Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 28 of 216
Found at i:8011071 original size:2 final size:2
Alignment explanation
Indices: 8011064--8011105 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
8011054 ATCGGTATAT
*
8011064 TC TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8011106 AGCTCCTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8019507 original size:15 final size:15
Alignment explanation
Indices: 8019487--8019522 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8019477 TCAAAATCTT
* *
8019487 TTTTTTCTATATATA
1 TTTTTTATAGATATA
8019502 TTTTTTATAGATATA
1 TTTTTTATAGATATA
8019517 TTTTTT
1 TTTTTT
8019523 TACACAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTTTATAGATATA
Found at i:8026915 original size:105 final size:105
Alignment explanation
Indices: 8026792--8027004 Score: 245
Period size: 105 Copynumber: 2.0 Consensus size: 105
8026782 ACGGGTGTAC
** * *
8026792 AATAATAATTTTATATCTTGAAAATTTTATGATGTGTCGAA-ATTTT-ATTGGTGCCTAAAAACT
1 AATAATAATTTTATATCTTGAAAATTGGATAATGTGAC-AATATTTTAATT-GTGCCTAAAAACT
* *
8026855 ATAG-TTTTTAGTATCATACTAATATAAATTATTCTCATATAT
64 AT-GCTTTTTAGAATCATACTAATATAAATTATTCCCATATAT
* *
8026897 AATAATACTTTGT-TATCTTTAAAATTGGATAATGTGACAATATTTTAATTGTGCCTAAAAACTA
1 AATAATAATTT-TATATCTTGAAAATTGGATAATGTGACAATATTTTAATTGTGCCTAAAAACTA
* * * * *
8026961 TGCTTTTTAGAATTATCCTGATATAAGTTATTCCCATATTT
65 TGCTTTTTAGAATCATACTAATATAAATTATTCCCATATAT
8027002 AAT
1 AAT
8027005 TGCATCTCCT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
104 3 0.03
105 84 0.92
106 4 0.04
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (105 bp):
AATAATAATTTTATATCTTGAAAATTGGATAATGTGACAATATTTTAATTGTGCCTAAAAACTAT
GCTTTTTAGAATCATACTAATATAAATTATTCCCATATAT
Found at i:8031432 original size:125 final size:126
Alignment explanation
Indices: 8031211--8031450 Score: 374
Period size: 125 Copynumber: 1.9 Consensus size: 126
8031201 TATCAAATTA
*
8031211 TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGTAAA
1 TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGCAAA
8031276 AGCACGTCCACGTGAGCACGATTTTAGAAATTCTTCTAATAAAGCATCTTGCTTGAAGCAT
66 AGCACGTCCACGTGAGCACGATTTTAGAAATTCTTCTAATAAAGCATCTTGCTTGAAGCAT
** * * *
8031337 TTTTTTATACTATTTTCTCGGAAACGTCAACTTGAAATTA-TTTTTCAGGACCAACTGTAGCAAA
1 TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGCAAA
* * * * *
8031401 AGCGCGTCCTCGTGGGCGCGATTTTAGAAATTCTTCTGATAAAGCATCTT
66 AGCACGTCCACGTGAGCACGATTTTAGAAATTCTTCTAATAAAGCATCTT
8031451 AAACCCGAAA
Statistics
Matches: 103, Mismatches: 11, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
125 67 0.65
126 36 0.35
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (126 bp):
TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGCAAA
AGCACGTCCACGTGAGCACGATTTTAGAAATTCTTCTAATAAAGCATCTTGCTTGAAGCAT
Found at i:8031545 original size:21 final size:22
Alignment explanation
Indices: 8031502--8031547 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
8031492 TTTTCTCTAA
* *
8031502 AACCCTAAAAACCTTAAACCCT
1 AACCCTAAAAACCTCAAAACCT
*
8031524 AACCTTAAAAA-CTCAAAACCT
1 AACCCTAAAAACCTCAAAACCT
8031545 AAC
1 AAC
8031548 GGTGGAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (22 bp):
AACCCTAAAAACCTCAAAACCT
Found at i:8031981 original size:17 final size:19
Alignment explanation
Indices: 8031955--8031989 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8031945 CACTCCCACT
8031955 TTTTTCGG-TTTTACTTTA
1 TTTTTCGGTTTTTACTTTA
8031973 TTTTT-GGTTTTTACTTT
1 TTTTTCGGTTTTTACTTT
8031990 TAAAAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.09, C:0.09, G:0.11, T:0.71
Consensus pattern (19 bp):
TTTTTCGGTTTTTACTTTA
Found at i:8032614 original size:3 final size:3
Alignment explanation
Indices: 8032606--8032641 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
8032596 CAAACCTTTG
* *
8032606 TCT TCT TCT TCT TCT TCC TCT TCT TCT CCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
8032642 GCTGTGTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
TCT
Found at i:8034008 original size:11 final size:10
Alignment explanation
Indices: 8033994--8034092 Score: 87
Period size: 11 Copynumber: 9.5 Consensus size: 10
8033984 AAAAATTAAA
8033994 AAAAGTATTTT
1 AAAA-TATTTT
8034005 AAAAATATTTT
1 -AAAATATTTT
8034016 GAAAATATTTT
1 -AAAATATTTT
***
8034027 AAAAT-TAAA
1 AAAATATTTT
8034036 AAAAGTATTTTT
1 AAAA-TA-TTTT
8034048 AAAATATTTT
1 AAAATATTTT
8034058 -AAA-ATTTT
1 AAAATATTTT
8034066 AAAATTATTTTT
1 AAAA-TA-TTTT
8034078 AAAATATTTT
1 AAAATATTTT
8034088 AAAAT
1 AAAAT
8034093 TAAAAAAATT
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
8 5 0.07
9 11 0.15
10 19 0.26
11 21 0.29
12 17 0.23
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (10 bp):
AAAATATTTT
Found at i:8034043 original size:42 final size:39
Alignment explanation
Indices: 8033985--8034072 Score: 140
Period size: 42 Copynumber: 2.2 Consensus size: 39
8033975 AAAAATTAAA
8033985 AAAATTAAAAAAAGTATTTTAAAAATATTTTGAAAATATTTT
1 AAAATTAAAAAAAGTATTTTAAAAATATTTT--AAA-ATTTT
*
8034027 AAAATTAAAAAAAGTATTTTTAAAATATTTTAAAATTTT
1 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTT
8034066 AAAATTA
1 AAAATTA
8034073 TTTTTAAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
39 12 0.27
40 3 0.07
42 30 0.67
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (39 bp):
AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTT
Found at i:8034052 original size:31 final size:30
Alignment explanation
Indices: 8034005--8034101 Score: 149
Period size: 30 Copynumber: 3.2 Consensus size: 30
8033995 AAAGTATTTT
*
8034005 AAAAATATTTTGAAAATATTTTAAAATTAA
1 AAAAATATTTTTAAAATATTTTAAAATTAA
**
8034035 AAAAAGTATTTTTAAAATATTTTAAAATTTT
1 AAAAA-TATTTTTAAAATATTTTAAAATTAA
*
8034066 AAAATTATTTTTAAAATATTTTAAAATTAA
1 AAAAATATTTTTAAAATATTTTAAAATTAA
8034096 AAAAAT
1 AAAAAT
8034102 TAAAAAATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
30 33 0.56
31 26 0.44
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (30 bp):
AAAAATATTTTTAAAATATTTTAAAATTAA
Found at i:8034114 original size:61 final size:62
Alignment explanation
Indices: 8034000--8034120 Score: 156
Period size: 61 Copynumber: 2.0 Consensus size: 62
8033990 TAAAAAAAGT
****
8034000 ATTTTAAAAATATTTTGAAAATATTTTAAAATTAAAAAAAGTATTTTTAAAATAT-TTTAAA
1 ATTTTAAAAATATTTTGAAAATATTTTAAAATTAAAAAAAGTAAAAATAAAATATATTTAAA
* * *
8034061 ATTTTAAAATTATTTTTAAAATATTTTAAAATTAAAAAAATTAAAAA-ATAAATATATTTA
1 ATTTTAAAAATATTTTGAAAATATTTTAAAATTAAAAAAAGTAAAAATA-AAATATATTTA
8034121 TTATATCGGG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 1 0.02
61 46 0.90
62 4 0.08
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (62 bp):
ATTTTAAAAATATTTTGAAAATATTTTAAAATTAAAAAAAGTAAAAATAAAATATATTTAAA
Found at i:8037954 original size:3 final size:3
Alignment explanation
Indices: 8037946--8037972 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8037936 TTATATTTTT
8037946 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
8037973 CAAAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8039075 original size:17 final size:17
Alignment explanation
Indices: 8039049--8039082 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8039039 AATTTAATTT
*
8039049 ATATATTTTAATTTTTA
1 ATATAATTTAATTTTTA
*
8039066 ATATAATTTAGTTTTTA
1 ATATAATTTAATTTTTA
8039083 TATTTTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATATAATTTAATTTTTA
Found at i:8039136 original size:17 final size:18
Alignment explanation
Indices: 8039097--8039137 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
8039087 TTTATAATAT
*
8039097 TTTTAATTAATTTAAACA
1 TTTTAATAAATTTAAACA
*
8039115 -GTTAATAAATTT-AACA
1 TTTTAATAAATTTAAACA
8039131 TTTTAAT
1 TTTTAAT
8039138 TAAAATGTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (18 bp):
TTTTAATAAATTTAAACA
Found at i:8040437 original size:24 final size:23
Alignment explanation
Indices: 8040410--8040456 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8040400 TTCAGAAATT
8040410 ATAA-AAAAATCTATTTTTTATAAA
1 ATAATAAAAAT-TA-TTTTTATAAA
*
8040434 ATAATAAATATTATTTTTATAAA
1 ATAATAAAAATTATTTTTATAAA
8040457 TACCAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 10 0.48
24 6 0.29
25 5 0.24
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATAAAAATTATTTTTATAAA
Found at i:8040457 original size:22 final size:23
Alignment explanation
Indices: 8040424--8040470 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
8040414 AAAAATCTAT
*
8040424 TTTTTATAAAATAATAAATATTA
1 TTTTTATAAAATAACAAATATTA
*
8040447 TTTTTAT-AAATACCAAATATTA
1 TTTTTATAAAATAACAAATATTA
8040469 TT
1 TT
8040471 ATTGATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTTTATAAAATAACAAATATTA
Found at i:8047122 original size:22 final size:21
Alignment explanation
Indices: 8047058--8047144 Score: 86
Period size: 21 Copynumber: 4.0 Consensus size: 21
8047048 GAATATATAG
* *
8047058 AATAATACATAATAAATTTGAA
1 AATAATATATGATAAATTT-AA
* * *
8047080 GAATGATACATGA-AAACTTAA
1 -AATAATATATGATAAATTTAA
8047101 AATAATTATATGATAAATTTAA
1 AATAA-TATATGATAAATTTAA
*
8047123 AATAATATGTGATAAATTTAA
1 AATAATATATGATAAATTTAA
8047144 A
1 A
8047145 CAACATTCAT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
20 4 0.07
21 24 0.44
22 17 0.31
23 10 0.18
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.33
Consensus pattern (21 bp):
AATAATATATGATAAATTTAA
Found at i:8048144 original size:20 final size:20
Alignment explanation
Indices: 8048111--8048149 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8048101 GAATCCCCCT
* * *
8048111 TTTTTTTCTTATTTTCTCTA
1 TTTTTCTCTAATTTGCTCTA
8048131 TTTTTCTCTAATTTGCTCT
1 TTTTTCTCTAATTTGCTCT
8048150 CGATTTCTGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.10, C:0.18, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTTTCTCTAATTTGCTCTA
Found at i:8050689 original size:18 final size:20
Alignment explanation
Indices: 8050654--8050695 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
8050644 CCCATAATGA
*
8050654 TGAAGATTTTGATCATGACGT
1 TGAAGATTTTGA-CATGACCT
8050675 TGAAGATTTT-A-ATGACCT
1 TGAAGATTTTGACATGACCT
8050693 TGA
1 TGA
8050696 TCTTGGTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.45
20 1 0.05
21 10 0.50
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (20 bp):
TGAAGATTTTGACATGACCT
Found at i:8052122 original size:12 final size:12
Alignment explanation
Indices: 8052105--8052134 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8052095 ACAATATCAT
*
8052105 AATAATCCTAAC
1 AATAATCCTAAA
8052117 AATAATCCTAAA
1 AATAATCCTAAA
8052129 AATAAT
1 AATAAT
8052135 ATTAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAATCCTAAA
Found at i:8058959 original size:11 final size:11
Alignment explanation
Indices: 8058943--8058986 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
8058933 AAAAGTGCAG
8058943 AGAAAAACTAA
1 AGAAAAACTAA
*
8058954 AGAAAACCTAA
1 AGAAAAACTAA
8058965 AG-AAAACTAA
1 AGAAAAACTAA
*
8058975 ACCAAAAACTAA
1 A-GAAAAACTAA
8058987 GCTAATATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 8 0.29
11 12 0.43
12 8 0.29
ACGTcount: A:0.68, C:0.16, G:0.07, T:0.09
Consensus pattern (11 bp):
AGAAAAACTAA
Found at i:8079796 original size:18 final size:20
Alignment explanation
Indices: 8079765--8079804 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
8079755 AAACAGAAAA
8079765 TTTTAGCCTCAAAAATA-TT
1 TTTTAGCCTCAAAAATACTT
8079784 TTTTAGCCT-AAAAATACTT
1 TTTTAGCCTCAAAAATACTT
8079803 TT
1 TT
8079805 GAGAAGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (20 bp):
TTTTAGCCTCAAAAATACTT
Found at i:8099924 original size:20 final size:19
Alignment explanation
Indices: 8099886--8099953 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
8099876 CATAATTAGA
* * *
8099886 AAAATGATTAAATCTAGTT
1 AAAATGTTTCAATCAAGTT
*
8099905 AAAATGGTTTCAATTAAGTT
1 AAAAT-GTTTCAATCAAGTT
*
8099925 AAACAT-TTTCAATCATGTT
1 AAA-ATGTTTCAATCAAGTT
8099944 AAAATTGTTT
1 AAAA-TGTTT
8099954 TTTAAACAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
18 1 0.03
19 20 0.51
20 16 0.41
21 2 0.05
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (19 bp):
AAAATGTTTCAATCAAGTT
Found at i:8101701 original size:25 final size:25
Alignment explanation
Indices: 8101673--8101737 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
8101663 TTAGCTCTCA
8101673 TGAGCTTCCTGTTAAATGGTTCTTG
1 TGAGCTTCCTGTTAAATGGTTCTTG
*
8101698 TGAGCTTCCCGTTAAATGGTTCTTG
1 TGAGCTTCCTGTTAAATGGTTCTTG
*
8101723 TTAGCTTCCTGTTAA
1 TGAGCTTCCTGTTAA
8101738 TAGCTTTTCG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.18, G:0.22, T:0.43
Consensus pattern (25 bp):
TGAGCTTCCTGTTAAATGGTTCTTG
Found at i:8101842 original size:25 final size:25
Alignment explanation
Indices: 8101774--8101867 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 25
8101764 AGGCTCTTTT
** *
8101774 ATGAGCTTCCCGATAT-TGGCTCGC
1 ATGAGCTTCCCCTTATATGGCTCAC
** * *
8101798 ATGAGCTTTTCGTTACATGGCTCAC
1 ATGAGCTTCCCCTTATATGGCTCAC
*
8101823 ATGAGCTTCCCCTTATATGGCTTGA-
1 ATGAGCTTCCCCTTATATGGC-TCAC
*
8101848 AAGAGCTTCCCCTTTATATG
1 ATGAGCTTCCCC-TTATATG
8101868 CTTGTATGAG
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
24 12 0.21
25 35 0.62
26 9 0.16
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCCCCTTATATGGCTCAC
Found at i:8101883 original size:26 final size:25
Alignment explanation
Indices: 8101823--8101884 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
8101813 CATGGCTCAC
8101823 ATGAGCTTCCCCTTATATGGCTTGA
1 ATGAGCTTCCCCTTATATGGCTTGA
* *
8101848 AAGAGCTTCCCCTTTATAT-GCTTGT
1 ATGAGCTTCCCC-TTATATGGCTTGA
8101873 ATGAGCATTCCC
1 ATGAGC-TTCCC
8101885 GAATATGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 21 0.66
26 11 0.34
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCCTTATATGGCTTGA
Found at i:8102557 original size:14 final size:15
Alignment explanation
Indices: 8102525--8102557 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8102515 AATGATAATG
*
8102525 TATGATTTGAGATAA
1 TATGATTAGAGATAA
8102540 TATGATTAGAGA-AA
1 TATGATTAGAGATAA
8102554 TATG
1 TATG
8102558 CATATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (15 bp):
TATGATTAGAGATAA
Found at i:8102663 original size:125 final size:126
Alignment explanation
Indices: 8102437--8102689 Score: 445
Period size: 125 Copynumber: 2.0 Consensus size: 126
8102427 GAGTTAGACA
8102437 TATTTTGATATGTATATGTATGTGTGGCTTAATACGTTTGTTGTGTTTAATGTGGTTGAGTAATG
1 TATTTTGATATGTATATGTATGTGTGGCTTAATA---TTGTTGTGTTTAATGTGGTTGAGTAATG
8102502 GATAATTTATGAAAATGATAATGTATGATTTGAGATAATATGATTAGAGAAATATGCATATAAT
63 GATAATTTATGAAAATGATAATGTATGATTTGAGATAATATGATTAGAGAAATATGCATATAAT
8102566 TATTTTGATATGTATATGTATGTGTGGCTTAATA-TGTTGTGTTTAATGTGGTTGAGTAATGGAT
1 TATTTTGATATGTATATGTATGTGTGGCTTAATATTGTTGTGTTTAATGTGGTTGAGTAATGGAT
* * *
8102630 AATTTATGAATATGATAATGTATTATTTGAGATAATATGATTGGAGAAATATGCATATAA
66 AATTTATGAAAATGATAATGTATGATTTGAGATAATATGATTAGAGAAATATGCATATAA
8102690 GTTTATATGG
Statistics
Matches: 121, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
125 87 0.72
129 34 0.28
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (126 bp):
TATTTTGATATGTATATGTATGTGTGGCTTAATATTGTTGTGTTTAATGTGGTTGAGTAATGGAT
AATTTATGAAAATGATAATGTATGATTTGAGATAATATGATTAGAGAAATATGCATATAAT
Found at i:8103160 original size:30 final size:30
Alignment explanation
Indices: 8103122--8103180 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
8103112 TTGATTTTTC
*
8103122 AATAATAATTAATACCAAGT-AAAATATAA
1 AATAATAATTAATACCAAATAAAAATATAA
8103151 AATATATAATTAATACCAAATAAAAATATA
1 AATA-ATAATTAATACCAAATAAAAATATA
8103181 GTATTACATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 4 0.15
30 15 0.56
31 8 0.30
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.29
Consensus pattern (30 bp):
AATAATAATTAATACCAAATAAAAATATAA
Found at i:8106294 original size:16 final size:18
Alignment explanation
Indices: 8106273--8106310 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8106263 TATAATTTGA
8106273 TAATTA-AG-ATTTTTTT
1 TAATTATAGAATTTTTTT
*
8106289 TAATTATTGAATTTTTTT
1 TAATTATAGAATTTTTTT
8106307 TAAT
1 TAAT
8106311 AATCTCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 1 0.05
18 12 0.63
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (18 bp):
TAATTATAGAATTTTTTT
Found at i:8108573 original size:59 final size:59
Alignment explanation
Indices: 8108481--8108594 Score: 219
Period size: 59 Copynumber: 1.9 Consensus size: 59
8108471 TTTTTCGAAT
*
8108481 CAAATCGAGTTTTGCTCTCTCCTACCCAACCCATAAATAATAGGGTAACGCGCTTAAAC
1 CAAATCGAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTTAAAC
8108540 CAAATCGAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTT
1 CAAATCGAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTT
8108595 CAACACACTC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (59 bp):
CAAATCGAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTTAAAC
Found at i:8127587 original size:21 final size:19
Alignment explanation
Indices: 8127571--8127622 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
8127561 TAAAATTATG
8127571 AACCTTAAATCCTAAATCTT
1 AACCTTAAATCCTAAAT-TT
* *
8127591 AAATCTTAAACCCTAAATTCT
1 -AACCTTAAATCCTAAATT-T
8127612 AACTCTTAAAT
1 AAC-CTTAAAT
8127623 TTAGAGTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (19 bp):
AACCTTAAATCCTAAATTT
Found at i:8127588 original size:28 final size:28
Alignment explanation
Indices: 8127534--8127594 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
8127524 TCCTGAACTC
* * *
8127534 AAAATTCTGAACCCCAAATCTTGAATCT
1 AAAATTATGAACCCCAAATCCTAAATCT
**
8127562 AAAATTATGAACCTTAAATCCTAAATCT
1 AAAATTATGAACCCCAAATCCTAAATCT
*
8127590 TAAAT
1 AAAAT
8127595 CTTAAACCCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (28 bp):
AAAATTATGAACCCCAAATCCTAAATCT
Found at i:8131584 original size:24 final size:24
Alignment explanation
Indices: 8131548--8131605 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
8131538 CACCTTTGAA
*
8131548 ACCCTTTCCACAGCTCATCTCTTC
1 ACCCTTTCGACAGCTCATCTCTTC
*
8131572 ACCCTTTCGACAGCTCCTCTCTTC
1 ACCCTTTCGACAGCTCATCTCTTC
*
8131596 ACCCTATCGA
1 ACCCTTTCGA
8131606 TTGCAGCATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.17, C:0.45, G:0.07, T:0.31
Consensus pattern (24 bp):
ACCCTTTCGACAGCTCATCTCTTC
Found at i:8134947 original size:20 final size:20
Alignment explanation
Indices: 8134922--8134961 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8134912 AATATTTTTC
*
8134922 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
8134942 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
8134962 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:8134963 original size:34 final size:35
Alignment explanation
Indices: 8134910--8134976 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8134900 GAAACACCAG
* *
8134910 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
8134945 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
8134977 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8134968 original size:14 final size:14
Alignment explanation
Indices: 8134945--8134984 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8134935 ACAGAAAAGT
*
8134945 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
8134959 AAATCATTTTACGG
1 AAAACATTTTACAG
8134973 AAAACATTTTAC
1 AAAACATTTTAC
8134985 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:8136577 original size:19 final size:19
Alignment explanation
Indices: 8136553--8136590 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8136543 ATTCATATCC
8136553 AAAACCAATCATATTCAAT
1 AAAACCAATCATATTCAAT
8136572 AAAACCAATCATATTCAAT
1 AAAACCAATCATATTCAAT
8136591 CATATTGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAACCAATCATATTCAAT
Found at i:8138529 original size:16 final size:16
Alignment explanation
Indices: 8138494--8138528 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8138484 GCTTTGGGAT
8138494 AAAAGTGTAATTTTTG
1 AAAAGTGTAATTTTTG
*
8138510 AAAAGT-TATTTTTTG
1 AAAAGTGTAATTTTTG
8138525 AAAA
1 AAAA
8138529 ATGGGGATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (16 bp):
AAAAGTGTAATTTTTG
Found at i:8144045 original size:235 final size:235
Alignment explanation
Indices: 8143620--8144087 Score: 801
Period size: 235 Copynumber: 2.0 Consensus size: 235
8143610 CTTTTGCACT
*
8143620 TTATACAATTTGGTCCTTACTAACAATTAAACATGAAATCGATAAAATTTTCTTGTCAAAATTTT
1 TTATACAATTTGGTCCTTACTAACAATTAAACATGAAATCGATAAAATTTTCTTATCAAAATTTT
*
8143685 CATACGTCTTTCCTATTATAATGCATACCATAAAATAATATTAAAATAATTTTTCTTTATGACAC
66 CATACGTCTTTCCTATTATAATGCAGACCATAAAATAATATTAAAATAATTTTTCTTTATGACAC
* *
8143750 AGATTTGTGATCTCGAAAATACTATTCCAATTTCACTAAAAATGGGCTATTACATCACTTGTCTC
131 AGATTTGTGATCTCGAAAACAATATTCCAATTTCACTAAAAATGGGCTATTACATCACTTGTCTC
* *
8143815 TCGTGATTAAAAAAATAGATTTTTCTTAATGGGTTGATAA
196 TCGTGATTAAAAAAATAAAATTTTCTTAATGGGTTGATAA
* * * *
8143855 TTATGCAATTTGGTCTTTGCTAACAATTAAACATGAAATCGGTAAAATTTTCTTATCAAAATTTT
1 TTATACAATTTGGTCCTTACTAACAATTAAACATGAAATCGATAAAATTTTCTTATCAAAATTTT
*
8143920 CATACGTCTTTCCTATTATAATGCAGACCATAAAATAATATTAAAATAATTTTTCTTTATGACTC
66 CATACGTCTTTCCTATTATAATGCAGACCATAAAATAATATTAAAATAATTTTTCTTTATGACAC
* * * *
8143985 AGATTTGTGATCTCGAAACCAATATTCCAATTTCACTGAAAATGGGCTGTTACGTCACTTGTCTC
131 AGATTTGTGATCTCGAAAACAATATTCCAATTTCACTAAAAATGGGCTATTACATCACTTGTCTC
8144050 TCGTGATTAAAAAAATAAAATTTTCTTAATGGGTTGAT
196 TCGTGATTAAAAAAATAAAATTTTCTTAATGGGTTGAT
8144088 GAGTTATATT
Statistics
Matches: 218, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
235 218 1.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (235 bp):
TTATACAATTTGGTCCTTACTAACAATTAAACATGAAATCGATAAAATTTTCTTATCAAAATTTT
CATACGTCTTTCCTATTATAATGCAGACCATAAAATAATATTAAAATAATTTTTCTTTATGACAC
AGATTTGTGATCTCGAAAACAATATTCCAATTTCACTAAAAATGGGCTATTACATCACTTGTCTC
TCGTGATTAAAAAAATAAAATTTTCTTAATGGGTTGATAA
Found at i:8151054 original size:12 final size:13
Alignment explanation
Indices: 8151037--8151065 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8151027 TCTTAGTTTT
8151037 TTAATTAATT-AA
1 TTAATTAATTAAA
8151049 TTAATTAATTAAA
1 TTAATTAATTAAA
8151062 TTAA
1 TTAA
8151066 AGTGATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAATTAATTAAA
Found at i:8161889 original size:18 final size:17
Alignment explanation
Indices: 8161847--8161890 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
8161837 AATGACTGCA
8161847 TAAATTTTTTTAAAATT
1 TAAATTTTTTTAAAATT
* *
8161864 TGATTTTTTTTAATAATT
1 TAAATTTTTTTAA-AATT
8161882 TAAATTTTT
1 TAAATTTTT
8161891 GTTATTGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TAAATTTTTTTAAAATT
Found at i:8170007 original size:11 final size:11
Alignment explanation
Indices: 8169991--8170016 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8169981 AAACACACAC
8169991 AAAAAAAGAAA
1 AAAAAAAGAAA
8170002 AAAAAAAGAAA
1 AAAAAAAGAAA
8170013 AAAA
1 AAAA
8170017 GAGGAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:8170027 original size:19 final size:20
Alignment explanation
Indices: 8169991--8170032 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
8169981 AAACACACAC
8169991 AAAAAAAGAAAAAAAAAA-G
1 AAAAAAAGAAAAAAAAAATG
** *
8170010 AAAAAAAGAGGAAGAAAATG
1 AAAAAAAGAAAAAAAAAATG
8170030 AAA
1 AAA
8170033 GAGGAAAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (20 bp):
AAAAAAAGAAAAAAAAAATG
Found at i:8171302 original size:221 final size:220
Alignment explanation
Indices: 8170834--8171570 Score: 631
Period size: 221 Copynumber: 3.4 Consensus size: 220
8170824 GGCAAACAAA
* * * ** *
8170834 AGAATAAATAAACATAGCTTGCCAACTGAATTTAACAATTTATTGATCACATTCATGGTTCAGAT
1 AGAATAAATGAACATAGCTTGCTAACTGAATTTTACAATTTATTGATCAGGTTCATGGTTCAGAG
* * * * * ** * ** *
8170899 TATGACATC-GTGTTTTATGTGTTGATATTGGTCCTTACTGATTTTAACAACAATTATGTATTGA
66 TCTGACATCAATGCTTTATGCGTTG----T--TCCTTATTGAACTTAACAGCTGTTATGTGTTGA
* * ** * * * * *
8170963 TACGAGAGAGTGCATTGTTGAGATTACCT--GAGGCAAT--A---AGGTTTAGGCAAAATGGTAT
125 TACGAGAGAATGAATCCTTAAGATTACCTGAGAGGGAATGAATTTAAGTTTAGGCAAAATGATAC
* * * * * *
8171021 TCGAATTGTATTAACAGG---GAAAAGAGA-
190 CCGGATTGTATTACCAGGAAAAAAAAAAAAT
* *
8171048 AGAATAAATAAACATAGCTTGCCAACTGAATTTTACAATTTATTGATCAGGTTCATGGTTCAGAG
1 AGAATAAATGAACATAGCTTGCTAACTGAATTTTACAATTTATTGATCAGGTTCATGGTTCAGAG
* *
8171113 TACT-ACATCAATGCTTTATTG-GTTAG-TCCTTATTGAATTTAACAGCTGTTATGTGTTGATGC
66 T-CTGACATCAATGCTTTA-TGCGTT-GTTCCTTATTGAACTTAACAGCTGTTATGTGTTGATAC
* *
8171175 GAGAGAATGCATCCTTAAGATTACCTGACGGGGGAGA-GAA-TTAAGTTTAGGCAAAATGATACC
128 GAGAGAATGAATCCTTAAGATTACCTGA-GAGGGA-ATGAATTTAAGTTTAGGCAAAATGATACC
*
8171238 TGGATTGTATTACCAGGAAAAGAAAAAAAAT
191 CGGATTGTATTACCAGGAAAA-AAAAAAAAT
* * *
8171269 AGAATAAATGAACATAGCTTGCTAACCGAATTTTAACAGTTTATAGA-CAGGTTCATGGTTCAGA
1 AGAATAAATGAACATAGCTTGCTAACTGAATTTT-ACAATTTATTGATCAGGTTCATGGTTCAGA
* **
8171333 GTCTGACATCTATGCTTTATGCGTTGTTCCTTATTGAACTTGGCAGCTGTTATGTGTTGATACGA
65 GTCTGACATCAATGCTTTATGCGTTGTTCCTTATTGAACTTAACAGCTGTTATGTGTTGATACGA
* * *
8171398 GAGAGTGAATCCTTAATATTACCTGAGAGGGAATTAAGTTTTAAGTTTAGGCAAAATGATACCCG
130 GAGAATGAATCCTTAAGATTACCTGAGAGGGAATGAA--TTTAAGTTTAGGCAAAATGATACCCG
** * *
8171463 GATTGTATTTTCAGGAAAAAACAAGAAT
193 GATTGTATTACCAGGAAAAAAAAAAAAT
* * * *
8171491 A-AAT-AA-G--CATA-CTTACTGACTGAATTGTAACATTTTATTGATCAGGTTCATGGTTCAGA
1 AGAATAAATGAACATAGCTTGCTAACTGAATT-TTACAATTTATTGATCAGGTTCATGGTTCAGA
* **
8171550 GTCAGACATTGATGCTTTATG
65 GTCTGACATCAATGCTTTATG
8171571 TGTCGGTCCT
Statistics
Matches: 437, Mismatches: 59, Indels: 51
0.80 0.11 0.09
Matches are distributed among these distances:
209 51 0.12
212 4 0.01
213 1 0.00
214 68 0.16
215 10 0.02
216 56 0.13
217 40 0.09
219 2 0.00
220 20 0.05
221 126 0.29
222 18 0.04
223 41 0.09
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (220 bp):
AGAATAAATGAACATAGCTTGCTAACTGAATTTTACAATTTATTGATCAGGTTCATGGTTCAGAG
TCTGACATCAATGCTTTATGCGTTGTTCCTTATTGAACTTAACAGCTGTTATGTGTTGATACGAG
AGAATGAATCCTTAAGATTACCTGAGAGGGAATGAATTTAAGTTTAGGCAAAATGATACCCGGAT
TGTATTACCAGGAAAAAAAAAAAAT
Found at i:8179658 original size:220 final size:217
Alignment explanation
Indices: 8179246--8179766 Score: 585
Period size: 220 Copynumber: 2.4 Consensus size: 217
8179236 ACCGACACAA
* * ** *
8179246 AAAGCATCGATGTCTA-ACTTTGAACCATGAACTTGATCAATAAAATGTTACAATTCAGTCAGTA
1 AAAGCATCGATGTC-AGACTTTGAACCATGAACTTG-TCAATAAAATGTTAAAATTTAGTTGGCA
* * * * *
8179310 AG-TAAGCTTATTTATTC-TTGTTTTTTTCGTGGAAATATAATCCGGGTATCATTCTGCCTAAAC
64 AGCTATG-TTATTTATTCTTTGTTTTTTTCCTAGAAATACAATCCAGGTATCATTCTGCCTAAAC
* * * *
8179373 TTAAAACTTAATTCCCTCCCAGGTAATCTTAAGGATTCATTATCTCGTATCAACACGTAACAGCT
128 TT-AAACTTAATTCCCCCCCAGGTAATCTTAAGGATGCATTATCTCGCATCAACACATAACAGCT
*
8179438 GCCAAGTTCAGTAATGAAC-AA-CGCAT
192 GCCAAATTCAGTAA-GAACTAACCG-AT
*
8179464 AAAGCATAGATGTCAGACTTTGAACCATGAACTTGTCAATAAAATGTTAAAATTTAGTTGGCAAG
1 AAAGCATCGATGTCAGACTTTGAACCATGAACTTGTCAATAAAATGTTAAAATTTAGTTGGCAAG
* * *
8179529 CTATGTTCATTTATTCTATTTTTTTCTTTTCCTAGTAATACAATCCAGGTATCATTTTGCCTAAA
66 CTATGTT-ATTTATTC--TTTGTTT-TTTTCCTAGAAATACAATCCAGGTATCATTCTGCCTAAA
* *
8179594 CTT-AA-TT-CTCTCCCCCGCCAGGTAATCTTAAGGATGCATTCTCTCGCATCAACACATAACAG
127 CTTAAACTTAAT-TCCCCC-CCAGGTAATCTTAAGGATGCATTATCTCGCATCAACACATAACAG
** *
8179656 CTGTTAAATTCAGTAAGGACTAACCGAT
190 CTGCCAAATTCAGTAAGAACTAACCGAT
** * *
8179684 AAAGCATCGATGT-AGTACTTTGAACCATGAACCTAATCAATAAATTG-TAAAATTTAGTTGACA
1 AAAGCATCGATGTCAG-ACTTTGAACCATGAA-CTTGTCAATAAAATGTTAAAATTTAGTTGGCA
8179747 AGCTATGTTTATTTATTCTT
64 AGCTATG-TTATTTATTCTT
8179767 CTCTTTTCCC
Statistics
Matches: 260, Mismatches: 29, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
217 28 0.11
218 46 0.18
219 12 0.05
220 117 0.45
221 21 0.08
222 36 0.14
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (217 bp):
AAAGCATCGATGTCAGACTTTGAACCATGAACTTGTCAATAAAATGTTAAAATTTAGTTGGCAAG
CTATGTTATTTATTCTTTGTTTTTTTCCTAGAAATACAATCCAGGTATCATTCTGCCTAAACTTA
AACTTAATTCCCCCCCAGGTAATCTTAAGGATGCATTATCTCGCATCAACACATAACAGCTGCCA
AATTCAGTAAGAACTAACCGAT
Found at i:8180185 original size:210 final size:208
Alignment explanation
Indices: 8179415--8180186 Score: 594
Period size: 215 Copynumber: 3.6 Consensus size: 208
8179405 GGATTCATTA
* ** ** * * * * *
8179415 TCTCGTATCAACACGTAACAGCTGCCAAGTTCAGTAATGAACAACGCATAAAGCATAGATGTCAG
1 TCTCGTATCAACACATAACAGCTGTTAAAATCAGTAAGGACCAACACGTAAAGCATCGATGT-AG
* * * *
8179480 -ACTTTGAACCATGAACTTG-TCAATAAAATGTTAAAATTTAGTTGGCAAGCTATGTTCATTTAT
65 TACTCTGAACCATGAACCTGATCAATAAATTG-T-AAATTTAGTTGGCAAGCTATGTTTATTTAT
* * ** * *
8179543 TCTAT-TTTTTTCTTTTCCTAGTAATACAA-TCCAGGTATCATTTTGCCTAAA-CTTAATTCTCT
128 TCT-TCTCTTTTC----CCTGGTAATACAATTTGA-ATACCATTTTGCCTAAACCTT-A---T-T
* * * ** * *
8179605 CCCCCGCCAGGTAATCTTAAGGATGCATTC
182 --CCC-TCACGTAATCTCAACAATGAACTC
* * *
8179635 TCTCGCATCAACACATAACAGCTGTTAAATTCAGTAAGGACTAAC-CGATAAAGCATCGATGTAG
1 TCTCGTATCAACACATAACAGCTGTTAAAATCAGTAAGGACCAACACG-TAAAGCATCGATGTAG
* * *
8179699 TACTTTGAACCATGAACCTAATCAATAAATTGTAAAATTTAGTTGACAAGCTATGTTTATTTATT
65 TACTCTGAACCATGAACCTGATCAATAAATTGT-AAATTTAGTTGGCAAGCTATGTTTATTTATT
* * * * *
8179764 CTTCTCTTTTCCCTGTTAATATAATTTGAGTACCATTTTGCCTAAACCTTATTGCCTCAGGTAAT
129 CTTCTCTTTTCCCTGGTAATACAATTTGAATACCATTTTGCCTAAACCTTATTCCCTCACGTAAT
*
8179829 CTCAACAATGCACTC
194 CTCAACAATGAACTC
* * *
8179844 TCTCGTATCAACACATAACTGCTGTTAAAATCAGTAAGGACCAAGATCAATACATAAAGCACCGA
1 TCTCGTATCAACACATAACAGCTGTTAAAATCAGTAAGGACC-A-A-C---ACGTAAAGCATCGA
* * *
8179909 TGTCGTACTCTGAACCATGAACTTGATCAATAAATTGTTAAATTTAGTTGGCAAGCTACGTTTAT
60 TGTAGTACTCTGAACCATGAACCTGATCAATAAATTG-TAAATTTAGTTGGCAAGCTATGTTTAT
* * * *
8179974 TTATTCTTTTGTTTTCCCTGGTAATACAATTTGAATACCGTTTTTCC-AGAACC-TACTTCCCTC
124 TTATTCTTCTCTTTTCCCTGGTAATACAATTTGAATACCATTTTGCCTA-AACCTTA-TTCCCT-
* **
8180037 CCACGTAGTCTCGAGTAA-GAACTC
186 -CACGTAATCTC-AACAATGAACTC
* * * * * * * *
8180061 TCTGGTATCAACACATAGCAGTTGTCAAAATGAGT-AGGACCAACACGTAAAGCATCAATGTTGG
1 TCTCGTATCAACACATAACAGCTGTTAAAATCAGTAAGGACCAACACGTAAAGCATCGATGTAGT
* * * *
8180125 ACTCTAAACCAAGAACCTGATC-ATCAATTTGATAAATTTAGTTGGCAAGCTATATTTATTTA
66 ACTCTGAACCATGAACCTGATCAAT-AAATTG-TAAATTTAGTTGGCAAGCTATGTTTATTTA
8180187 CCCTTTTCTC
Statistics
Matches: 461, Mismatches: 71, Indels: 50
0.79 0.12 0.09
Matches are distributed among these distances:
209 59 0.13
210 70 0.15
211 1 0.00
212 2 0.00
213 2 0.00
214 4 0.01
215 117 0.25
216 35 0.08
217 48 0.10
218 3 0.01
219 4 0.01
220 106 0.23
221 10 0.02
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (208 bp):
TCTCGTATCAACACATAACAGCTGTTAAAATCAGTAAGGACCAACACGTAAAGCATCGATGTAGT
ACTCTGAACCATGAACCTGATCAATAAATTGTAAATTTAGTTGGCAAGCTATGTTTATTTATTCT
TCTCTTTTCCCTGGTAATACAATTTGAATACCATTTTGCCTAAACCTTATTCCCTCACGTAATCT
CAACAATGAACTC
Found at i:8181825 original size:40 final size:40
Alignment explanation
Indices: 8181726--8181844 Score: 150
Period size: 39 Copynumber: 3.0 Consensus size: 40
8181716 TACACAAATG
**
8181726 ACCCGTGCATCGTATAAAAATACAAACTAATAATTATATA
1 ACCCGTGCATCGTATAAAAATACAAACTAGCAATTATATA
* * * * *
8181766 A-TCATGCATCGCATAAAAATATAAATTAGCAATTATATA
1 ACCCGTGCATCGTATAAAAATACAAACTAGCAATTATATA
* *
8181805 ACCCGTGCATCGTACAAAAATACAAACTAGCAACTATATA
1 ACCCGTGCATCGTATAAAAATACAAACTAGCAATTATATA
8181845 CCTTTTCACT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 32 0.50
40 32 0.50
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.26
Consensus pattern (40 bp):
ACCCGTGCATCGTATAAAAATACAAACTAGCAATTATATA
Found at i:8181943 original size:42 final size:42
Alignment explanation
Indices: 8181884--8181970 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
8181874 CAAACTAGAA
8181884 AATAGGCTTAAAATTTACATTTTTGTAATATCATATATAATT
1 AATAGGCTTAAAATTTACATTTTTGTAATATCATATATAATT
8181926 AATAGGCTTAAAATTTACATTTTTGTAATATCATATATAATT
1 AATAGGCTTAAAATTTACATTTTTGTAATATCATATATAATT
8181968 AAT
1 AAT
8181971 GAGTATTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (42 bp):
AATAGGCTTAAAATTTACATTTTTGTAATATCATATATAATT
Found at i:8182580 original size:10 final size:10
Alignment explanation
Indices: 8182565--8182589 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8182555 ATTTCTAATC
8182565 AATTTAACGG
1 AATTTAACGG
8182575 AATTTAACGG
1 AATTTAACGG
8182585 AATTT
1 AATTT
8182590 CTATTTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (10 bp):
AATTTAACGG
Found at i:8192405 original size:19 final size:19
Alignment explanation
Indices: 8192378--8192430 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
8192368 GTGCTTATGC
8192378 GCCAGGATGCACTTCGTGT
1 GCCAGGATGCACTTCGTGT
*
8192397 GCCAAGATGCACTTCGTGT
1 GCCAGGATGCACTTCGTGT
*
8192416 GTCAGGATGCACTTC
1 GCCAGGATGCACTTC
8192431 ATGCGCCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (19 bp):
GCCAGGATGCACTTCGTGT
Found at i:8195466 original size:46 final size:45
Alignment explanation
Indices: 8195344--8195667 Score: 355
Period size: 46 Copynumber: 7.5 Consensus size: 45
8195334 TACGTATGAT
*
8195344 CACTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAGGCTAC
* *
8195387 CACTTATCACTTTTTTTTATTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCAC--TTTTTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
*
8195435 CACTTATCACTTTTTCACTTGATCAAATAAGTGTAGCTGAGGCTAC
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
* *
8195481 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
*
8195527 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--TA-G----
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAGGCTAC
*
8195563 CACTTATCACCTTTTCACTTGATCAGATAA--GTA--TA-GC-A-
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAGGCTAC
*
8195601 -A-TTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
* *
8195645 CACTTATCACTTTATCTCTTGAT
1 CACTTATCACTTTTTCACTTGAT
8195668 TAGAAGTACT
Statistics
Matches: 248, Mismatches: 16, Indels: 31
0.84 0.05 0.11
Matches are distributed among these distances:
36 60 0.24
37 1 0.00
38 3 0.01
40 2 0.01
41 2 0.01
42 3 0.01
43 11 0.04
44 3 0.01
45 1 0.00
46 125 0.50
47 20 0.08
48 17 0.07
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (45 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAGGCTAC
Found at i:8195568 original size:36 final size:35
Alignment explanation
Indices: 8195527--8195635 Score: 173
Period size: 36 Copynumber: 3.0 Consensus size: 35
8195517 CTAAAGCTAC
8195527 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTT-TCACTTGATCAGATAAGTATAG
8195563 CACTTATCACCTTTTCACTTGATCAGATAAGTATAG
1 CACTTATCA-CTTTTCACTTGATCAGATAAGTATAG
* *
8195599 CAATTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCAC-TTTTCACTTGATCAGATAAGTATAG
8195635 C
1 C
8195636 TAAAGCTACC
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
35 1 0.01
36 64 0.93
37 4 0.06
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (35 bp):
CACTTATCACTTTTCACTTGATCAGATAAGTATAG
Found at i:8200696 original size:22 final size:22
Alignment explanation
Indices: 8200636--8200708 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
8200626 AAAAATTTCA
* *
8200636 ATAAATA-AAAAAAATAAAATT
1 ATAAATATTAAAAAATATAATT
*
8200657 ATTAATATTAAAATAATATAA-T
1 ATAAATATTAAAA-AATATAATT
* *
8200679 ATAAATATTTTAAAAATATATTT
1 ATAAATA-TTAAAAAATATAATT
8200702 A-AAATAT
1 ATAAATAT
8200709 AATATGGGCG
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 7 0.17
22 22 0.52
23 13 0.31
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
ATAAATATTAAAAAATATAATT
Found at i:8201185 original size:31 final size:31
Alignment explanation
Indices: 8201150--8201212 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
8201140 TGCATGCAAC
*
8201150 TGAATCAAAGTTAAAA-TTTCATGTGTACAAT
1 TGAATCAAA-ATAAAAGTTTCATGTGTACAAT
* *
8201181 TGAATCAAAATAAAAGTTTTATGTGTATAAT
1 TGAATCAAAATAAAAGTTTCATGTGTACAAT
8201212 T
1 T
8201213 ACACTATATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (31 bp):
TGAATCAAAATAAAAGTTTCATGTGTACAAT
Found at i:8202681 original size:20 final size:20
Alignment explanation
Indices: 8202656--8202704 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
8202646 TATAAAAAAA
8202656 TAATTTTACTAAAATTTATT
1 TAATTTTACTAAAATTTATT
8202676 TAATTTTACTAAAATTTATT
1 TAATTTTACTAAAATTTATT
8202696 TAATTTTAC
1 TAATTTTAC
8202705 ATGTTTCTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATTTTACTAAAATTTATT
Found at i:8203474 original size:6 final size:6
Alignment explanation
Indices: 8203463--8203487 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8203453 CTAATGTAAT
8203463 GATGAA GATGAA GATGAA GATGAA G
1 GATGAA GATGAA GATGAA GATGAA G
8203488 TACATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (6 bp):
GATGAA
Found at i:8205154 original size:19 final size:20
Alignment explanation
Indices: 8205130--8205167 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8205120 CTGCAATGTC
*
8205130 ATACAT-AAATTTTGATTTT
1 ATACATGAAATTCTGATTTT
8205149 ATACATGAAATTCTGATTT
1 ATACATGAAATTCTGATTT
8205168 GATTCCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (20 bp):
ATACATGAAATTCTGATTTT
Found at i:8206768 original size:15 final size:14
Alignment explanation
Indices: 8206750--8206795 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
8206740 AATAAATAAA
8206750 AAATATAATATTATT
1 AAATATAATATTA-T
8206765 AAATATTAA-ATTAT
1 AAATA-TAATATTAT
8206779 AAATATAAATATT-T
1 AAATAT-AATATTAT
8206793 AAA
1 AAA
8206796 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
13 1 0.04
14 12 0.43
15 12 0.43
16 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATAATATTAT
Found at i:8206803 original size:29 final size:29
Alignment explanation
Indices: 8206740--8206803 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
8206730 AAAAAATTTC
* *
8206740 AATAAATAAAAAATATAATATTATTAAAT
1 AATAAATAAAAAATATAATATTATAAAAA
* * *
8206769 ATTAAATTATAAATATAAATATT-TAAAAA
1 AATAAATAAAAAATAT-AATATTATAAAAA
8206798 AATAAA
1 AATAAA
8206804 AATAATATGA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (29 bp):
AATAAATAAAAAATATAATATTATAAAAA
Found at i:8212031 original size:16 final size:16
Alignment explanation
Indices: 8212010--8212040 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8212000 CATATTGCAG
8212010 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
8212026 CATATATATTTGAAA
1 CATATAAATTTGAAA
8212041 ACTTTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:8217942 original size:149 final size:152
Alignment explanation
Indices: 8217593--8217945 Score: 491
Period size: 152 Copynumber: 2.3 Consensus size: 152
8217583 TATTTGTTAC
* * * * * *
8217593 TTGTTGATACAATATCTAGAATTACCCATAGTCTCT-TCTCAATTCTTAAATAGGAGGACAATAC
1 TTGTTGATACAATATATAGAACTATCCATAGTCTCTCTC-CAAATCTTAAATAAGAGGACAACAC
* * *
8217657 CCATACCAATCGAGTTAAGACTCAACCGGCTTACATATATATAGTAAACTTTAATATGATCATTA
65 CCATACCAATCGAGCTAAGACTCAACCAGCTTACATATATATAGTAAACATTAATATGATCATTA
* *
8217722 TAAGTTCTTATCATATCTGCTCT
130 TAAGTTCTCATAATATCTGCTCT
* *
8217745 TTGTTGATACAATATATAGAACTATCCATAGTCTCTC-CCCAATCCTTAAATAAGAGGACAACAT
1 TTGTTGATACAATATATAGAACTATCCATAGTCTCTCTCCAAAT-CTTAAATAAGAGGACAACAC
* * * *
8217809 CTATACCAATCGAGCTAAGACTCAACCAGTTTACATATATATATTAAACATT-A-AT-CTCATTA
65 CCATACCAATCGAGCTAAGACTCAACCAGCTTACATATATATAGTAAACATTAATATGATCATTA
8217871 TAAGTTCTCATAATATCTGCTCT
130 TAAGTTCTCATAATATCTGCTCT
*
8217894 TTGTTGATACAATATATAGAACTATCCACAGTCTCTCTCCAAATCTTAAATA
1 TTGTTGATACAATATATAGAACTATCCATAGTCTCTCTCCAAATCTTAAATA
8217946 GAAAGATAAT
Statistics
Matches: 179, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
149 71 0.40
150 7 0.04
151 4 0.02
152 97 0.54
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.34
Consensus pattern (152 bp):
TTGTTGATACAATATATAGAACTATCCATAGTCTCTCTCCAAATCTTAAATAAGAGGACAACACC
CATACCAATCGAGCTAAGACTCAACCAGCTTACATATATATAGTAAACATTAATATGATCATTAT
AAGTTCTCATAATATCTGCTCT
Found at i:8220428 original size:15 final size:15
Alignment explanation
Indices: 8220408--8220464 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
8220398 TTTTTAGTAG
8220408 TTTTAAAAAATTTTA
1 TTTTAAAAAATTTTA
*
8220423 TTTTAAAAAA-TATA
1 TTTTAAAAAATTTTA
** *
8220437 TTTTTTAAATTTTTAA
1 TTTTAAAAAATTTT-A
*
8220453 ATTTAAAAAATT
1 TTTTAAAAAATT
8220465 AATTAATTGA
Statistics
Matches: 31, Mismatches: 9, Indels: 3
0.72 0.21 0.07
Matches are distributed among these distances:
14 10 0.32
15 12 0.39
16 9 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTAAAAAATTTTA
Found at i:8223770 original size:21 final size:21
Alignment explanation
Indices: 8223746--8223786 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8223736 CACCTATAGT
8223746 GGTATCGCGATATCAACCTTA
1 GGTATCGCGATATCAACCTTA
* *
8223767 GGTATCGTGATATCCACCTT
1 GGTATCGCGATATCAACCTT
8223787 CCGAGGGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (21 bp):
GGTATCGCGATATCAACCTTA
Found at i:8227101 original size:30 final size:30
Alignment explanation
Indices: 8227067--8227126 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
8227057 TATTTTATAT
8227067 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
*
8227097 TTAATTTTGTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
8227127 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.03, G:0.15, T:0.57
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:8239225 original size:17 final size:17
Alignment explanation
Indices: 8239203--8239236 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8239193 AGAAAAAGAA
8239203 AACCACGCAAATCATAT
1 AACCACGCAAATCATAT
8239220 AACCACGCAAATCATAT
1 AACCACGCAAATCATAT
8239237 CATCTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.29, G:0.06, T:0.18
Consensus pattern (17 bp):
AACCACGCAAATCATAT
Found at i:8242106 original size:26 final size:26
Alignment explanation
Indices: 8242077--8242126 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
8242067 CGGGTCTGAC
*
8242077 GATCGGGCTGGGTTAGGGGTGTTATA
1 GATCGGGCCGGGTTAGGGGTGTTATA
8242103 GATCGGGCCGGGTTAGGGGTGTTA
1 GATCGGGCCGGGTTAGGGGTGTTA
8242127 CAATGTCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.14, C:0.10, G:0.48, T:0.28
Consensus pattern (26 bp):
GATCGGGCCGGGTTAGGGGTGTTATA
Found at i:8273217 original size:23 final size:23
Alignment explanation
Indices: 8273176--8273220 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8273166 TTTCTTACTG
*
8273176 TAGTAATTTTCAGGGTATTACAA
1 TAGTAATTTTCAGGATATTACAA
8273199 TAGTAATTTTC-GAGATATTACA
1 TAGTAATTTTCAG-GATATTACA
8273221 TTTTCTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (23 bp):
TAGTAATTTTCAGGATATTACAA
Found at i:8276148 original size:87 final size:87
Alignment explanation
Indices: 8276045--8276308 Score: 456
Period size: 87 Copynumber: 3.0 Consensus size: 87
8276035 GGCTATAGAC
8276045 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
8276110 ACTATGTTTCAATACTTGAGCA
66 ACTATGTTTCAATACTTGAGCA
* * *
8276132 TTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTCACTAAATGTTTAA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
*
8276197 ACTGTGTTTCAATACTTGAGCA
66 ACTATGTTTCAATACTTGAGCA
* * *
8276219 CTCTTACTTTCCGTCAATGTTAGGTTCTGACTTAGCTTCAAAATTTTCTTTAACTAAATGTTTGA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
*
8276284 ACTATGTTTCAATACTTGAGAA
66 ACTATGTTTCAATACTTGAGCA
8276306 CTC
1 CTC
8276309 CAAAAAGATT
Statistics
Matches: 165, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 165 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (87 bp):
CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
ACTATGTTTCAATACTTGAGCA
Found at i:8283368 original size:20 final size:20
Alignment explanation
Indices: 8283340--8283386 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
8283330 CCTTTTTCGA
*
8283340 CCAATCCATCAAATAAGATC
1 CCAACCCATCAAATAAGATC
8283360 CCAACCCATCAAATAAGATC
1 CCAACCCATCAAATAAGATC
*
8283380 CAAACCC
1 CCAACCC
8283387 TAACAGCGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.45, C:0.36, G:0.04, T:0.15
Consensus pattern (20 bp):
CCAACCCATCAAATAAGATC
Found at i:8288594 original size:43 final size:43
Alignment explanation
Indices: 8288539--8288709 Score: 288
Period size: 43 Copynumber: 4.0 Consensus size: 43
8288529 GGAATCTTGT
8288539 ATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAA
1 ATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAA
* * *
8288582 ATCGATGGCAATAGCCTAGCTATGGCCTTACACGAAATCTCAA
1 ATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAA
*
8288625 ATCGATGCCAATAGCCCAACTATGGTCTTACACGAAATCTCAA
1 ATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAA
* *
8288668 ATCGATGCCAGTAGCCCAGCTATGGTCTTACTCGAAATCTCA
1 ATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCA
8288710 CCTCGAAAGT
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 118 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
ATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAA
Found at i:8288866 original size:31 final size:30
Alignment explanation
Indices: 8288830--8288936 Score: 144
Period size: 31 Copynumber: 3.5 Consensus size: 30
8288820 TACTCAAATC
8288830 AATTCGGCAATATATATCCATAAACAATTCA
1 AATTCGGCAATATATAT-CATAAACAATTCA
*
8288861 AATTCGACAATATATATTCATAAACAATTCA
1 AATTCGGCAATATATA-TCATAAACAATTCA
* * *
8288892 AATTCGGCAATGTATAT-ATATACAAATCA
1 AATTCGGCAATATATATCATAAACAATTCA
*
8288921 AATTCGGCAATGTATA
1 AATTCGGCAATATATA
8288937 AAACATATAC
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
29 26 0.37
30 1 0.01
31 42 0.60
32 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (30 bp):
AATTCGGCAATATATATCATAAACAATTCA
Found at i:8289926 original size:11 final size:11
Alignment explanation
Indices: 8289910--8289937 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8289900 TCTAAATAGC
8289910 TCATTTATATA
1 TCATTTATATA
8289921 TCATTTATATA
1 TCATTTATATA
8289932 TCATTT
1 TCATTT
8289938 GTTCATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (11 bp):
TCATTTATATA
Found at i:8290978 original size:14 final size:14
Alignment explanation
Indices: 8290959--8290985 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8290949 CATAAAATTC
8290959 TTTTGCTTTTCCCA
1 TTTTGCTTTTCCCA
8290973 TTTTGCTTTTCCC
1 TTTTGCTTTTCCC
8290986 CTTTATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.30, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTTGCTTTTCCCA
Found at i:8296202 original size:26 final size:24
Alignment explanation
Indices: 8296156--8296228 Score: 67
Period size: 29 Copynumber: 2.8 Consensus size: 24
8296146 AGCATTATTA
*
8296156 TTTAAAAATAATATATTAATATGATTACT
1 TTTAAAAATAATA-A--AATAT-A-TAAT
8296185 TTTAAAAATAATAAAATATATAAT
1 TTTAAAAATAATAAAATATATAAT
8296209 TTTATTAAAATAA-AAAATAT
1 TTTA--AAAATAATAAAATAT
8296229 TTAAGTATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
24 7 0.17
25 8 0.20
26 12 0.29
28 1 0.02
29 13 0.32
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (24 bp):
TTTAAAAATAATAAAATATATAAT
Found at i:8296244 original size:25 final size:26
Alignment explanation
Indices: 8296189--8296243 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
8296179 ATTACTTTTA
* *
8296189 AAAATAATAAAATATATAATTTTATT
1 AAAATAATAAAATATATAAGTATATT
*
8296215 AAAATAA-AAAATATTTAAGTATATAT
1 AAAATAATAAAATATATAAGTATAT-T
8296241 AAA
1 AAA
8296244 TTAGTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAATAATAAAATATATAAGTATATT
Found at i:8296812 original size:26 final size:26
Alignment explanation
Indices: 8296762--8296814 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8296752 AATATTAAGA
*
8296762 TAAACAATATTTATCTTAATAATAAT
1 TAAACAATATTTATATTAATAATAAT
* * *
8296788 TAAATAATATTTATATTTATGATAAT
1 TAAACAATATTTATATTAATAATAAT
8296814 T
1 T
8296815 TATATATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (26 bp):
TAAACAATATTTATATTAATAATAAT
Found at i:8297478 original size:20 final size:20
Alignment explanation
Indices: 8297455--8297523 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
8297445 AAAAATAATT
*
8297455 ATAATTTAATAGAAATCGTG
1 ATAATTTAATAGAAATAGTG
* * *
8297475 ATAATTATACATTAAAAATAATT
1 ATAATT-TA-A-TAGAAATAGTG
* *
8297498 ATAGTTTAATAGAAATTGTG
1 ATAATTTAATAGAAATAGTG
8297518 ATAATT
1 ATAATT
8297524 ACACAGTTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
20 18 0.50
21 3 0.08
22 3 0.08
23 12 0.33
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.39
Consensus pattern (20 bp):
ATAATTTAATAGAAATAGTG
Found at i:8297506 original size:43 final size:44
Alignment explanation
Indices: 8297418--8297549 Score: 189
Period size: 43 Copynumber: 3.0 Consensus size: 44
8297408 ATTAAAATAA
* *
8297418 AATAGAAGTTGTGATAATTATACATTTAAAAATAATTATAATTT
1 AATAGAAATTGTGATAATTATACAGTTAAAAATAATTATAATTT
* *
8297462 AATAGAAATCGTGATAATTATACA-TTAAAAATAATTATAGTTT
1 AATAGAAATTGTGATAATTATACAGTTAAAAATAATTATAATTT
*
8297505 AATAGAAATTGTGATAATTACACAGTTAAAAA-AATTCA-AATTT
1 AATAGAAATTGTGATAATTATACAGTTAAAAATAATT-ATAATTT
8297548 AA
1 AA
8297550 ATTACAATTA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
43 50 0.62
44 30 0.38
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (44 bp):
AATAGAAATTGTGATAATTATACAGTTAAAAATAATTATAATTT
Found at i:8300559 original size:30 final size:30
Alignment explanation
Indices: 8300525--8300585 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8300515 CACAAGCTAG
8300525 TGCATTTAAATATAGCCTTTTTCGAATTAA
1 TGCATTTAAATATAGCCTTTTTCGAATTAA
*
8300555 TGCATTTAAATATAGCCTTTTTTGAATTAA
1 TGCATTTAAATATAGCCTTTTTCGAATTAA
8300585 T
1 T
8300586 CACATGATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (30 bp):
TGCATTTAAATATAGCCTTTTTCGAATTAA
Found at i:8302127 original size:25 final size:25
Alignment explanation
Indices: 8302099--8302187 Score: 99
Period size: 25 Copynumber: 3.6 Consensus size: 25
8302089 TTCCAAGCCA
*
8302099 TATAACGGGAAGCTCATGTGAGTTG
1 TATAACGGGAAGCTCATGCGAGTTG
* * *
8302124 TATAACGGGAAGCTCTTGCCAGCTG
1 TATAACGGGAAGCTCATGCGAGTTG
* *
8302149 -AGTATCGGGAAGCTCATACGAGTTG
1 TA-TAACGGGAAGCTCATGCGAGTTG
*
8302174 TATAACAGGAAGCT
1 TATAACGGGAAGCT
8302188 TAAGAGAGCC
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 1 0.02
25 49 0.96
26 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (25 bp):
TATAACGGGAAGCTCATGCGAGTTG
Found at i:8302209 original size:25 final size:25
Alignment explanation
Indices: 8302181--8302288 Score: 103
Period size: 25 Copynumber: 4.3 Consensus size: 25
8302171 TTGTATAACA
*
8302181 GGAAGCTTAAGAGAGCC-ATTAATCG
1 GGAAGCTCAAGAGAGCCAATT-ATCG
*
8302206 GGAAGCTCATGAGAGCCAATTATCG
1 GGAAGCTCAAGAGAGCCAATTATCG
* * *
8302231 GGAAGCTCATGCGAGCCAAATATCG
1 GGAAGCTCAAGAGAGCCAATTATCG
* * * *
8302256 GGATGCTCATA-AGAGCTAAATAACG
1 GGAAGCTCA-AGAGAGCCAATTATCG
8302281 GGAAGCTC
1 GGAAGCTC
8302289 GTGAGAGCTG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
25 68 0.96
26 3 0.04
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (25 bp):
GGAAGCTCAAGAGAGCCAATTATCG
Found at i:8302235 original size:50 final size:50
Alignment explanation
Indices: 8302151--8302288 Score: 125
Period size: 50 Copynumber: 2.8 Consensus size: 50
8302141 GCCAGCTGAG
* **** * * *
8302151 TATCGGGAAGCTCATACGAGTTGTATAACAGGAAGCTTAAGAGAGCC-AT
1 TATCGGGAAGCTCATAAGAGCCAAATAACGGGAAGCTCAAGAGAGCCAAA
* * * * *
8302200 TAATCGGGAAGCTCATGAGAGCCAATTATCGGGAAGCTCATGCGAGCCAAA
1 T-ATCGGGAAGCTCATAAGAGCCAAATAACGGGAAGCTCAAGAGAGCCAAA
* *
8302251 TATCGGGATGCTCATAAGAGCTAAATAACGGGAAGCTC
1 TATCGGGAAGCTCATAAGAGCCAAATAACGGGAAGCTC
8302289 GTGAGAGCTG
Statistics
Matches: 69, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
49 1 0.01
50 66 0.96
51 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (50 bp):
TATCGGGAAGCTCATAAGAGCCAAATAACGGGAAGCTCAAGAGAGCCAAA
Found at i:8302297 original size:25 final size:25
Alignment explanation
Indices: 8302202--8302296 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
8302192 AGAGCCATTA
*
8302202 ATCGGGAAGCTCATGAGAGCCAATT
1 ATCGGGAAGCTCATGAGAGCCAAAT
*
8302227 ATCGGGAAGCTCATGCGAGCCAAAT
1 ATCGGGAAGCTCATGAGAGCCAAAT
* * *
8302252 ATCGGGATGCTCATAAGAGCTAAAT
1 ATCGGGAAGCTCATGAGAGCCAAAT
* *
8302277 AACGGGAAGCTCGTGAGAGC
1 ATCGGGAAGCTCATGAGAGC
8302297 TGTGGTGTGT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (25 bp):
ATCGGGAAGCTCATGAGAGCCAAAT
Found at i:8324270 original size:4 final size:4
Alignment explanation
Indices: 8324263--8324308 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
8324253 AGATATAGAT
8324263 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
8324309 GGTCATGCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:8355372 original size:6 final size:6
Alignment explanation
Indices: 8355358--8355393 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
8355348 AGAAGAAGCA
*
8355358 TTTCGC TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC
1 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC
8355394 ATTACGATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64
Consensus pattern (6 bp):
TTTCTC
Found at i:8363538 original size:18 final size:18
Alignment explanation
Indices: 8363515--8363551 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8363505 TACACGAGTC
8363515 TAGCTATACATGCCATTA
1 TAGCTATACATGCCATTA
8363533 TAGCTATACATGCCATTA
1 TAGCTATACATGCCATTA
8363551 T
1 T
8363552 CCAACCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (18 bp):
TAGCTATACATGCCATTA
Found at i:8375129 original size:24 final size:25
Alignment explanation
Indices: 8375102--8375154 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
8375092 AGGGAGAAGC
8375102 AAAAGAT-AAAGAAAA-ATAAAGAAA
1 AAAAGATAAAAGAAAATA-AAAGAAA
* *
8375126 AAAAGTTAAAAGAACATAAAAGAAA
1 AAAAGATAAAAGAAAATAAAAGAAA
8375151 AAAA
1 AAAA
8375155 TTAAATTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 18 0.72
26 1 0.04
ACGTcount: A:0.77, C:0.02, G:0.11, T:0.09
Consensus pattern (25 bp):
AAAAGATAAAAGAAAATAAAAGAAA
Found at i:8375137 original size:25 final size:24
Alignment explanation
Indices: 8375109--8375159 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
8375099 AGCAAAAGAT
8375109 AAAGAAAA-ATAAAGAAAAAAAGTTA
1 AAAGAAAATA-AAAGAAAAAAA-TTA
*
8375134 AAAGAACATAAAAGAAAAAAATTA
1 AAAGAAAATAAAAGAAAAAAATTA
8375158 AA
1 AA
8375160 TTACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 5 0.21
25 18 0.75
26 1 0.04
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (24 bp):
AAAGAAAATAAAAGAAAAAAATTA
Found at i:8377510 original size:40 final size:41
Alignment explanation
Indices: 8377465--8377571 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 41
8377455 TGGCGCTAAC
* *
8377465 GAAAAACG-CGCAATAGGTAAATCATTAGCGGCGTTTATGA
1 GAAAAACGTCGCAAAAGGTAAAGCATTAGCGGCGTTTATGA
* * * *
8377505 GAAAAATGTCGCAAAAGGTCAAGCATTGGTGGCGTTTATGA
1 GAAAAACGTCGCAAAAGGTAAAGCATTAGCGGCGTTTATGA
* * *
8377546 GAAAAAAGGCTGCAAAAGGTCAAGCA
1 GAAAAACGTC-GCAAAAGGTAAAGCA
8377572 CTAATGACGC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 7 0.12
41 35 0.61
42 15 0.26
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (41 bp):
GAAAAACGTCGCAAAAGGTAAAGCATTAGCGGCGTTTATGA
Found at i:8381782 original size:10 final size:10
Alignment explanation
Indices: 8381769--8381800 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
8381759 ATTTTCTATT
8381769 TTCTTCTGAA
1 TTCTTCTGAA
8381779 TTCTTCTGAA
1 TTCTTCTGAA
*
8381789 TTCTTCTAAA
1 TTCTTCTGAA
8381799 TT
1 TT
8381801 TGTGTGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (10 bp):
TTCTTCTGAA
Found at i:8382226 original size:39 final size:39
Alignment explanation
Indices: 8382172--8382246 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
8382162 CCTAGAGGTA
8382172 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAAGTG
1 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAAGTG
8382211 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAA
1 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAA
8382247 CAATAGAGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.16, C:0.11, G:0.19, T:0.55
Consensus pattern (39 bp):
TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAAGTG
Found at i:8385222 original size:35 final size:35
Alignment explanation
Indices: 8385155--8385222 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 35
8385145 AATTGTGTTA
*
8385155 TTAATTTATTATTTTAAATTCTAAATTTAAATTCG
1 TTAATTTATTATTTTAAATTCTAAATTAAAATTCG
*
8385190 TTAATTT-TTATATTT-AATTTTAAAGTTAAAATT
1 TTAATTTATTAT-TTTAAATTCTAAA-TTAAAATT
8385223 TTATAGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 12 0.41
35 17 0.59
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (35 bp):
TTAATTTATTATTTTAAATTCTAAATTAAAATTCG
Found at i:8385576 original size:13 final size:14
Alignment explanation
Indices: 8385533--8385585 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
8385523 ACAAATTTAT
* *
8385533 AAATTAAAAGAGTA
1 AAATTTAAAGATTA
* *
8385547 TAATTAAAAGATTA
1 AAATTTAAAGATTA
8385561 AAATTTAAAG-TTA
1 AAATTTAAAGATTA
8385574 AAATTTAAAGAT
1 AAATTTAAAGAT
8385586 GATAATCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
13 13 0.38
14 21 0.62
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.32
Consensus pattern (14 bp):
AAATTTAAAGATTA
Found at i:8385650 original size:9 final size:9
Alignment explanation
Indices: 8385636--8385769 Score: 109
Period size: 9 Copynumber: 15.3 Consensus size: 9
8385626 AACTTTGGAT
*
8385636 CATAACGTA
1 CATAACTTA
8385645 CATAACTTA
1 CATAACTTA
8385654 CATAACTTA
1 CATAACTTA
*
8385663 CATGA--TA
1 CATAACTTA
*
8385670 CATAA-ATA
1 CATAACTTA
* * *
8385678 TATACCATA
1 CATAACTTA
8385687 TCATAACTTA
1 -CATAACTTA
*
8385697 CATCACTTA
1 CATAACTTA
8385706 CATAACTTA
1 CATAACTTA
8385715 CATAA-TT-
1 CATAACTTA
*
8385722 CATAA-ATA
1 CATAACTTA
* * *
8385730 TATATCATA
1 CATAACTTA
8385739 TCATAACTTA
1 -CATAACTTA
8385749 CATAACTTA
1 CATAACTTA
8385758 CATAACTTA
1 CATAACTTA
8385767 CAT
1 CAT
8385770 TATACATAAA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
7 12 0.12
8 10 0.10
9 69 0.67
10 12 0.12
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:8385705 original size:52 final size:52
Alignment explanation
Indices: 8385634--8385805 Score: 290
Period size: 52 Copynumber: 3.3 Consensus size: 52
8385624 AAAACTTTGG
* * *
8385634 ATCATAACGTACATAACTTACATAACTTACATGATACATAAATATATACCAT
1 ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
* *
8385686 ATCATAACTTACATCACTTACATAACTTACATAATTCATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
*
8385738 ATCATAACTTACATAACTTACATAACTTACATTATACATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
8385790 ATCATAACTTACATAA
1 ATCATAACTTACATAA
8385806 AACTTTGGAT
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 112 1.00
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (52 bp):
ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
Found at i:8385933 original size:7 final size:7
Alignment explanation
Indices: 8385921--8385945 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8385911 ACACCCATTA
8385921 GATACTT
1 GATACTT
8385928 GATACTT
1 GATACTT
8385935 GATACTT
1 GATACTT
8385942 GATA
1 GATA
8385946 TGTATTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (7 bp):
GATACTT
Found at i:8387662 original size:9 final size:9
Alignment explanation
Indices: 8387648--8387696 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
8387638 TTTGGTTAAA
8387648 AATTAACCG
1 AATTAACCG
8387657 AATTAACCG
1 AATTAACCG
*
8387666 AATTACCCG
1 AATTAACCG
*
8387675 AATTACCCG
1 AATTAACCG
* *
8387684 ATTTATCCG
1 AATTAACCG
8387693 AATT
1 AATT
8387697 GAATCACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:8387736 original size:37 final size:37
Alignment explanation
Indices: 8387695--8387769 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
8387685 TTTATCCGAA
*
8387695 TTGAATCACTACATAATTAAAAATATGACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATGACATAAGTCT
* *
8387732 TTGAATCACTACATAATTAAAAACATTACATAATTCT
1 TTGAATCACTACATAATTAAAAACATGACATAAGTCT
8387769 T
1 T
8387770 GAAATTAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATGACATAAGTCT
Found at i:8387980 original size:39 final size:39
Alignment explanation
Indices: 8387898--8388006 Score: 184
Period size: 39 Copynumber: 2.8 Consensus size: 39
8387888 ACTTAAGAGT
*
8387898 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTAGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTAGG
* *
8387936 TAGACTTTAGTTTTAGTTTTATTTGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTAGG
8387975 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGT
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGT
8388007 GGGATAATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 26 0.39
39 40 0.61
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTAGG
Found at i:8392244 original size:66 final size:65
Alignment explanation
Indices: 8392132--8392274 Score: 171
Period size: 66 Copynumber: 2.2 Consensus size: 65
8392122 GCAAATTGCT
* * * *
8392132 CAACTTAAAGCGGAGACAACATCGAGAGAAGTAGAGGCTCAAAGAAAATATGAAGAACTCCAGCT
1 CAACTTAAAACGGAGACAACAGCGAGAGAAGCAGAGGC-CAAAGAAAATATGAAGAACTCCAACT
8392197 A
65 A
* * *
8392198 CAACTTAAAACGGAGGCAACAGCGAGGGAAGCAGAGG-CAAGTAGAAAATATGACGAACTCCAAC
1 CAACTTAAAACGGAGACAACAGCGAGAGAAGCAGAGGCCAA--AGAAAATATGAAGAACTCCAAC
8392262 TA
64 TA
*
8392264 CAGCTTCAAAA
1 CAACTT-AAAA
8392275 TATGATGAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
64 3 0.05
66 59 0.89
67 4 0.06
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.13
Consensus pattern (65 bp):
CAACTTAAAACGGAGACAACAGCGAGAGAAGCAGAGGCCAAAGAAAATATGAAGAACTCCAACTA
Found at i:8392646 original size:43 final size:43
Alignment explanation
Indices: 8392580--8392801 Score: 230
Period size: 43 Copynumber: 5.2 Consensus size: 43
8392570 AAACATGACT
*
8392580 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
8392623 TTTA-CTGGCATTTGTGGGGAAAGCGTCGCTAAAGGTCATGTTC
1 TTTAGC-GGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
* ** *
8392666 TTTAGCGGTGTTTATGGGAAAATTGCCGCTAAAGGTTATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
** * *
8392709 CATAGCGGCGTTTATGGGGAAAGCGCCGCTAAGGGTCATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
** * * * ** *
8392752 TTTAGCGGTATTTTTGTGAGAAGCATCGCTAAATGTCATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
*
8392795 TATAGCG
1 TTTAGCG
8392802 AAATTTTTGT
Statistics
Matches: 144, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
42 1 0.01
43 142 0.99
44 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:8392816 original size:129 final size:129
Alignment explanation
Indices: 8392582--8392816 Score: 312
Period size: 129 Copynumber: 1.8 Consensus size: 129
8392572 ACATGACTTT
* *
8392582 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGGGAAAGC
1 TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGAGAAAGC
* * ***
8392647 GTCGCTAAAGGTCATGTTCTTTAGCGGTGTTTATGGGAAAATTGCCGCTAAAGGTTATGTTCCA
66 ATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAATTGCCGCTAAAGGTTATGTTCCA
* * * *
8392711 TAGCGGCGTTTATGGGGAAAGCGCCGCTAAGGGTCATGTTCTTTAGC-GGTATTTTTGTGAG-AA
1 TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTA-CTGGCATTTGTG-GAGAAA
* * *
8392774 GCATCGCTAAATGTCATGTTCTATAGCGAAATTTTTGTGAAAA
64 GCATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAA
8392817 ACGTTGCTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
129 87 0.97
130 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (129 bp):
TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGAGAAAGC
ATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAATTGCCGCTAAAGGTTATGTTCCA
Found at i:8392826 original size:129 final size:129
Alignment explanation
Indices: 8392582--8392850 Score: 308
Period size: 129 Copynumber: 2.1 Consensus size: 129
8392572 ACATGACTTT
* *
8392582 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGGGAAAGC
1 TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGAGAAAGC
* * *** ** *
8392647 GTCGCTAAAGGTCATGTTCTTTAGCGGTGTTTATGGGAAAATTGCCGCTAAAGGTTATGTTCCA
66 ATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAAACGCCGCTAAAGGTCATGTTCCA
* * * *
8392711 TAGCGGCGTTTATGGGGAAAGCGCCGCTAAGGGTCATGTTCTTTAGC-GGTATTTTTGTGAG-AA
1 TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTA-CTGGCATTTGTG-GAGAAA
* * * ** * *
8392774 GCATCGCTAAATGTCATGTTCTATAGCGAAATTTTTGTGAAAAACGTTGCTAAATGTCATGTTCT
64 GCATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAAACGCCGCTAAAGGTCATGTTCC
8392839 A
129 A
*
8392840 TAGCGACGTTT
1 TAGCGGCGTTT
8392851 TTCCACATAA
Statistics
Matches: 116, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
129 113 0.97
130 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (129 bp):
TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGAGAAAGC
ATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAAACGCCGCTAAAGGTCATGTTCCA
Found at i:8392852 original size:43 final size:43
Alignment explanation
Indices: 8392743--8392845 Score: 143
Period size: 43 Copynumber: 2.4 Consensus size: 43
8392733 GCCGCTAAGG
* ** * *
8392743 GTCATGTTCTTTAGCGGTATTTTTGTGAGAAGCATCGCTAAAT
1 GTCATGTTCTATAGCGAAATTTTTGTGAAAAACATCGCTAAAT
* *
8392786 GTCATGTTCTATAGCGAAATTTTTGTGAAAAACGTTGCTAAAT
1 GTCATGTTCTATAGCGAAATTTTTGTGAAAAACATCGCTAAAT
8392829 GTCATGTTCTATAGCGA
1 GTCATGTTCTATAGCGA
8392846 CGTTTTTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (43 bp):
GTCATGTTCTATAGCGAAATTTTTGTGAAAAACATCGCTAAAT
Found at i:8394985 original size:29 final size:31
Alignment explanation
Indices: 8394947--8395004 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
8394937 TCCGAGCCTT
*
8394947 GGGGCAAAAA-TGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATTGTAATTATGAAAAAGTTTA
*
8394977 GGGG-AAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATTGTAATTATGAAAAAGTT
8395005 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (31 bp):
GGGGCAAAAATTGTAATTATGAAAAAGTTTA
Found at i:8395234 original size:13 final size:13
Alignment explanation
Indices: 8395216--8395247 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8395206 TTTCCAGCAA
8395216 TTATGAATTTATT
1 TTATGAATTTATT
8395229 TTATGAATTTATT
1 TTATGAATTTATT
*
8395242 TGATGA
1 TTATGA
8395248 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8395455 original size:50 final size:50
Alignment explanation
Indices: 8395342--8395582 Score: 268
Period size: 50 Copynumber: 4.7 Consensus size: 50
8395332 ATTTGGGTAA
* * *
8395342 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
8395398 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
8395448 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
8395498 AGAAGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
** *
8395548 AGAACATCCCATGTAAGACCATGTCTGGGATATGG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGG
8395583 ATTTGGCATG
Statistics
Matches: 161, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 88 0.55
51 27 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.24
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:8395530 original size:100 final size:103
Alignment explanation
Indices: 8395342--8395591 Score: 330
Period size: 100 Copynumber: 2.4 Consensus size: 103
8395332 ATTTGGGTAA
*
8395342 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAAGTCCC
* *
8395407 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * * *
8395448 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAAGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
8395510 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
8395548 AGAACATCCCATGTAAGACCATGTCTGGGATATGG-ATTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCAT
8395592 GTTATTATCA
Statistics
Matches: 128, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
99 1 0.01
100 50 0.39
101 36 0.28
105 2 0.02
106 39 0.30
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:8399123 original size:25 final size:25
Alignment explanation
Indices: 8399086--8399171 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 25
8399076 AAAGAAAATA
** * *
8399086 TTTTAATTTTATATTATCATTCATG
1 TTTTAATGATATATTATCATACAAG
8399111 TTTTAATGATATA--ATCATACAAG
1 TTTTAATGATATATTATCATACAAG
** *
8399134 TTTTAATTTTATATTATCATGCAAG
1 TTTTAATGATATATTATCATACAAG
8399159 TTTTAATGATATA
1 TTTTAATGATATA
8399172 ATCATATCAA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
23 19 0.38
25 31 0.62
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (25 bp):
TTTTAATGATATATTATCATACAAG
Found at i:8399127 original size:23 final size:23
Alignment explanation
Indices: 8399096--8399177 Score: 92
Period size: 23 Copynumber: 3.5 Consensus size: 23
8399086 TTTTAATTTT
* * *
8399096 ATATTATCATTCATGTTTTAATG
1 ATATAATCATACAAGTTTTAATG
*
8399119 ATATAATCATACAAGTTTTAATTTT
1 ATATAATCATACAAGTTTTAA--TG
* *
8399144 ATATTATCATGCAAGTTTTAATG
1 ATATAATCATACAAGTTTTAATG
8399167 ATATAATCATA
1 ATATAATCATA
8399178 TCAATTAGTT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
23 28 0.58
25 20 0.42
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (23 bp):
ATATAATCATACAAGTTTTAATG
Found at i:8399142 original size:48 final size:48
Alignment explanation
Indices: 8399086--8399177 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
8399076 AAAGAAAATA
* *
8399086 TTTTAATTTTATATTATCATTCATGTTTTAATGATATAATCATACAAG
1 TTTTAATTTTATATTATCATGCAAGTTTTAATGATATAATCATACAAG
8399134 TTTTAATTTTATATTATCATGCAAGTTTTAATGATATAATCATA
1 TTTTAATTTTATATTATCATGCAAGTTTTAATGATATAATCATA
8399178 TCAATTAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.36, C:0.08, G:0.07, T:0.50
Consensus pattern (48 bp):
TTTTAATTTTATATTATCATGCAAGTTTTAATGATATAATCATACAAG
Found at i:8399672 original size:19 final size:19
Alignment explanation
Indices: 8399648--8399684 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8399638 TCCAGTTCTT
8399648 ATATTTTTAATTTCAAATA
1 ATATTTTTAATTTCAAATA
8399667 ATATTTTTAATTTCAAAT
1 ATATTTTTAATTTCAAAT
8399685 TATCTCACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (19 bp):
ATATTTTTAATTTCAAATA
Found at i:8410174 original size:15 final size:16
Alignment explanation
Indices: 8410138--8410173 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8410128 CAAAAGGTAT
8410138 AAAAATTCTTAGCAAA
1 AAAAATTCTTAGCAAA
*
8410154 AAAAATTCTTAGTAAA
1 AAAAATTCTTAGCAAA
8410170 AAAA
1 AAAA
8410174 TGGAAAAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.61, C:0.08, G:0.06, T:0.25
Consensus pattern (16 bp):
AAAAATTCTTAGCAAA
Found at i:8412760 original size:39 final size:38
Alignment explanation
Indices: 8412679--8412759 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
8412669 TTTAATTAAG
* * *
8412679 TTTTTAAAATTTAAAAATTTTAAAAAGTTATAAAACTA
1 TTTTTAAAAATTAAAAATATTAAAAAGTTATAAAAATA
*
8412717 TTTTTAAAAATTAAACATCATTAAAAA-TTATAAAAATA
1 TTTTTAAAAATTAAAAAT-ATTAAAAAGTTATAAAAATA
8412755 TTTTT
1 TTTTT
8412760 TTAATTTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 31 0.82
39 7 0.18
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (38 bp):
TTTTTAAAAATTAAAAATATTAAAAAGTTATAAAAATA
Found at i:8423526 original size:16 final size:16
Alignment explanation
Indices: 8423501--8423535 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8423491 TTGTGTTTTG
*
8423501 TTTTGGCTGCATGACA
1 TTTTGACTGCATGACA
*
8423517 TTTTGACTGCATGGCA
1 TTTTGACTGCATGACA
8423533 TTT
1 TTT
8423536 CATCATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:8426094 original size:6 final size:6
Alignment explanation
Indices: 8426083--8426115 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8426073 AAAAATAAAA
*
8426083 AAAATT ACAATT AAAATT AAAATT AAAA-T AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAA
8426116 AAATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (6 bp):
AAAATT
Found at i:8426149 original size:26 final size:27
Alignment explanation
Indices: 8426107--8426158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
8426097 AATTAAAATT
8426107 AAAATAAAAAAATAAAATAATCAAAAC
1 AAAATAAAAAAATAAAATAATCAAAAC
*
8426134 AAAATAAAAATA-AAAATAATCAAAA
1 AAAATAAAAAAATAAAATAATCAAAA
8426159 TCGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (27 bp):
AAAATAAAAAAATAAAATAATCAAAAC
Found at i:8428533 original size:46 final size:46
Alignment explanation
Indices: 8428466--8428557 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
8428456 GCAGTGGAGC
8428466 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGT
* *
8428512 AGATTAAAGTTGAAGGCAGCGAATCTTATTTCTCTGGCGTTGCAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGT
8428558 GGAACAGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (46 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGT
Found at i:8428590 original size:51 final size:51
Alignment explanation
Indices: 8428448--8428628 Score: 203
Period size: 51 Copynumber: 3.6 Consensus size: 51
8428438 CCTTATACCC
* *
8428448 CTGGCGTGGCAGTGGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATTTCT
1 CTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCT
* *
8428499 CTGGCGTCGCAGT-----AGATTAAAGTTGAAGGCAGCGAATCTTATTTCT
1 CTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCT
* * *
8428545 CTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGACTCTTA-TTCTT
1 CTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC-T
* * * * *
8428596 TTGGCGTTGCAATTGAATATATTAAAGCTGAAG
1 CTGGCGTTGCAGTGGAACAGATTAAAGCTGAAG
8428629 TAGAGCGGAT
Statistics
Matches: 111, Mismatches: 13, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
46 44 0.40
50 3 0.03
51 64 0.58
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (51 bp):
CTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCT
Done.