Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 39 of 216
Found at i:11037553 original size:44 final size:45
Alignment explanation
Indices: 11037458--11037554 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 45
11037448 GAATAGAGGC
* *
11037458 GTAATGAAATAGAGGCGTAATAGCAATTCAATTGTTTGGTTGAAT
1 GTAATGGAATAGAAGCGTAATAGCAATTCAATTGTTTGGTTGAAT
* *
11037503 GTAATGGAATAGAAGCGTAATAG-TATTC-TTGTGTTTGGTTGAAT
1 GTAATGGAATAGAAGCGTAATAGCAATTCAAT-TGTTTGGTTGAAT
11037547 GTAATGGA
1 GTAATGGA
11037555 GGTGTAATAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 25 0.53
45 21 0.45
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (45 bp):
GTAATGGAATAGAAGCGTAATAGCAATTCAATTGTTTGGTTGAAT
Found at i:11037732 original size:18 final size:17
Alignment explanation
Indices: 11037711--11037745 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11037701 TTATTATTAA
*
11037711 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
11037729 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
11037746 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:11037852 original size:18 final size:17
Alignment explanation
Indices: 11037831--11037865 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11037821 TTATTATTAA
*
11037831 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
11037849 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
11037866 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:11037904 original size:120 final size:120
Alignment explanation
Indices: 11037691--11038010 Score: 606
Period size: 120 Copynumber: 2.7 Consensus size: 120
11037681 TTAATCATAT
11037691 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
11037756 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
11037811 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
11037876 CAATATTTTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
* *
11037931 TTTAACATAATTATTATTAAATATATTTCAATTAAAATACATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
11037996 CAATATTCTTA-ATAA
66 CAATATTCTTATATAA
11038011 TCAATATTCT
Statistics
Matches: 196, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
119 4 0.02
120 192 0.98
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:11038005 original size:16 final size:16
Alignment explanation
Indices: 11037984--11038022 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
11037974 ATTTAATAAA
11037984 ATTCTTAATAATCAAT
1 ATTCTTAATAATCAAT
11038000 ATTCTTAATAATCAAT
1 ATTCTTAATAATCAAT
11038016 ATTCTTA
1 ATTCTTA
11038023 TAACAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTCTTAATAATCAAT
Found at i:11041867 original size:269 final size:269
Alignment explanation
Indices: 11041388--11041910 Score: 1037
Period size: 269 Copynumber: 1.9 Consensus size: 269
11041378 GACGTAATGG
11041388 CAATACAACCAACCAAACAACGGATTAAAGGGGGATTAAGTTGGGCCCACCGATTAGGATAGCCA
1 CAATACAACCAACCAAACAACGGATTAAAGGGGGATTAAGTTGGGCCCACCGATTAGGATAGCCA
11041453 ATACACCCAACCAAACATGGTGTTAGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCCCT
66 ATACACCCAACCAAACATGGTGTTAGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCCCT
11041518 CATGAAAACATCACATACTTTCTCATGTTTTACATTTTCAATCTTGAATACTAGTTTTTCAAATG
131 CATGAAAACATCACATACTTTCTCATGTTTTACATTTTCAATCTTGAATACTAGTTTTTCAAATG
11041583 ACTATTTGAATGTATAGCTAAGCATTTATATTACCATTCTTTTAAAAGTCATGAGTGAGACCGAT
196 ACTATTTGAATGTATAGCTAAGCATTTATATTACCATTCTTTTAAAAGTCATGAGTGAGACCGAT
11041648 TAGGATAGC
261 TAGGATAGC
*
11041657 CAATACACCCAACCAAACAACGGATTAAAGGGGGATTAAGTTGGGCCCACCGATTAGGATAGCCA
1 CAATACAACCAACCAAACAACGGATTAAAGGGGGATTAAGTTGGGCCCACCGATTAGGATAGCCA
11041722 ATACACCCAACCAAACATGGTGTTAGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCCCT
66 ATACACCCAACCAAACATGGTGTTAGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCCCT
11041787 CATGAAAACATCACATACTTTCTCATGTTTTACATTTTCAATCTTGAATACTAGTTTTTCAAATG
131 CATGAAAACATCACATACTTTCTCATGTTTTACATTTTCAATCTTGAATACTAGTTTTTCAAATG
11041852 ACTATTTGAATGTATAGCTAAGCATTTATATTACCATTCTTTTAAAAGTCATGAGTGAG
196 ACTATTTGAATGTATAGCTAAGCATTTATATTACCATTCTTTTAAAAGTCATGAGTGAG
11041911 GGAAATTTGG
Statistics
Matches: 253, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
269 253 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (269 bp):
CAATACAACCAACCAAACAACGGATTAAAGGGGGATTAAGTTGGGCCCACCGATTAGGATAGCCA
ATACACCCAACCAAACATGGTGTTAGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCCCT
CATGAAAACATCACATACTTTCTCATGTTTTACATTTTCAATCTTGAATACTAGTTTTTCAAATG
ACTATTTGAATGTATAGCTAAGCATTTATATTACCATTCTTTTAAAAGTCATGAGTGAGACCGAT
TAGGATAGC
Found at i:11047338 original size:27 final size:27
Alignment explanation
Indices: 11047279--11047339 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
11047269 ATTTAACAGA
* * *
11047279 ACCATTCCTTCAAAGTTTGCCATACTT
1 ACCATTCCTTCAAAATTAGCCATACAT
* * *
11047306 ATCATTCCTTCAAAATTAGCCGTTCAT
1 ACCATTCCTTCAAAATTAGCCATACAT
11047333 ACCATTC
1 ACCATTC
11047340 TCTCGGAGTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.36
Consensus pattern (27 bp):
ACCATTCCTTCAAAATTAGCCATACAT
Found at i:11047491 original size:28 final size:28
Alignment explanation
Indices: 11047460--11047515 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
11047450 TTCTTTTCCT
* *
11047460 TAGATCGCCAAAAATGCCTCCATTTTCA
1 TAGATCACCAAAAAGGCCTCCATTTTCA
* * *
11047488 TAGATTACCATAAAGGCTTCCATTTTCA
1 TAGATCACCAAAAAGGCCTCCATTTTCA
11047516 CAATATGGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32
Consensus pattern (28 bp):
TAGATCACCAAAAAGGCCTCCATTTTCA
Found at i:11048946 original size:44 final size:44
Alignment explanation
Indices: 11048883--11048967 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
11048873 TAATTGTAAT
* * **
11048883 TTAAATTGTAATTCTTTTTAAATGTGTAATTAGT-ACAACTTTGA
1 TTAAATTATAATTATTTTTAAATGAATAATTA-TAACAACTTTGA
11048927 TTAAATTATAATTATTTTTAAATGAATAATTATAACAACTT
1 TTAAATTATAATTATTTTTAAATGAATAATTATAACAACTT
11048968 CTATTATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 1 0.03
44 35 0.97
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.47
Consensus pattern (44 bp):
TTAAATTATAATTATTTTTAAATGAATAATTATAACAACTTTGA
Found at i:11049752 original size:11 final size:11
Alignment explanation
Indices: 11049736--11049768 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
11049726 AATAAACTTT
11049736 GTAATTTTATA
1 GTAATTTTATA
*
11049747 GTAATTTTATT
1 GTAATTTTATA
11049758 GTAATTTTATA
1 GTAATTTTATA
11049769 TTTTCTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (11 bp):
GTAATTTTATA
Found at i:11050134 original size:3 final size:3
Alignment explanation
Indices: 11050126--11050196 Score: 126
Period size: 3 Copynumber: 24.0 Consensus size: 3
11050116 TTTATGCAAT
11050126 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
11050174 AGA AGA AGA AGA ATA AG- AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA
11050197 GAAAAAATAA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 63 0.97
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.01
Consensus pattern (3 bp):
AGA
Found at i:11055913 original size:30 final size:28
Alignment explanation
Indices: 11055877--11055936 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
11055867 ATAAAAATGA
*
11055877 TAAAATTTATTAAATTTATAAAAAAATATT
1 TAAAATTTATTAAA--AATAAAAAAATATT
*
11055907 TAAAATTTATTAAAAATTAAAAAATATT
1 TAAAATTTATTAAAAATAAAAAAATATT
11055935 TA
1 TA
11055937 TAAAATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 14 0.50
30 14 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (28 bp):
TAAAATTTATTAAAAATAAAAAAATATT
Found at i:11055941 original size:30 final size:30
Alignment explanation
Indices: 11055876--11055981 Score: 87
Period size: 30 Copynumber: 3.6 Consensus size: 30
11055866 GATAAAAATG
* *
11055876 ATAAAATTTATT-AAATTTATAAAAAAATATT
1 ATAAAATTTATTAAAAATTA-GAAAAAAT-TT
11055907 -TAAAATTTATTAAAAATTA-AAAAATATTT
1 ATAAAATTTATTAAAAATTAGAAAAA-ATTT
* * *
11055936 ATAAAATGTA-TAGAAATGTAGAAAAAAATT
1 ATAAAATTTATTAAAAAT-TAGAAAAAATTT
*
11055966 ATAAAA-TTATAAAAAA
1 ATAAAATTTATTAAAAA
11055982 AGTTATAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
29 15 0.24
30 36 0.58
31 11 0.18
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (30 bp):
ATAAAATTTATTAAAAATTAGAAAAAATTT
Found at i:11055972 original size:20 final size:19
Alignment explanation
Indices: 11055938--11056031 Score: 66
Period size: 21 Copynumber: 4.6 Consensus size: 19
11055928 AAATATTTAT
11055938 AAAATGTATAGAAATGTAGAAA
1 AAAAT-TATA-AAAT-TAGAAA
*
11055960 AAAATTATAAAATTATAAA
1 AAAATTATAAAATTAGAAA
11055979 AAAAGTTATAAAAATT-GTAAA
1 AAAA-TTAT-AAAATTAG-AAA
* * *
11056000 GAAA-TATAAATTTCATAAA
1 AAAATTATAAAATT-AGAAA
11056019 ACAAATTATAAAA
1 A-AAATTATAAAA
11056032 ATTATAGTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
18 5 0.09
19 15 0.26
20 11 0.19
21 22 0.38
22 5 0.09
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (19 bp):
AAAATTATAAAATTAGAAA
Found at i:11057367 original size:125 final size:125
Alignment explanation
Indices: 11057002--11057417 Score: 604
Period size: 125 Copynumber: 3.3 Consensus size: 125
11056992 CGTGGACGCA
* * * * *
11057002 AAGAATTTGTGAAATCGTGCCCTCCTGGACGCACTTTTGCTACAGTTGGTCCTGAAAGAAATAAT
1 AAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAAT
11057067 TTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAG
66 TTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAG
* * * * * *
11057127 AAGAATTTGTTAAATCGCACCCACGTGGACGCGCTTTTGCTACAGTAGGTCAT-GAAAAAATTAT
1 AAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAAT
* * * * *
11057191 TTTGAGTTTACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAGC-AGGATGCTATT-TAAG
66 TTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTA-CTAGGATGCT-TTATGAG
* * *
11057251 AAGCATTTCTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAAT
1 AAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAAT
* *
11057316 TTCGAGTTGATGTTTCTGAACAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAG
66 TTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAG
11057376 AAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTA
1 AAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTA
11057418 TAGTAACATG
Statistics
Matches: 251, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
124 107 0.43
125 144 0.57
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (125 bp):
AAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAAT
TTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAG
Found at i:11059960 original size:45 final size:45
Alignment explanation
Indices: 11059909--11060024 Score: 189
Period size: 45 Copynumber: 2.6 Consensus size: 45
11059899 TAAGCTCATG
*
11059909 TTATTACATCAAATAATTTCAAAATAACTCAAAA-AAATTTCTATT
1 TTATTACATCAAATAATATCAAAATAACTCAAAACAAA-TTCTATT
*
11059954 TTATTACATCAAATAATATCGAAATAACTCAAAACAAATTCTATT
1 TTATTACATCAAATAATATCAAAATAACTCAAAACAAATTCTATT
*
11059999 TTATTACATAAAATAATATCAAAATA
1 TTATTACATCAAATAATATCAAAATA
11060025 TTCAAAATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
45 63 0.95
46 3 0.05
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.35
Consensus pattern (45 bp):
TTATTACATCAAATAATATCAAAATAACTCAAAACAAATTCTATT
Found at i:11062337 original size:51 final size:51
Alignment explanation
Indices: 11062276--11062373 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
11062266 AATTATTTAA
11062276 AAATAGGGATTTAAGAG-AAATTT-AAGAAGAACTTGAGAGCAAATTGAAATT
1 AAATAGGGATTTAAGAGAAAATTTGAAG--GAACTTGAGAGCAAATTGAAATT
* * * *
11062327 AAATATGGATTTGAGAGAAAATTTGAAGGAATTTGATAGCAAATTGA
1 AAATAGGGATTTAAGAGAAAATTTGAAGGAACTTGAGAGCAAATTGA
11062374 GAGGAAATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
51 32 0.78
52 6 0.15
53 3 0.07
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.28
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAAATTTGAAGGAACTTGAGAGCAAATTGAAATT
Found at i:11062360 original size:22 final size:23
Alignment explanation
Indices: 11062335--11062399 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
11062325 TTAAATATGG
11062335 ATTTGAGAGAAAATTTGA-AGGA
1 ATTTGAGAGAAAATTTGAGAGGA
* *
11062357 ATTTGATAGCAAA-TTGAGAGGA
1 ATTTGAGAGAAAATTTGAGAGGA
* *
11062379 AATTGAGAGGAAATTTGAGAG
1 ATTTGAGAGAAAATTTGAGAG
11062400 AGGATTAGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.11
22 25 0.69
23 7 0.19
ACGTcount: A:0.43, C:0.02, G:0.29, T:0.26
Consensus pattern (23 bp):
ATTTGAGAGAAAATTTGAGAGGA
Found at i:11062403 original size:14 final size:11
Alignment explanation
Indices: 11062337--11062399 Score: 65
Period size: 11 Copynumber: 5.6 Consensus size: 11
11062327 AAATATGGAT
*
11062337 TTGAGAGAAAA
1 TTGAGAGGAAA
*
11062348 TTTGA-AGGAAT
1 -TTGAGAGGAAA
* *
11062359 TTGATAGCAAA
1 TTGAGAGGAAA
11062370 TTGAGAGGAAA
1 TTGAGAGGAAA
11062381 TTGAGAGGAAA
1 TTGAGAGGAAA
11062392 TTTGAGAG
1 -TTGAGAG
11062400 AGGATTAGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
10 4 0.09
11 28 0.65
12 11 0.26
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.25
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:11065989 original size:94 final size:94
Alignment explanation
Indices: 11065879--11066063 Score: 343
Period size: 94 Copynumber: 2.0 Consensus size: 94
11065869 ATCCATTGCG
*
11065879 GATGTACTCTATATATTTAAAAGATCATAATCTCATTTTCATATCAAGTGTGTTGAACTTGAATG
1 GATGTACTCTATATATTTAAAAGATCATAATCTCATTTTCATATCAAGCGTGTTGAACTTGAATG
*
11065944 CCTTTGGACTCAACTAGTAACTTTGGCAA
66 CCTTTGGACTCAACTAATAACTTTGGCAA
*
11065973 GATGTACTCTATATATTTAAAAGATCATAATCTCATTTTCTTATCAAGCGTGTTGAACTTGAATG
1 GATGTACTCTATATATTTAAAAGATCATAATCTCATTTTCATATCAAGCGTGTTGAACTTGAATG
11066038 CCTTTGGACTCAACTAATAACTTTGG
66 CCTTTGGACTCAACTAATAACTTTGG
11066064 TTACCATTGT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (94 bp):
GATGTACTCTATATATTTAAAAGATCATAATCTCATTTTCATATCAAGCGTGTTGAACTTGAATG
CCTTTGGACTCAACTAATAACTTTGGCAA
Found at i:11078248 original size:19 final size:19
Alignment explanation
Indices: 11078201--11078248 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
11078191 AGGAATTAAG
* *
11078201 AAAATATTTTTTTATAATT
1 AAAATATATTTATATAATT
*
11078220 AAAATA-ATTTATATTATT
1 AAAATATATTTATATAATT
*
11078238 TAAATATATTT
1 AAAATATATTT
11078249 TAATCTTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AAAATATATTTATATAATT
Found at i:11079115 original size:122 final size:121
Alignment explanation
Indices: 11078869--11079105 Score: 325
Period size: 122 Copynumber: 2.0 Consensus size: 121
11078859 TTTATTCATT
* *
11078869 ATTTAATATATTTTTATTTTAATATTGTACATATTTCATTTATTATTATGATTAATTAGCTTCAA
1 ATTTAATATATTTTTATTTTAATATTGTACATATTTCATGTATTATTATGATTAATTAACTTCAA
** *
11078934 ACCATACAGTTCATTAATTATTGTATGTTATCTTTAAATAAACATCTATAATAATA
66 ACCATACAGTTCATTAATTATTACATGTTATCTTTAAACAAACATCTATAATAATA
* * *
11078990 ATTTAATCTATTTTTTATTTTAATATTGTACATATATT-ATGTGTTATTATGATTAATTAATTTC
1 ATTTAATATA-TTTTTATTTTAATATTGTACATAT-TTCATGTATTATTATGATTAATTAACTTC
* * * *
11079054 AAACCATA-TGTTTTATTAATTATTACATGTTATTTTTAAACATACATCTATA
64 AAACCATACAG-TTCATTAATTATTACATGTTATCTTTAAACAAACATCTATA
11079106 TTTTAAATTT
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
121 10 0.10
122 89 0.88
123 2 0.02
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (121 bp):
ATTTAATATATTTTTATTTTAATATTGTACATATTTCATGTATTATTATGATTAATTAACTTCAA
ACCATACAGTTCATTAATTATTACATGTTATCTTTAAACAAACATCTATAATAATA
Found at i:11092849 original size:487 final size:483
Alignment explanation
Indices: 11091940--11092899 Score: 1438
Period size: 487 Copynumber: 2.0 Consensus size: 483
11091930 TAGTGGATAG
* *
11091940 TTGGTGTATATTTTTATGTGCATAATGTGTAATAAGTTTAATTAAATTAACATAAAGTATAATTT
1 TTGGTGTATATTTTTATGTGCATAATGTGTAATAAGTTCAATTAAAATAACATAAAGTATAATTT
* *
11092005 ATAATAATATTAAACAAATAAAATGTAAAGAGAAGAAAAGATGGTAACCATATTTTCTTCTCCAA
66 ATAATAATATTAAACAAATAAAATGGAAAGAAAAGAAAAGATGGTAACCATATTTTCTTCTCCAA
* * * * * *
11092070 CCGAACCATCAAAAGAAAAAGGGGAGAAGCCATTGTTTTAATTTTAAGAGAGTTTGCCATTGCAT
131 CCGAACCACCAAAAAAAAAAAGAGAGAAGCCATTGTTTTAACTTCAAGAGAGTTTGCCATTGCAT
* * *
11092135 GGTAAAGATTTCAAAATACGTTTTTGTAAATTTTATGTTTTTTGAGATCCCGAGAGCTTGATATA
196 GGTAAAGATTTCAAAACACGTTTTCGTAAATTTTATGTTTTTTAAGATCCCGAGAGCTTGATATA
* * * * *
11092200 GCTAAATCGGGTACCAATTTGTACAACTGCTAAAGTTTTAAAAATTTTCCATAGTTGATTTCTTG
261 GCTAAATCGGATACCAATTTGTAAAAATGCTAAAGTTTTAAAAAGTTTCAATAGTTGATTTCTTG
11092265 AAGTTCTTGATGTTAAATTGTTAGATTTTAAGCTTAGAAATGAAAAATGACTAGTTTGTAAAGTT
326 AAGTTCTTGATGTTAAATTGTTAGATTTTAAGCTTAGAAATGAAAAATGACTAGTTTGTAAAGTT
*
11092330 TAATTGCTAGTTTTTTATACAGGGACTAAAGTGTGTAAATT-TCAAAATTGATGATGAATTTTTG
391 TAATTGCTAGTTTTTTATACAGGGACTAAAGTGTGTAAATTAT-AAAATTGATGATGAATTTTTA
*
11092394 TAATTATAGATGATAGAGGCTGTATATGA
455 TAATTATAGATCATAGAGGCTGTATATGA
*
11092423 TTGGTGTATATTTTTATGTTCATAATGTGTAATAAGTTCAATTAAAATAACATAAAGTATAATTT
1 TTGGTGTATATTTTTATGTGCATAATGTGTAATAAGTTCAATTAAAATAACATAAAGTATAATTT
* * * *
11092488 ATAATAATATTAAACAAATAAAAATGGAAATAAAAGAAAATATGGTCACCATATTTTCTTCTTCA
66 ATAATAATATTAAACAAAT-AAAATGGAAAGAAAAGAAAAGATGGTAACCATATTTTCTTCTCCA
*
11092553 ACCGAACCACCAAAATAAAAAAAGAGAGAAGCCATTTTTTTAACTTCAAGAGAGTTTGACCATTG
130 ACCGAACCACCAAAA-AAAAAAAGAGAGAAGCCATTGTTTTAACTTCAAGAGAGTTTG-CCATTG
*** * ** *
11092618 CATGGTAAAGATTTTGGAACCCGTTTTCGTAAATTTTATG-TTTTTAAGATCTTGTGAGCTTGAT
193 CATGGTAAAGATTTCAAAACACGTTTTCGTAAATTTTATGTTTTTTAAGATCCCGAGAGCTTGAT
* * * *
11092682 TTAGCTAACTCGGATACCAATTTGTAAAAATGTTAAAGTTTTAAAAAGTTTCAATGGTTGATTTT
258 ATAGCTAAATCGGATACCAATTTGTAAAAATGCTAAAGTTTTAAAAAGTTTCAATAGTTGA--TT
* ** * *
11092747 TTTTGTCGTTTTTGATGTTAAATTGTTAGGTTTTAAGCTTAGAAATGAAAAATGACTAGTTTGTA
321 TCTTGAAGTTCTTGATGTTAAATTGTTAGATTTTAAGCTTAGAAATGAAAAATGACTAGTTTGTA
* ** *
11092812 ATGTTTAATTGCTAGTTTTTTATTTAGGGACTAAAGTGTGTAAATTATGAAATTGATGATGAATT
386 AAGTTTAATTGCTAGTTTTTTATACAGGGACTAAAGTGTGTAAATTATAAAATTGATGATGAATT
11092877 TTTATAATTATAGATCATAGAGG
451 TTTATAATTATAGATCATAGAGG
11092900 GTTGTACAAG
Statistics
Matches: 425, Mismatches: 46, Indels: 8
0.89 0.10 0.02
Matches are distributed among these distances:
483 81 0.19
484 53 0.12
485 108 0.25
486 40 0.09
487 142 0.33
488 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (483 bp):
TTGGTGTATATTTTTATGTGCATAATGTGTAATAAGTTCAATTAAAATAACATAAAGTATAATTT
ATAATAATATTAAACAAATAAAATGGAAAGAAAAGAAAAGATGGTAACCATATTTTCTTCTCCAA
CCGAACCACCAAAAAAAAAAAGAGAGAAGCCATTGTTTTAACTTCAAGAGAGTTTGCCATTGCAT
GGTAAAGATTTCAAAACACGTTTTCGTAAATTTTATGTTTTTTAAGATCCCGAGAGCTTGATATA
GCTAAATCGGATACCAATTTGTAAAAATGCTAAAGTTTTAAAAAGTTTCAATAGTTGATTTCTTG
AAGTTCTTGATGTTAAATTGTTAGATTTTAAGCTTAGAAATGAAAAATGACTAGTTTGTAAAGTT
TAATTGCTAGTTTTTTATACAGGGACTAAAGTGTGTAAATTATAAAATTGATGATGAATTTTTAT
AATTATAGATCATAGAGGCTGTATATGA
Found at i:11093532 original size:20 final size:20
Alignment explanation
Indices: 11093507--11093556 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
11093497 CGCTTGTACA
11093507 TGTTTGCACTTTGATGCCTC
1 TGTTTGCACTTTGATGCCTC
* *
11093527 TGTTTGCACTTTGGTGCCTT
1 TGTTTGCACTTTGATGCCTC
*
11093547 TGTTTTCACT
1 TGTTTGCACT
11093557 ACGGTGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.08, C:0.22, G:0.20, T:0.50
Consensus pattern (20 bp):
TGTTTGCACTTTGATGCCTC
Found at i:11101839 original size:41 final size:41
Alignment explanation
Indices: 11101782--11101862 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
11101772 ATTCAATACA
* *
11101782 AAAATATATATTATATTTAT-TTATGTTTTTTTTAATATAAT
1 AAAATATATATTATATTTATGGTA-GTGTTTTTTAATATAAT
*
11101823 AAAATATTTATTATATTTATGGTAGTGTTTTTTAATATAA
1 AAAATATATATTATATTTATGGTAGTGTTTTTTAATATAA
11101863 ATTATTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 34 0.94
42 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (41 bp):
AAAATATATATTATATTTATGGTAGTGTTTTTTAATATAAT
Found at i:11115409 original size:30 final size:28
Alignment explanation
Indices: 11115370--11115447 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 28
11115360 AGAGACAGGA
*
11115370 GCGTATGTTTTAGCCGTGTATGACACACGG
1 GCGTGTGTTTT-GCCGTGTATGACACAC-G
11115400 GCGTGTGTTTTGCCTGTGTATGACACACG
1 GCGTGTGTTTTGCC-GTGTATGACACACG
* *
11115429 GCATGTGGTTTGGCCGTGT
1 GCGTGT-GTTTTGCCGTGT
11115448 GTCCCCTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 13 0.30
30 30 0.70
ACGTcount: A:0.14, C:0.19, G:0.33, T:0.33
Consensus pattern (28 bp):
GCGTGTGTTTTGCCGTGTATGACACACG
Found at i:11124764 original size:24 final size:24
Alignment explanation
Indices: 11124712--11124764 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
11124702 AACTCAAATG
* *
11124712 CATAAAAATTATATATATACCTAG
1 CATAAAAATTATATATATACCGAA
11124736 CATAAAAATTATACTATAT-CCGAA
1 CATAAAAATTATA-TATATACCGAA
*
11124760 TATAA
1 CATAA
11124765 GTAAGTAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (24 bp):
CATAAAAATTATATATATACCGAA
Found at i:11125471 original size:41 final size:40
Alignment explanation
Indices: 11125426--11125541 Score: 137
Period size: 40 Copynumber: 2.9 Consensus size: 40
11125416 TGATTTGGTA
* **
11125426 CACCGGCATGAAGCCTGCTAGACATAAAGTTTGAAATAATT
1 CACCGGCAT-AAGCCTGCTAGACACAAAGCCTGAAATAATT
* *
11125467 CACCGGCA-ATAGCCTGCTAGTCACAAAGCCTGAATTAATT
1 CACCGGCATA-AGCCTGCTAGACACAAAGCCTGAAATAATT
11125507 CACCGGCAATAAGCCTGCTA-AGCACAAAGCCTGAA
1 CACCGGC-ATAAGCCTGCTAGA-CACAAAGCCTGAA
11125542 TTTCACTGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
39 1 0.02
40 32 0.49
41 31 0.48
42 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (40 bp):
CACCGGCATAAGCCTGCTAGACACAAAGCCTGAAATAATT
Found at i:11125495 original size:81 final size:81
Alignment explanation
Indices: 11125374--11125526 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 81
11125364 GGTACGAGTA
* * **
11125374 TTGAAATGATACACCGGCACGAAGCCTGCTAGGCCTAAAGCCTGATTTGGTACACCGGC-ATGAA
1 TTGAAATAATACACCGGCAC-AAGCCTGCTAGGCCTAAAGCCTGAATTAATACACCGGCAAT-AA
11125438 GCCTGCTAGACATAAAGT
64 GCCTGCTAGACATAAAGT
* * *
11125456 TTGAAATAATTCACCGGCA-ATAGCCTGCTAGTCAC-AAAGCCTGAATTAATTCACCGGCAATAA
1 TTGAAATAATACACCGGCACA-AGCCTGCTAGGC-CTAAAGCCTGAATTAATACACCGGCAATAA
11125519 GCCTGCTA
64 GCCTGCTA
11125527 AGCACAAAGC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
80 1 0.02
81 40 0.66
82 20 0.33
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (81 bp):
TTGAAATAATACACCGGCACAAGCCTGCTAGGCCTAAAGCCTGAATTAATACACCGGCAATAAGC
CTGCTAGACATAAAGT
Found at i:11125542 original size:41 final size:41
Alignment explanation
Indices: 11125385--11125543 Score: 155
Period size: 41 Copynumber: 3.9 Consensus size: 41
11125375 TGAAATGATA
** * * ** *
11125385 CACCGGCACGAAGCCTGCTAGGC-CTAAAGCCTGATTTGGTA
1 CACCGGCAATAAGCCTGCTAGACAC-AAAGCCTGAATTAATT
* ** *
11125426 CACCGGC-ATGAAGCCTGCTAGACATAAAGTTTGAAATAATT
1 CACCGGCAAT-AAGCCTGCTAGACACAAAGCCTGAATTAATT
*
11125467 CACCGGCAAT-AGCCTGCTAGTCACAAAGCCTGAATTAATT
1 CACCGGCAATAAGCCTGCTAGACACAAAGCCTGAATTAATT
11125507 CACCGGCAATAAGCCTGCTA-AGCACAAAGCCTGAATT
1 CACCGGCAATAAGCCTGCTAGA-CACAAAGCCTGAATT
11125544 TCACTGATAC
Statistics
Matches: 96, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
40 35 0.36
41 59 0.61
42 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACACAAAGCCTGAATTAATT
Found at i:11129004 original size:169 final size:169
Alignment explanation
Indices: 11128721--11129059 Score: 633
Period size: 169 Copynumber: 2.0 Consensus size: 169
11128711 TGATGGCTCG
11128721 AGAGTGAGTATCTATATGAGATATGAGATAGAGGTGGTTTCAACCACGTATTGGCACTTAGTGTG
1 AGAGTGAGTATCTATATGAGATATGAGATAGAGGTGGTTTCAACCACGTATTGGCACTTAGTGTG
*
11128786 CGAGATACCCGAGTATCCGATAGTATTCCAAATGGTTCAACGAGCACAGTGATGATTTGAGGTTA
66 CGAGATACCCGAGTATCCGATAGTATTCCAAATGGTTCAACGAGCACAGTGATGATTTAAGGTTA
*
11128851 CATGAGTTCGATTCAAACTAGTACAGGTGTTTATGTGAA
131 CATGAGTTCGATTCAAACTAGTACAGGTATTTATGTGAA
*
11128890 AGAGTGAGTATCTATATGAGATATGAGATAGAGGTGGTTTCGACCACGTATTGGCACTTAGTGTG
1 AGAGTGAGTATCTATATGAGATATGAGATAGAGGTGGTTTCAACCACGTATTGGCACTTAGTGTG
*
11128955 CGAGATACCCGAGTATCCGATAGTATTCCAAATGGTTCAACGGGCACAGTGATGATTTAAGGTTA
66 CGAGATACCCGAGTATCCGATAGTATTCCAAATGGTTCAACGAGCACAGTGATGATTTAAGGTTA
*
11129020 CATGAGTTCGATTCGAACTAGTACAGGTATTTATGTGAA
131 CATGAGTTCGATTCAAACTAGTACAGGTATTTATGTGAA
11129059 A
1 A
11129060 TACGCGAAGT
Statistics
Matches: 165, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
169 165 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (169 bp):
AGAGTGAGTATCTATATGAGATATGAGATAGAGGTGGTTTCAACCACGTATTGGCACTTAGTGTG
CGAGATACCCGAGTATCCGATAGTATTCCAAATGGTTCAACGAGCACAGTGATGATTTAAGGTTA
CATGAGTTCGATTCAAACTAGTACAGGTATTTATGTGAA
Found at i:11130668 original size:46 final size:45
Alignment explanation
Indices: 11130590--11130707 Score: 184
Period size: 46 Copynumber: 2.6 Consensus size: 45
11130580 CTTACGTATG
* *
11130590 ATCACTTATCAC-TTGTCCCTGATCAGATAAGTGTAGTTAAGGCT
1 ATCACTTATCACTTTGTCACTGATCAGATAAGTGTAGCTAAGGCT
11130634 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ATCACTTATCACTTTGTCAC-TGATCAGATAAGTGTAGCTAAGGCT
* *
11130680 ACCACTTATCACTTTGCCACTGATCAGA
1 ATCACTTATCACTTTGTCACTGATCAGA
11130708 AGTACTCAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
44 12 0.18
45 14 0.21
46 42 0.62
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (45 bp):
ATCACTTATCACTTTGTCACTGATCAGATAAGTGTAGCTAAGGCT
Found at i:11138660 original size:5 final size:5
Alignment explanation
Indices: 11138650--11138678 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
11138640 TATCATAATA
11138650 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
11138679 AACATTATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:11140925 original size:21 final size:21
Alignment explanation
Indices: 11140899--11140959 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
11140889 TTTGGGTGGA
11140899 TCAGCTCTCACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
*
11140920 TCAGCTCTAACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
*
11140941 TCAGCTTTCACGAGCTTCT
1 TCAGCTCTCACGAGCTTCT
11140960 ATTGACGTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.34
Consensus pattern (21 bp):
TCAGCTCTCACGAGCTTCTGT
Found at i:11142474 original size:251 final size:251
Alignment explanation
Indices: 11142031--11142542 Score: 929
Period size: 251 Copynumber: 2.0 Consensus size: 251
11142021 AATGTTGGCT
*
11142031 TATATGTATTTGTTGAGTTTAGCCACTCATTTGGCTTATGTTTTGGTATTTTATTATGTGCATAA
1 TATATGTATTTGTTGAGTTTAGCCACTCATTTGGCATATGTTTTGGTATTTTATTATGTGCATAA
11142096 TTTACTTTAAAATGTTGATGTGTGGAATGATTTGTGGTTGAATGATGAAAGGTAAAATAGTAGTT
66 TTTACTTTAAAATGTTGATGTGTGGAATGATTTGTGGTTGAATGATGAAAGGTAAAATAGTAGTT
11142161 GAAAATGCATATGAGGTACGTTTTCTAACTTGGTCTGATTTGGTACTATGCTATAGTAAGTGTAT
131 GAAAATGCATATGAGGTACGTTTTCTAACTTGGTCTGATTTGGTACTATGCTATAGTAAGTGTAT
11142226 ATGTATTTGATGCTATTGAATAAGTAGTACAATTGGTACCAAATGGTAAGTTTTAG
196 ATGTATTTGATGCTATTGAATAAGTAGTACAATTGGTACCAAATGGTAAGTTTTAG
11142282 TATATGTATTTGTTGAGTTTAGCCACTCATTTGGCATATGTTTTGGTATTTTGA-TATGTGCATA
1 TATATGTATTTGTTGAGTTTAGCCACTCATTTGGCATATGTTTTGGTATTTT-ATTATGTGCATA
* *
11142346 ATTTGCTTTAAAATGTTGATGTGTGGAATGATTTGTGGTTTAATGATGAAAGGTAAAATAGTAGT
65 ATTTACTTTAAAATGTTGATGTGTGGAATGATTTGTGGTTGAATGATGAAAGGTAAAATAGTAGT
* *
11142411 TGAAAATGCATATGAGGTACGTTTTCTAACTTGGTGTGATTTGTTACTATGCTATAGTAAGTGTA
130 TGAAAATGCATATGAGGTACGTTTTCTAACTTGGTCTGATTTGGTACTATGCTATAGTAAGTGTA
**
11142476 TATGTATTTGATGCTATTGAATAAGTAGTATGATTGGTACCAAATGGTAAGTTTTAG
195 TATGTATTTGATGCTATTGAATAAGTAGTACAATTGGTACCAAATGGTAAGTTTTAG
*
11142533 TAAATG-ATTT
1 TATATGTATTT
11142543 ACATGTCGTG
Statistics
Matches: 252, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
250 4 0.02
251 247 0.98
252 1 0.00
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (251 bp):
TATATGTATTTGTTGAGTTTAGCCACTCATTTGGCATATGTTTTGGTATTTTATTATGTGCATAA
TTTACTTTAAAATGTTGATGTGTGGAATGATTTGTGGTTGAATGATGAAAGGTAAAATAGTAGTT
GAAAATGCATATGAGGTACGTTTTCTAACTTGGTCTGATTTGGTACTATGCTATAGTAAGTGTAT
ATGTATTTGATGCTATTGAATAAGTAGTACAATTGGTACCAAATGGTAAGTTTTAG
Found at i:11144549 original size:20 final size:20
Alignment explanation
Indices: 11144524--11144563 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
11144514 AATATTTTCT
*
11144524 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
11144544 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
11144564 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:11144566 original size:34 final size:35
Alignment explanation
Indices: 11144512--11144578 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
11144502 CAAACAGCAG
* *
11144512 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
11144547 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
11144579 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:11144726 original size:30 final size:31
Alignment explanation
Indices: 11144692--11144753 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
11144682 AGAAATTTAG
* *
11144692 TGATTAAATCGAAAAA-ATT-TTATAATTAAA
1 TGATTAAAAC-AAAAACATTCTCATAATTAAA
11144722 TGATTAAAACAAAAACATTCTCATAATTAAA
1 TGATTAAAACAAAAACATTCTCATAATTAAA
11144753 T
1 T
11144754 ATCATTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.18
30 12 0.43
31 11 0.39
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (31 bp):
TGATTAAAACAAAAACATTCTCATAATTAAA
Found at i:11155129 original size:46 final size:46
Alignment explanation
Indices: 11155059--11155217 Score: 167
Period size: 46 Copynumber: 3.5 Consensus size: 46
11155049 CAGGGCTTAA
* * *
11155059 TATTTTTGTATTCTCAAGTTCGCAATAG-ATGCAGGAACTTGGAACC
1 TATTCTTGTATTCTCAAGTCCGCAAT-GTATGCAGGAGCTTGGAACC
* * ***
11155105 TATTTTTGTATTCTCAAGTCCGCAATGTATGTAGGAGCTCAAAACC
1 TATTCTTGTATTCTCAAGTCCGCAATGTATGCAGGAGCTTGGAACC
* * * * * *
11155151 TAATCCTATATTCTCGAGTACGCAACGTATGCAGGAGCTTGGAACC
1 TATTCTTGTATTCTCAAGTCCGCAATGTATGCAGGAGCTTGGAACC
*
11155197 TATTCTTGTATTCTCGAGTCC
1 TATTCTTGTATTCTCAAGTCC
11155218 ACAACATATG
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 1 0.01
46 90 0.99
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (46 bp):
TATTCTTGTATTCTCAAGTCCGCAATGTATGCAGGAGCTTGGAACC
Found at i:11155243 original size:46 final size:46
Alignment explanation
Indices: 11155101--11155244 Score: 146
Period size: 46 Copynumber: 3.1 Consensus size: 46
11155091 AGGAACTTGG
* * * * * *
11155101 AACCTATTTTTGTATTCTCAAGTCCGCAATGTATGTAGGAGCTCAA
1 AACCTATTCTTGTATTCTCGAGTCCGCAACGTATGCAGGAGTTCGA
* * * * *
11155147 AACCTAATCCTATATTCTCGAGTACGCAACGTATGCAGGAGCTT-GG
1 AACCTATTCTTGTATTCTCGAGTCCGCAACGTATGCAGGAG-TTCGA
* * *
11155193 AACCTATTCTTGTATTCTCGAGTCCACAACATATGCAGTAGTTCGA
1 AACCTATTCTTGTATTCTCGAGTCCGCAACGTATGCAGGAGTTCGA
11155239 AACCTA
1 AACCTA
11155245 GTCAAACTCA
Statistics
Matches: 77, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
45 2 0.03
46 74 0.96
47 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (46 bp):
AACCTATTCTTGTATTCTCGAGTCCGCAACGTATGCAGGAGTTCGA
Found at i:11156591 original size:15 final size:15
Alignment explanation
Indices: 11156553--11156592 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
11156543 TCCACCACTT
*
11156553 GATGAAGAAGACGAG
1 GATGAAGATGACGAG
11156568 GATGAAGATGACGAG
1 GATGAAGATGACGAG
11156583 GATGAAGATG
1 GATGAAGATG
11156593 TTGGGTTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.42, C:0.05, G:0.40, T:0.12
Consensus pattern (15 bp):
GATGAAGATGACGAG
Found at i:11157016 original size:20 final size:19
Alignment explanation
Indices: 11156964--11157016 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
11156954 ACAATATTGA
11156964 TTTACCAATATTTATAAGAC
1 TTTA-CAATATTTATAAGAC
* *
11156984 TTTACTAAAATTTATAAGAT
1 TTTAC-AATATTTATAAGAC
11157004 TTTATCAATATTT
1 TTTA-CAATATTT
11157017 CCAAATTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (19 bp):
TTTACAATATTTATAAGAC
Found at i:11157386 original size:40 final size:40
Alignment explanation
Indices: 11157299--11157387 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
11157289 TCCAATGACT
* * ** *
11157299 TACCAAAATATCTAACAATTTATCGAAATTTATATTGTTT
1 TACCAATATATCTAACAACTTATCGAAATTTATATCATTA
*
11157339 TACCAATATATCTAACAACTTATC-AATATTTCTATCATTA
1 TACCAATATATCTAACAACTTATCGAA-ATTTATATCATTA
*
11157379 TATCAATAT
1 TACCAATAT
11157388 TTATGAGGCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.42
Consensus pattern (40 bp):
TACCAATATATCTAACAACTTATCGAAATTTATATCATTA
Found at i:11157504 original size:20 final size:20
Alignment explanation
Indices: 11157481--11157556 Score: 91
Period size: 20 Copynumber: 3.9 Consensus size: 20
11157471 TTTTTTTAAA
*
11157481 GATTTACCAATATTTCTAAG
1 GATTTACCAAAATTTCTAAG
* * *
11157501 GA-TTCCCAAAATATCTAAC
1 GATTTACCAAAATTTCTAAG
*
11157520 GATTTACCAAAATTTTTAAG
1 GATTTACCAAAATTTCTAAG
*
11157540 GATTTATCAAAATTTCT
1 GATTTACCAAAATTTCT
11157557 GTCATTTTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
19 15 0.33
20 30 0.67
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (20 bp):
GATTTACCAAAATTTCTAAG
Found at i:11157517 original size:19 final size:19
Alignment explanation
Indices: 11157484--11157543 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
11157474 TTTTAAAGAT
* *
11157484 TTACCAATATTTCTAAGGA
1 TTACCAAAATATCTAAGGA
* *
11157503 TTCCCAAAATATCTAACGA
1 TTACCAAAATATCTAAGGA
* *
11157522 TTTACCAAAATTTTTAAGGA
1 -TTACCAAAATATCTAAGGA
11157542 TT
1 TT
11157544 TATCAAAATT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (19 bp):
TTACCAAAATATCTAAGGA
Found at i:11157585 original size:20 final size:19
Alignment explanation
Indices: 11157562--11157614 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
11157552 TTTCTGTCAT
*
11157562 TTTACCAATATTTATGAGAC
1 TTTACCAATATTTA-AAGAC
* *
11157582 TTTACCGAAAATTTAAAGAT
1 TTTACC-AATATTTAAAGAC
*
11157602 TTTATCAATATTT
1 TTTACCAATATTT
11157615 TCAAATTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 6 0.22
20 14 0.52
21 7 0.26
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (19 bp):
TTTACCAATATTTAAAGAC
Found at i:11157675 original size:20 final size:19
Alignment explanation
Indices: 11157650--11157724 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 19
11157640 GTATTAACAA
11157650 TTACCAAAATTTCTATAACT
1 TTACCAAAATTTCTA-AACT
* *
11157670 TTACCATAATATCTAAGGA-T
1 TTACCAAAATTTCTAA--ACT
* *
11157690 TTACCAATATTTCTAAGCAT
1 TTACCAAAATTTCTAAAC-T
*
11157710 TTACCAAAAATTCTA
1 TTACCAAAATTTCTA
11157725 TCTTTTTACC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.37
Consensus pattern (19 bp):
TTACCAAAATTTCTAAACT
Found at i:11157733 original size:60 final size:60
Alignment explanation
Indices: 11157650--11157762 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 60
11157640 GTATTAACAA
*
11157650 TTACCAAAATTTCTATAACTTTACCATAATATCTAAG-GA-TTTACCAATATTTCTAAGCAT
1 TTACCAAAAATTCTATAACTTTACC--AATATCTAAGAGACTTTACCAATATTTCTAAGCAT
*** * *
11157710 TTACCAAAAATTCTATCTTTTTACCAATATTTATGAGACTTTACCAATATTTC
1 TTACCAAAAATTCTATAACTTTACCAATATCTAAGAGACTTTACCAATATTTC
11157763 CAATTTTTCT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 8 0.18
59 2 0.04
60 35 0.78
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.41
Consensus pattern (60 bp):
TTACCAAAAATTCTATAACTTTACCAATATCTAAGAGACTTTACCAATATTTCTAAGCAT
Found at i:11157846 original size:40 final size:39
Alignment explanation
Indices: 11157797--11158128 Score: 231
Period size: 40 Copynumber: 8.3 Consensus size: 39
11157787 GTCATAATAA
* * * *
11157797 TTACTAAAATTTCTATGACTTTACCAAAATGTCTAATAAT
1 TTACCAAAATTTCTAGGA-TTTACCAAAATATCTAACAAT
*
11157837 TTACCAAAATTTCTAAGGATTTACCAATATATCTAACAAT
1 TTACCAAAATTTCT-AGGATTTACCAAAATATCTAACAAT
*
11157877 TTACCAATAATTT-TAAGGATTTACCAAAATATCTAACAGT
1 TTACCAA-AATTTCT-AGGATTTACCAAAATATCTAACAAT
* * * * * * ***
11157917 TTTCTAAAATTTCTATCGATTTACCAATACT-TGTGAGGTT
1 TTACCAAAATTTCTA-GGATTTACCAA-AATATCTAACAAT
* * * * *
11157957 TTACCAATATTTCTAAGGATTTACCAATATATCCAATAGT
1 TTACCAAAATTTCT-AGGATTTACCAAAATATCTAACAAT
* * * * *
11157997 TTACCAAAATTTCTAAGAATTTATCGATATATCTAACAAA
1 TTACCAAAATTTCT-AGGATTTACCAAAATATCTAACAAT
* * *
11158037 TTACCAAAAAATT-TA-AAGTGTTACCAAAACATCTAACAAT
1 TTACC-AAAATTTCTAGGA-T-TTACCAAAATATCTAACAAT
* * * * *
11158077 TTACCAAAATTTTCAATGTTTTATCAAAATATCTAACGAT
1 TTACCAAAA-TTTCTAGGATTTACCAAAATATCTAACAAT
11158117 TTACCAAAATTT
1 TTACCAAAATTT
11158129 TTATTGAATT
Statistics
Matches: 230, Mismatches: 49, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
38 2 0.01
39 16 0.07
40 193 0.84
41 19 0.08
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (39 bp):
TTACCAAAATTTCTAGGATTTACCAAAATATCTAACAAT
Found at i:11157880 original size:147 final size:147
Alignment explanation
Indices: 11157602--11157885 Score: 376
Period size: 147 Copynumber: 1.9 Consensus size: 147
11157592 ATTTAAAGAT
* *
11157602 TTTATCAATATTTTCAAATTTTCTAAACCTTATACCAAGTATTAACAATTACCAAAATTTCTATA
1 TTTACCAATATTTCCAAATTTTCTAAACCTTATACCAAGTATTAACAATTACCAAAATTTCTATA
* * * * **
11157667 ACTTTACCATAATATCTAAGGATTTACCAATATTTCTAAGCATTTACCAAAAATTCTATCTTTTT
66 ACTTTACCAAAATATCTAAGAATTTACCAAAATTTCTAAGCATTTACCAAAAATTCTAACAATTT
11157732 ACCAATATTTATGAGAC
131 ACCAATATTTATGAGAC
* * *
11157749 TTTACCAATATTTCCAATTTTTCTAAACAC-TATACCAAGTCA-TAATAATTACTAAAATTTCTA
1 TTTACCAATATTTCCAAATTTTCTAAAC-CTTATACCAAGT-ATTAACAATTACCAAAATTTCTA
* * * * *
11157812 TGACTTTACCAAAATGTCTAATAATTTACCAAAATTTCTAAGGATTTACC-AATATATCTAACAA
64 TAACTTTACCAAAATATCTAAGAATTTACCAAAATTTCTAAGCATTTACCAAAAAT-TCTAACAA
11157876 TTTACCAATA
128 TTTACCAATA
11157886 ATTTTAAGGA
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
146 4 0.03
147 112 0.95
148 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.39
Consensus pattern (147 bp):
TTTACCAATATTTCCAAATTTTCTAAACCTTATACCAAGTATTAACAATTACCAAAATTTCTATA
ACTTTACCAAAATATCTAAGAATTTACCAAAATTTCTAAGCATTTACCAAAAATTCTAACAATTT
ACCAATATTTATGAGAC
Found at i:11157900 original size:147 final size:146
Alignment explanation
Indices: 11157582--11157903 Score: 373
Period size: 147 Copynumber: 2.2 Consensus size: 146
11157572 TTTATGAGAC
* * * * *
11157582 TTTACCGAAAATTTAAAGATTTTATCAATATTTTCAAATTTTCTAAACCTTATACCAAGTATTAA
1 TTTACC-AATATTTAAGGACTTTACCAATATTTCCAAATTTTCTAAACCTTATACCAAGTATTAA
* * *
11157647 CAATTACCAAAATTTCTATAACTTTACCATAATATCTAAGGATTTACCAATATTTCTAAGCATTT
65 CAATTACCAAAATTTCTATAACTTTACCAAAATATCTAAGAATTTACCAAAATTTCTAAGCATTT
* **
11157712 ACCAAAAATTCTATCTT
130 ACCAAAAATTCTAACAA
* *
11157729 TTTACCAATATTTATGAGACTTTACCAATATTTCCAATTTTTCTAAACAC-TATACCAAGTCA-T
1 TTTACCAATATTTAAG-GACTTTACCAATATTTCCAAATTTTCTAAAC-CTTATACCAAGT-ATT
* * * * * *
11157792 AATAATTACTAAAATTTCTATGACTTTACCAAAATGTCTAATAATTTACCAAAATTTCTAAGGAT
63 AACAATTACCAAAATTTCTATAACTTTACCAAAATATCTAAGAATTTACCAAAATTTCTAAGCAT
*
11157857 TTACC-AATATATCTAACAA
128 TTACCAAAAAT-TCTAACAA
11157876 TTTACCAATAATTTTAAGGA-TTTACCAA
1 TTTACCAAT-A-TTTAAGGACTTTACCAA
11157904 AATATCTAAC
Statistics
Matches: 148, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
146 11 0.07
147 127 0.86
148 5 0.03
149 5 0.03
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.39
Consensus pattern (146 bp):
TTTACCAATATTTAAGGACTTTACCAATATTTCCAAATTTTCTAAACCTTATACCAAGTATTAAC
AATTACCAAAATTTCTATAACTTTACCAAAATATCTAAGAATTTACCAAAATTTCTAAGCATTTA
CCAAAAATTCTAACAA
Found at i:11157901 original size:80 final size:80
Alignment explanation
Indices: 11157816--11158428 Score: 337
Period size: 80 Copynumber: 7.6 Consensus size: 80
11157806 TTTCTATGAC
* *
11157816 TTTACCAAAATGTCTAATAATTTACCAAAATTTCTAAGGATTTACCAATATATCTAACAATTTAC
1 TTTACCAAAATATCTAATAATTTACCAAAATTTCTAAGGATTTACCAATATATCTAACGATTTAC
11157881 CAATAATTTTAAGGA
66 CAATAATTTTAAGGA
* * * * ** * * * *
11157896 TTTACCAAAATATCTAACAGTTTTCTAAAATTTCTATCGATTTACCAATACT-TGTGAGGTTTTA
1 TTTACCAAAATATCTAATAATTTACCAAAATTTCTAAGGATTTACCAATA-TATCTAACGATTTA
11157960 CCAAT-ATTTCTAAGGA
65 CCAATAATTT-TAAGGA
* * * * * * * *
11157976 TTTACCAATATATCCAATAGTTTACCAAAATTTCTAAGAATTTATCGATATATCTAACAAATTAC
1 TTTACCAAAATATCTAATAATTTACCAAAATTTCTAAGGATTTACCAATATATCTAACGATTTAC
* * *
11158041 CAAAAAATTTAAAG-
66 CAATAATTTTAAGGA
* * * * * *
11158055 TGTTACCAAAACATCTAACAATTTACCAAAATTT-TCAATGTTTTATCAAAATATCTAACGATTT
1 T-TTACCAAAATATCTAATAATTTACCAAAATTTCT-AAGGATTTACCAATATATCTAACGATTT
**
11158119 ACCAA-AATTTTTATTGA
64 ACCAATAA-TTTTAAGGA
* * * * * * * * * * * * ***
11158136 ATTACCAATATTTATGAGACTTTACCAATATTTTCTAA-AATTTTACCGATATTTTTAAATTTTC
1 TTTACCAAAATATCTAATAATTTACCAA-AATTTCTAAGGA-TTTACCAATATATCTAACGATT-
* *
11158200 TAAACCTTATACCAAGTTTTAA-CA
63 T--ACC--A-A-TAA-TTTTAAGGA
* * * * * * * * * *
11158224 ATTACCGAAATTTCT-ATGACTTTACCAAAATATCTAAGGATATACTAGTATATCTAACGTTTTC
1 TTTACCAAAATATCTAAT-AATTTACCAAAATTTCTAAGGATTTACCAATATATCTAACGATTTA
11158288 CCAAT-ATTTCTAAGGA
65 CCAATAATTT-TAAGGA
* * * * * * * * *
11158304 TTTACCAAAATGTCTAATGATTTACTAAATTTTTTAAGGATTTACCAAAATATTTGATGATTTAC
1 TTTACCAAAATATCTAATAATTTACCAAAATTTCTAAGGATTTACCAATATATCTAACGATTTAC
* *
11158369 TAATATTTTTAAGGA
66 CAATAATTTTAAGGA
* * * *
11158384 ATTACCAACATATTTAACAATTTACCAAAATTTCTATA-GATTTAC
1 TTTACCAAAATATCTAATAATTTACCAAAATTTCTA-AGGATTTAC
11158429 GAAAATTTAT
Statistics
Matches: 392, Mismatches: 115, Indels: 52
0.70 0.21 0.09
Matches are distributed among these distances:
78 3 0.01
79 13 0.03
80 281 0.72
81 31 0.08
82 3 0.01
84 5 0.01
86 2 0.01
87 23 0.06
88 24 0.06
89 7 0.02
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (80 bp):
TTTACCAAAATATCTAATAATTTACCAAAATTTCTAAGGATTTACCAATATATCTAACGATTTAC
CAATAATTTTAAGGA
Found at i:11158019 original size:20 final size:20
Alignment explanation
Indices: 11157797--11158457 Score: 183
Period size: 20 Copynumber: 32.6 Consensus size: 20
11157787 GTCATAATAA
* * *
11157797 TTACTAAAATTTCTATGACT
1 TTACCAAAATTTCTAAGAAT
* *
11157817 TTACCAAAATGTCTAATAAT
1 TTACCAAAATTTCTAAGAAT
*
11157837 TTACCAAAATTTCTAAGGAT
1 TTACCAAAATTTCTAAGAAT
* * *
11157857 TTACCAATATATCTAACAAT
1 TTACCAAAATTTCTAAGAAT
*
11157877 TTACCAATAATTT-TAAGGAT
1 TTACCAA-AATTTCTAAGAAT
* * *
11157897 TTACCAAAATATCTAACAGT
1 TTACCAAAATTTCTAAGAAT
* * *
11157917 TTTCTAAAATTTCTATCG-AT
1 TTACCAAAATTTCTA-AGAAT
* * * * **
11157937 TTACCAATACTTGTGAGGTT
1 TTACCAAAATTTCTAAGAAT
* *
11157957 TTACCAATATTTCTAAGGAT
1 TTACCAAAATTTCTAAGAAT
* * * * *
11157977 TTACCAATATATCCAATAGT
1 TTACCAAAATTTCTAAGAAT
11157997 TTACCAAAATTTCTAAGAAT
1 TTACCAAAATTTCTAAGAAT
* * * * * *
11158017 TTATCGATATATCTAACAAA
1 TTACCAAAATTTCTAAGAAT
* *
11158037 TTACCAAAAAATT-TAA-AGT
1 TTACC-AAAATTTCTAAGAAT
** *
11158056 GTTACCAAAACATCTAACAAT
1 -TTACCAAAATTTCTAAGAAT
*
11158077 TTACCAAAATTT-TCAATG-TT
1 TTACCAAAATTTCT-AA-GAAT
* *
11158097 TTATCAAAATATCTAACG-AT
1 TTACCAAAATTTCTAA-GAAT
* *
11158117 TTACCAAAATTTTTATTGAA-
1 TTACCAAAATTTCTA-AGAAT
* * * *
11158137 TTACCAATATTTATGAGACT
1 TTACCAAAATTTCTAAGAAT
*
11158157 TTACCAATATTTTCTAA-AATT
1 TTACCAA-AATTTCTAAGAA-T
*
11158178 TTACCGATATTTTTAAATTTTCTAA-ACCT
1 TTACC---A-----AAA-TTTCTAAGA-AT
* *
11158207 TATACC-AAGTTT-TAACAA-
1 T-TACCAAAATTTCTAAGAAT
* * *
11158225 TTACCGAAATTTCTATGACT
1 TTACCAAAATTTCTAAGAAT
* *
11158245 TTACCAAAATATCTAAGGAT
1 TTACCAAAATTTCTAAGAAT
* * ** * *
11158265 ATACTAGTATATCTAACG-TT
1 TTACCAAAATTTCTAA-GAAT
* * *
11158285 TTCCCAATATTTCTAAGGAT
1 TTACCAAAATTTCTAAGAAT
*
11158305 TTACCAAAATGTCTAATG-AT
1 TTACCAAAATTTCTAA-GAAT
* * * *
11158325 TTACTAAATTTTTTAAGGAT
1 TTACCAAAATTTCTAAGAAT
*
11158345 TTACCAAAATATT-TGATG-AT
1 TTACCAAAAT-TTCT-AAGAAT
* * *
11158365 TTACTAATATTTTTAAGGAA-
1 TTACCAAAATTTCTAA-GAAT
* *
11158385 TTACCAACATATT-TAACAAT
1 TTACCAAAAT-TTCTAAGAAT
11158405 TTACCAAAATTTCTATAG-AT
1 TTACCAAAATTTCTA-AGAAT
* * * *
11158425 TTACGAAAATTTATGAGATT
1 TTACCAAAATTTCTAAGAAT
*
11158445 TTACCAATATTTC
1 TTACCAAAATTTC
11158458 CAAAATTTCT
Statistics
Matches: 461, Mismatches: 135, Indels: 90
0.67 0.20 0.13
Matches are distributed among these distances:
17 4 0.01
18 6 0.01
19 31 0.07
20 370 0.80
21 33 0.07
24 1 0.00
28 1 0.00
29 11 0.02
30 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (20 bp):
TTACCAAAATTTCTAAGAAT
Found at i:11158182 original size:21 final size:19
Alignment explanation
Indices: 11158137--11158198 Score: 61
Period size: 21 Copynumber: 3.1 Consensus size: 19
11158127 TTTTATTGAA
* * *
11158137 TTACCAATATTTATGAGACT
1 TTACCAATATTT-TTAAATT
11158157 TTACCAATATTTTCTAAAATT
1 TTACCAATATTTT-T-AAATT
*
11158178 TTACCGATATTTTTAAATT
1 TTACCAATATTTTTAAATT
11158197 TT
1 TT
11158199 CTAAACCTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 8 0.22
20 13 0.36
21 15 0.42
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.48
Consensus pattern (19 bp):
TTACCAATATTTTTAAATT
Found at i:11160881 original size:27 final size:27
Alignment explanation
Indices: 11160817--11160882 Score: 64
Period size: 29 Copynumber: 2.4 Consensus size: 27
11160807 AAAATTTTTT
*
11160817 TAATTAATATAACACAAAATAAATTAG
1 TAATTAATATAACACAAAATAAATTAA
*
11160844 T-ATATAAAATAAACACAACGAAT-AATTAA
1 TAAT-TAATAT-AACACAA--AATAAATTAA
11160873 TAATTAATAT
1 TAATTAATAT
11160883 GAAAGATGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
26 2 0.06
27 6 0.19
28 7 0.23
29 11 0.35
30 5 0.16
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (27 bp):
TAATTAATATAACACAAAATAAATTAA
Found at i:11162287 original size:21 final size:21
Alignment explanation
Indices: 11162263--11162312 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
11162253 GTTCAACATT
11162263 GCGACTTCAAAGGATGGTGTC
1 GCGACTTCAAAGGATGGTGTC
* * *
11162284 GCGACATCCAATGGGTGGTGTC
1 GCGAC-TTCAAAGGATGGTGTC
*
11162306 GTGACTT
1 GCGACTT
11162313 TGAAGGCAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (21 bp):
GCGACTTCAAAGGATGGTGTC
Found at i:11165758 original size:2 final size:2
Alignment explanation
Indices: 11165751--11165783 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
11165741 TAACCTTTCC
11165751 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11165784 TAATTAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11166864 original size:26 final size:26
Alignment explanation
Indices: 11166828--11166888 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
11166818 AACACAAGAA
* * *
11166828 GAGAAAATATTTTCTTTATTTTTAGT
1 GAGAAAATATTTTATTTACTTTTAAT
11166854 GAGAAAATATTTTATTTACTTTTAAT
1 GAGAAAATATTTTATTTACTTTTAAT
*
11166880 GGGAAAATA
1 GAGAAAATA
11166889 ACACTTTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (26 bp):
GAGAAAATATTTTATTTACTTTTAAT
Found at i:11169528 original size:21 final size:21
Alignment explanation
Indices: 11169504--11169601 Score: 79
Period size: 21 Copynumber: 4.7 Consensus size: 21
11169494 TCAGCTTTAT
*
11169504 TGAGCTTCTGTTTAACCCTTA
1 TGAGCTTCTGTTCAACCCTTA
* * * *
11169525 TGAGTTTCTGTTCAGCTCTTG
1 TGAGCTTCTGTTCAACCCTTA
*
11169546 CGAGCTTCTGTTCAACCCTTA
1 TGAGCTTCTGTTCAACCCTTA
* * * * * * *
11169567 TGGGTTTTTGTTTAGCTCTAA
1 TGAGCTTCTGTTCAACCCTTA
11169588 TGAGCTTCTGTTCA
1 TGAGCTTCTGTTCA
11169602 GATTTTGAGC
Statistics
Matches: 55, Mismatches: 22, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.44
Consensus pattern (21 bp):
TGAGCTTCTGTTCAACCCTTA
Found at i:11169600 original size:42 final size:42
Alignment explanation
Indices: 11169449--11169601 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 42
11169439 GTTTACTTTT
* * * * * *
11169449 TGTTTAGCTCTCACGAGCATCTGTTTAACTCATATGAGTTTC
1 TGTTCAGCTCTAACGAGCTTCTGTTCAACCCTTATGAGTTTC
* * ** *
11169491 CGTTCAGCTTTATTGAGCTTCTGTTTAACCCTTATGAGTTTC
1 TGTTCAGCTCTAACGAGCTTCTGTTCAACCCTTATGAGTTTC
** * *
11169533 TGTTCAGCTCTTGCGAGCTTCTGTTCAACCCTTATGGGTTTT
1 TGTTCAGCTCTAACGAGCTTCTGTTCAACCCTTATGAGTTTC
* *
11169575 TGTTTAGCTCTAATGAGCTTCTGTTCA
1 TGTTCAGCTCTAACGAGCTTCTGTTCA
11169602 GATTTTGAGC
Statistics
Matches: 90, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 90 1.00
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (42 bp):
TGTTCAGCTCTAACGAGCTTCTGTTCAACCCTTATGAGTTTC
Found at i:11175329 original size:27 final size:27
Alignment explanation
Indices: 11175247--11175343 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 27
11175237 ATCTAATCAA
* * * *
11175247 AGTATGCCATAAAGGTGATCCATATAG
1 AGTACGCCACAAAGGCGATTCATATAG
* * ** *
11175274 GGTATGCCACAAAGGCGATTCCCACAG
1 AGTACGCCACAAAGGCGATTCATATAG
*
11175301 AGTACGCCACAAAGGCGATTCATTTAG
1 AGTACGCCACAAAGGCGATTCATATAG
*
11175328 AGTACGCCGCAAAGGC
1 AGTACGCCACAAAGGC
11175344 TGACATGATG
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.19
Consensus pattern (27 bp):
AGTACGCCACAAAGGCGATTCATATAG
Found at i:11176582 original size:45 final size:45
Alignment explanation
Indices: 11176524--11176610 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
11176514 TCTTTTTTAC
* * * *
11176524 CATGATGCCATAGCGTTTTTCAGCCATGGTCTTACTCATTTTCGT
1 CATGATGCCATAGCATCTTTCAACCATGATCTTACTCATTTTCGT
** * *
11176569 CATGATGTTATAGCATCTTTCAACTATGATCTTACTTATTTT
1 CATGATGCCATAGCATCTTTCAACCATGATCTTACTCATTTT
11176611 TACGCCTATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.44
Consensus pattern (45 bp):
CATGATGCCATAGCATCTTTCAACCATGATCTTACTCATTTTCGT
Found at i:11183490 original size:24 final size:24
Alignment explanation
Indices: 11183463--11183511 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
11183453 GACGAAAACA
*
11183463 AAGTCGA-ATGTGGGGATGAAGATG
1 AAGTCGAGA-GTGGAGATGAAGATG
11183487 AAGTCGAGAGTGGAGATGAAGATG
1 AAGTCGAGAGTGGAGATGAAGATG
11183511 A
1 A
11183512 CTATGAGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.41, T:0.18
Consensus pattern (24 bp):
AAGTCGAGAGTGGAGATGAAGATG
Found at i:11183688 original size:18 final size:18
Alignment explanation
Indices: 11183665--11183721 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
11183655 TATTTTGTTT
11183665 TATTATAATATAATATAA
1 TATTATAATATAATATAA
*
11183683 TATTATAATATAACAT-A
1 TATTATAATATAATATAA
*
11183700 T-TT-TATTATAATATATA
1 TATTATAATATAATATA-A
11183717 TATTA
1 TATTA
11183722 AATTTATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 9 0.28
16 2 0.06
17 4 0.12
18 17 0.53
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTATAATATAATATAA
Found at i:11183706 original size:20 final size:19
Alignment explanation
Indices: 11183662--11183720 Score: 75
Period size: 20 Copynumber: 3.1 Consensus size: 19
11183652 ATTTATTTTG
11183662 TTTTATTATAATAT-AATA
1 TTTTATTATAATATAAATA
**
11183680 TAATATTATAATATAACATA
1 TTTTATTATAATATAA-ATA
*
11183700 TTTTATTATAATATATATA
1 TTTTATTATAATATAAATA
11183719 TT
1 TT
11183721 AAATTTATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
18 12 0.35
19 6 0.18
20 16 0.47
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTATTATAATATAAATA
Found at i:11183728 original size:20 final size:19
Alignment explanation
Indices: 11183667--11183734 Score: 54
Period size: 20 Copynumber: 3.6 Consensus size: 19
11183657 TTTTGTTTTA
11183667 TTATAATATA-ATA-TAAT
1 TTATAATATATATATTAAT
* *
11183684 ATTATAATATAACATATT-TT
1 -TTATAATAT-ATATATTAAT
11183704 ATTATAATATATATATTAAAT
1 -TTATAATATATATATT-AAT
11183725 TTATAA-ATAT
1 TTATAATATAT
11183735 CTTACCTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
18 9 0.21
19 11 0.26
20 20 0.48
21 2 0.05
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (19 bp):
TTATAATATATATATTAAT
Found at i:11187579 original size:37 final size:40
Alignment explanation
Indices: 11187486--11187579 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
11187476 AACACACCAG
* *
11187486 TTTGGCACCCAGTGCCTCATTGGATAATTCGAAGTAATAA
1 TTTGGCACCCAGTGTCTCATTGGATAAATCGAAGTAATAA
* * * *
11187526 TTTGACACCCAATGTCTCTTTGGTTAAATCGAAGT-A-AA
1 TTTGGCACCCAGTGTCTCATTGGATAAATCGAAGTAATAA
11187564 -TTGGCACCCAGTGTCT
1 TTTGGCACCCAGTGTCT
11187580 GATCAAATTA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
37 14 0.30
38 2 0.04
39 1 0.02
40 29 0.63
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (40 bp):
TTTGGCACCCAGTGTCTCATTGGATAAATCGAAGTAATAA
Found at i:11187787 original size:11 final size:9
Alignment explanation
Indices: 11187749--11187785 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
11187739 ATTCATTTCA
11187749 ATTCAA-AT
1 ATTCAATAT
*
11187757 AATCAATAT
1 ATTCAATAT
11187766 ATTCAATAT
1 ATTCAATAT
11187775 ATTCAATAT
1 ATTCAATAT
11187784 AT
1 AT
11187786 ATACCAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 5 0.19
9 21 0.81
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41
Consensus pattern (9 bp):
ATTCAATAT
Found at i:11188526 original size:20 final size:21
Alignment explanation
Indices: 11188498--11188548 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
11188488 AAGGTCGTGG
*
11188498 CTTTCTTCTTCCTT-TCTTTC
1 CTTTTTTCTTCCTTGTCTTTC
**
11188518 CTTTTTTCTTTTTTGTCTTTC
1 CTTTTTTCTTCCTTGTCTTTC
*
11188539 TTTTTTTCTT
1 CTTTTTTCTT
11188549 TCTGTTTCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.75
Consensus pattern (21 bp):
CTTTTTTCTTCCTTGTCTTTC
Found at i:11188540 original size:13 final size:12
Alignment explanation
Indices: 11188509--11188571 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 12
11188499 TTTCTTCTTC
*
11188509 CTTTCTTTCCTTT
1 CTTTCTTT-TTTT
11188522 -TTTCTTTTTTGT
1 CTTTCTTTTTT-T
11188534 CTTTCTTTTTTT
1 CTTTCTTTTTTT
11188546 CTTTCTGTTTCGTTT
1 CTTTCT-TTT--TTT
11188561 CGTTTCTTTTT
1 C-TTTCTTTTT
11188572 ATTTATTCTT
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
11 2 0.05
12 15 0.35
13 14 0.33
15 7 0.16
16 5 0.12
ACGTcount: A:0.00, C:0.19, G:0.06, T:0.75
Consensus pattern (12 bp):
CTTTCTTTTTTT
Found at i:11194111 original size:3 final size:3
Alignment explanation
Indices: 11194103--11194132 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
11194093 GATGTGATGC
11194103 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
11194133 TCCATGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:11196151 original size:12 final size:12
Alignment explanation
Indices: 11196136--11196161 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11196126 TCAGCAACAA
11196136 CAACAGCAGCAG
1 CAACAGCAGCAG
11196148 CAACAGCAGCAG
1 CAACAGCAGCAG
11196160 CA
1 CA
11196162 GTTGCTCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.35, G:0.23, T:0.00
Consensus pattern (12 bp):
CAACAGCAGCAG
Found at i:11231082 original size:18 final size:17
Alignment explanation
Indices: 11231059--11231102 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
11231049 TTTATATTTT
11231059 TAAAAATATTAATTACT-A
1 TAAAAATATTAA-T-CTGA
11231077 TAAAAATTATTAATCTGA
1 TAAAAA-TATTAATCTGA
11231095 TAAAAATA
1 TAAAAATA
11231103 ATTTCTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 4 0.17
18 14 0.58
19 6 0.25
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAAAATATTAATCTGA
Found at i:11236445 original size:11 final size:11
Alignment explanation
Indices: 11236429--11236458 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
11236419 TTTTATTTTT
11236429 TATTTTTAAAA
1 TATTTTTAAAA
11236440 TATTTTTAAAA
1 TATTTTTAAAA
11236451 TACTTTTT
1 TA-TTTTT
11236459 TATTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:11236459 original size:37 final size:39
Alignment explanation
Indices: 11236411--11236485 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 39
11236401 TTTAATAAAT
* *
11236411 AAATATTTTTTTA-TTTTTTATTTTTAAAAT-ATTTTTA
1 AAATACTTTTTTATTTTTTTATTTTAAAAATAATTTTTA
11236448 AAATACTTTTTTATTTTTTTATTTTAAAAATAATTTTT
1 AAATACTTTTTTATTTTTTTATTTTAAAAATAATTTTT
11236486 TGGTGTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 12 0.35
38 16 0.47
39 6 0.18
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (39 bp):
AAATACTTTTTTATTTTTTTATTTTAAAAATAATTTTTA
Found at i:11240254 original size:20 final size:20
Alignment explanation
Indices: 11240231--11240337 Score: 61
Period size: 20 Copynumber: 5.3 Consensus size: 20
11240221 GTATGTGTGT
11240231 TCAGGGGTACCAAAGTACAA
1 TCAGGGGTACCAAAGTACAA
* * ** * * *
11240251 TCAGTGGCACGTATGTGCAT
1 TCAGGGGTACCAAAGTACAA
*
11240271 TCAGGGGTACCAAAATACAA
1 TCAGGGGTACCAAAGTACAA
* * *** * * *
11240291 TCAGAGGCATGTATGTGCAT
1 TCAGGGGTACCAAAGTACAA
*
11240311 TCAGGGGTACCGAAGTACAA
1 TCAGGGGTACCAAAGTACAA
11240331 TCAGGGG
1 TCAGGGG
11240338 CATGCATGTA
Statistics
Matches: 55, Mismatches: 32, Indels: 0
0.63 0.37 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.21
Consensus pattern (20 bp):
TCAGGGGTACCAAAGTACAA
Found at i:11240290 original size:120 final size:120
Alignment explanation
Indices: 11240073--11240355 Score: 372
Period size: 120 Copynumber: 2.4 Consensus size: 120
11240063 AAACACATTT
* * * * *
11240073 AGGGGTACCGTAGTACAAACAAGGGCACGTATGTGTGTTCAAGAGTACCGAAGTACAATCAAGGG
1 AGGGGTACCGAAGTACAAACAGGGGCATGTATGTGTGTTCAGGAGTACCAAAGTACAATCAAGGG
* ** *
11240138 CACGTATGTGCGTTCAGGAGTACTGAAGTACAATTAAG-GGCATGTATGTGCATCC
66 CACGTATGTGCATTCAGGAGTACCAAAATACAA-TAAGAGGCATGTATGTGCATCC
* *
11240193 ATGGGTACCGAAGTACAAACAGGGGCATGTATGTGTGTTCAGGGGTACCAAAGTACAATC-AGTG
1 AGGGGTACCGAAGTACAAACAGGGGCATGTATGTGTGTTCAGGAGTACCAAAGTACAATCAAG-G
* * *
11240257 GCACGTATGTGCATTCAGGGGTACCAAAATACAATCAGAGGCATGTATGTGCATTC
65 GCACGTATGTGCATTCAGGAGTACCAAAATACAATAAGAGGCATGTATGTGCATCC
* * * *
11240313 AGGGGTACCGAAGTACAATCAGGGGCATGCATGTATATTCAGG
1 AGGGGTACCGAAGTACAAACAGGGGCATGTATGTGTGTTCAGG
11240356 TTCATACCAT
Statistics
Matches: 142, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
119 5 0.04
120 137 0.96
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (120 bp):
AGGGGTACCGAAGTACAAACAGGGGCATGTATGTGTGTTCAGGAGTACCAAAGTACAATCAAGGG
CACGTATGTGCATTCAGGAGTACCAAAATACAATAAGAGGCATGTATGTGCATCC
Found at i:11240340 original size:40 final size:40
Alignment explanation
Indices: 11240068--11240355 Score: 306
Period size: 40 Copynumber: 7.2 Consensus size: 40
11240058 CATTAAAACA
* * * * *
11240068 CATTTAGGGGTACCGTAGTACAAACAAGGGCACGTATGTG
1 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
** * * * *
11240108 TGTTCAAGAGTACCGAAGTACAATCAAGGGCACGTATGTG
1 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
* * * * *
11240148 CGTTCAGGAGTACTGAAGTACAATTAAGGGCATGTATGTG
1 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
* * *
11240188 CATCCATGGGTACCGAAGTACAAACAGGGGCATGTATGTG
1 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
** * * *
11240228 TGTTCAGGGGTACCAAAGTACAATCAGTGGCACGTATGTG
1 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
* * *
11240268 CATTCAGGGGTACCAAAATACAATCAGAGGCATGTATGTG
1 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
* *
11240308 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGCATGTA
1 CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
*
11240348 TATTCAGG
1 CATTCAGG
11240356 TTCATACCAT
Statistics
Matches: 209, Mismatches: 39, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 209 1.00
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (40 bp):
CATTCAGGGGTACCGAAGTACAATCAGGGGCATGTATGTG
Found at i:11242511 original size:16 final size:16
Alignment explanation
Indices: 11242492--11242524 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
11242482 CGAACCCCCC
11242492 TTTTCTTCTTCCCCAT
1 TTTTCTTCTTCCCCAT
*
11242508 TTTTCTTCTTCTCCAT
1 TTTTCTTCTTCCCCAT
11242524 T
1 T
11242525 CTTATCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.33, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTCTTCTTCCCCAT
Found at i:11248420 original size:31 final size:31
Alignment explanation
Indices: 11248374--11248453 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
11248364 GTCGAGCAAG
* *
11248374 TTTACAATTTGGTCACTCAATTATTAGTAAA
1 TTTACAATTTAGTCACTCAACTATTAGTAAA
*
11248405 TTTATAATTTAGTCACTCAACTATTAGTAAA
1 TTTACAATTTAGTCACTCAACTATTAGTAAA
11248436 TTTACAATTTAGTCACTC
1 TTTACAATTTAGTCACTC
11248454 TTTGCATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.42
Consensus pattern (31 bp):
TTTACAATTTAGTCACTCAACTATTAGTAAA
Found at i:11255261 original size:16 final size:16
Alignment explanation
Indices: 11255237--11255290 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
11255227 TTTGGTTCGC
*
11255237 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
11255253 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
11255269 TGTATTGGAATAGAGG
1 TGTAATGGATTAGAGG
11255285 TGTAAT
1 TGTAAT
11255291 AGCAAATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.30, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:11255541 original size:16 final size:16
Alignment explanation
Indices: 11255504--11255545 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
11255494 TTAATCATAT
*
11255504 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
11255520 TT-AAATATATTATAA
1 TTAAAATATATTATAA
11255535 TTAAAATATAT
1 TTAAAATATAT
11255546 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:11255552 original size:14 final size:15
Alignment explanation
Indices: 11255513--11255554 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
11255503 TTTAAACATA
*
11255513 ATTATTATTAAATAT
1 ATTATAATTAAATAT
11255528 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
11255542 A-TATAATTTAATA
1 ATTATAATTAAATA
11255555 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:11255644 original size:120 final size:121
Alignment explanation
Indices: 11255502--11255770 Score: 447
Period size: 120 Copynumber: 2.2 Consensus size: 121
11255492 ATTTAATCAT
11255502 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
11255567 ATCAATATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAA-GATA
66 ATCAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATG-TA
11255623 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* * *
11255687 ATTAATATTCTTATATGAATTTATTAAAATCATAATATATGATACTATAAAATGTA
66 ATCAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATGTA
* *
11255743 ATTTGAA-ATAATTAATATTAAATA-ATTA
1 ATTTAAACATAATTATTATTAAATATATTA
11255771 ATGTTGACAA
Statistics
Matches: 141, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
119 4 0.03
120 130 0.92
121 7 0.05
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (121 bp):
ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATCAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATGTA
Found at i:11255663 original size:16 final size:16
Alignment explanation
Indices: 11255620--11255665 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
11255610 ACTATAAAAG
*
11255620 ATAATTTAACATA-ATT
1 ATAA-TTAAAATATATT
*
11255636 ATTATT-AAATATATT
1 ATAATTAAAATATATT
11255651 ATAATTAAAATATAT
1 ATAATTAAAATATAT
11255666 AATTTAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 4 0.16
15 10 0.40
16 11 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATTAAAATATATT
Found at i:11255672 original size:14 final size:15
Alignment explanation
Indices: 11255620--11255674 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
11255610 ACTATAAAAG
11255620 ATAATTTAACATA-ATT
1 ATAA-TTAA-ATATATT
*
11255636 ATTATTAAATATATT
1 ATAATTAAATATATT
11255651 ATAATTAAA-ATA-T
1 ATAATTAAATATATT
*
11255664 ATAATTTAATA
1 ATAATTAAATA
11255675 AAATTCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 9 0.26
14 7 0.21
15 15 0.44
16 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATTAAATATATT
Found at i:11255737 original size:61 final size:61
Alignment explanation
Indices: 11255552--11255739 Score: 181
Period size: 61 Copynumber: 3.1 Consensus size: 61
11255542 ATATAATTTA
* * *
11255552 ATAAAATTCTTAATAATCAATATTCTTATATAAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTCTTAATAATTAATATTCTTATATAAATTTATTAAAATCATAATATATGATACT
** * * * * * * *
11255613 ATAAAA--GATAAT--TTAACATAATTATTAT-TAAATATATTATAATTAAAATATATAAT-TT
1 ATAAAATTCTTAATAATT-A-AT-ATTCTTATATAAATTTATTAAAATCATAATATATGATACT
*
11255671 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTATTAAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATTAATATTCTTATATAAATTTATTAAAATCATAATATATGATACT
11255733 ATAAAAT
1 ATAAAAT
11255740 GTAATTTGAA
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
57 1 0.01
58 2 0.02
59 33 0.35
60 14 0.15
61 41 0.43
62 2 0.02
63 2 0.02
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (61 bp):
ATAAAATTCTTAATAATTAATATTCTTATATAAATTTATTAAAATCATAATATATGATACT
Found at i:11263642 original size:46 final size:46
Alignment explanation
Indices: 11263575--11263778 Score: 333
Period size: 46 Copynumber: 4.5 Consensus size: 46
11263565 TGATCAGTGA
*
11263575 CAAGTGACAAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGAT
1 CAAGTGAAAAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGAT
*
11263621 CAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGAT
1 CAAGTGAAAAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGAT
11263667 CAAGTGAAAAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGAT
1 CAAGTGAAAAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGAT
* *
11263713 CAAGTGACAAAGTGATAAGTGGTAGCCT-AGCTACACTTATTTGAT
1 CAAGTGAAAAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGAT
* *
11263758 C-AG-GGACAAGTGATAAGTGGT
1 CAAGTGAAAAAGTGATAAGTGGT
11263779 CATATGTAAG
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
43 15 0.10
44 2 0.01
45 17 0.11
46 116 0.77
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (46 bp):
CAAGTGAAAAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGAT
Found at i:11268428 original size:46 final size:46
Alignment explanation
Indices: 11268325--11268585 Score: 456
Period size: 46 Copynumber: 5.7 Consensus size: 46
11268315 CTTACGTATG
*
11268325 ACCACTTATCAC-TTGTC-CTTGATCAGATAAGTGTAACT-AGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
*
11268368 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
*
11268414 ACCACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
*
11268460 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGTTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
*
11268506 ACCACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
11268552 ACCACTTATCACTTTGTCACTTGATCAGATAAGT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGT
11268586 ACTCAAATCT
Statistics
Matches: 206, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
43 12 0.06
44 5 0.02
45 20 0.10
46 169 0.82
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (46 bp):
ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
Found at i:11271998 original size:19 final size:18
Alignment explanation
Indices: 11271974--11272020 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
11271964 TTTCTATATA
*
11271974 TTTTATAATTTTAATGAT
1 TTTTATAATTTTAATGCT
*
11271992 TTTT-TATATTTTTATGCT
1 TTTTATA-ATTTTAATGCT
11272010 TTTTATAATTT
1 TTTTATAATTT
11272021 CAAAATGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 21 0.84
19 2 0.08
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (18 bp):
TTTTATAATTTTAATGCT
Found at i:11272112 original size:2 final size:2
Alignment explanation
Indices: 11272105--11272134 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
11272095 CTTGTTTTAA
11272105 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11272135 TATTTTTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11272855 original size:31 final size:31
Alignment explanation
Indices: 11272820--11272879 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
11272810 AAGAGTTCAA
* * *
11272820 AATTTGAAAAGTATAGGGACTAAAATTGACC
1 AATTTGAAAAGTAAAAGAACTAAAATTGACC
11272851 AATTTGAAAAGTAAAAGAACTAAAATTGA
1 AATTTGAAAAGTAAAAGAACTAAAATTGA
11272880 TCAAATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.25
Consensus pattern (31 bp):
AATTTGAAAAGTAAAAGAACTAAAATTGACC
Found at i:11273216 original size:3 final size:3
Alignment explanation
Indices: 11273208--11273236 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
11273198 ATCACATGTT
11273208 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11273237 TGGATGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:11277572 original size:3 final size:3
Alignment explanation
Indices: 11277564--11277592 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
11277554 ATCACATGTT
11277564 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11277593 TGGATGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:11280583 original size:24 final size:25
Alignment explanation
Indices: 11280543--11280604 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 25
11280533 TCAGGTAAAA
*
11280543 TTGAGTTTACAAA-GAAGAGAAA-AAC
1 TTGA-TTTTCAAAGGAAG-GAAAGAAC
11280568 -TGATTTTCAAAGGAAGGAAAGAAC
1 TTGATTTTCAAAGGAAGGAAAGAAC
*
11280592 TTTATTTTCAAAG
1 TTGATTTTCAAAG
11280605 AAAGCAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 11 0.34
24 10 0.31
25 11 0.34
ACGTcount: A:0.45, C:0.08, G:0.19, T:0.27
Consensus pattern (25 bp):
TTGATTTTCAAAGGAAGGAAAGAAC
Found at i:11286327 original size:17 final size:17
Alignment explanation
Indices: 11286305--11286348 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
11286295 ACATGGTCTA
11286305 CCGCACGGTCGTGTGTC
1 CCGCACGGTCGTGTGTC
11286322 CCGCACGGTCGTGTGTC
1 CCGCACGGTCGTGTGTC
*
11286339 CCACACGGTC
1 CCGCACGGTC
11286349 ACCTTACACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.09, C:0.39, G:0.32, T:0.20
Consensus pattern (17 bp):
CCGCACGGTCGTGTGTC
Found at i:11288497 original size:44 final size:43
Alignment explanation
Indices: 11288404--11288568 Score: 143
Period size: 44 Copynumber: 3.8 Consensus size: 43
11288394 TAGTGGTTCG
* * * * *
11288404 GTCTACTCCACTACAACTTCAGGGAGATAGGA-TTATTGAATTCA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTT--CTTCA
* * * * *
11288448 ATCTGCTCCACTGCAACCTCAAGGAGTTAAGATTTGCTTCTTCA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TTCTTCA
* ** * *
11288492 GTCTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTCA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTCT-TCA
*
11288536 GTCTGCTCCGCTGCAACTTCAGGGAGATAAGAC
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGAC
11288569 CCGATACGAT
Statistics
Matches: 94, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
43 3 0.03
44 87 0.93
45 2 0.02
46 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (43 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTCTTCA
Found at i:11288936 original size:87 final size:87
Alignment explanation
Indices: 11288814--11289232 Score: 703
Period size: 87 Copynumber: 4.8 Consensus size: 87
11288804 ACTAGTGCTT
11288814 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
*
11288879 CGATCTGCTTCGCTGTTAATGC
66 CGATCTGCTTCGCTGTTAACGC
* * * *
11288901 AGGAAGGAAAAATCTGCTATCTTTAACCAGCTCCACTACAACCAATGGAGGCAATGCTTCGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
11288966 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* * * *
11288988 ACGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAAGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
11289053 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
*
11289075 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGTAAGGCTTCGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
*
11289140 CGATTTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* * * *
11289162 AGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
11289227 CGATCT
66 CGATCT
11289233 TTACTGATCT
Statistics
Matches: 308, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 308 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (87 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
CGATCTGCTTCGCTGTTAACGC
Found at i:11290870 original size:27 final size:27
Alignment explanation
Indices: 11290824--11290875 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
11290814 TTCACCTTGA
* *
11290824 CTTCTCCTTTTTCCTTTTTCTTTTTTT
1 CTTCTCCTTTTTCCATTTTCATTTTTT
11290851 CTTCTCTCTTTTT-CATTTTCATTTT
1 CTTCTC-CTTTTTCCATTTTCATTTT
11290876 GACTTTGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.71
Consensus pattern (27 bp):
CTTCTCCTTTTTCCATTTTCATTTTTT
Found at i:11290889 original size:6 final size:6
Alignment explanation
Indices: 11290860--11290935 Score: 75
Period size: 6 Copynumber: 12.7 Consensus size: 6
11290850 TCTTCTCTCT
* * * *
11290860 TTTTCA TTTTCA TTTTGA CTTTGA TCTTGA TTTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA -TTTTGA TTTTGA TTTTGA
*
11290909 TTTTTGA TTTT-- TTTTGT TTTTGA TTTT
1 -TTTTGA TTTTGA TTTTGA TTTTGA TTTT
11290936 TTTTAATCTT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
4 4 0.07
6 45 0.75
7 11 0.18
ACGTcount: A:0.13, C:0.05, G:0.12, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:11290897 original size:13 final size:13
Alignment explanation
Indices: 11290866--11290935 Score: 62
Period size: 13 Copynumber: 5.8 Consensus size: 13
11290856 CTCTTTTTCA
*
11290866 TTTTCATTTTGA-
1 TTTTGATTTTGAT
* *
11290878 CTTTGATCTTGAT
1 TTTTGATTTTGAT
11290891 TTTTGATTTTGA-
1 TTTTGATTTTGAT
11290903 TTTTGATTTTTGA-
1 TTTTGA-TTTTGAT
11290916 TTTT--TTTTG-T
1 TTTTGATTTTGAT
11290926 TTTTGATTTT
1 TTTTGATTTT
11290936 TTTTAATCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
10 9 0.19
12 19 0.40
13 20 0.42
ACGTcount: A:0.13, C:0.04, G:0.13, T:0.70
Consensus pattern (13 bp):
TTTTGATTTTGAT
Found at i:11290916 original size:19 final size:19
Alignment explanation
Indices: 11290872--11290935 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
11290862 TTCATTTTCA
* *
11290872 TTTTGACTTTGATCTTGAT
1 TTTTGATTTTGATTTTGAT
11290891 TTTTGATTTTGATTTTGAT
1 TTTTGATTTTGATTTTGAT
11290910 TTTTGATTTT--TTTTG-T
1 TTTTGATTTTGATTTTGAT
11290926 TTTTGATTTT
1 TTTTGATTTT
11290936 TTTTAATCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
16 11 0.26
17 5 0.12
19 27 0.63
ACGTcount: A:0.12, C:0.03, G:0.14, T:0.70
Consensus pattern (19 bp):
TTTTGATTTTGATTTTGAT
Found at i:11290936 original size:7 final size:7
Alignment explanation
Indices: 11290886--11290920 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
11290876 GACTTTGATC
11290886 TTGATTT
1 TTGATTT
11290893 TTGA-TT
1 TTGATTT
11290899 TTGA-TT
1 TTGATTT
11290905 TTGATTT
1 TTGATTT
11290912 TTGATTT
1 TTGATTT
11290919 TT
1 TT
11290921 TTTGTTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.44
7 15 0.56
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (7 bp):
TTGATTT
Found at i:11304090 original size:13 final size:13
Alignment explanation
Indices: 11304072--11304105 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
11304062 AATCCAAGTC
*
11304072 AAATAAAAAATTA
1 AAATAAAAAACTA
*
11304085 AAATAAATAACTA
1 AAATAAAAAACTA
11304098 AAATAAAA
1 AAATAAAA
11304106 TAATCAATCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATAAAAAACTA
Found at i:11311897 original size:20 final size:19
Alignment explanation
Indices: 11311859--11311897 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
11311849 AATAGGAAGA
* *
11311859 ATTTATTTTTTTATTAAAT
1 ATTTATTTTTTAATGAAAT
11311878 ATTTATTATTTTAATGAAAT
1 ATTTATT-TTTTAATGAAAT
11311898 TTTTGTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTATTTTTTAATGAAAT
Found at i:11332409 original size:30 final size:28
Alignment explanation
Indices: 11332373--11332443 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
11332363 TTTTATTTAT
11332373 TTTTTTTAATTTTAAAATACTTTTTTAAAA
1 TTTTTTTAATTTTAAAATA--TTTTTAAAA
11332403 TTTTTTTAATTTTAAAATATTTTTAAAA
1 TTTTTTTAATTTTAAAATATTTTTAAAA
*
11332431 TATTTTTAATTTT
1 TTTTTTTAATTTT
11332444 TTTAATTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 21 0.52
30 19 0.47
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (28 bp):
TTTTTTTAATTTTAAAATATTTTTAAAA
Found at i:11332451 original size:37 final size:38
Alignment explanation
Indices: 11332382--11332501 Score: 152
Period size: 37 Copynumber: 3.0 Consensus size: 38
11332372 TTTTTTTTAA
11332382 TTTTAAAATACTTTTTTAAAATTTTTTTAATTTTAAAATAT
1 TTTTAAAATA-TTTTTT--AATTTTTTTAATTTTAAAATAT
11332423 TTTTAAAATA-TTTTTAATTTTTTTAATTTTAAAATAT
1 TTTTAAAATATTTTTTAATTTTTTTAATTTTAAAATAT
*
11332460 TTTTAAAATAAATTTTTTATTTTTGTTTTAATTTTTAAAATA
1 TTTTAAAAT--ATTTTTTA-ATTT-TTTTAA-TTTTAAAATA
11332502 AATTTTTTGG
Statistics
Matches: 72, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
37 31 0.43
39 6 0.08
40 6 0.08
41 13 0.18
42 6 0.08
43 10 0.14
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.61
Consensus pattern (38 bp):
TTTTAAAATATTTTTTAATTTTTTTAATTTTAAAATAT
Found at i:11332475 original size:32 final size:33
Alignment explanation
Indices: 11332373--11332509 Score: 124
Period size: 37 Copynumber: 4.2 Consensus size: 33
11332363 TTTTATTTAT
* *
11332373 TTTTTTTAATTTTAAAATACTTTTT--TA-AAA
1 TTTTTTTAATTTTAAAATAATTTTTAAAATAAA
11332403 TTTTTTTAATTTTAAAAT-ATTTTTAAAATATTTTTAA
1 TTTTTTTAATTTTAAAATAATTTTTAAAATA-----AA
11332440 TTTTTTTAATTTTAAAAT-ATTTTTAAAATAAA
1 TTTTTTTAATTTTAAAATAATTTTTAAAATAAA
* ****
11332472 -TTTTTTATTTTTGTTTTAATTTTTAAAATAAA
1 TTTTTTTAATTTTAAAATAATTTTTAAAATAAA
11332504 TTTTTT
1 TTTTTT
11332510 GGTATTTATT
Statistics
Matches: 90, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
29 5 0.06
30 18 0.20
31 13 0.14
32 17 0.19
33 5 0.06
37 32 0.36
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.63
Consensus pattern (33 bp):
TTTTTTTAATTTTAAAATAATTTTTAAAATAAA
Found at i:11332476 original size:13 final size:11
Alignment explanation
Indices: 11332412--11332469 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 11
11332402 ATTTTTTTAA
11332412 TTTTAAAATAT
1 TTTTAAAATAT
11332423 TTTTAAAATAT
1 TTTTAAAATAT
11332434 TTTT--AAT-T
1 TTTTAAAATAT
*
11332442 TTTT----TAA
1 TTTTAAAATAT
11332449 TTTTAAAATAT
1 TTTTAAAATAT
11332460 TTTTAAAATA
1 TTTTAAAATA
11332470 AATTTTTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
6 1 0.03
7 4 0.10
8 5 0.12
9 3 0.08
11 27 0.68
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:11332522 original size:32 final size:32
Alignment explanation
Indices: 11332458--11332522 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
11332448 ATTTTAAAAT
* *
11332458 ATTTTTAAAATAAATTTTTTATTTTTGTTTTA
1 ATTTTTAAAATAAATTTTTTATATTTGATTTA
*
11332490 ATTTTTAAAATAAATTTTTTGGTATTT-ATTTA
1 ATTTTTAAAATAAATTTTTT-ATATTTGATTTA
11332522 A
1 A
11332523 AAAACGGGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 25 0.86
33 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.62
Consensus pattern (32 bp):
ATTTTTAAAATAAATTTTTTATATTTGATTTA
Found at i:11332783 original size:29 final size:29
Alignment explanation
Indices: 11332702--11332772 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
11332692 AATTTTAAAA
* * *
11332702 TTATACATAAACTTTAGTCTAATGTACAATT
1 TTATACATAAACTTTAAT-T-TTGTGCAATT
*
11332733 TTATACATGAACTTTAATTTTGTGCAATT
1 TTATACATAAACTTTAATTTTGTGCAATT
11332762 TTATACATAAA
1 TTATACATAAA
11332773 ATTTTGATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 18 0.51
30 1 0.03
31 16 0.46
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (29 bp):
TTATACATAAACTTTAATTTTGTGCAATT
Found at i:11335380 original size:8 final size:8
Alignment explanation
Indices: 11335369--11335393 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
11335359 TGTTTTGAAA
11335369 TTTAAAAT
1 TTTAAAAT
11335377 TTTAAAAT
1 TTTAAAAT
11335385 TTTAAAAT
1 TTTAAAAT
11335393 T
1 T
11335394 AAAAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTAAAAT
Found at i:11362935 original size:41 final size:41
Alignment explanation
Indices: 11362878--11362961 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
11362868 AGAAATAGAG
11362878 AAATGACATCATATTCAATCATATGTGTGGATGCCACTTGT
1 AAATGACATCATATTCAATCATATGTGTGGATGCCACTTGT
11362919 AAATGACATCATATTCAATCATATGTGTGGATGCCACTTGT
1 AAATGACATCATATTCAATCATATGTGTGGATGCCACTTGT
11362960 AA
1 AA
11362962 CACATGCATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (41 bp):
AAATGACATCATATTCAATCATATGTGTGGATGCCACTTGT
Found at i:11365500 original size:24 final size:22
Alignment explanation
Indices: 11365460--11365504 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
11365450 GGTTTTATGG
11365460 TTTTTAGGGTTTAGGGTGCAGGC
1 TTTTTAGGGTTTAGGGT-CAGGC
11365483 TTTTTAGGAG-TTAGGGGTCAGG
1 TTTTTAGG-GTTTA-GGGTCAGG
11365505 AAAATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.16, C:0.07, G:0.40, T:0.38
Consensus pattern (22 bp):
TTTTTAGGGTTTAGGGTCAGGC
Found at i:11365674 original size:124 final size:124
Alignment explanation
Indices: 11365560--11365800 Score: 378
Period size: 124 Copynumber: 1.9 Consensus size: 124
11365550 CGCTTCTACT
* * *
11365560 AGGATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTGGACGCGATTTCGCTACAG-TGGT
1 AGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGT
*
11365624 CATGT-GAGAAATAATTTTTTTTGACGTTTTCTGAGGAAATAGTATAAAATCGCTGAAACC
66 CATGTAG-GAAATAATTTTTTTTGACG-TTTCTGAGCAAATAGTATAAAATCGCTGAAACC
* *
11365684 AGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGT
1 AGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGT
* *
11365749 CATGTAGGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTGTCAAATCGC
66 CATGTAGGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGC
11365801 GCCCTCGTGG
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
124 78 0.73
125 28 0.26
126 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (124 bp):
AGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGT
CATGTAGGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTGAAACC
Found at i:11367090 original size:29 final size:29
Alignment explanation
Indices: 11367056--11367111 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
11367046 TGAAAATATT
*
11367056 AAAAATTTTAAAATTAT-TTAAAAAAATA
1 AAAAAATTTAAAATTATCTTAAAAAAATA
*
11367084 AAAAAATTTAAAATTTTCTTAAAAAAAT
1 AAAAAATTTAAAATTATCTTAAAAAAAT
11367112 GAAATTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (29 bp):
AAAAAATTTAAAATTATCTTAAAAAAATA
Found at i:11367183 original size:22 final size:22
Alignment explanation
Indices: 11367153--11367194 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
11367143 ATTTGGAGAT
*
11367153 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
11367175 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
11367195 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:11367215 original size:52 final size:51
Alignment explanation
Indices: 11367144--11367246 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
11367134 TTAATATGGA
* * *
11367144 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTT-GAAGGGAA-TTGAGAG
*
11367195 TTTGAGAGAATTTTGGAAGGAAATTGATAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
11367247 AAATTTTGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 32 0.71
53 9 0.20
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.33
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:11367221 original size:22 final size:23
Alignment explanation
Indices: 11367196--11367287 Score: 111
Period size: 22 Copynumber: 4.2 Consensus size: 23
11367186 ATTTGAGAGT
11367196 TTGAGAG-AATTTTGGAAGGAAA
1 TTGAGAGAAATTTTGGAAGGAAA
* *
11367218 TTGATAGAAATTTT-GAAGGGAA
1 TTGAGAGAAATTTTGGAAGGAAA
*
11367240 TTGAGAGAAATTTTGAAAGG-AA
1 TTGAGAGAAATTTTGGAAGGAAA
* *
11367262 TTGAGAG-AATTTTTGAAAGAAA
1 TTGAGAGAAATTTTGGAAGGAAA
11367284 TTGA
1 TTGA
11367288 TATTGAATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
21 9 0.15
22 41 0.68
23 10 0.17
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (23 bp):
TTGAGAGAAATTTTGGAAGGAAA
Found at i:11367245 original size:44 final size:44
Alignment explanation
Indices: 11367196--11367287 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
11367186 ATTTGAGAGT
* * * *
11367196 TTGAGAG-AATTTTGGAAGGAAATTGATAGAAATTTTGAAGGGAA
1 TTGAGAGAAATTTTGAAAGG-AATTGAGAGAAATTTTGAAAGAAA
*
11367240 TTGAGAGAAATTTTGAAAGGAATTGAGAGAATTTTTGAAAGAAA
1 TTGAGAGAAATTTTGAAAGGAATTGAGAGAAATTTTGAAAGAAA
11367284 TTGA
1 TTGA
11367288 TATTGAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 31 0.74
45 11 0.26
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (44 bp):
TTGAGAGAAATTTTGAAAGGAATTGAGAGAAATTTTGAAAGAAA
Done.