Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 3 of 216
Found at i:912860 original size:16 final size:16
Alignment explanation
Indices: 912841--912876 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
912831 ATTTTTTAAT
912841 TTTTAATTTTAAAATA
1 TTTTAATTTTAAAATA
*
912857 TTTTATTTTTAAAATA
1 TTTTAATTTTAAAATA
912873 TTTT
1 TTTT
912877 TTTAATGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTAATTTTAAAATA
Found at i:928297 original size:17 final size:17
Alignment explanation
Indices: 928270--928307 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
928260 GAATTAAACA
928270 TTTAAAAAATAT-ATTT
1 TTTAAAAAATATAATTT
928286 TTTAATAAAATATAATTT
1 TTTAA-AAAATATAATTT
928304 TTTA
1 TTTA
928308 TCTAAGACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.25
17 7 0.35
18 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTAAAAAATATAATTT
Found at i:928949 original size:23 final size:24
Alignment explanation
Indices: 928913--928978 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 24
928903 TTTTAAATTA
*
928913 AATTAAAT-TATAAATTTTTAC-T
1 AATTATATATATAAATTTTTACTT
* * *
928935 ATTTATATATATAAATATAT-CTT
1 AATTATATATATAAATTTTTACTT
*
928958 AATTATATATATAATTTTTTA
1 AATTATATATATAAATTTTTA
928979 TCTAACTATA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
22 7 0.21
23 26 0.79
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTATATATATAAATTTTTACTT
Found at i:933778 original size:16 final size:15
Alignment explanation
Indices: 933757--933786 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
933747 ACGACTGGGC
933757 TATTATTTGTATTATA
1 TATTATTTG-ATTATA
933773 TATTATTTGATTAT
1 TATTATTTGATTAT
933787 GTGCATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (15 bp):
TATTATTTGATTATA
Found at i:935063 original size:28 final size:29
Alignment explanation
Indices: 935032--935086 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
935022 AAAGAATTGA
* *
935032 ATTATAGAATAAATTGT-AAAATTTGAGT
1 ATTAGAGAATAAATTGTGAAAAATTGAGT
*
935060 ATTAGAGACTAAATTGTGAAAAATTGA
1 ATTAGAGAATAAATTGTGAAAAATTGA
935087 AATTTAGGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.35
Consensus pattern (29 bp):
ATTAGAGAATAAATTGTGAAAAATTGAGT
Found at i:937037 original size:20 final size:20
Alignment explanation
Indices: 936999--937037 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
936989 CTATTATGTA
* *
936999 TAATTGAATAATAATTTATT
1 TAATTAAATAATAAGTTATT
*
937019 TAATTAAATAATGAGTTAT
1 TAATTAAATAATAAGTTAT
937038 ATATATAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (20 bp):
TAATTAAATAATAAGTTATT
Found at i:937692 original size:131 final size:131
Alignment explanation
Indices: 937456--937720 Score: 332
Period size: 131 Copynumber: 2.0 Consensus size: 131
937446 TATATAACAT
* * * * * *
937456 ATTGAATGACGTGACCTATTGGGTTTATACATGTCACACATGCTATATTATCAAATGATGTATAT
1 ATTGAATGACGTGACCTATTAGGTTTAAACATGTCACACATACTACATCATCAAATGATATATAT
* * * * * *
937521 GCCACATGTAATAACATATTTGGTCCATATCATTCAATTTTAGTAAAATTATAAAAATAAACTAA
66 ACAACATGTAACAACATATTTAGTCCACATCATCCAATTTTAGTAAAATTATAAAAATAAACTAA
937586 A
131 A
**
937587 ATTGAATGACGTGACCTATTAGGTTTAAACATGTGGCACATACTACATCATCAAATGATATATAT
1 ATTGAATGACGTGACCTATTAGGTTTAAACATGTCACACATACTACATCATCAAATGATATATAT
* ** * * ** *
937652 ATAATGTGTAACAACATATTTAGTCCACATTATCCGATTTTAGTGGAATTATAAAAATAAATTAA
66 ACAACATGTAACAACATATTTAGTCCACATCATCCAATTTTAGTAAAATTATAAAAATAAACTAA
937717 A
131 A
937718 ATT
1 ATT
937721 TATAATTAAA
Statistics
Matches: 112, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
131 112 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (131 bp):
ATTGAATGACGTGACCTATTAGGTTTAAACATGTCACACATACTACATCATCAAATGATATATAT
ACAACATGTAACAACATATTTAGTCCACATCATCCAATTTTAGTAAAATTATAAAAATAAACTAA
A
Found at i:951071 original size:96 final size:96
Alignment explanation
Indices: 950961--951150 Score: 380
Period size: 96 Copynumber: 2.0 Consensus size: 96
950951 TCTGTGTCTC
950961 TCAGTTAAAAAATTCATTTCCTGTGATGCTTTGGCCTATTCTTTTTGTTGGTTTTATGTTTGTTT
1 TCAGTTAAAAAATTCATTTCCTGTGATGCTTTGGCCTATTCTTTTTGTTGGTTTTATGTTTGTTT
951026 CATTTGATTGAATTCAGTCAATTTTGTCTAT
66 CATTTGATTGAATTCAGTCAATTTTGTCTAT
951057 TCAGTTAAAAAATTCATTTCCTGTGATGCTTTGGCCTATTCTTTTTGTTGGTTTTATGTTTGTTT
1 TCAGTTAAAAAATTCATTTCCTGTGATGCTTTGGCCTATTCTTTTTGTTGGTTTTATGTTTGTTT
951122 CATTTGATTGAATTCAGTCAATTTTGTCT
66 CATTTGATTGAATTCAGTCAATTTTGTCT
951151 CTTCTTGTAG
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.19, C:0.13, G:0.16, T:0.52
Consensus pattern (96 bp):
TCAGTTAAAAAATTCATTTCCTGTGATGCTTTGGCCTATTCTTTTTGTTGGTTTTATGTTTGTTT
CATTTGATTGAATTCAGTCAATTTTGTCTAT
Found at i:958528 original size:21 final size:21
Alignment explanation
Indices: 958499--958538 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
958489 AATGGGATTG
*
958499 TTTACTGTTTAAAAAAATGAT
1 TTTACTGTTGAAAAAAATGAT
* *
958520 TTTAGTGTTGAATAAAATG
1 TTTACTGTTGAAAAAAATG
958539 TAAATAGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (21 bp):
TTTACTGTTGAAAAAAATGAT
Found at i:966556 original size:24 final size:25
Alignment explanation
Indices: 966518--966566 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
966508 ATCTGTGCCT
*
966518 TAATTTTTCTCTCTTTGAAGATTAA
1 TAATTTATCTCTCTTTGAAGATTAA
*
966543 TAATTTAT-TCTCTTTGATGATTAA
1 TAATTTATCTCTCTTTGAAGATTAA
966567 GAATGAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.53
Consensus pattern (25 bp):
TAATTTATCTCTCTTTGAAGATTAA
Found at i:967394 original size:3 final size:3
Alignment explanation
Indices: 967386--967440 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
967376 TCATTTACAC
967386 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
967434 AT- ATA AT
1 ATA ATA AT
967441 CCGTGTTGGG
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:972772 original size:22 final size:23
Alignment explanation
Indices: 972724--972779 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
972714 TTTTAAGAAC
*
972724 TTATAATTTTTGTATGTATTTAA
1 TTATATTTTTTGTATGTATTTAA
972747 -TATATTTTTTGTAT-T-TTTATA
1 TTATATTTTTTGTATGTATTTA-A
972768 TTATATATTTTT
1 TTATAT-TTTTT
972780 AAATTTAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 4 0.14
21 2 0.07
22 18 0.62
23 5 0.17
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (23 bp):
TTATATTTTTTGTATGTATTTAA
Found at i:983876 original size:29 final size:30
Alignment explanation
Indices: 983835--983910 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 30
983825 TTTATTTTTT
983835 ATTT-TTTAATAATATAA-AGATTAAATTA
1 ATTTATTTAATAATATAAGAGATTAAATTA
*
983863 ATTTATTTAATAATA-AAGAGATTAATTTA
1 ATTTATTTAATAATATAAGAGATTAAATTA
*
983892 ATTTAGTATTTATAATATA
1 ATTTA-T-TTAATAATATA
983911 TATAATTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
28 6 0.15
29 25 0.61
30 1 0.02
31 8 0.20
32 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (30 bp):
ATTTATTTAATAATATAAGAGATTAAATTA
Found at i:985389 original size:31 final size:29
Alignment explanation
Indices: 985327--985389 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
985317 GGTCGGACTA
*
985327 TAATTTTTAAATTGAAAAAGTATATGAAC
1 TAATTTTTAAATTGAAAAAGTATAGGAAC
* * *
985356 TAATTTTTGAATTTTAAATAAGTATAGGGAC
1 TAATTTTT-AAATTGAAA-AAGTATAGGAAC
985387 TAA
1 TAA
985390 CAACATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 8 0.29
30 7 0.25
31 13 0.46
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.40
Consensus pattern (29 bp):
TAATTTTTAAATTGAAAAAGTATAGGAAC
Found at i:993301 original size:31 final size:32
Alignment explanation
Indices: 993260--993320 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
993250 CATCCACTAA
*
993260 TTATATTATATTTA-ATTATTTT-ATATAATAT
1 TTATACTATATTTATA-TATTTTGATATAATAT
*
993291 TTATACTATATTTTTATATTTTGATATAAT
1 TTATACTATATTTATATATTTTGATATAAT
993321 GTTATTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (32 bp):
TTATACTATATTTATATATTTTGATATAATAT
Found at i:995172 original size:236 final size:230
Alignment explanation
Indices: 994713--995178 Score: 718
Period size: 230 Copynumber: 2.0 Consensus size: 230
994703 TGGTGACTAA
* * *
994713 TTAAAATACTACACATCAAGTTTATGTTTTATGTATATTTCAAGTTCGAGTAGAACTTGGTCCGG
1 TTAAAATACTACACATCAACTTTATGTTTTATGTATATTTCAAGTTCAAGTAGAACTCGGTCCGG
*
994778 AGCCATTAGTTGAAACGGAAGTAACTAATGAGTACGAGTGGACTCAAAGTGAACAAACTAATGAA
66 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGAGTGGACTCAAAGTGAACAAACTAATGAA
*
994843 TTTATAACACCCTATCCAGTTTTCAGCAACTTTATTGATGACGGGAATGAAGTGATCTCCTATCA
131 TTCATAACACCCTATCCAGTTTTCAGCAACTTTATTGATGACGGGAATGAAGTGATCTCCTATCA
994908 CCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
196 CCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
* * * *
994943 TTAAAATACTAGACATCGACTTTATGTTTTATGTATATTTCAGGTTCAAGTAGAACTCGGTTCGG
1 TTAAAATACTACACATCAACTTTATGTTTTATGTATATTTCAAGTTCAAGTAGAACTCGGTCCGG
* * *
995008 AGTCATTAGTTGAAACCGAAGTAACTAATGAGTATGGGTGGACTCAAAGTGAACAAACTAATGAA
66 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGAGTGGACTCAAAGTGAACAAACTAATGAA
* * *
995073 TTCATAACTCCCTGTCCGGTTTTAAACAGCGAAAACTTTATTGATGACGGGAATGAAGTGATCT-
131 TTCATAACACCCTATCCAGTTTT---CAGC---AACTTTATTGATGACGGGAATGAAGTGATCTC
*
995137 CTAATCACCAGTCACAAGTAAGAACGCTTTTCTCGGAAATTT
190 CT-ATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
995179 CGAAGTTTAG
Statistics
Matches: 213, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
230 138 0.65
233 4 0.02
235 2 0.01
236 69 0.32
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (230 bp):
TTAAAATACTACACATCAACTTTATGTTTTATGTATATTTCAAGTTCAAGTAGAACTCGGTCCGG
AGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGAGTGGACTCAAAGTGAACAAACTAATGAA
TTCATAACACCCTATCCAGTTTTCAGCAACTTTATTGATGACGGGAATGAAGTGATCTCCTATCA
CCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
Found at i:997972 original size:18 final size:18
Alignment explanation
Indices: 997949--997984 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
997939 TAATCATATT
997949 ATATTTA-ATTATTTTATA
1 ATATTTATATT-TTTTATA
997967 ATATTTATATTTTTTATA
1 ATATTTATATTTTTTATA
997985 TAAGACAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATATTTATATTTTTTATA
Found at i:998162 original size:22 final size:22
Alignment explanation
Indices: 998114--998155 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
998104 TGTTGAGTTC
998114 TTATAATATTTATATTATATTA
1 TTATAATATTTATATTATATTA
*
998136 TTATAATATTT-TTTTATATT
1 TTATAATATTTATATTATATT
998156 TTTTATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATAATATTTATATTATATTA
Found at i:1000438 original size:236 final size:236
Alignment explanation
Indices: 1000017--1000713 Score: 1028
Period size: 236 Copynumber: 3.0 Consensus size: 236
1000007 TGGTGACTAA
* * * *
1000017 TTAAAATACTACACATCGAGTTTACGTTTAATGTATATTTCAGGTTCGAGCAGAACTTGG-TCTG
1 TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCGAGTAGAACTTGGTTC-A
*
1000081 GAGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGAGTGGACTCAAAGTGAACAAACTAATGA
65 GAGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGGGTGGACTCAAAGTGAACAAACTAATGA
* * * * * *
1000146 ATTTATAACACCCTATCCAGTTTTTGACAATGAGAACTTTATTGCTG-TCGGGAATGAAGCGATC
130 ATTTATAACTCCCTGTCCGGTTTTCGACAATGAGAACTTTATTGATGAT-GGGAATGAAGAGATC
*
1000210 TCCCATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAAATT
194 TCCAATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAAATT
* * *
1000253 TTAAAATACTACACATCAAATTTATGTTTTATGTATATTTCAGGTTCGAGTAGAACTCGGTTCAG
1 TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCGAGTAGAACTTGGTTCAG
* *
1000318 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTATGGGTGGACTCAAAGTGAACATACTAATGAA
66 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGGGTGGACTCAAAGTGAACAAACTAATGAA
* *
1000383 TATATAACTCCCTGTCCGGTTTTCGACAATGAGAACTTTATTGATGATTGGAATGAAGAGATCTC
131 TTTATAACTCCCTGTCCGGTTTTCGACAATGAGAACTTTATTGATGATGGGAATGAAGAGATCTC
*
1000448 CAATCACCAGGCACAAGTAAGAACACTTTTCTCGGAAAATT
196 CAATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAAATT
* * *
1000489 TTAAAATACTACACATTGAGTTTATGTTTTATGTATATTGCAGGTTCAAGTAGAACTTGGTTCAG
1 TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCGAGTAGAACTTGGTTCAG
** *
1000554 AGCCATTAGTTGAAATGGAAGTAACTAATGAGTACGGATGGACTCAAAGTGAACAAACTAATGAA
66 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGGGTGGACTCAAAGTGAACAAACTAATGAA
*
1000619 TTTATAACTCCCTGTCCGGTTTTCGAC-------A--TTA---ATGATGGGAATGAAGTGATCTC
131 TTTATAACTCCCTGTCCGGTTTTCGACAATGAGAACTTTATTGATGATGGGAATGAAGAGATCTC
1000672 CAATCACCAGTCACAAGTAAGAACACTTTTCTCGG-AAATT
196 CAATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAAATT
1000712 TT
1 TT
1000714 GAAGTTTAGT
Statistics
Matches: 424, Mismatches: 35, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
223 7 0.02
224 54 0.13
227 3 0.01
229 1 0.00
236 356 0.84
237 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (236 bp):
TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCGAGTAGAACTTGGTTCAG
AGCCATTAGTTGAAACCGAAGTAACTAATGAGTACGGGTGGACTCAAAGTGAACAAACTAATGAA
TTTATAACTCCCTGTCCGGTTTTCGACAATGAGAACTTTATTGATGATGGGAATGAAGAGATCTC
CAATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAAATT
Found at i:1005142 original size:18 final size:20
Alignment explanation
Indices: 1005105--1005143 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
1005095 AAAAAAAAAT
*
1005105 TATTATTTAAATTATTTAAA
1 TATTATTTAAAATATTTAAA
1005125 TATT-TTTAAAAT-TTTAAA
1 TATTATTTAAAATATTTAAA
1005143 T
1 T
1005144 TAATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTATTTAAAATATTTAAA
Found at i:1005176 original size:35 final size:35
Alignment explanation
Indices: 1005136--1005203 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
1005126 ATTTTTAAAA
*
1005136 TTTTAA-ATTAATATATATAAAATTTTATCTTTTTC
1 TTTTAATATT-ATATATATAAAATTTAATCTTTTTC
**
1005171 TTTTAATATTATATATATTTAATTTAATCTTTT
1 TTTTAATATTATATATATAAAATTTAATCTTTT
1005204 AAAAATTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 26 0.90
36 3 0.10
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (35 bp):
TTTTAATATTATATATATAAAATTTAATCTTTTTC
Found at i:1007219 original size:66 final size:66
Alignment explanation
Indices: 1007138--1007276 Score: 199
Period size: 66 Copynumber: 2.1 Consensus size: 66
1007128 TGTGGTAATA
* * ** * *
1007138 TGTGAAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCACAATTGTGGTACTATGTGAAGGGCGCT
1 TGTGAAGGCCACTTTGTAAAGAAAGATAACTTTGGTCACAAGTGCAGTACTATGTGAAGGCCACT
1007203 T
66 T
*
1007204 TGTGAAGGCTC-CTTTGTGAAGAAAGATAACTTTGGTCACAAGTGCAGTACTATGTGAAGGCCAC
1 TGTGAAGGC-CACTTTGTAAAGAAAGATAACTTTGGTCACAAGTGCAGTACTATGTGAAGGCCAC
1007268 TT
65 TT
1007270 TGTGAAG
1 TGTGAAG
1007277 AAGGTAGCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
66 64 0.98
67 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (66 bp):
TGTGAAGGCCACTTTGTAAAGAAAGATAACTTTGGTCACAAGTGCAGTACTATGTGAAGGCCACT
T
Found at i:1007309 original size:51 final size:52
Alignment explanation
Indices: 1007204--1007317 Score: 135
Period size: 51 Copynumber: 2.2 Consensus size: 52
1007194 AAGGGCGCTT
*
1007204 TGTGAAGGCTC-CTTTGTGAAGAAAGATAACTTTGGTCACAAGTGCAGTACTA
1 TGTGAAGGC-CACTTTGTGAAGAAAGATAACTTTGGTCACAAGGGCAGTACTA
* * **
1007256 TGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGG-CTACAAGGGTGGTACTA
1 TGTGAAGGCCACTTTGTGAAGAAAGATAACTTTGGTC-ACAAGGGCAGTACTA
*
1007307 TGTGCAGGCCA
1 TGTGAAGGCCA
1007318 TCGAGTATTC
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
50 1 0.02
51 34 0.63
52 19 0.35
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (52 bp):
TGTGAAGGCCACTTTGTGAAGAAAGATAACTTTGGTCACAAGGGCAGTACTA
Found at i:1008869 original size:17 final size:17
Alignment explanation
Indices: 1008847--1008890 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
1008837 ATTATTATAA
* *
1008847 TATATTTTTATATTTTT
1 TATATTTTTATATTATG
*
1008864 TATATTTTGATATTATG
1 TATATTTTTATATTATG
1008881 T-TATTTTTAT
1 TATATTTTTAT
1008891 GTATATCGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (17 bp):
TATATTTTTATATTATG
Found at i:1013430 original size:18 final size:18
Alignment explanation
Indices: 1013407--1013442 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
1013397 TAATTATATT
1013407 ATATTTA-ATTATTTTATA
1 ATATTTATATT-TTTTATA
1013425 ATATTTATATTTTTTATA
1 ATATTTATATTTTTTATA
1013443 TAAGACAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATATTTATATTTTTTATA
Found at i:1015421 original size:236 final size:233
Alignment explanation
Indices: 1015000--1015696 Score: 1052
Period size: 236 Copynumber: 3.0 Consensus size: 233
1014990 TGGTGACTAA
* * ** * *
1015000 TTAAAATACTACACATCGAGTTTACGTTTAATGTATATTTCAGGTTCAAGTAGAACTTGGTCCGG
1 TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCAAGTAGAACTCAGTTCAG
* * *
1015065 AGCCATTAGTTGAAACGGAAGTAACTAATGAGTACGAGTGGACTCAAAGTGAACAAACTAATGAA
66 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTATGGGTGGACTCAAAGTGAACAAACTAATGAA
* * *
1015130 TTTATAACACCCTATCCAGTTTTCAACAATGAGAACTTTATTGATGACGGGAATGAAGTGATCTC
131 TTTATAACTCCCTGTCCAGTTTTC-ACAA-GA-AACTTTATTGATGATGGGAATGAAGTGATCTC
*
1015195 CCATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
193 CAATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
1015236 TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCAAGTAGAACTCAGTTCAG
1 TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCAAGTAGAACTCAGTTCAG
* *
1015301 AGTCATTAGTTGAAACCGAAGTAACTAATGAGTATGGGTTGACTCAAAGTGAACAAACTAATGAA
66 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTATGGGTGGACTCAAAGTGAACAAACTAATGAA
* *
1015366 TTTATAACTCCCTGTCCGGTTTTCGACAACGAAAACTTTATTGATGATTGGAATGAAGTGATCTC
131 TTTATAACTCCCTGTCCAGTTTTC-ACAA-G-AAACTTTATTGATGATGGGAATGAAGTGATCTC
*
1015431 CAATCACCAGTCACAAGTAAGAACACTTTTCTCGAAAATTT
193 CAATCACCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
*
1015472 TTAAAATACTACACATTGAGTTTATGTTTTATGTATATTTCAGGTTCAAGTAGAACTCAGTTCAG
1 TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCAAGTAGAACTCAGTTCAG
* *
1015537 AGCCATTAGTTGAAATCGAAGTAACTAATGAGTATAGGTGGACTCAAAGTGAACAAACTAATGAA
66 AGCCATTAGTTGAAACCGAAGTAACTAATGAGTATGGGTGGACTCAAAGTGAACAAACTAATGAA
*
1015602 TTTATAACTCCCTGTCCAGTTTT----AG--AC---ATAGATGATGGGAATGAAGTGATCTCCAA
131 TTTATAACTCCCTGTCCAGTTTTCACAAGAAACTTTATTGATGATGGGAATGAAGTGATCTCCAA
* * *
1015658 TAACCAGTCACAAGTAAGATCACTTTTCTCAGAAATTT
196 TCACCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
1015696 T
1 T
1015697 GAAGTTTAGT
Statistics
Matches: 428, Mismatches: 32, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
224 62 0.14
227 2 0.00
230 1 0.00
231 1 0.00
236 361 0.84
237 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (233 bp):
TTAAAATACTACACATCGAGTTTATGTTTTATGTATATTTCAGGTTCAAGTAGAACTCAGTTCAG
AGCCATTAGTTGAAACCGAAGTAACTAATGAGTATGGGTGGACTCAAAGTGAACAAACTAATGAA
TTTATAACTCCCTGTCCAGTTTTCACAAGAAACTTTATTGATGATGGGAATGAAGTGATCTCCAA
TCACCAGTCACAAGTAAGAACACTTTTCTCGGAAATTT
Found at i:1018132 original size:51 final size:51
Alignment explanation
Indices: 1018077--1018180 Score: 174
Period size: 51 Copynumber: 2.0 Consensus size: 51
1018067 TCAATAACGG
* *
1018077 AACAGTAACAGTATTCGACACACAAAGTGCTGAATCGGTAAC-GATAACAGT
1 AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACAG-TAACAGT
1018128 AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACAGTAACAGT
1 AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACAGTAACAGT
1018179 AA
1 AA
1018181 TCAGCACATA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
51 49 0.98
52 1 0.02
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.18
Consensus pattern (51 bp):
AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACAGTAACAGT
Found at i:1019586 original size:9 final size:9
Alignment explanation
Indices: 1019572--1019621 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
1019562 CATTTGAATA
1019572 AATAATTAT
1 AATAATTAT
1019581 AATAATTAT
1 AATAATTAT
*
1019590 AATATTTAT
1 AATAATTAT
1019599 -ATACA-TAT
1 AATA-ATTAT
*
1019607 AATATTTAT
1 AATAATTAT
1019616 ATATAA
1 A-ATAA
1019622 CTTAAACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
8 6 0.18
9 24 0.73
10 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (9 bp):
AATAATTAT
Found at i:1023694 original size:10 final size:10
Alignment explanation
Indices: 1023679--1023708 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1023669 CGCACGCACG
1023679 CACGCACACA
1 CACGCACACA
1023689 CACGCACACA
1 CACGCACACA
*
1023699 CACACACACA
1 CACGCACACA
1023709 AAATTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.43, C:0.50, G:0.07, T:0.00
Consensus pattern (10 bp):
CACGCACACA
Found at i:1023694 original size:14 final size:14
Alignment explanation
Indices: 1023675--1023705 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1023665 AACACGCACG
*
1023675 CACGCACGCACACA
1 CACGCACACACACA
1023689 CACGCACACACACA
1 CACGCACACACACA
1023703 CAC
1 CAC
1023706 ACAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.52, G:0.10, T:0.00
Consensus pattern (14 bp):
CACGCACACACACA
Found at i:1023706 original size:18 final size:18
Alignment explanation
Indices: 1023666--1023708 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
1023656 CAATATGAAA
* * *
1023666 ACACGCACGCACGCACGC
1 ACACACACGCACACACAC
1023684 ACACACACGCACACACAC
1 ACACACACGCACACACAC
1023702 ACACACA
1 ACACACA
1023709 AAATTTTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.49, G:0.12, T:0.00
Consensus pattern (18 bp):
ACACACACGCACACACAC
Found at i:1025638 original size:23 final size:25
Alignment explanation
Indices: 1025607--1025654 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
1025597 TTCTGTTATT
1025607 AACAGAGA-TTCCCGATCTTTGCCA
1 AACAGAGATTTCCCGATCTTTGCCA
1025631 AACA-AGATTTCCCGATCTTTGCCA
1 AACAGAGATTTCCCGATCTTTGCCA
1025655 CATCAAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (25 bp):
AACAGAGATTTCCCGATCTTTGCCA
Found at i:1030211 original size:6 final size:6
Alignment explanation
Indices: 1030200--1030315 Score: 232
Period size: 6 Copynumber: 19.3 Consensus size: 6
1030190 AGGTGACATG
1030200 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1030248 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1030296 CATATA CATATA CATATA CA
1 CATATA CATATA CATATA CA
1030316 GGTATTAACA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 110 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:1040352 original size:26 final size:24
Alignment explanation
Indices: 1040315--1040363 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
1040305 TAACTTTAAA
* *
1040315 TAAATATTATTAAACTAATAATATG
1 TAAATATAATTAAAATAA-AATATG
1040340 TAAACTATAATTAAAATAAAATAT
1 TAAA-TATAATTAAAATAAAATAT
1040364 ATTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (24 bp):
TAAATATAATTAAAATAAAATATG
Found at i:1040651 original size:26 final size:27
Alignment explanation
Indices: 1040622--1040672 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
1040612 TTTAAAAATC
1040622 ATAAAAAATA-AAATCAT-AAAACAACT
1 ATAAAAAATATAAA-CATGAAAACAACT
*
1040648 ATAAAAATTATAAACATGAAAACAA
1 ATAAAAAATATAAACATGAAAACAA
1040673 TTTGTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.69, C:0.10, G:0.02, T:0.20
Consensus pattern (27 bp):
ATAAAAAATATAAACATGAAAACAACT
Found at i:1040857 original size:9 final size:9
Alignment explanation
Indices: 1040834--1040888 Score: 69
Period size: 9 Copynumber: 6.2 Consensus size: 9
1040824 TTAGTCTGTC
1040834 TTAT-ATTT
1 TTATAATTT
1040842 TTA-AATTT
1 TTATAATTT
1040850 TTATAATTT
1 TTATAATTT
*
1040859 TTATACTTT
1 TTATAATTT
1040868 TTATAATATT
1 TTATAAT-TT
*
1040878 TTGTAATTT
1 TTATAATTT
1040887 TT
1 TT
1040889 TTATTAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
8 10 0.24
9 23 0.56
10 8 0.20
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (9 bp):
TTATAATTT
Found at i:1040868 original size:18 final size:17
Alignment explanation
Indices: 1040834--1040955 Score: 59
Period size: 18 Copynumber: 6.7 Consensus size: 17
1040824 TTAGTCTGTC
1040834 TTAT-ATTTTTAAATTT
1 TTATAATTTTTAAATTT
*
1040850 TTATAATTTTTATACTTT
1 TTATAATTTTTA-AATTT
*
1040868 TTATAATATTTTGTAATTTTT
1 TTAT-A-ATTTT-TAA-ATTT
*
1040889 TTATTAATTTATTAAA-AT
1 TTA-TAATTT-TTAAATTT
* *
1040907 TTATTATTTTCTACATTT
1 TTATAATTTT-TAAATTT
* * *
1040925 TTAAATATTTTTCATTTT
1 TTATA-ATTTTTAAATTT
*
1040943 TTACAATATTTTA
1 TTATAAT-TTTTA
1040956 TTTTTGCAAT
Statistics
Matches: 80, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
16 5 0.06
17 17 0.21
18 28 0.35
19 6 0.08
20 13 0.16
21 10 0.12
22 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (17 bp):
TTATAATTTTTAAATTT
Found at i:1040924 original size:26 final size:26
Alignment explanation
Indices: 1040895--1040947 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
1040885 TTTTTTATTA
1040895 ATTTATTAAA-ATTTATT-ATTTTCTAC
1 ATTT-TTAAATATTT-TTCATTTTCTAC
*
1040921 ATTTTTAAATATTTTTCATTTTTTAC
1 ATTTTTAAATATTTTTCATTTTCTAC
1040947 A
1 A
1040948 ATATTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTTTAAATATTTTTCATTTTCTAC
Found at i:1040994 original size:33 final size:33
Alignment explanation
Indices: 1040956--1041022 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
1040946 CAATATTTTA
1040956 TTTTTGCAA-TTTATATAATT-TTTAATTTTAATT
1 TTTTTGCAAGTTT-T-TAATTATTTAATTTTAATT
* *
1040989 TTTTTGCAAGTTTTTAATTATTTTATTTTTATT
1 TTTTTGCAAGTTTTTAATTATTTAATTTTAATT
1041022 T
1 T
1041023 ATAACAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 5 0.17
33 22 0.73
34 3 0.10
ACGTcount: A:0.25, C:0.03, G:0.04, T:0.67
Consensus pattern (33 bp):
TTTTTGCAAGTTTTTAATTATTTAATTTTAATT
Found at i:1042998 original size:21 final size:21
Alignment explanation
Indices: 1042974--1043014 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1042964 AGGAATCAAA
*
1042974 TTTAAATCCTAAACCTTAAAC
1 TTTAAACCCTAAACCTTAAAC
1042995 TTTAAACCCTAAACCTTAAA
1 TTTAAACCCTAAACCTTAAA
1043015 TACTCATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (21 bp):
TTTAAACCCTAAACCTTAAAC
Found at i:1054617 original size:27 final size:27
Alignment explanation
Indices: 1054587--1054644 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
1054577 ATTTTACAAC
*
1054587 TATTCATATCAT-TTAAAATTTTTTTAA
1 TATTCATATCATATT-AAATTATTTTAA
* * *
1054614 TATTTATATTATATTATATTATTTTAA
1 TATTCATATCATATTAAATTATTTTAA
1054641 TATT
1 TATT
1054645 TAATAAGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (27 bp):
TATTCATATCATATTAAATTATTTTAA
Found at i:1054672 original size:15 final size:16
Alignment explanation
Indices: 1054652--1054684 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
1054642 ATTTAATAAG
1054652 TTTATT-AATTTTTTA
1 TTTATTAAATTTTTTA
1054667 TTTATTAAAATTTTTTA
1 TTTATT-AAATTTTTTA
1054684 T
1 T
1054685 ATAGTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTAAATTTTTTA
Found at i:1059617 original size:21 final size:21
Alignment explanation
Indices: 1059591--1059631 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1059581 ATCTGCTCAA
* *
1059591 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
1059612 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
1059632 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:1064345 original size:39 final size:40
Alignment explanation
Indices: 1064285--1064363 Score: 142
Period size: 39 Copynumber: 2.0 Consensus size: 40
1064275 AAGTTTAGAT
1064285 AAAATTCATGCTTACACAAAAATTACAGATAAGGGAAATG
1 AAAATTCATGCTTACACAAAAATTACAGATAAGGGAAATG
*
1064325 AAAATT-ATGCTTACATAAAAATTACAGATAAGGGAAATG
1 AAAATTCATGCTTACACAAAAATTACAGATAAGGGAAATG
1064364 GTTAAAGATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 32 0.84
40 6 0.16
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.24
Consensus pattern (40 bp):
AAAATTCATGCTTACACAAAAATTACAGATAAGGGAAATG
Found at i:1070601 original size:2 final size:2
Alignment explanation
Indices: 1070594--1070624 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1070584 ATGGAATGTA
1070594 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1070625 ATTTGGTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1073605 original size:21 final size:21
Alignment explanation
Indices: 1073581--1073621 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1073571 AGGAATCAAA
*
1073581 TTTAAATCCTAAACCTTAAAC
1 TTTAAACCCTAAACCTTAAAC
*
1073602 TTTAAACCCTAAACTTTAAA
1 TTTAAACCCTAAACCTTAAA
1073622 TACTCATTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (21 bp):
TTTAAACCCTAAACCTTAAAC
Found at i:1073607 original size:14 final size:14
Alignment explanation
Indices: 1073590--1073621 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
1073580 ATTTAAATCC
*
1073590 TAAACCTTAAACTT
1 TAAACCCTAAACTT
1073604 TAAACCCTAAACTT
1 TAAACCCTAAACTT
1073618 TAAA
1 TAAA
1073622 TACTCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAACCCTAAACTT
Found at i:1082622 original size:26 final size:24
Alignment explanation
Indices: 1082585--1082633 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
1082575 TAACTTTAAA
* *
1082585 TAAATATTATTAAACTAATAATATG
1 TAAATATAATTAAAATAA-AATATG
1082610 TAAACTATAATTAAAATAAAATAT
1 TAAA-TATAATTAAAATAAAATAT
1082634 ATTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (24 bp):
TAAATATAATTAAAATAAAATATG
Found at i:1082925 original size:26 final size:27
Alignment explanation
Indices: 1082896--1082946 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
1082886 TTTAAAAATC
1082896 ATAAAAAATA-AAATCAT-AAAACAACT
1 ATAAAAAATATAAA-CATGAAAACAACT
*
1082922 ATAAAAATTATAAACATGAAAACAA
1 ATAAAAAATATAAACATGAAAACAA
1082947 TTTGTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.69, C:0.10, G:0.02, T:0.20
Consensus pattern (27 bp):
ATAAAAAATATAAACATGAAAACAACT
Found at i:1083134 original size:18 final size:18
Alignment explanation
Indices: 1083107--1083153 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
1083097 TTAGTCTGTC
*
1083107 TTAT-ATTTTTAAATTTT
1 TTATAATTTTTAAACTTT
*
1083124 TTATAATTTTTATACTTT
1 TTATAATTTTTAAACTTT
1083142 TTATAATATTTT
1 TTATAAT-TTTT
1083154 TGTAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 4 0.15
18 18 0.69
19 4 0.15
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATAATTTTTAAACTTT
Found at i:1083162 original size:20 final size:18
Alignment explanation
Indices: 1083107--1083163 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
1083097 TTAGTCTGTC
1083107 TTAT-ATTTTTA-AATTTT
1 TTATAATTTTTATAA-TTT
*
1083124 TTATAATTTTTATACTTT
1 TTATAATTTTTATAATTT
*
1083142 TTATAATATTTTTGTAATTT
1 TTAT-A-ATTTTTATAATTT
1083162 TT
1 TT
1083164 TTATTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 4 0.12
18 14 0.42
19 2 0.06
20 13 0.39
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (18 bp):
TTATAATTTTTATAATTT
Found at i:1083199 original size:26 final size:26
Alignment explanation
Indices: 1083170--1083222 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
1083160 TTTTTTATTA
1083170 ATTTATTAAA-ATTTATT-ATTTTCTAC
1 ATTT-TTAAATATTT-TTCATTTTCTAC
*
1083196 ATTTTTAAATATTTTTCATTTTTTAC
1 ATTTTTAAATATTTTTCATTTTCTAC
1083222 A
1 A
1083223 ATATTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTTTAAATATTTTTCATTTTCTAC
Found at i:1083269 original size:33 final size:33
Alignment explanation
Indices: 1083231--1083297 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
1083221 CAATATTTTA
1083231 TTTTTGCAA-TTTATATAATT-TTTAATTTTAATT
1 TTTTTGCAAGTTT-T-TAATTATTTAATTTTAATT
* *
1083264 TTTTTGCAAGTTTTTAATTATTTTATTTTTATT
1 TTTTTGCAAGTTTTTAATTATTTAATTTTAATT
1083297 T
1 T
1083298 ATAACAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 5 0.17
33 22 0.73
34 3 0.10
ACGTcount: A:0.25, C:0.03, G:0.04, T:0.67
Consensus pattern (33 bp):
TTTTTGCAAGTTTTTAATTATTTAATTTTAATT
Found at i:1083364 original size:20 final size:21
Alignment explanation
Indices: 1083341--1083381 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1083331 TATTTTCAAT
1083341 AAAT-TTTCTTGTA-ATTTTTA
1 AAATATTT-TTGTATATTTTTA
1083361 AAATATTTTTGTATATTTTTA
1 AAATATTTTTGTATATTTTTA
1083382 TAATGATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
AAATATTTTTGTATATTTTTA
Found at i:1097232 original size:27 final size:27
Alignment explanation
Indices: 1097202--1097259 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
1097192 ATTTTACAAC
*
1097202 TATTCATATCAT-TTAAAATTTTTTTAA
1 TATTCATATCATATT-AAATTATTTTAA
* * *
1097229 TATTTATATTATATTATATTATTTTAA
1 TATTCATATCATATTAAATTATTTTAA
1097256 TATT
1 TATT
1097260 TAATAAGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (27 bp):
TATTCATATCATATTAAATTATTTTAA
Found at i:1097287 original size:15 final size:16
Alignment explanation
Indices: 1097267--1097299 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
1097257 ATTTAATAAG
1097267 TTTATT-AATTTTTTA
1 TTTATTAAATTTTTTA
1097282 TTTATTAAAATTTTTTA
1 TTTATT-AAATTTTTTA
1097299 T
1 T
1097300 ATAGTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTAAATTTTTTA
Found at i:1103001 original size:30 final size:30
Alignment explanation
Indices: 1102965--1103026 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
1102955 ATAAAAAATT
* *
1102965 ATAAAAA-ATTAATTAATTTATAAAAATGAA
1 ATAAAAATATTAAATAATAT-TAAAAATGAA
1102995 ATAAAAATATTAAATAATATTAAAAATGAA
1 ATAAAAATATTAAATAATATTAAAAATGAA
1103025 AT
1 AT
1103027 TAACCCTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 19 0.66
31 10 0.34
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (30 bp):
ATAAAAATATTAAATAATATTAAAAATGAA
Found at i:1127210 original size:21 final size:21
Alignment explanation
Indices: 1127186--1127225 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1127176 ATTTTTTAAG
1127186 TTTTTATTAAAATTTAATACT
1 TTTTTATTAAAATTTAATACT
* **
1127207 TTTTTTTTAATTTTTAATA
1 TTTTTATTAAAATTTAATA
1127226 AAAGTAGGGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTATTAAAATTTAATACT
Found at i:1132785 original size:19 final size:19
Alignment explanation
Indices: 1132761--1132804 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
1132751 ATGAGAATAA
*
1132761 AATAAAAATGCGAAAACCG
1 AATAAAAATACGAAAACCG
1132780 AATAAAAATACGAAAACCG
1 AATAAAAATACGAAAACCG
1132799 AATAAA
1 AATAAA
1132805 TGATCAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.64, C:0.14, G:0.11, T:0.11
Consensus pattern (19 bp):
AATAAAAATACGAAAACCG
Found at i:1132930 original size:51 final size:51
Alignment explanation
Indices: 1132847--1133062 Score: 335
Period size: 51 Copynumber: 4.3 Consensus size: 51
1132837 ACTTCTGATC
* *
1132847 AGTGACAAATGATAAGTAGTAGCTTCAACTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
1132898 AATGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATTTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
* * *
1132949 AGTGGCAACTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
1133000 AGTGGCAAGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
*
1133050 AGTGATAAGTGAT
1 AGTGACAAGTGAT
1133063 CATACGTAAG
Statistics
Matches: 153, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 36 0.24
51 117 0.76
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:1136319 original size:46 final size:46
Alignment explanation
Indices: 1136270--1136508 Score: 211
Period size: 46 Copynumber: 4.9 Consensus size: 46
1136260 TGGTAGCTTT
1136270 AGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTC
1 AGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAG---TA---TC
* * *
1136322 GGCTATACTTATCTGATCAAGTGATAAAGT-GATAAGTGAT-AGCT-TC
1 AGCTACACTTATCTGATCAAGTGA-CAAGTGGA-AAGTGATAAG-TATC
* *
1136368 GGCTATACTTATCTGATCAAGTGACAAAGT-GATAAGTGAT-AGCT-TC
1 AGCTACACTTATCTGATCAAGTGAC-AAGTGGA-AAGTGATAAG-TATC
1136414 AGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTC
1 AGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAA--G-TA---TC
* *
1136466 GGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGT
1 AGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
1136509 GATAGCTTCG
Statistics
Matches: 166, Mismatches: 10, Indels: 25
0.83 0.05 0.12
Matches are distributed among these distances:
45 11 0.07
46 72 0.43
48 2 0.01
49 1 0.01
50 2 0.01
52 67 0.40
53 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
AGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTATC
Found at i:1136320 original size:52 final size:51
Alignment explanation
Indices: 1136249--1136555 Score: 418
Period size: 52 Copynumber: 6.1 Consensus size: 51
1136239 ATCAAGTGAT
* **
1136249 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
* *
1136301 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG---A-T-
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
*
1136347 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
*
1136393 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
1136445 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
* *
1136496 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTG
1 -AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-AAGTG
1136549 ATAAGTG
1 A-AAGTG
1136556 GCTACACTTA
Statistics
Matches: 233, Mismatches: 11, Indels: 21
0.88 0.04 0.08
Matches are distributed among these distances:
46 87 0.37
48 1 0.00
49 1 0.00
51 1 0.00
52 133 0.57
53 10 0.04
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:1136355 original size:98 final size:97
Alignment explanation
Indices: 1136235--1136555 Score: 454
Period size: 98 Copynumber: 3.3 Consensus size: 97
1136225 TTTGAGTACT
* **
1136235 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-
*
1136300 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
1136333 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
* *
1136393 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
1136425 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1136490 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
1136529 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTG
1136556 GCTACACTTA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.21
95 1 0.01
96 1 0.01
98 114 0.57
101 1 0.01
104 41 0.21
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:1136565 original size:37 final size:37
Alignment explanation
Indices: 1136518--1136627 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
1136508 TGATAGCTTC
*
1136518 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
* *
1136555 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
*
1136592 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
1136627 G
1 G
1136628 ATCATACGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
Found at i:1153379 original size:28 final size:28
Alignment explanation
Indices: 1153320--1153379 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
1153310 AAAAGCCATT
**
1153320 TTTTTTAATATTTACCGAAATGGGCTGG
1 TTTTTTAATATTTACCGAAATGGGCTCA
*
1153348 TTTTTTAATTATTTACCGGAATGGG-TCA
1 TTTTTTAA-TATTTACCGAAATGGGCTCA
1153376 TTTT
1 TTTT
1153380 CCGCGAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.23, C:0.10, G:0.18, T:0.48
Consensus pattern (28 bp):
TTTTTTAATATTTACCGAAATGGGCTCA
Found at i:1154361 original size:29 final size:28
Alignment explanation
Indices: 1154301--1154360 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 28
1154291 GATTTCGCGG
1154301 AAAATGGCCCATTCTAGTAAATAATTAA
1 AAAATGGCCCATTCTAGTAAATAATTAA
1154329 AAAATCGGCCCATT-TCAGTAAAT-ATTAA
1 AAAAT-GGCCCATTCT-AGTAAATAATTAA
1154357 AAAA
1 AAAA
1154361 AGGACTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (28 bp):
AAAATGGCCCATTCTAGTAAATAATTAA
Found at i:1154511 original size:31 final size:31
Alignment explanation
Indices: 1154454--1154512 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
1154444 AGAACTATTC
**
1154454 ATATTATTTTAAATTTTTTAATATTTATACT
1 ATATTATTTTAAATTTAATAATATTTATACT
1154485 ATATTATTTTAATATTTAATAA-ATTTAT
1 ATATTATTTTAA-ATTTAATAATATTTAT
1154513 TAATTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (31 bp):
ATATTATTTTAAATTTAATAATATTTATACT
Found at i:1155070 original size:21 final size:21
Alignment explanation
Indices: 1155046--1155088 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
1155036 GACCTCTAAT
1155046 AATATCATTTTAAATGTTCAA
1 AATATCATTTTAAATGTTCAA
**
1155067 AATATCATTTTCGATGTTCAA
1 AATATCATTTTAAATGTTCAA
1155088 A
1 A
1155089 TTTGTGTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.42
Consensus pattern (21 bp):
AATATCATTTTAAATGTTCAA
Found at i:1155322 original size:30 final size:30
Alignment explanation
Indices: 1155271--1155327 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
1155261 TTTAATAAAA
* * *
1155271 TTTAAATTTTAGTTTTTTATTTTAAAATTT
1 TTTAAATTTTAGTTCTATATTTAAAAATTT
1155301 TTTAAA-TTTAGTCTCTATATTTAAAAA
1 TTTAAATTTTAGT-TCTATATTTAAAAA
1155328 GTTAAAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 6 0.26
30 17 0.74
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (30 bp):
TTTAAATTTTAGTTCTATATTTAAAAATTT
Found at i:1158668 original size:20 final size:21
Alignment explanation
Indices: 1158618--1158669 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
1158608 CGCTTGGAGT
*
1158618 ACTCTTTTCGATATTACTCTA
1 ACTCTTTTCAATATTACTCTA
* *
1158639 ACTTTTTTCAATATTATTCTA
1 ACTCTTTTCAATATTACTCTA
1158660 A-TCTTTTCAA
1 ACTCTTTTCAA
1158670 ATCTGGGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.27, C:0.19, G:0.02, T:0.52
Consensus pattern (21 bp):
ACTCTTTTCAATATTACTCTA
Found at i:1165008 original size:13 final size:13
Alignment explanation
Indices: 1164990--1165014 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1164980 TATTTTAATA
1164990 TTATTTTGTGTGT
1 TTATTTTGTGTGT
1165003 TTATTTTGTGTG
1 TTATTTTGTGTG
1165015 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:1166153 original size:41 final size:40
Alignment explanation
Indices: 1166108--1166420 Score: 402
Period size: 41 Copynumber: 7.7 Consensus size: 40
1166098 CGGACGTTAC
1166108 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAA-TAATTCAGACTTTAA
1166149 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
1166190 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
1166231 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
1166272 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
* *
1166313 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* *
1166354 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTG-AAT-AATTCAGACTTTAA
* **
1166395 GCCTAGCAGGCAAAATGCCGGTGAAT
1 GTCTAGCAGGCTTAATGCCGGTGAAT
1166421 CTGTTTAAAT
Statistics
Matches: 244, Mismatches: 13, Indels: 31
0.85 0.05 0.11
Matches are distributed among these distances:
39 8 0.03
40 7 0.03
41 218 0.89
42 2 0.01
43 8 0.03
44 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (40 bp):
GTCTAGCAGGCTTAATGCCGGTGAATAATTCAGACTTTAA
Found at i:1166208 original size:82 final size:82
Alignment explanation
Indices: 1166108--1166418 Score: 486
Period size: 82 Copynumber: 3.8 Consensus size: 82
1166098 CGGACGTTAC
1166108 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATA-TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1166172 ATACATTTCAGACTTTAA
65 ATACATTTCAGACTTTAA
*
1166190 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1166255 TACATTTCAGACTTTAA
66 TACATTTCAGACTTTAA
*
1166272 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* *
1166337 TACATTTCAGACTATAT
66 TACATTTCAGACTTTAA
* * **
1166354 GTCTAGCAGGC-TAAGTGCCGGTG-TACTGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGG
1 GTCTAGCAGGCTTAA-TGCCGGTGATA-T-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGG
1166416 TGA
63 TGA
1166419 ATCTGTTTAA
Statistics
Matches: 217, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
81 5 0.02
82 210 0.97
83 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (82 bp):
GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAA
Found at i:1166327 original size:123 final size:123
Alignment explanation
Indices: 1166108--1166418 Score: 461
Period size: 123 Copynumber: 2.5 Consensus size: 123
1166098 CGGACGTTAC
1166108 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
* *
1166171 GATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
64 GATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
1166231 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* *
1166296 TATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
66 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
* * * **
1166354 GTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAATCAGGCTTTAAGCCTAGCAGGCAAAATGCCGG
1 GTCTAGCAGGCTTAA-TGCCGGTGATACAT--TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGG
1166416 TGA
63 TGA
1166419 ATCTGTTTAA
Statistics
Matches: 174, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
121 3 0.02
122 8 0.05
123 163 0.94
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
Found at i:1174709 original size:21 final size:22
Alignment explanation
Indices: 1174683--1174729 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
1174673 CTCTGCTCAA
*
1174683 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
1174704 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
1174726 ACTC
1 ACTC
1174730 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:1178261 original size:14 final size:14
Alignment explanation
Indices: 1178242--1178268 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1178232 CATCATTTGC
1178242 CTATAACCAAAACT
1 CTATAACCAAAACT
1178256 CTATAACCAAAAC
1 CTATAACCAAAAC
1178269 CCAAAAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19
Consensus pattern (14 bp):
CTATAACCAAAACT
Found at i:1181420 original size:15 final size:15
Alignment explanation
Indices: 1181400--1181507 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
1181390 TTTATGGAAA
1181400 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
1181415 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
1181429 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
1181445 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
1181459 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
1181475 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
1181489 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
1181505 ATC
1 ATC
1181508 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:1181437 original size:30 final size:30
Alignment explanation
Indices: 1181394--1181517 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
1181384 TCCATATTTA
* *
1181394 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
1181424 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
1181454 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
1181484 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
1181515 TGG
1 TGG
1181518 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:1186111 original size:15 final size:15
Alignment explanation
Indices: 1186091--1186138 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
1186081 TTTATGGAAA
1186091 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
1186106 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
1186120 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
1186136 ATC
1 ATC
1186139 GAGATATTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:1186119 original size:30 final size:31
Alignment explanation
Indices: 1186085--1186148 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
1186075 TCCATATTTA
1186085 TGGAAAATCAAAGATATGGGTATC-AAATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
* *
1186115 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
1186146 TGG
1 TGG
1186149 CATAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 23 0.74
31 8 0.26
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.27
Consensus pattern (31 bp):
TGGAAAATCAAAGATATGGGTATCGAAATAT
Found at i:1188335 original size:73 final size:73
Alignment explanation
Indices: 1188249--1188434 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
1188239 ACAACTTGAC
*
1188249 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACTTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1188314 CACTAACA
66 CACTAACA
1188322 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1188387 CACTAACA
66 CACTAACA
*
1188395 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
1188435 AATAATAATA
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 111 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:1188443 original size:3 final size:3
Alignment explanation
Indices: 1188435--1188466 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1188425 ATTACATCCA
1188435 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1188467 AACATGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1192301 original size:2 final size:2
Alignment explanation
Indices: 1192294--1192324 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1192284 TCAACCAAAT
1192294 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1192325 CTTACATTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1193720 original size:25 final size:26
Alignment explanation
Indices: 1193679--1193729 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
1193669 TCATTAAGCG
* *
1193679 TAATTTTAGTCATTCAAGTT-ATTAT
1 TAATTATAGTCATTCAAATTCATTAT
1193704 TAATTATAGT-ATATCAAATTCATTAT
1 TAATTATAGTCAT-TCAAATTCATTAT
1193730 GTTTCACTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 15 0.68
26 5 0.23
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (26 bp):
TAATTATAGTCATTCAAATTCATTAT
Found at i:1197258 original size:14 final size:14
Alignment explanation
Indices: 1197239--1197270 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
1197229 ACAATGAGTA
*
1197239 TTTAAAGTTTAGGG
1 TTTAAAGTTTAAGG
1197253 TTTAAAGTTTAAGG
1 TTTAAAGTTTAAGG
1197267 TTTA
1 TTTA
1197271 GGATTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TTTAAAGTTTAAGG
Found at i:1197263 original size:21 final size:21
Alignment explanation
Indices: 1197239--1197279 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1197229 ACAATGAGTA
*
1197239 TTTAAAGTTTAGGGTTTAAAG
1 TTTAAAGTTTAGGATTTAAAG
*
1197260 TTTAAGGTTTAGGATTTAAA
1 TTTAAAGTTTAGGATTTAAA
1197280 TTTGATTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (21 bp):
TTTAAAGTTTAGGATTTAAAG
Found at i:1198946 original size:24 final size:24
Alignment explanation
Indices: 1198902--1198949 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
1198892 GATTCATCCA
**
1198902 TACTAAAATAAATTATTTTAAAAT
1 TACTAAAATAAATTAAGTTAAAAT
1198926 TACTAAAAATAAA-TAAGTTAAAAT
1 TACT-AAAATAAATTAAGTTAAAAT
1198950 AAATTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.35
Consensus pattern (24 bp):
TACTAAAATAAATTAAGTTAAAAT
Found at i:1199204 original size:20 final size:21
Alignment explanation
Indices: 1199164--1199204 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1199154 ATAATCATTA
1199164 TAAAAATATACAAAAATATTT
1 TAAAAATATACAAAAATATTT
1199185 TAAAAAT-TACAAGAAA-ATTT
1 TAAAAATATACAA-AAATATTT
1199205 ATTGAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (21 bp):
TAAAAATATACAAAAATATTT
Found at i:1199290 original size:33 final size:33
Alignment explanation
Indices: 1199248--1199314 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
1199238 AAATTGTTAT
1199248 AAATAAAAATAAAATAATTA-A-AAACTTGCAAAA
1 AAATAAAAATAAAA-AATTATATAAA-TTGCAAAA
* *
1199281 AAATTAAAATTAAAAATTATATAAATTGCAAAA
1 AAATAAAAATAAAAAATTATATAAATTGCAAAA
1199314 A
1 A
1199315 TAAAATATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 5 0.17
33 22 0.73
34 3 0.10
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.25
Consensus pattern (33 bp):
AAATAAAAATAAAAAATTATATAAATTGCAAAA
Found at i:1199330 original size:17 final size:17
Alignment explanation
Indices: 1199310--1199348 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
1199300 TATAAATTGC
1199310 AAAAAT-AAAATATTGTA
1 AAAAATAAAAATATT-TA
1199327 AAAAATGAAAAATATTTA
1 AAAAAT-AAAAATATTTA
1199345 AAAA
1 AAAA
1199349 TGTAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 6 0.30
19 8 0.40
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (17 bp):
AAAAATAAAAATATTTA
Found at i:1199337 original size:24 final size:23
Alignment explanation
Indices: 1199278--1199340 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
1199268 AAAACTTGCA
* *
1199278 AAAAAATTAAAATTAAAAATTAT
1 AAAAAATGAAAAATAAAAATTAT
* * *
1199301 ATAAATTGCAAAAATAAAATATTGT
1 AAAAAATG-AAAAATAAAA-ATTAT
1199326 AAAAAATGAAAAATA
1 AAAAAATGAAAAATA
1199341 TTTAAAAATG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
23 5 0.16
24 16 0.52
25 10 0.32
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.27
Consensus pattern (23 bp):
AAAAAATGAAAAATAAAAATTAT
Found at i:1199420 original size:18 final size:18
Alignment explanation
Indices: 1199392--1199438 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
1199382 AAAAATTACA
*
1199392 AAAATATTATAAAAAGTAT
1 AAAA-ATTATAAAAAATAT
*
1199411 AAAAATTATAAAAAATTT
1 AAAAATTATAAAAAATAT
1199429 AAAAA-TATAA
1 AAAAATTATAA
1199439 GACAGACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 5 0.19
18 17 0.65
19 4 0.15
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AAAAATTATAAAAAATAT
Found at i:1199425 original size:11 final size:10
Alignment explanation
Indices: 1199357--1199433 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
1199347 AATGTAGAAA
*
1199357 ATAATAAATT
1 ATAAAAAATT
* *
1199367 TTAATAAATT
1 ATAAAAAATT
1199377 AATAAAAAAATT
1 -AT-AAAAAATT
*
1199389 ACAAAAATATT
1 ATAAAAA-ATT
*
1199400 AT-AAAAAGT
1 ATAAAAAATT
1199409 AT-AAAAATT
1 ATAAAAAATT
1199418 ATAAAAAATT
1 ATAAAAAATT
1199428 -TAAAAA
1 ATAAAAA
1199434 TATAAGACAG
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
9 18 0.32
10 25 0.45
11 6 0.11
12 7 0.12
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:1199632 original size:27 final size:26
Alignment explanation
Indices: 1199599--1199649 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
1199589 TTTATACAAA
1199599 TTGTTTTCATG-TTTATAATTTTTATAG
1 TTGTTTT-ATGATTT-TAATTTTTATAG
*
1199626 TTGTTTTATGATTTTATTTTTTAT
1 TTGTTTTATGATTTTAATTTTTAT
1199650 GATTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.20, C:0.02, G:0.10, T:0.69
Consensus pattern (26 bp):
TTGTTTTATGATTTTAATTTTTATAG
Found at i:1216567 original size:73 final size:73
Alignment explanation
Indices: 1216481--1216666 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
1216471 ACAACTTGAC
*
1216481 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACTTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1216546 CACTAACA
66 CACTAACA
1216554 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1216619 CACTAACA
66 CACTAACA
*
1216627 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
1216667 AATAATAATA
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 111 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:1216675 original size:3 final size:3
Alignment explanation
Indices: 1216667--1216707 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
1216657 ATTACATCCA
1216667 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1216708 AACATGTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:1220544 original size:2 final size:2
Alignment explanation
Indices: 1220537--1220563 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1220527 TCAACCAAAT
1220537 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1220564 CTTACATTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1221959 original size:25 final size:26
Alignment explanation
Indices: 1221918--1221968 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
1221908 TCATTAAGCG
* *
1221918 TAATTTTAGTCATTCAAGTT-ATTAT
1 TAATTATAGTCATTCAAATTCATTAT
1221943 TAATTATAGT-ATATCAAATTCATTAT
1 TAATTATAGTCAT-TCAAATTCATTAT
1221969 GTTTCACTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 15 0.68
26 5 0.23
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (26 bp):
TAATTATAGTCATTCAAATTCATTAT
Found at i:1225499 original size:14 final size:14
Alignment explanation
Indices: 1225480--1225511 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
1225470 ACAATGAGTA
*
1225480 TTTAAAGTTTAGGG
1 TTTAAAGTTTAAGG
1225494 TTTAAAGTTTAAGG
1 TTTAAAGTTTAAGG
1225508 TTTA
1 TTTA
1225512 GGATTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TTTAAAGTTTAAGG
Found at i:1225504 original size:21 final size:21
Alignment explanation
Indices: 1225480--1225520 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1225470 ACAATGAGTA
*
1225480 TTTAAAGTTTAGGGTTTAAAG
1 TTTAAAGTTTAGGATTTAAAG
*
1225501 TTTAAGGTTTAGGATTTAAA
1 TTTAAAGTTTAGGATTTAAA
1225521 TTTGATTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (21 bp):
TTTAAAGTTTAGGATTTAAAG
Found at i:1227187 original size:24 final size:24
Alignment explanation
Indices: 1227143--1227190 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
1227133 GATTCATCCA
**
1227143 TACTAAAATAAATTATTTTAAAAT
1 TACTAAAATAAATTAAGTTAAAAT
1227167 TACTAAAAATAAA-TAAGTTAAAAT
1 TACT-AAAATAAATTAAGTTAAAAT
1227191 AAATTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.35
Consensus pattern (24 bp):
TACTAAAATAAATTAAGTTAAAAT
Found at i:1227444 original size:20 final size:21
Alignment explanation
Indices: 1227404--1227444 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1227394 ATAATCATTA
1227404 TAAAAATATACAAAAATATTT
1 TAAAAATATACAAAAATATTT
1227425 TAAAAAT-TACAAGAAA-ATTT
1 TAAAAATATACAA-AAATATTT
1227445 ATTGAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (21 bp):
TAAAAATATACAAAAATATTT
Found at i:1227530 original size:33 final size:33
Alignment explanation
Indices: 1227488--1227554 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
1227478 AAATTGTTAT
1227488 AAATAAAAATAAAATAATTA-A-AAACTTGCAAAA
1 AAATAAAAATAAAA-AATTATATAAA-TTGCAAAA
* *
1227521 AAATTAAAATTAAAAATTATATAAATTGCAAAA
1 AAATAAAAATAAAAAATTATATAAATTGCAAAA
1227554 A
1 A
1227555 TAAAATATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 5 0.17
33 22 0.73
34 3 0.10
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.25
Consensus pattern (33 bp):
AAATAAAAATAAAAAATTATATAAATTGCAAAA
Found at i:1227570 original size:17 final size:17
Alignment explanation
Indices: 1227550--1227588 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
1227540 TATAAATTGC
1227550 AAAAAT-AAAATATTGTA
1 AAAAATAAAAATATT-TA
1227567 AAAAATGAAAAATATTTA
1 AAAAAT-AAAAATATTTA
1227585 AAAA
1 AAAA
1227589 TGTAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 6 0.30
19 8 0.40
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (17 bp):
AAAAATAAAAATATTTA
Found at i:1227577 original size:24 final size:23
Alignment explanation
Indices: 1227518--1227580 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
1227508 AAAACTTGCA
* *
1227518 AAAAAATTAAAATTAAAAATTAT
1 AAAAAATGAAAAATAAAAATTAT
* * *
1227541 ATAAATTGCAAAAATAAAATATTGT
1 AAAAAATG-AAAAATAAAA-ATTAT
1227566 AAAAAATGAAAAATA
1 AAAAAATGAAAAATA
1227581 TTTAAAAATG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
23 5 0.16
24 16 0.52
25 10 0.32
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.27
Consensus pattern (23 bp):
AAAAAATGAAAAATAAAAATTAT
Found at i:1227628 original size:11 final size:10
Alignment explanation
Indices: 1227597--1227672 Score: 68
Period size: 10 Copynumber: 7.7 Consensus size: 10
1227587 AATGTAGAAA
*
1227597 ATAATAAATT
1 ATAAAAAATT
* *
1227607 TTAATAAATT
1 ATAAAAAATT
1227617 AATAAAAAATT
1 -ATAAAAAATT
*
1227628 ACAAAAATATT
1 ATAAAAA-ATT
*
1227639 AT-AAAAAGT
1 ATAAAAAATT
1227648 AT-AAAAATT
1 ATAAAAAATT
1227657 ATAAAAAATT
1 ATAAAAAATT
1227667 -TAAAAA
1 ATAAAAA
1227673 TATAAGACAG
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
9 18 0.32
10 26 0.46
11 12 0.21
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:1227659 original size:18 final size:18
Alignment explanation
Indices: 1227612--1227677 Score: 62
Period size: 18 Copynumber: 3.5 Consensus size: 18
1227602 AAATTTTAAT
*
1227612 AAATTAATAAAAAATTACAAA
1 AAATT-ATAAAAAA-TA-TAA
*
1227633 AATATTATAAAAAGTATAA
1 AA-ATTATAAAAAATATAA
*
1227652 AAATTATAAAAAATTTAA
1 AAATTATAAAAAATATAA
1227670 AAA-TATAA
1 AAATTATAA
1227678 GACAGACTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 5 0.12
18 17 0.43
19 4 0.10
20 2 0.05
21 9 0.22
22 3 0.08
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
AAATTATAAAAAATATAA
Found at i:1227870 original size:27 final size:26
Alignment explanation
Indices: 1227837--1227887 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
1227827 TTTATACAAA
1227837 TTGTTTTCATG-TTTATAATTTTTATAG
1 TTGTTTT-ATGATTT-TAATTTTTATAG
*
1227864 TTGTTTTATGATTTTATTTTTTAT
1 TTGTTTTATGATTTTAATTTTTAT
1227888 GATTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.20, C:0.02, G:0.10, T:0.69
Consensus pattern (26 bp):
TTGTTTTATGATTTTAATTTTTATAG
Found at i:1250770 original size:40 final size:40
Alignment explanation
Indices: 1250726--1250803 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
1250716 TTAAAAATAG
*
1250726 GGATTTAAGATAAATTTA-AGAGGAAATTGAGAGCAAATGT
1 GGATTTAAGAGAAATTTAGA-AGGAAATTGAGAGCAAATGT
* * *
1250766 GGATTTGAGAGAAATTTGGAAGGAATTTGAGAGCAAAT
1 GGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAAT
1250804 TGAGAGGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.28, T:0.27
Consensus pattern (40 bp):
GGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATGT
Found at i:1250782 original size:11 final size:11
Alignment explanation
Indices: 1250768--1250822 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
1250758 GCAAATGTGG
1250768 ATTTGAGAGAA
1 ATTTGAGAGAA
*
1250779 ATTTG-GAAGGA
1 ATTTGAG-AGAA
1250790 ATTTGAGAGCAA
1 ATTTGAGAG-AA
1250802 A-TTGAGAGGAA
1 ATTTGAGA-GAA
1250813 ATTTGAGAGA
1 ATTTGAGAGA
1250823 GGATTAGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
10 1 0.03
11 26 0.70
12 10 0.27
ACGTcount: A:0.42, C:0.02, G:0.31, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:1250785 original size:17 final size:18
Alignment explanation
Indices: 1250752--1250785 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1250742 TAAGAGGAAA
1250752 TTGAGAGCAAATGTGGAT
1 TTGAGAGCAAATGTGGAT
*
1250770 TTGAGAG-AAATTTGGA
1 TTGAGAGCAAATGTGGA
1250786 AGGAATTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.29
Consensus pattern (18 bp):
TTGAGAGCAAATGTGGAT
Found at i:1250815 original size:23 final size:22
Alignment explanation
Indices: 1250768--1250822 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
1250758 GCAAATGTGG
1250768 ATTTGAGAGAAATTTGGAAGGA
1 ATTTGAGAGAAATTTGGAAGGA
1250790 ATTTGAGAGCAAA-TT-GAGAGGAA
1 ATTTGAGAG-AAATTTGGA-AGG-A
1250813 ATTTGAGAGA
1 ATTTGAGAGA
1250823 GGATTAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.07
22 15 0.50
23 13 0.43
ACGTcount: A:0.42, C:0.02, G:0.31, T:0.25
Consensus pattern (22 bp):
ATTTGAGAGAAATTTGGAAGGA
Found at i:1251756 original size:6 final size:6
Alignment explanation
Indices: 1251747--1251775 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
1251737 CATGTTCATA
1251747 TATATG TATATG TATATG TATATG TATAT
1 TATATG TATATG TATATG TATATG TATAT
1251776 TTAAGGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:1252021 original size:17 final size:18
Alignment explanation
Indices: 1251996--1252031 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
1251986 CTGATCAGGC
*
1251996 ATTGGTTCGTC-AGTCTA
1 ATTGATTCGTCTAGTCTA
1252013 ATTGATTCGTCTAGTCTA
1 ATTGATTCGTCTAGTCTA
1252031 A
1 A
1252032 CCACTTCGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (18 bp):
ATTGATTCGTCTAGTCTA
Found at i:1254940 original size:22 final size:22
Alignment explanation
Indices: 1254887--1254949 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
1254877 AATTATAATC
*
1254887 ATTA-TAAAAATATACAAAAAT
1 ATTATTAAAAATATACAAAAAA
*
1254908 ATTTTTAAAAAT-TACAAAAGAA
1 ATTATTAAAAATATACAAAA-AA
*
1254930 ATTATTGAAAAA-ATAGAAAA
1 ATTATT-AAAAATATACAAAA
1254950 TTGCACAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 10 0.29
22 13 0.38
23 11 0.32
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (22 bp):
ATTATTAAAAATATACAAAAAA
Found at i:1255079 original size:21 final size:20
Alignment explanation
Indices: 1255053--1255096 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
1255043 TTGCAAAAAG
1255053 AAAATATTGTAAAAA-ATATGA
1 AAAATATT-TAAAAATATA-GA
1255074 AAAATATTTAAAAATATAGA
1 AAAATATTTAAAAATATAGA
1255094 AAA
1 AAA
1255097 TAATAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (20 bp):
AAAATATTTAAAAATATAGA
Found at i:1255088 original size:19 final size:22
Alignment explanation
Indices: 1255053--1255096 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
1255043 TTGCAAAAAG
1255053 AAAATATTGTAAAAAATAT-GA
1 AAAATATTGTAAAAAATATAGA
1255074 AAAATATT-T-AAAAATATAGA
1 AAAATATTGTAAAAAATATAGA
1255094 AAA
1 AAA
1255097 TAATAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 6 0.27
21 8 0.36
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (22 bp):
AAAATATTGTAAAAAATATAGA
Found at i:1255097 original size:19 final size:19
Alignment explanation
Indices: 1255047--1255098 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
1255037 TATAAATTGC
1255047 AAAA-AGAAAATATTGTAA
1 AAAATAGAAAATATTGTAA
1255065 AAAATATGAAAAATATT-TAA
1 AAAATA-G-AAAATATTGTAA
1255085 AAATATAGAAAATA
1 AAA-ATAGAAAATA
1255099 ATAAATTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.13
19 7 0.23
20 8 0.27
21 11 0.37
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (19 bp):
AAAATAGAAAATATTGTAA
Found at i:1260576 original size:21 final size:22
Alignment explanation
Indices: 1260527--1260577 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
1260517 TATCCTGCCA
* *
1260527 AAAATTATTGGTATTTTTAAAT
1 AAAATTATTAGTATTATTAAAT
* *
1260549 GAAATTATTAGTA-TATTATAT
1 AAAATTATTAGTATTATTAAAT
1260570 AAAATTAT
1 AAAATTAT
1260578 ATAAAGAGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (22 bp):
AAAATTATTAGTATTATTAAAT
Found at i:1269063 original size:7 final size:7
Alignment explanation
Indices: 1269039--1269166 Score: 50
Period size: 7 Copynumber: 17.7 Consensus size: 7
1269029 ATTATTTTAA
1269039 ATTATAT
1 ATTATAT
*
1269046 TTTATAGT
1 ATTATA-T
1269054 ATTATAT
1 ATTATAT
1269061 ATTATGAT
1 ATTAT-AT
* *
1269069 TTTAGTAA
1 ATTA-TAT
1269077 ATTCATAT
1 ATT-ATAT
*
1269085 AATA-AT
1 ATTATAT
1269091 ATT-TAAT
1 ATTAT-AT
* *
1269098 ACTACATAG
1 A-T-TATAT
*
1269107 ATTATAA
1 ATTATAT
1269114 ATTATAT
1 ATTATAT
1269121 -TTA-AT
1 ATTATAT
1269126 AATTAT-T
1 -ATTATAT
* *
1269133 ATTTTAA
1 ATTATAT
1269140 ATTATAT
1 ATTATAT
*
1269147 TTTATAGT
1 ATTATA-T
1269155 ATTATAT
1 ATTATAT
1269162 ATTAT
1 ATTAT
1269167 GATTTTAGTA
Statistics
Matches: 88, Mismatches: 19, Indels: 28
0.65 0.14 0.21
Matches are distributed among these distances:
5 2 0.02
6 11 0.12
7 44 0.50
8 26 0.30
9 4 0.05
10 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (7 bp):
ATTATAT
Done.