATTTATAAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTCCTTAAAAACGAAACCAA
AAAAT
Found at i:7516079 original size:114 final size:114
Alignment explanation
Indices: 7515959--7516187 Score: 458
Period size: 114 Copynumber: 2.0 Consensus size: 114
7515949 CCGCTAAAGG
7515959 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
1 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
7516024 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATT
66 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATT
7516073 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
1 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
7516138 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATT
66 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATT
7516187 T
1 T
7516188 TGCGGCGCTT
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 115 1.00
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (114 bp):
TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATT
Found at i:7516243 original size:146 final size:147
Alignment explanation
Indices: 7516073--7516424 Score: 661
Period size: 146 Copynumber: 2.4 Consensus size: 147
7516063 TGAAAAAATT
7516073 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
1 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
7516138 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATG-AAAAAATTTTGCGGCGCTTTATA
66 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTTGCGGCGCTTTATA
7516202 GGAAGCGCCGCTAAAGG
131 GGAAGCGCCGCTAAAGG
* * *
7516219 TAAGCAATAGCGACATTTTTTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
1 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
7516284 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTTGCGGCGCTTTATA
66 AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTTGCGGCGCTTTATA
7516349 GGAAGCGCCGCTAAAGG
131 GGAAGCGCCGCTAAAGG
*
7516366 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
1 TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAA
7516425 TTTCCCAAAT
Statistics
Matches: 198, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
146 103 0.52
147 95 0.48
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.25
Consensus pattern (147 bp):
TAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAA
AATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTTGCGGCGCTTTATA
GGAAGCGCCGCTAAAGG
Found at i:7516293 original size:260 final size:261
Alignment explanation
Indices: 7515825--7516330 Score: 942
Period size: 260 Copynumber: 1.9 Consensus size: 261
7515815 AAAACGGCGT
7515825 CGTTTCCTATAAAAACGCCCCAAAAAATAAATCAACTTATAAAAAAAATAAAAAATTGTTAGAAT
1 CGTTTCCTATAAAAACGCCCCAAAAAATAAATCAACTTATAAAAAAAATAAAAAATTGTTAGAAT
7515890 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
66 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
* *
7515955 AAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAAT
131 AAGGTAAGCAATAGCGACATTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAAT
7516020 AAAAAATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTAAGCAATAGCG
196 AAAAAATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTAAGCAATAGCG
7516085 G
261 G
* *
7516086 CGTTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTAT-AAAAAAATAAAAAATTGTTAGAAT
1 CGTTTCCTATAAAAACGCCCCAAAAAATAAATCAACTTATAAAAAAAATAAAAAATTGTTAGAAT
* *
7516150 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAGGAAGCGCCGCTA
66 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
*
7516215 AAGGTAAGCAATAGCGACATTTTTTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAAT
131 AAGGTAAGCAATAGCGACATTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAAT
7516280 AAAAAATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAA
196 AAAAAATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAA
7516331 ATTTTGCGGC
Statistics
Matches: 238, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
260 200 0.84
261 38 0.16
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.25
Consensus pattern (261 bp):
CGTTTCCTATAAAAACGCCCCAAAAAATAAATCAACTTATAAAAAAAATAAAAAATTGTTAGAAT
AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTA
AAGGTAAGCAATAGCGACATTTTCTATAAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAAT
AAAAAATTGTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTAAGCAATAGCG
G
Found at i:7517023 original size:14 final size:15
Alignment explanation
Indices: 7516996--7517027 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
7516986 AGTTTTATAA
7516996 ATTATGGAATTAGGG
1 ATTATGGAATTAGGG
7517011 ATTATGG-ATTAGGG
1 ATTATGGAATTAGGG
7517025 ATT
1 ATT
7517028 CTAGTTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (15 bp):
ATTATGGAATTAGGG
Found at i:7517069 original size:14 final size:14
Alignment explanation
Indices: 7517050--7517126 Score: 68
Period size: 14 Copynumber: 5.6 Consensus size: 14
7517040 TTAATGTGAT
* *
7517050 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
7517064 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
7517078 TTAAGGGTTA--GG
1 TTAAGGGTTAGGGG
* **
7517090 TTAGGGGTTAGATG
1 TTAAGGGTTAGGGG
* *
7517104 TTAAGAGTTAGGGA
1 TTAAGGGTTAGGGG
*
7517118 TTTAGGGTT
1 TTAAGGGTT
7517127 TAGAAATTCG
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
12 11 0.22
14 39 0.78
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.36
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:7517097 original size:26 final size:26
Alignment explanation
Indices: 7517062--7517115 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
7517052 AAGGTTTATG
* *
7517062 GGTTAAGGGTTAGGGGTTAAGGGTTA
1 GGTTAAGGGTTAGAGGTTAAGAGTTA
* *
7517088 GGTTAGGGGTTAGATGTTAAGAGTTA
1 GGTTAAGGGTTAGAGGTTAAGAGTTA
7517114 GG
1 GG
7517116 GATTTAGGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.31
Consensus pattern (26 bp):
GGTTAAGGGTTAGAGGTTAAGAGTTA
Found at i:7517106 original size:19 final size:20
Alignment explanation
Indices: 7517061--7517126 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
7517051 TAAGGTTTAT
7517061 GGGTTAAGGGTTAGGGGTTAA
1 GGGTTAA-GGTTAGGGGTTAA
7517082 GGGTT-AGGTTAGGGGTT-A
1 GGGTTAAGGTTAGGGGTTAA
* * *
7517100 GATGTTAAGAGTTAGGGATTTA
1 G-GGTTAAG-GTTAGGGGTTAA
7517122 GGGTT
1 GGGTT
7517127 TAGAAATTCG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 2 0.05
19 14 0.37
20 3 0.08
21 17 0.45
22 2 0.05
ACGTcount: A:0.23, C:0.00, G:0.44, T:0.33
Consensus pattern (20 bp):
GGGTTAAGGTTAGGGGTTAA
Found at i:7517440 original size:88 final size:89
Alignment explanation
Indices: 7517278--7517440 Score: 242
Period size: 87 Copynumber: 1.8 Consensus size: 89
7517268 TAAAGTTTAA
* * *
7517278 GGGTTAGGGATTCGTGGTCAGGTTTCAGGTTTAGGGTTTAGATTAATTAGTACTTTTTAATTATA
1 GGGTTAGGGATTCGGGGTCAGGGTTCAGGTTTAGGATTTAGATTAATTAGTACTTTTTAATTATA
7517343 TATTAAATAAAGTTTAGGGGTTAG
66 TATTAAATAAAGTTTAGGGGTTAG
* *
7517367 GGGTTAGGGATTTGGGGTC-GGGTT-AGGGTTTA-GATTTGGATTAATTAGTACTTTTTAATTTA
1 GGGTTAGGGATTCGGGGTCAGGGTTCA-GGTTTAGGATTTAGATTAATTAGTACTTTTTAA-TTA
7517429 TATATTAAATAA
64 TATATTAAATAA
7517441 GTTCTTTATA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
87 25 0.37
88 25 0.37
89 17 0.25
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.42
Consensus pattern (89 bp):
GGGTTAGGGATTCGGGGTCAGGGTTCAGGTTTAGGATTTAGATTAATTAGTACTTTTTAATTATA
TATTAAATAAAGTTTAGGGGTTAG
Found at i:7517443 original size:87 final size:82
Alignment explanation
Indices: 7517194--7517440 Score: 272
Period size: 83 Copynumber: 3.0 Consensus size: 82
7517184 ATATATTAAA
* * * *
7517194 TAAGGTTTAGGGATT-AGGATCA-GGTTATGGTTTAGGGTTTAGATTAATTATTA-TTATTTAAT
1 TAAGGGTTAGGGATTCGGGGTCAGGGTTA-GGTTTAGGGTTTAGATTAATTAGTACTT-TTTAAT
7517256 TTATATATTAAATAAAGTT
64 TTATATATTAAATAAAGTT
* *
7517275 TAAGGGTTAGGGATTCGTGGTCAGGTTTCAGGTTTAGGGTTTAGATTAATTAGTACTTTTTAA-T
1 TAAGGGTTAGGGATTCGGGGTCAGGGTT-AGGTTTAGGGTTTAGATTAATTAGTACTTTTTAATT
7517339 TATATATTAAATAAAGTT
65 TATATATTAAATAAAGTT
* * *
7517357 TAGGGGTTAGGGGTTAGGGATTTGGGGTC-GGGTTAGGGTTTA-GATTTGGATTAATTAGTACTT
1 TA------A-GGGTTAGGGATTCGGGGTCAGGGTTA-GGTTTAGGGTTTAGATTAATTAGTACTT
7517420 TTTAATTTATATATTAAATAA
58 TTTAATTTATATATTAAATAA
7517441 GTTCTTTATA
Statistics
Matches: 142, Mismatches: 11, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
81 14 0.10
82 25 0.18
83 32 0.23
84 3 0.02
87 25 0.18
88 26 0.18
89 17 0.12
ACGTcount: A:0.30, C:0.03, G:0.24, T:0.43
Consensus pattern (82 bp):
TAAGGGTTAGGGATTCGGGGTCAGGGTTAGGTTTAGGGTTTAGATTAATTAGTACTTTTTAATTT
ATATATTAAATAAAGTT
Found at i:7517542 original size:21 final size:21
Alignment explanation
Indices: 7517489--7517542 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
7517479 TAAAGATTAT
7517489 TAATTTAAAA-TTGATATGCAA
1 TAATTTAAAATTTGATAT-CAA
*
7517510 T-ATATAATAATTTGAATAT-AA
1 TAATTTAA-AATTTG-ATATCAA
7517531 TAATTTAAAATT
1 TAATTTAAAATT
7517543 GTAAAATTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.19
21 10 0.37
22 8 0.30
23 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATTTAAAATTTGATATCAA
Found at i:7517560 original size:10 final size:9
Alignment explanation
Indices: 7517537--7517576 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
7517527 ATAATAATTT
7517537 AAAATTGT-
1 AAAATTGTA
7517545 AAAATTGTAA
1 AAAATTGT-A
7517555 AAAATTGTA
1 AAAATTGTA
*
7517564 AAAATTATA
1 AAAATTGTA
7517573 AAAA
1 AAAA
7517577 AATAAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 8 0.28
9 13 0.45
10 8 0.28
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (9 bp):
AAAATTGTA
Found at i:7517560 original size:18 final size:19
Alignment explanation
Indices: 7517537--7517577 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7517527 ATAATAATTT
*
7517537 AAAATTGT-AAAATTGTAA
1 AAAATTGTAAAAATTATAA
7517555 AAAATTGTAAAAATTATAA
1 AAAATTGTAAAAATTATAA
7517574 AAAA
1 AAAA
7517578 ATAAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (19 bp):
AAAATTGTAAAAATTATAA
Found at i:7517577 original size:11 final size:10
Alignment explanation
Indices: 7517563--7517615 Score: 56
Period size: 10 Copynumber: 5.2 Consensus size: 10
7517553 AAAAAATTGT
7517563 AAAAATTATAA
1 AAAAATTA-AA
*
7517574 AAAAATAAAA
1 AAAAATTAAA
7517584 ATAAAATT-AA
1 A-AAAATTAAA
7517594 AAAAATTAAA
1 AAAAATTAAA
7517604 AAGAAA-TAAA
1 AA-AAATTAAA
7517614 AA
1 AA
7517616 CACTAAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
9 6 0.16
10 16 0.43
11 15 0.41
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (10 bp):
AAAAATTAAA
Found at i:7517610 original size:20 final size:21
Alignment explanation
Indices: 7517564--7517605 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7517554 AAAAATTGTA
7517564 AAAATTATAAAAAAATAAAAAT
1 AAAATTA-AAAAAAATAAAAAT
*
7517586 AAAATTAAAAAAATTAAAAA
1 AAAATTAAAAAAAATAAAAA
7517606 GAAATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (21 bp):
AAAATTAAAAAAAATAAAAAT
Found at i:7517615 original size:20 final size:20
Alignment explanation
Indices: 7517572--7517615 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
7517562 TAAAAATTAT
7517572 AAAAAAATAAAAATAAAATTA
1 AAAAAAATAAAAATAAAA-TA
* *
7517593 AAAAAATTAAAAA-GAAATA
1 AAAAAAATAAAAATAAAATA
7517612 AAAA
1 AAAA
7517616 CACTAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 3 0.14
21 12 0.57
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAAAAATAAAAATAAAATA
Found at i:7517682 original size:47 final size:48
Alignment explanation
Indices: 7517610--7517708 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 48
7517600 TAAAAAGAAA
** * *
7517610 TAAAAACACTAAAATTTTTATTTTTACCTAATTTTTATAAATACTACT
1 TAAAAACACTAAAATTGATAATTTTACCTAATTTTTATAAATACTACC
* *
7517658 TAAAAA-ACTAAAATTGATAATTTTATCTAATTTTTATAAATATTACC
1 TAAAAACACTAAAATTGATAATTTTACCTAATTTTTATAAATACTACC
7517705 TAAA
1 TAAA
7517709 CAAAATTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
47 39 0.87
48 6 0.13
ACGTcount: A:0.45, C:0.10, G:0.01, T:0.43
Consensus pattern (48 bp):
TAAAAACACTAAAATTGATAATTTTACCTAATTTTTATAAATACTACC
Found at i:7520351 original size:13 final size:13
Alignment explanation
Indices: 7520333--7520358 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7520323 TTATAAAATT
7520333 TTTACATTTTACA
1 TTTACATTTTACA
7520346 TTTACATTTTACA
1 TTTACATTTTACA
7520359 AAGCTTCAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTACATTTTACA
Found at i:7521223 original size:50 final size:50
Alignment explanation
Indices: 7521153--7521279 Score: 245
Period size: 50 Copynumber: 2.5 Consensus size: 50
7521143 CTAGATTGAG
7521153 GCTTATATGCAAAATGTGAGTTATGGATCTGGAGAAGGGAATGATAGGCT
1 GCTTATATGCAAAATGTGAGTTATGGATCTGGAGAAGGGAATGATAGGCT
7521203 GCTTATATGCAAAATGTGAGTTATGGATCTGGAGAAGGGAATGATAGGCT
1 GCTTATATGCAAAATGTGAGTTATGGATCTGGAGAAGGGAATGATAGGCT
*
7521253 GCTTCTATGCAAAATGTGAGTTATGGA
1 GCTTATATGCAAAATGTGAGTTATGGA
7521280 GTTGGTTTTC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 76 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (50 bp):
GCTTATATGCAAAATGTGAGTTATGGATCTGGAGAAGGGAATGATAGGCT
Found at i:7522805 original size:43 final size:43
Alignment explanation
Indices: 7522672--7522985 Score: 339
Period size: 43 Copynumber: 7.3 Consensus size: 43
7522662 TTTTTTATGA
* * * * *
7522672 TCTTTAGCGGCGTTTTTGGAAAAAGCGCCGCTAAAGGTTAGGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGT
* * * * * **
7522715 T-TTTAGCGGCATTTGTGGGAAAAGCGTCGTTAAAGAACCTAA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGT
* * * *
7522757 CCTTTAGTGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGT
*** * *
7522800 TCTTTAGCGGCGTTT-TTTAAAAAGGCGTCGTTAAAGATCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAA-GCGCCGCTAAAGATCATGT
*
7522843 TCTTTAGCGGTGTTTGT-GGAAAAGCGCCGCTAAAGATCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGT
* * * *
7522885 TCTTTAGCGGCGTTTGT-GAAAAATGTGCTGCTAAAGGTCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAA-GCGCCGCTAAAGATCATGT
*
7522928 TCTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGT
7522971 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
7522986 TTTCAAATAA
Statistics
Matches: 220, Mismatches: 46, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
42 72 0.33
43 143 0.65
44 5 0.02
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGT
Found at i:7522823 original size:85 final size:85
Alignment explanation
Indices: 7522672--7522987 Score: 368
Period size: 85 Copynumber: 3.7 Consensus size: 85
7522662 TTTTTTATGA
* * * * * * * *
7522672 TCTTTAGCGGCGTTTTTGGAAAAAGCGCCGCTAAAGGTTAGGTT-TTTAGCGGCATTTGTGGGAA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT-TTGAAA
* * **
7522736 AAGCGTCGTTAAAGAACCTAA
65 AAGCGTCGTTAAAGATCATGT
* * * * *
7522757 CCTTTAGTGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTTAAAA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTGAAAA
7522822 AGGCGTCGTTAAAGATCATGT
66 A-GCGTCGTTAAAGATCATGT
* *
7522843 TCTTTAGCGGTGTTTGT-GGAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGAAAA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTGAAAA
* * *
7522907 A-TGTGCTGCTAAAGGTCATGT
66 AGCGT-C-GTTAAAGATCATGT
*
7522928 TCTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTT
7522988 TCAAATAAAC
Statistics
Matches: 200, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
83 2 0.01
84 1 0.00
85 117 0.58
86 80 0.40
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (85 bp):
TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTGAAAA
AGCGTCGTTAAAGATCATGT
Found at i:7522867 original size:128 final size:128
Alignment explanation
Indices: 7522672--7522985 Score: 364
Period size: 128 Copynumber: 2.4 Consensus size: 128
7522662 TTTTTTATGA
* * * *
7522672 TCTTTAGCGGCGTTTTTGGAAAAAGCGCCGCTAAAGGTTAGGTT-TTTAGCGGCATTTGTGGGAA
1 TCTTTAGCGGCGTTTTT-GAAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAA
* * * * * *
7522736 AAGCGTCGTTAAAGAACCTAACCTTTAGTGGCGTTTTTGGGAAAA-GCGCCGCTAAAGGTCATGT
65 AAGCGCCGCTAAAGAACATAACCTTTAGCGGCGTTTGT-GAAAAATGCGCCGCTAAAGGTCATGT
* * * *
7522800 TCTTTAGCGGCGTTTTTTAAAAAGGCGTCGTTAAAGATCATGTTCTTTAGCGGTGTTTGT-GGAA
1 TCTTTAGCGGCGTTTTTGAAAAA-GCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAA
* *** * *
7522864 AAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGAAAAATGTGCTGCTAAAGGTCATGT
65 AAGCGCCGCTAAAGAACATAACCTTTAGCGGCGTTTGTGAAAAATGCGCCGCTAAAGGTCATGT
* **
7522928 TCTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT-TTGAAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
7522986 TTTCAAATAA
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
127 10 0.06
128 128 0.83
129 17 0.11
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (128 bp):
TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAAA
AGCGCCGCTAAAGAACATAACCTTTAGCGGCGTTTGTGAAAAATGCGCCGCTAAAGGTCATGT
Found at i:7523101 original size:22 final size:22
Alignment explanation
Indices: 7523073--7523138 Score: 114
Period size: 22 Copynumber: 3.0 Consensus size: 22
7523063 TAGCGACGCT
7523073 AAAAAACGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAGGCCTA
7523095 AAAAAACGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAGGCCTA
* *
7523117 AAAAAACACCGCTAAAAGCCTA
1 AAAAAACGCCGCTAAAGGCCTA
7523139 TTTTGGTGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.48, C:0.27, G:0.15, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAGGCCTA
Found at i:7528005 original size:16 final size:16
Alignment explanation
Indices: 7527986--7528021 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7527976 CGGCTTGCAA
*
7527986 TTTGATAGGCTCACAC
1 TTTGACAGGCTCACAC
*
7528002 TTTGACAGGCTCGCAC
1 TTTGACAGGCTCACAC
7528018 TTTG
1 TTTG
7528022 CTTACTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.33
Consensus pattern (16 bp):
TTTGACAGGCTCACAC
Found at i:7528219 original size:25 final size:25
Alignment explanation
Indices: 7528176--7528223 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7528166 ACCTTTTGAT
*
7528176 GAGCTCGCACCACTTGCTAAGCTCA
1 GAGCTCGCACCACTCGCTAAGCTCA
**
7528201 GAGCTCGCACTTCTCGCTAAGCT
1 GAGCTCGCACCACTCGCTAAGCT
7528224 TGTAGCTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.23
Consensus pattern (25 bp):
GAGCTCGCACCACTCGCTAAGCTCA
Found at i:7528248 original size:25 final size:27
Alignment explanation
Indices: 7528207--7528282 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 27
7528197 CTCAGAGCTC
* *
7528207 GCAC-TTCTCGCTAAGCTTGTAGCTTT
1 GCACATTCTTGCTGAGCTTGTAGCTTT
*
7528233 G-ACA-TCTTGCTGAGCTTGCAGC-TT
1 GCACATTCTTGCTGAGCTTGTAGCTTT
* * *
7528257 GCACATTTTTGCTGAGGTTATAGCTT
1 GCACATTCTTGCTGAGCTTGTAGCTT
7528283 ACACATTGGA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
24 3 0.08
25 20 0.51
26 15 0.38
27 1 0.03
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GCACATTCTTGCTGAGCTTGTAGCTTT
Found at i:7529759 original size:50 final size:49
Alignment explanation
Indices: 7529704--7529895 Score: 208
Period size: 50 Copynumber: 3.9 Consensus size: 49
7529694 CATTGAGATT
*
7529704 ATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGTGTTGGCATCGA
1 ATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGA
** * * *
7529753 GATGAGAGGTCTCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 -ATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGA
* * * *
7529803 TATGAGAAGTCCCATGTAAGACCATATCTGGGATATGGCGTTGGCAGTAC-A
1 -ATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-T-CGA
* ** *
7529854 A-GAAACATCTCATGTAAGACCATGTCTGGGACATGGCTTTGG
1 ATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGG
7529896 AATGTTATTA
Statistics
Matches: 117, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 34 0.29
50 81 0.69
51 1 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
ATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGA
Found at i:7529819 original size:100 final size:99
Alignment explanation
Indices: 7529703--7529890 Score: 245
Period size: 100 Copynumber: 1.9 Consensus size: 99
7529693 TCATTGAGAT
* * * * * **
7529703 TATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGTGTTGGCA-T-CGAGATGAGAGGTCTC
1 TATGAGAAGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCAGTAC-A-A-GAAACATCTC
*
7529766 CCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
63 ACGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
* *
7529803 TATGAGAAGTCCCATGTAAGACCATATCTGGGATATGGCGTTGGCAGTACAAGAAACATCTCATG
1 TATGAGAAGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCAGTACAAGAAACATCTCACG
7529868 TAAGACCATGTCTGGGACATGGC
66 TAAGACCATGTCTGGGACATGGC
7529891 TTTGGAATGT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
99 31 0.41
100 42 0.55
101 2 0.03
102 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (99 bp):
TATGAGAAGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCAGTACAAGAAACATCTCACG
TAAGACCATGTCTGGGACATGGCATGGGCACCGA
Found at i:7533853 original size:31 final size:31
Alignment explanation
Indices: 7533774--7533858 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 31
7533764 TTGATATATG
* *
7533774 AACTTTAA-TTTGATGCAATTATACACATGA
1 AACTTTAATTTTGATTCAAATATACACATGA
* * * * *
7533804 AACTTTGATTGTGGTTCAAATGTATACATGA
1 AACTTTAATTTTGATTCAAATATACACATGA
*
7533835 AACTTTAATTTTGATTCAATTATA
1 AACTTTAATTTTGATTCAAATATA
7533859 TGCACATTTA
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
30 7 0.17
31 35 0.83
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (31 bp):
AACTTTAATTTTGATTCAAATATACACATGA
Found at i:7542282 original size:12 final size:12
Alignment explanation
Indices: 7542247--7542289 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
7542237 TTAACAAACC
7542247 AAATAATTTTTAAA
1 AAATAA-TTTT-AA
*
7542261 AAAGTAATTTTGA
1 AAA-TAATTTTAA
7542274 AAATAATTTTAA
1 AAATAATTTTAA
7542286 AAAT
1 AAAT
7542290 TTTGTTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 12 0.46
13 4 0.15
14 7 0.27
15 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (12 bp):
AAATAATTTTAA
Found at i:7542562 original size:21 final size:21
Alignment explanation
Indices: 7542525--7542565 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7542515 GCCTGGCCCG
*
7542525 AATATATATTATGTTATAAAA
1 AATATATATTATATTATAAAA
7542546 AATATTATATTA-ATTATAAA
1 AATA-TATATTATATTATAAA
7542566 TGTTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AATATATATTATATTATAAAA
Found at i:7542776 original size:39 final size:39
Alignment explanation
Indices: 7542697--7542784 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
7542687 AAAAATTATA
* * * *
7542697 TTTAATACAATAAAATATTTATTATATTTATTTGTTTTT
1 TTTAATATAATAAAATATATATTATATTTATTAGTGTTT
7542736 TTTAATATAATAAAA-A-ATATTATATTTATGGTAGTGTTT
1 TTTAATATAATAAAATATATATTATATTTAT--TAGTGTTT
7542775 TTTAATATAA
1 TTTAATATAA
7542785 ATACTTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
37 12 0.28
38 1 0.02
39 30 0.70
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (39 bp):
TTTAATATAATAAAATATATATTATATTTATTAGTGTTT
Found at i:7542877 original size:15 final size:16
Alignment explanation
Indices: 7542857--7542886 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7542847 TAGTGTATTA
7542857 TATTTTAAAA-AAAAT
1 TATTTTAAAATAAAAT
7542872 TATTTTAAAATAAAA
1 TATTTTAAAATAAAA
7542887 ACTAATCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TATTTTAAAATAAAAT
Found at i:7543142 original size:53 final size:53
Alignment explanation
Indices: 7543071--7543175 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
7543061 TCGTGGCAAC
* *
7543071 AATTTTTATTACCATCTTCCAATTGCCAAACCGTATTAAATGTGGCTATTAAA
1 AATTATTATTACCATCTTCCAATTGCCAAACCGTATTAAATGTAGCTATTAAA
* * * **
7543124 AATTATTATTACCGTCTTCCAATTGTCAAGCTTTATTAAATGTAGCTATTAA
1 AATTATTATTACCATCTTCCAATTGCCAAACCGTATTAAATGTAGCTATTAA
7543176 CTTGAATCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (53 bp):
AATTATTATTACCATCTTCCAATTGCCAAACCGTATTAAATGTAGCTATTAAA
Found at i:7548960 original size:45 final size:45
Alignment explanation
Indices: 7548866--7549067 Score: 363
Period size: 45 Copynumber: 4.5 Consensus size: 45
7548856 AGTACTTCTA
*
7548866 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTG
7548912 ATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTG
7548957 ATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTG
7549002 ATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTG
*
7549047 ATC-AGGGAC-AAGTGATAAGTG
1 ATCAAGTGACAAAGTGATAAGTG
7549068 ATCATACGTA
Statistics
Matches: 154, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
43 12 0.08
44 5 0.03
45 109 0.71
46 28 0.18
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (45 bp):
ATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTG
Found at i:7553354 original size:20 final size:21
Alignment explanation
Indices: 7553331--7553375 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
7553321 GTCCCAAAAA
7553331 TTATTA-T-TTTAGATTCTTTT
1 TTATTATTCTTTAGATT-TTTT
7553351 TTA-TATTCTTTAGATTTTTT
1 TTATTATTCTTTAGATTTTTT
7553371 TTATT
1 TTATT
7553376 TTTGTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 2 0.09
20 11 0.50
21 9 0.41
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (21 bp):
TTATTATTCTTTAGATTTTTT
Found at i:7555213 original size:24 final size:24
Alignment explanation
Indices: 7555163--7555220 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
7555153 GTAGTTCAAG
* * *
7555163 TACAGAATCGAATGCATATTTAGA
1 TACAAAATCAAATGCATATTCAGA
*
7555187 TACAAAATCAAATGCATATTCATA
1 TACAAAATCAAATGCATATTCAGA
*
7555211 TACATAATCA
1 TACAAAATCA
7555221 GATCCAACCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.29
Consensus pattern (24 bp):
TACAAAATCAAATGCATATTCAGA
Found at i:7556964 original size:20 final size:20
Alignment explanation
Indices: 7556939--7556976 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7556929 AATATTAAAT
7556939 TAAAAAATTACATAAAATTC
1 TAAAAAATTACATAAAATTC
* *
7556959 TAAAAATTTATATAAAAT
1 TAAAAAATTACATAAAAT
7556977 GTTAAATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
TAAAAAATTACATAAAATTC
Found at i:7556982 original size:20 final size:19
Alignment explanation
Indices: 7556938--7556982 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
7556928 AAATATTAAA
7556938 TTAAAAAATTACATAAAAT
1 TTAAAAAATTACATAAAAT
* *
7556957 TCTAAAAATTTATATAAAAT
1 T-TAAAAAATTACATAAAAT
7556977 GTTAAA
1 -TTAAA
7556983 TAATAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 20 0.91
21 1 0.05
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (19 bp):
TTAAAAAATTACATAAAAT
Found at i:7557364 original size:39 final size:39
Alignment explanation
Indices: 7557310--7557389 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
7557300 TTAAATAAAT
* *
7557310 TACCTCGAAGTCTTTCTTGCTTTTTCATAGGCCAACCTG
1 TACCTCGAAGTCTTTCTTACCTTTTCATAGGCCAACCTG
* *
7557349 TACCTCGAAGTCTTTCTTACCTTTTCATTGGCCAACTTG
1 TACCTCGAAGTCTTTCTTACCTTTTCATAGGCCAACCTG
7557388 TA
1 TA
7557390 GCTTAACTCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.40
Consensus pattern (39 bp):
TACCTCGAAGTCTTTCTTACCTTTTCATAGGCCAACCTG
Found at i:7559140 original size:18 final size:18
Alignment explanation
Indices: 7559101--7559142 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7559091 TATGATTTAG
* *
7559101 AATTTTTTTAATTATTAT
1 AATTTTTTTAAATATTAA
7559119 AATTTTTTTAAA-ATATAA
1 AATTTTTTTAAATAT-TAA
7559137 AATTTT
1 AATTTT
7559143 GAATTTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTTTTTTAAATATTAA
Found at i:7559327 original size:16 final size:16
Alignment explanation
Indices: 7559286--7559327 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
7559276 ACTTGATTCG
*
7559286 AACTCGAAACTCGAAT
1 AACTCGAAATTCGAAT
*
7559302 AACTCG--ATTCGATT
1 AACTCGAAATTCGAAT
7559316 AACTCGAAATTC
1 AACTCGAAATTC
7559328 AAAATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 12 0.55
16 10 0.45
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (16 bp):
AACTCGAAATTCGAAT
Found at i:7568512 original size:14 final size:14
Alignment explanation
Indices: 7568493--7568520 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7568483 TCAACATTTT
7568493 TAATGATTTTAACA
1 TAATGATTTTAACA
7568507 TAATGATTTTAACA
1 TAATGATTTTAACA
7568521 ACAATTTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TAATGATTTTAACA
Found at i:7570054 original size:23 final size:23
Alignment explanation
Indices: 7570024--7570071 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
7570014 TCCAATTGGC
*
7570024 AAGTCTTATTAAATGTGGCTATT
1 AAGTCTTATGAAATGTGGCTATT
7570047 AAGTCTTATGAAATGTGGCTATT
1 AAGTCTTATGAAATGTGGCTATT
7570070 AA
1 AA
7570072 CTTGAAGGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (23 bp):
AAGTCTTATGAAATGTGGCTATT
Found at i:7575027 original size:14 final size:14
Alignment explanation
Indices: 7575008--7575047 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7574998 GTGATTGGCA
7575008 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7575022 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7575036 GGAAAATGTTTT
1 GTAAAATGTTTT
7575048 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7575056 original size:20 final size:20
Alignment explanation
Indices: 7575031--7575070 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7575021 CGTAAAATGA
*
7575031 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7575051 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7575071 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7575060 original size:34 final size:35
Alignment explanation
Indices: 7575016--7575082 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7575006 CAGTAAAATG
*
7575016 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7575050 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7575083 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7575086 original size:14 final size:15
Alignment explanation
Indices: 7575010--7575086 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7575000 GATTGGCAGT
* *
7575010 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
7575024 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
7575038 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7575058 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7575073 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7575087 TGTTTGGTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7575141 original size:32 final size:31
Alignment explanation
Indices: 7575063--7575147 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 31
7575053 TCTGTAAAAT
* *
7575063 GATTTACTGGAAAATATTTTCTGGTGTTTGGTA
1 GATTT-CT-GAAAATATTTTCTGCTGTTTGGCA
* * *
7575096 AATCTGTGTAAAATATTTTCTGCTGTTTGGCA
1 GATTTCTG-AAAATATTTTCTGCTGTTTGGCA
7575128 GATTTCCTGAAAATATTTTC
1 GATTT-CTGAAAATATTTTC
7575148 CGAAAAAGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
31 1 0.02
32 36 0.86
33 5 0.12
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.45
Consensus pattern (31 bp):
GATTTCTGAAAATATTTTCTGCTGTTTGGCA
Found at i:7575181 original size:10 final size:10
Alignment explanation
Indices: 7575166--7575196 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
7575156 TTGTTTTTAC
7575166 ATATATTAAT
1 ATATATTAAT
7575176 ATATATTAAT
1 ATATATTAAT
7575186 ATATATTAAT
1 ATATATTAAT
7575196 A
1 A
7575197 AATTGTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
ATATATTAAT
Found at i:7577680 original size:25 final size:25
Alignment explanation
Indices: 7577639--7577690 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
7577629 AAAATGTCTG
*
7577639 CTGCTTAGAAGAGAATGGAAAATGT
1 CTGCTTAGAAGAAAATGGAAAATGT
7577664 CTGCTTAG-AGAAAAATGGAAAATGT
1 CTGCTTAGAAG-AAAATGGAAAATGT
7577689 CT
1 CT
7577691 TACCAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (25 bp):
CTGCTTAGAAGAAAATGGAAAATGT
Found at i:7578225 original size:25 final size:26
Alignment explanation
Indices: 7578192--7578242 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
7578182 ATTATAGATA
*
7578192 TATATATTGCCGAATTTG-ATTGTTT
1 TATATATTGCCAAATTTGAATTGTTT
*
7578217 TATATATTGCTAAATTTGAATTGTTT
1 TATATATTGCCAAATTTGAATTGTTT
7578243 ATAGTTATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.27, C:0.06, G:0.14, T:0.53
Consensus pattern (26 bp):
TATATATTGCCAAATTTGAATTGTTT
Found at i:7578312 original size:61 final size:62
Alignment explanation
Indices: 7578246--7578408 Score: 170
Period size: 61 Copynumber: 2.7 Consensus size: 62
7578236 ATTGTTTATA
* *
7578246 GTTATACATTGTCGAAATTGATTTGTATATGAAGATA-AGTTGCCGAA-TTAATTCGTATATG
1 GTTATACATTGTCGAAATTGATTTGTATATGAAGATACA-TTGCCAAACTTAATTCATATATG
* * * ** * * *
7578307 GTTATACAATGTAGAATTTGATTTGTATATGATTATACATTTCTAAACTTGATTCATATATG
1 GTTATACATTGTCGAAATTGATTTGTATATGAAGATACATTGCCAAACTTAATTCATATATG
* * **
7578369 GTTATTCATTG-CCAAATTGATTTGTATATGATTATACATT
1 GTTATACATTGTCGAAATTGATTTGTATATGAAGATACATT
7578409 TCCGAATTTG
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
61 63 0.74
62 22 0.26
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.44
Consensus pattern (62 bp):
GTTATACATTGTCGAAATTGATTTGTATATGAAGATACATTGCCAAACTTAATTCATATATG
Found at i:7578336 original size:31 final size:30
Alignment explanation
Indices: 7578296--7578435 Score: 95
Period size: 31 Copynumber: 4.6 Consensus size: 30
7578286 TGCCGAATTA
*
7578296 ATTCGTATATGGTTATACAATGTAGAATTTG
1 ATTCGTATATGATTATACAATGTA-AATTTG
* * * *
7578327 ATTTGTATATGATTATACATTTCTAAACTTG
1 ATTCGTATATGATTATACA-ATGTAAATTTG
* * * * *
7578358 ATTCATATATGGTTATTCATTGCCAAA-TTG
1 ATTCGTATATGATTATACAATG-TAAATTTG
* * *
7578388 ATTTGTATATGATTATAC-ATTTCCGAATTTG
1 ATTCGTATATGATTATACAATGT--AAATTTG
*
7578419 ATTCGTATATGAATATA
1 ATTCGTATATGATTATA
7578436 GATATTGTTG
Statistics
Matches: 83, Mismatches: 21, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
29 1 0.01
30 21 0.25
31 58 0.70
32 3 0.04
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (30 bp):
ATTCGTATATGATTATACAATGTAAATTTG
Found at i:7579760 original size:23 final size:22
Alignment explanation
Indices: 7579715--7579795 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
7579705 ACTAGATTTT
**
7579715 TGCCACGAAGGCATTACTGAATA
1 TGCCAC-AAGGCATTACAAAATA
7579738 TGCCACATAGGCATTACAAAATA
1 TGCCACA-AGGCATTACAAAATA
** * * *
7579761 CACCACACAAGCCTCACAAAATA
1 TGCCACA-AGGCATTACAAAATA
7579784 TGCCACTAAGGC
1 TGCCAC-AAGGC
7579796 TTTGCAGATC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
22 1 0.02
23 43 0.96
24 1 0.02
ACGTcount: A:0.40, C:0.28, G:0.15, T:0.17
Consensus pattern (22 bp):
TGCCACAAGGCATTACAAAATA
Found at i:7581212 original size:29 final size:28
Alignment explanation
Indices: 7581169--7581228 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
7581159 TACATGTTGT
* *
7581169 ATGCACTCAACAAAATCATAATAGCAAC
1 ATGCACTCAACAAAAACATAACAGCAAC
*
7581197 ATGCACTTTAACAAAAACATAACAGCAAC
1 ATGCAC-TCAACAAAAACATAACAGCAAC
7581226 ATG
1 ATG
7581229 GTTAGCCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.18
Consensus pattern (28 bp):
ATGCACTCAACAAAAACATAACAGCAAC
Found at i:7594754 original size:20 final size:20
Alignment explanation
Indices: 7594731--7594770 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7594721 AGAAAATATG
7594731 TTGCTGCAACATGCATACAA
1 TTGCTGCAACATGCATACAA
**
7594751 TTGCTGCAGTATGCATACAA
1 TTGCTGCAACATGCATACAA
7594771 GCTGTATGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (20 bp):
TTGCTGCAACATGCATACAA
Found at i:7601102 original size:8 final size:8
Alignment explanation
Indices: 7601091--7601195 Score: 60
Period size: 8 Copynumber: 13.8 Consensus size: 8
7601081 TTTATTCATC
7601091 TATTTACT
1 TATTTACT
7601099 TATTTACT
1 TATTTACT
* *
7601107 TATATATT
1 TATTTACT
*
7601115 TATTCAC-
1 TATTTACT
*
7601122 TA-TT-CC
1 TATTTACT
7601128 T-TTTACTT
1 TATTTAC-T
* *
7601136 TATTCATT
1 TATTTACT
*
7601144 TATTTACC
1 TATTTACT
*
7601152 CATTTACT
1 TATTTACT
*
7601160 TATTTATT
1 TATTTACT
*
7601168 TATATA-T
1 TATTTACT
*
7601175 TATTCACT
1 TATTTACT
7601183 TATTTACT
1 TATTTACT
7601191 T-TTTA
1 TATTTA
7601196 TTTTAATTCT
Statistics
Matches: 71, Mismatches: 20, Indels: 13
0.68 0.19 0.12
Matches are distributed among these distances:
5 1 0.01
6 4 0.06
7 12 0.17
8 51 0.72
9 3 0.04
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTTACT
Found at i:7601330 original size:14 final size:15
Alignment explanation
Indices: 7601311--7601340 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7601301 TGTGCATTTA
7601311 TTATTATTA-CTATT
1 TTATTATTATCTATT
7601325 TTATTATTATCTATT
1 TTATTATTATCTATT
7601340 T
1 T
7601341 ATTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTATTATCTATT
Found at i:7601581 original size:3 final size:3
Alignment explanation
Indices: 7601575--7601652 Score: 93
Period size: 3 Copynumber: 25.3 Consensus size: 3
7601565 CTTCGTTTTT
* * *
7601575 TTA TTA TTA CTA ATA TGA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
7601623 TTA TTA ATA TTA ATA TTA TGCTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T--TA TTA TTA T
7601653 GGTATTCCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
3 61 0.95
5 3 0.05
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:7615538 original size:44 final size:44
Alignment explanation
Indices: 7615467--7615775 Score: 302
Period size: 44 Copynumber: 7.0 Consensus size: 44
7615457 ATAGCCAATA
* *
7615467 TTATCTCTCTAAAGTTGCAGTGGAGCAGATTGATGCTACAAATC
1 TTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
* * * *
7615511 TTATCTC-CTTAAATTTGTAGT-GCAGCAGATTGAAGATAGC-GATC
1 TTATCTCTC-TAAAGTTGCAGTAG-AGCAGATTGAAGCTA-CAAATC
* *
7615555 TTATCTCTCTAAAGTTGTAGTAGAGCAGATTGAAGCTACAAACC
1 TTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
* * * *
7615599 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCGAATC
1 TTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTA-CAAATC
* * * *
7615644 TTATCTCTCTAAAGTTACAATAGAGCAAATTGAAGCTAAAAATC
1 TTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
* * * *
7615688 TTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGCTACAAATC
1 TTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
* * * * * * *
7615732 -CAGTTTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCGACAAATC
1 TTA-TCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
7615776 CAATATCTAT
Statistics
Matches: 223, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
43 4 0.02
44 180 0.81
45 39 0.17
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
TTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
Found at i:7615681 original size:89 final size:88
Alignment explanation
Indices: 7615457--7615775 Score: 365
Period size: 88 Copynumber: 3.6 Consensus size: 88
7615447 TGAAATCATC
* * * * * *
7615457 ATAGCCAATATTATCTCTCTAAAGTTGCAGTGGAGCAGATTGATGCTACAAATCTTATCTCCTTA
1 ATAGCGAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTG
* *
7615522 AATTTGTAGTGCAGCAGATTGAAG
66 AAGTTGCAGTG-AGCAGATTGAAG
* *
7615546 ATAGCG-ATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATTGAAGCTACAAACCTTATCTCCCTG
1 ATAGCGAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTG
7615610 AAGTTGCAGTAGAGCAGATTGAAG
66 AAGTTGCAGT-GAGCAGATTGAAG
* * * *
7615634 ATAGCGAATCTTATCTCTCTAAAGTTACAATAGAGCAAATTGAAGCTAAAAATCTTATCTCCCTG
1 ATAGCGAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTG
*
7615699 AAGTTGCAATGGAGCAGATTGAAG
66 AAGTTGCAGT-GAGCAGATTGAAG
* * * * * * * * *
7615723 CTA-CAAATC-CAGTTTCCCTGAAGTTGCAGTGGAGCAAATTGAAGCGACAAATC
1 ATAGCGAATCTTA-TCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
7615776 CAATATCTAT
Statistics
Matches: 198, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.01
88 115 0.58
89 82 0.41
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (88 bp):
ATAGCGAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTG
AAGTTGCAGTGAGCAGATTGAAG
Found at i:7615789 original size:44 final size:44
Alignment explanation
Indices: 7615655--7615792 Score: 141
Period size: 44 Copynumber: 3.1 Consensus size: 44
7615645 TATCTCTCTA
* * * * ** * *
7615655 AAGTTACAATAGAGCAAATTGAAGCTAAAAATCTTATCTCCCTG
1 AAGTTGCAATGGAGCAAATTGAAGCGACAAATCCAATATCCATG
* * * * *
7615699 AAGTTGCAATGGAGCAGATTGAAGCTACAAATCCAGTTTCCCTG
1 AAGTTGCAATGGAGCAAATTGAAGCGACAAATCCAATATCCATG
* *
7615743 AAGTTGCAGTGGAGCAAATTGAAGCGACAAATCCAATATCTATG
1 AAGTTGCAATGGAGCAAATTGAAGCGACAAATCCAATATCCATG
7615787 AAGTTG
1 AAGTTG
7615793 TAAGAGGTCG
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 79 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (44 bp):
AAGTTGCAATGGAGCAAATTGAAGCGACAAATCCAATATCCATG
Found at i:7615791 original size:177 final size:176
Alignment explanation
Indices: 7615457--7615792 Score: 372
Period size: 177 Copynumber: 1.9 Consensus size: 176
7615447 TGAAATCATC
* * * * * * *
7615457 ATAGCCAATATTATCTCTCTAAAGTTGCAGTGGAGCAGATTGATGCTACAAATCTTATCTCCTTA
1 ATAGCCAATATTATCTCTCTAAAGTTACAATAGAGCAAATTGAAGCTAAAAATCTTATCTCCCTA
* * * * * * * *
7615522 AATTTGTAGTGCAGCAGATTGAAGATAGCGATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATTG
66 AAGTTGCAATGCAGCAGATTGAAGATAGCAATCTCATCTCCCTAAAGTTGCAGTAGAGCAAATTG
* * *
7615587 AAGCTACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG
131 AAGCGACAAACCATATCT-CATGAAGTTGCAGTAGAGCAGATTGAAG
* * *
7615634 ATAGCGAATCTTATCTCTCTAAAGTTACAATAGAGCAAATTGAAGCTAAAAATCTTATCTCCCTG
1 ATAGCCAATATTATCTCTCTAAAGTTACAATAGAGCAAATTGAAGCTAAAAATCTTATCTCCCTA
* * * * *
7615699 AAGTTGCAATGGAGCAGATTGAAGCTA-CAAATC-CAGTTTCCCTGAAGTTGCAGTGGAGCAAAT
66 AAGTTGCAATGCAGCAGATTGAAGATAGC-AATCTCA-TCTCCCTAAAGTTGCAGTAGAGCAAAT
7615762 TGAAGCGACAAATCCAATATCT-ATGAAGTTG
129 TGAAGCGACAAA-CC-ATATCTCATGAAGTTG
7615793 TAAGAGGTCG
Statistics
Matches: 129, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
176 2 0.02
177 120 0.93
178 2 0.02
179 5 0.04
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (176 bp):
ATAGCCAATATTATCTCTCTAAAGTTACAATAGAGCAAATTGAAGCTAAAAATCTTATCTCCCTA
AAGTTGCAATGCAGCAGATTGAAGATAGCAATCTCATCTCCCTAAAGTTGCAGTAGAGCAAATTG
AAGCGACAAACCATATCTCATGAAGTTGCAGTAGAGCAGATTGAAG
Found at i:7618804 original size:14 final size:17
Alignment explanation
Indices: 7618772--7618809 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
7618762 AATTGTAAAG
7618772 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
7618789 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
7618803 TATATTA
1 TATATTA
7618810 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:7619756 original size:3 final size:3
Alignment explanation
Indices: 7619724--7619767 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
7619714 GTGAGGTAAG
* * * *
7619724 TAT TAA TAT TAG TAT TAA TAT TAG TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7619768 GTGGGAATTA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:7619767 original size:12 final size:12
Alignment explanation
Indices: 7619722--7619764 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
7619712 ATGTGAGGTA
7619722 AGTATTAATATT
1 AGTATTAATATT
7619734 AGTATTAATATT
1 AGTATTAATATT
*
7619746 AGTATTATTATT
1 AGTATTAATATT
*
7619758 ATTATTA
1 AGTATTA
7619765 TTAGTGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (12 bp):
AGTATTAATATT
Found at i:7622603 original size:23 final size:22
Alignment explanation
Indices: 7622576--7622732 Score: 83
Period size: 23 Copynumber: 6.8 Consensus size: 22
7622566 TAAAATAGAA
*
7622576 ACAAATCCTTAAAATTGTGGAAG
1 ACAAATCC-TAAAATTGTGCAAG
* *
7622599 ACAAATGCCCACAATT-TAGCCAA-
1 ACAAAT-CCTAAAATTGT-G-CAAG
* *
7622622 ACAAATCCCTAAAATTATGGAAG
1 ACAAAT-CCTAAAATTGTGCAAG
*
7622645 ACAAATGCCTACAAATTAG-CCAA-
1 ACAAAT-CCTA-AAATT-GTGCAAG
*
7622668 ACAAATCCATAAAATTGTGAAAG
1 ACAAATCC-TAAAATTGTGCAAG
*
7622691 ACAAATGCCTACAATT-TAGCCAA-
1 ACAAAT-CCTAAAATTGT-G-CAAG
7622714 ACAAATCCATAAAATTGTG
1 ACAAATCC-TAAAATTGTG
7622733 AAAGGTAACT
Statistics
Matches: 103, Mismatches: 16, Indels: 30
0.69 0.11 0.20
Matches are distributed among these distances:
21 1 0.01
22 15 0.15
23 70 0.68
24 17 0.17
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.22
Consensus pattern (22 bp):
ACAAATCCTAAAATTGTGCAAG
Found at i:7622627 original size:46 final size:46
Alignment explanation
Indices: 7622574--7622732 Score: 264
Period size: 46 Copynumber: 3.5 Consensus size: 46
7622564 AATAAAATAG
* *
7622574 AAACAAATCCTTAAAATTGTGGAAGACAAATGCCCACAATTTAGCC
1 AAACAAATCCATAAAATTGTGGAAGACAAATGCCTACAATTTAGCC
* * *
7622620 AAACAAATCCCTAAAATTATGGAAGACAAATGCCTACAAATTAGCC
1 AAACAAATCCATAAAATTGTGGAAGACAAATGCCTACAATTTAGCC
*
7622666 AAACAAATCCATAAAATTGTGAAAGACAAATGCCTACAATTTAGCC
1 AAACAAATCCATAAAATTGTGGAAGACAAATGCCTACAATTTAGCC
7622712 AAACAAATCCATAAAATTGTG
1 AAACAAATCCATAAAATTGTG
7622733 AAAGGTAACT
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 105 1.00
ACGTcount: A:0.47, C:0.20, G:0.11, T:0.21
Consensus pattern (46 bp):
AAACAAATCCATAAAATTGTGGAAGACAAATGCCTACAATTTAGCC
Found at i:7624495 original size:27 final size:26
Alignment explanation
Indices: 7624462--7624512 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
7624452 CCAGATTCTT
* *
7624462 CCTTACTTGTCTCACCCTCCAAGCCTA
1 CCTTACTCGCCTCACCC-CCAAGCCTA
*
7624489 CCTTACTCGCCTTACCCCCAAGCC
1 CCTTACTCGCCTCACCCCCAAGCC
7624513 ATCCGATGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.18, C:0.49, G:0.08, T:0.25
Consensus pattern (26 bp):
CCTTACTCGCCTCACCCCCAAGCCTA
Found at i:7630370 original size:18 final size:18
Alignment explanation
Indices: 7630347--7630386 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
7630337 TACCTTTACC
*
7630347 TTCTGATCTAGGTTGCAA
1 TTCTGATCCAGGTTGCAA
7630365 TTCTGATCCAGGTTGCAA
1 TTCTGATCCAGGTTGCAA
7630383 TTCT
1 TTCT
7630387 CATCGATCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (18 bp):
TTCTGATCCAGGTTGCAA
Found at i:7634408 original size:8 final size:8
Alignment explanation
Indices: 7634395--7634419 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7634385 ATTGTGATTG
7634395 AAAGTGAA
1 AAAGTGAA
7634403 AAAGTGAA
1 AAAGTGAA
7634411 AAAGTGAA
1 AAAGTGAA
7634419 A
1 A
7634420 TTGAACTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (8 bp):
AAAGTGAA
Found at i:7641407 original size:12 final size:11
Alignment explanation
Indices: 7641392--7641421 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
7641382 AAAATAAATA
7641392 AAAAAGTATTTT
1 AAAAA-TATTTT
7641404 AAAAATATTTT
1 AAAAATATTTT
7641415 AAAAATA
1 AAAAATA
7641422 AAAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:7642333 original size:14 final size:14
Alignment explanation
Indices: 7642314--7642345 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7642304 TCAAATCACC
7642314 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
7642328 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
7642342 GGGC
1 GGGC
7642346 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:7647390 original size:14 final size:14
Alignment explanation
Indices: 7647371--7647402 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7647361 TCAAATCACC
7647371 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
7647385 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
7647399 GGGC
1 GGGC
7647403 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:7648998 original size:29 final size:29
Alignment explanation
Indices: 7648956--7649014 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7648946 CTATTAATAT
7648956 TCTTTGAGGAATGATATGAAAAACCTGAG
1 TCTTTGAGGAATGATATGAAAAACCTGAG
7648985 TCTTTGAGGAATGATATGAAAAACCTGAG
1 TCTTTGAGGAATGATATGAAAAACCTGAG
7649014 T
1 T
7649015 GTCTTAGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (29 bp):
TCTTTGAGGAATGATATGAAAAACCTGAG
Found at i:7657331 original size:27 final size:27
Alignment explanation
Indices: 7657293--7657345 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
7657283 TTCATATGTA
7657293 TTTCCTTTTACATCTTACAAAGCAATG
1 TTTCCTTTTACATCTTACAAAGCAATG
7657320 TTTCCTTTTACATCTTACAAAGCAAT
1 TTTCCTTTTACATCTTACAAAGCAAT
7657346 AAATTGTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.42
Consensus pattern (27 bp):
TTTCCTTTTACATCTTACAAAGCAATG
Found at i:7664181 original size:13 final size:13
Alignment explanation
Indices: 7664163--7664187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7664153 ATTTTAATAC
7664163 TATAAAATTGTTG
1 TATAAAATTGTTG
7664176 TATAAAATTGTT
1 TATAAAATTGTT
7664188 TAGATGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TATAAAATTGTTG
Found at i:7667247 original size:26 final size:26
Alignment explanation
Indices: 7667218--7667268 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7667208 TAAGCTTTCC
7667218 AATGTGCAAGCTGCAACCTCAGCAAA
1 AATGTGCAAGCTGCAACCTCAGCAAA
* * *
7667244 AATGTGTAAGTTGCAAGCTCAGCAA
1 AATGTGCAAGCTGCAACCTCAGCAA
7667269 GATGTCAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AATGTGCAAGCTGCAACCTCAGCAAA
Found at i:7667311 original size:25 final size:25
Alignment explanation
Indices: 7667283--7667330 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
7667273 TCAAAGCTGC
* *
7667283 GAGCTTAGCGAGAAGTGCGAGCTAT
1 GAGCTCAGCAAGAAGTGCGAGCTAT
**
7667308 GAGCTCAGCAAGTGGTGCGAGCT
1 GAGCTCAGCAAGAAGTGCGAGCT
7667331 CATCAAAAGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.19, G:0.38, T:0.19
Consensus pattern (25 bp):
GAGCTCAGCAAGAAGTGCGAGCTAT
Found at i:7667331 original size:18 final size:18
Alignment explanation
Indices: 7667308--7667347 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7667298 TGCGAGCTAT
**
7667308 GAGCTCAGCAAGTGGTGC
1 GAGCTCAGCAAAAGGTGC
*
7667326 GAGCTCATCAAAAGGTGC
1 GAGCTCAGCAAAAGGTGC
7667344 GAGC
1 GAGC
7667348 CCTGTATAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.35, T:0.15
Consensus pattern (18 bp):
GAGCTCAGCAAAAGGTGC
Found at i:7667586 original size:44 final size:44
Alignment explanation
Indices: 7667523--7667615 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
7667513 CCTATCAAAT
*
7667523 TGCAAGCCGAAGTGGCGGAC-AGTCTAAATGCAAACTTGAATGGG
1 TGCAAACCGAAGTGGCGGACGA-TCTAAATGCAAACTTGAATGGG
* ** *
7667567 TGCAAACCGGAGTGGCGGACGATCTAAATGCAAGTTTGAGTGGG
1 TGCAAACCGAAGTGGCGGACGATCTAAATGCAAACTTGAATGGG
7667611 TGCAA
1 TGCAA
7667616 GCCAAAATGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 42 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.19
Consensus pattern (44 bp):
TGCAAACCGAAGTGGCGGACGATCTAAATGCAAACTTGAATGGG
Found at i:7668940 original size:11 final size:11
Alignment explanation
Indices: 7668926--7668950 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7668916 ATATTAAGCC
7668926 AATATTAAAAT
1 AATATTAAAAT
7668937 AATATTAAAAT
1 AATATTAAAAT
7668948 AAT
1 AAT
7668951 GAATTAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATATTAAAAT
Found at i:7675090 original size:30 final size:29
Alignment explanation
Indices: 7675054--7675113 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
7675044 TAACGCAAGG
*
7675054 GATGAATTTATCGTTGAAAGATAATTGGTT
1 GATGAATTTATCGTTG-AAGATAATTAGTT
*
7675084 GATGAATTTATCGTTGAGGATAATTAGTT
1 GATGAATTTATCGTTGAAGATAATTAGTT
7675113 G
1 G
7675114 TGGTAACGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.32, C:0.03, G:0.25, T:0.40
Consensus pattern (29 bp):
GATGAATTTATCGTTGAAGATAATTAGTT
Found at i:7688756 original size:17 final size:18
Alignment explanation
Indices: 7688724--7688758 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7688714 CAATGAATAA
*
7688724 AAAATACTTTTTTTTAAT
1 AAAATACTTATTTTTAAT
7688742 AAAATA-TTATTTTTAAT
1 AAAATACTTATTTTTAAT
7688759 TTTCCCGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
AAAATACTTATTTTTAAT
Found at i:7689090 original size:32 final size:31
Alignment explanation
Indices: 7689048--7689112 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 31
7689038 TTTTGTTAGG
7689048 TTATTAATTTTGTTA-GCT-TCTGTTTACATTT
1 TTATTAATTTT-TTATG-TATCTGTTTACATTT
7689079 TTATGTAATTTTTTATGTAATCTGTTTACATTT
1 TTAT-TAATTTTTTATGT-ATCTGTTTACATTT
7689112 T
1 T
7689113 GAAACTGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
31 8 0.27
32 8 0.27
33 14 0.47
ACGTcount: A:0.22, C:0.08, G:0.09, T:0.62
Consensus pattern (31 bp):
TTATTAATTTTTTATGTATCTGTTTACATTT
Found at i:7692757 original size:11 final size:11
Alignment explanation
Indices: 7692741--7692765 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7692731 AAACAACTTA
7692741 TAATGTCTAGG
1 TAATGTCTAGG
7692752 TAATGTCTAGG
1 TAATGTCTAGG
7692763 TAA
1 TAA
7692766 AGTATTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (11 bp):
TAATGTCTAGG
Found at i:7694246 original size:46 final size:46
Alignment explanation
Indices: 7694176--7694383 Score: 332
Period size: 46 Copynumber: 4.6 Consensus size: 46
7694166 TTTGAGTACT
*
7694176 TCTGATC-AGTGGCAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
7694221 TCTGATCAAGTGACAAAGCGGTAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
7694267 TCTGATCAAGTGACAAAGTGATAAATGGTAGCCTTAGCTGCACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
7694313 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
7694359 TCTAATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
7694384 ATCATACGTA
Statistics
Matches: 151, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
44 12 0.08
45 12 0.08
46 127 0.84
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:7695182 original size:26 final size:27
Alignment explanation
Indices: 7695148--7695215 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 27
7695138 AAATTGCAAA
*
7695148 ATAAAAAAA-TTTATAATTTTATTTAC
1 ATAAAAAAACATTATAATTTTATTTAC
7695174 ATAAAAAAACCATTATAATTTTATTTAC
1 ATAAAAAAA-CATTATAATTTTATTTAC
*
7695202 ATAAAAAACCATTA
1 ATAAAAAAACATTA
7695216 AATATGAGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 9 0.24
27 5 0.13
28 24 0.63
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (27 bp):
ATAAAAAAACATTATAATTTTATTTAC
Found at i:7695207 original size:27 final size:28
Alignment explanation
Indices: 7695158--7695215 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
7695148 ATAAAAAAAT
7695158 TTATAATTTTATTTACATAAAAAAACCA
1 TTATAATTTTATTTACATAAAAAAACCA
7695186 TTATAATTTTATTTACAT-AAAAAACCA
1 TTATAATTTTATTTACATAAAAAAACCA
7695213 TTA
1 TTA
7695216 AATATGAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 12 0.40
28 18 0.60
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (28 bp):
TTATAATTTTATTTACATAAAAAAACCA
Found at i:7695552 original size:6 final size:6
Alignment explanation
Indices: 7695536--7695570 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
7695526 AGAATGTAGT
* *
7695536 TCTGTC TCTGGC ACTGGC TCTGGC TCTGGC TCTGG
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGG
7695571 TGCATGATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.03, C:0.31, G:0.31, T:0.34
Consensus pattern (6 bp):
TCTGGC
Found at i:7699362 original size:14 final size:13
Alignment explanation
Indices: 7699336--7699386 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
7699326 GTTTATTTGA
7699336 AATATAATAATAT
1 AATATAATAATAT
7699349 AATATAATTAATAT
1 AATATAA-TAATAT
* *
7699363 AAT-TTACAATAT
1 AATATAATAATAT
*
7699375 AATAAAATAATA
1 AATATAATAATA
7699387 ATATACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 8 0.26
13 14 0.45
14 9 0.29
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
AATATAATAATAT
Found at i:7700385 original size:38 final size:38
Alignment explanation
Indices: 7700334--7700451 Score: 213
Period size: 38 Copynumber: 3.2 Consensus size: 38
7700324 AAAAAGTCAG
7700334 TTATAATTAAACTTTTAATAAAATTATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATTATTTTTAATTTTT
7700372 TTATAATTAAACTTTTAATAAAATTATTTTTAA-TTTT
1 TTATAATTAAACTTTTAATAAAATTATTTTTAATTTTT
*
7700409 TT-TAATTAAACTTTTAATAAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATTATTTTTAATTTTT
7700446 TTATAA
1 TTATAA
7700452 ACTTTATATG
Statistics
Matches: 77, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
36 29 0.38
37 12 0.16
38 36 0.47
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.57
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATTATTTTTAATTTTT
Found at i:7700416 original size:36 final size:36
Alignment explanation
Indices: 7700337--7700456 Score: 199
Period size: 36 Copynumber: 3.3 Consensus size: 36
7700327 AAGTCAGTTA
7700337 TAATTAAACTTTTAATAAAATTATTTTTAATTTTTTT
1 TAATTAAACTTTTAATAAAATTATTTTTAA-TTTTTT
7700374 ATAATTAAACTTTTAATAAAATTATTTTTAATTTTTT
1 -TAATTAAACTTTTAATAAAATTATTTTTAATTTTTT
*
7700411 TAATTAAACTTTTAATAAAATGATTTTTAATTTTTT
1 TAATTAAACTTTTAATAAAATTATTTTTAATTTTTT
7700447 T-A-TAAACTTT
1 TAATTAAACTTT
7700457 ATATGTTAAA
Statistics
Matches: 81, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
34 8 0.10
35 1 0.01
36 36 0.44
37 6 0.07
38 30 0.37
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (36 bp):
TAATTAAACTTTTAATAAAATTATTTTTAATTTTTT
Found at i:7700656 original size:22 final size:21
Alignment explanation
Indices: 7700630--7700715 Score: 82
Period size: 22 Copynumber: 3.7 Consensus size: 21
7700620 ACAATATTAC
7700630 AATATTCATACAAAAAAATTGT
1 AATATTCATACAAAAAAATT-T
*
7700652 AATATTCATATAAAATTATAATATT
1 AATATTCATACAAAA--A-AAT-TT
*
7700677 ACAATATTCATACAAAAAAATTAC
1 --AATATTCATACAAAAAAATT-T
7700701 AATATTCATACAAAA
1 AATATTCATACAAAA
7700716 TTACAATATT
Statistics
Matches: 54, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
22 29 0.54
23 1 0.02
24 4 0.07
25 5 0.09
26 1 0.02
27 14 0.26
ACGTcount: A:0.56, C:0.10, G:0.01, T:0.33
Consensus pattern (21 bp):
AATATTCATACAAAAAAATTT
Found at i:7700675 original size:41 final size:43
Alignment explanation
Indices: 7700622--7700837 Score: 161
Period size: 41 Copynumber: 5.1 Consensus size: 43
7700612 AAAAAATTAC
** *
7700622 AATATTACAATATTCATACAAAAAAATTGTAATATTCATATAAAATTA
1 AATATTACAATATTCATACAAAAAAATTACAATATTC--AT-ACA--A
7700670 TAATATTACAATATTCATACAAAAAAATTACAATATTCATAC-A
1 -AATATTACAATATTCATACAAAAAAATTACAATATTCATACAA
* * **
7700713 AA-ATTACAATATTCATACAAAATACTAATCCAAAACTATAAATAC-A
1 AATATTACAATATTCATACAAAA-A--AAT-TACAA-TATTCATACAA
*
7700759 AAT-TT---A-ATT-AT--AAAATAATTACAATATTCATA-AA
1 AATATTACAATATTCATACAAAAAAATTACAATATTCATACAA
*
7700793 AAT-TTACAATATTCATACAAAAAAATTAGAATATTCATACAA
1 AATATTACAATATTCATACAAAAAAATTACAATATTCATACAA
7700835 AAT
1 AAT
7700838 TCTAATCCAA
Statistics
Matches: 138, Mismatches: 14, Indels: 37
0.73 0.07 0.20
Matches are distributed among these distances:
34 12 0.09
35 3 0.02
36 3 0.02
37 1 0.01
38 3 0.02
39 6 0.04
41 41 0.30
42 11 0.08
43 2 0.01
44 3 0.02
45 3 0.02
46 13 0.09
47 2 0.01
49 35 0.25
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.32
Consensus pattern (43 bp):
AATATTACAATATTCATACAAAAAAATTACAATATTCATACAA
Found at i:7700675 original size:49 final size:49
Alignment explanation
Indices: 7700597--7700725 Score: 204
Period size: 49 Copynumber: 2.6 Consensus size: 49
7700587 TTATAACACG
7700597 TTACAATATTCATACAAAAAATTACAATATTACAATATTCATACAAAAAAA
1 TTACAATATTCATAC--AAAATTACAATATTACAATATTCATACAAAAAAA
** * *
7700648 TTGTAATATTCATATAAAATTATAATATTACAATATTCATACAAAAAAA
1 TTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAA
7700697 TTACAATATTCATACAAAATTACAATATT
1 TTACAATATTCATACAAAATTACAATATT
7700726 CATACAAAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
49 58 0.83
51 12 0.17
ACGTcount: A:0.53, C:0.12, G:0.01, T:0.34
Consensus pattern (49 bp):
TTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAA
Found at i:7700717 original size:19 final size:19
Alignment explanation
Indices: 7700674--7700838 Score: 115
Period size: 19 Copynumber: 8.2 Consensus size: 19
7700664 AAATTATAAT
7700674 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATAC---AAA
7700696 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
7700715 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
* * *
7700734 A-TACTA-ATCCAAAACTATAA
1 ATTACAATATTC-ATAC-A-AA
*
7700754 A-TACAAATTTAATT-ATAAAATA
1 ATTAC-AA--T-ATTCATACAA-A
7700776 ATTACAATATTCATA-AAA
1 ATTACAATATTCATACAAA
7700794 ATTTACAATATTCATACAAAAAA
1 A-TTACAATATTCATAC---AAA
*
7700817 ATTAGAATATTCATACAAA
1 ATTACAATATTCATACAAA
7700836 ATT
1 ATT
7700839 CTAATCCAAA
Statistics
Matches: 119, Mismatches: 8, Indels: 35
0.73 0.05 0.22
Matches are distributed among these distances:
17 3 0.03
18 9 0.08
19 49 0.41
20 10 0.08
21 2 0.02
22 35 0.29
23 9 0.08
25 2 0.02
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.32
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:7700825 original size:22 final size:22
Alignment explanation
Indices: 7700770--7700836 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 22
7700760 ATTTAATTAT
*
7700770 AAAATAATTACAATATTCAT--
1 AAAAAAATTACAATATTCATAC
*
7700790 -AAAAATTTACAATATTCATAC
1 AAAAAAATTACAATATTCATAC
*
7700811 AAAAAAATTAGAATATTCATAC
1 AAAAAAATTACAATATTCATAC
7700833 AAAA
1 AAAA
7700837 TTCTAATCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.43
22 23 0.57
ACGTcount: A:0.58, C:0.10, G:0.01, T:0.30
Consensus pattern (22 bp):
AAAAAAATTACAATATTCATAC
Found at i:7700881 original size:102 final size:100
Alignment explanation
Indices: 7700674--7700872 Score: 267
Period size: 102 Copynumber: 1.9 Consensus size: 100
7700664 AAATTATAAT
7700674 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAATTACAATATTCATACAAAATACT
1 ATTACAATATTCAT--AAAAAAATTACAATATTCATACAAAATTACAATATTCATACAAAATACT
* * *
7700739 AATCCAAAACTATAAATACAAATTTAATTATAAAATA
64 AATCCAAAACTATAAACACAAATATAATAATAAAATA
* * *
7700776 ATTACAATATTCAT-AAAAATTTACAATATTCATACAAAAAAATTAGAATATTCATACAAAATTC
1 ATTACAATATTCATAAAAAAATTACAATATTCATAC---AAAATTACAATATTCATACAAAATAC
7700840 TAATCC-AAACTATAAACACTAAATATAGATAAT
63 TAATCCAAAACTATAAACAC-AAATATA-ATAAT
7700873 TTATAATTAA
Statistics
Matches: 86, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
99 20 0.23
101 12 0.14
102 50 0.58
103 4 0.05
ACGTcount: A:0.55, C:0.14, G:0.01, T:0.31
Consensus pattern (100 bp):
ATTACAATATTCATAAAAAAATTACAATATTCATACAAAATTACAATATTCATACAAAATACTAA
TCCAAAACTATAAACACAAATATAATAATAAAATA
Found at i:7701693 original size:27 final size:27
Alignment explanation
Indices: 7701662--7701754 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
7701652 CGCCTATCTC
**
7701662 AGAGGCGCCAATGGTGGTGCC-TATCTG
1 AGAGGCGCCAATATTGGTGCCATA-CTG
* * *
7701689 GGAGGCGCCATTATTGGTGCCATACTA
1 AGAGGCGCCAATATTGGTGCCATACTG
*
7701716 AGAGGCGCCATTATTGGTGCCATACTG
1 AGAGGCGCCAATATTGGTGCCATACTG
7701743 AGAGGCGCCAAT
1 AGAGGCGCCAAT
7701755 GCTCTGATTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.96
28 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (27 bp):
AGAGGCGCCAATATTGGTGCCATACTG
Found at i:7701866 original size:22 final size:23
Alignment explanation
Indices: 7701813--7701866 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
7701803 TACAGAAACG
*
7701813 GAAGAAATAAGAAGGAAGGAAGCA
1 GAAGAAA-AAGAAGGAAGGAAGAA
7701837 GAAG-AAAAGAAGGAAGGAA-AA
1 GAAGAAAAAGAAGGAAGGAAGAA
7701858 GAAGAAAAA
1 GAAGAAAAA
7701867 AATAAGGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 17 0.61
23 2 0.07
24 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.31, T:0.02
Consensus pattern (23 bp):
GAAGAAAAAGAAGGAAGGAAGAA
Found at i:7701868 original size:24 final size:22
Alignment explanation
Indices: 7701813--7701873 Score: 61
Period size: 24 Copynumber: 2.7 Consensus size: 22
7701803 TACAGAAACG
*
7701813 GAAG-AAATAAGAAGGAAGGAA
1 GAAGAAAAAAAGAAGGAAGGAA
* *
7701834 GCAGAAGAAAAGAAGGAAGGAAAA
1 GAAGAAAAAAAGAAGGAAGG--AA
*
7701858 GAAGAAAAAAATAAGG
1 GAAGAAAAAAAGAAGG
7701874 TATTTTGGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 3 0.10
22 13 0.42
24 15 0.48
ACGTcount: A:0.64, C:0.02, G:0.31, T:0.03
Consensus pattern (22 bp):
GAAGAAAAAAAGAAGGAAGGAA
Found at i:7703052 original size:16 final size:15
Alignment explanation
Indices: 7703021--7703062 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
7703011 ACAAAATCAA
*
7703021 ATAAAATTTAATTAT
1 ATAAAAGTTAATTAT
7703036 ATAAAAGTTACATTAT
1 ATAAAAGTTA-ATTAT
*
7703052 ATAAAAATTAA
1 ATAAAAGTTAA
7703063 ATGAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
ATAAAAGTTAATTAT
Found at i:7703142 original size:39 final size:38
Alignment explanation
Indices: 7703099--7703181 Score: 139
Period size: 39 Copynumber: 2.2 Consensus size: 38
7703089 AAAAAGTCAG
*
7703099 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTTT
1 TTATAATTAAAATTTTAATAAAATGATTTTTAA-TTTTT
*
7703138 TTATAATTAAAATTTTAATGAAATGATTTTTAATTTTT
1 TTATAATTAAAATTTTAATAAAATGATTTTTAATTTTT
7703176 TTATAA
1 TTATAA
7703182 ATTTTATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 11 0.26
39 31 0.74
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (38 bp):
TTATAATTAAAATTTTAATAAAATGATTTTTAATTTTT
Done.