Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 44 of 216
Found at i:12519460 original size:189 final size:195
Alignment explanation
Indices: 12519257--12519607 Score: 525
Period size: 195 Copynumber: 1.8 Consensus size: 195
12519247 ATCCTATCAC
* * *
12519257 AAATTTAAAACACAAATGTCTGTTT-AAAATAACATATAATAAATAATAAAACATATAGTTTGAA
1 AAATTTAAAACACAAATGTCTATTTAAAAATAACATACAACAAATAATAAAACATATAGTTTGAA
*
12519321 ACTAA-TTAATAATAACACATG-A-A-ATATGTATGTTATTCAAATAAAAAATTAGATTAAATTG
66 ACTAATTTAATAATAACACATGAAGATATATGTATGTTATTAAAATAAAAAATTAGATTAAATTG
12519382 TTTATCATGGTGTTGTCATCAA-CTTAAGTCAGTCCTATCATACGTATATGCGTGTGGAGACCTT
131 TTTATCATGGTGTTGTCATCAATCTTAAGTCAGTCCTATCATACGTATATGCGTGTGGAGACCTT
* * * * * * *
12519446 AAATTTAGAACACAAATTTCTATTTAAAAATAGCATACAACAAGTACTAAAACTTATGGTTTGAA
1 AAATTTAAAACACAAATGTCTATTTAAAAATAACATACAACAAATAATAAAACATATAGTTTGAA
*
12519511 ACTAATTTAATAATAACACATGAAGTATATATGTATGTTATTAAAATGAAAAATTAGATTAAATT
66 ACTAATTTAATAATAACACATGAAG-ATATATGTATGTTATTAAAATAAAAAATTAGATTAAATT
* *
12519576 GTTTATTATGGTGTTGTTATCAATCTTAAGTC
130 GTTTATCATGGTGTTGTCATCAATCTTAAGTC
12519608 GGTGTCGAAT
Statistics
Matches: 141, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
189 22 0.16
190 37 0.26
191 16 0.11
192 1 0.01
194 1 0.01
195 56 0.40
196 8 0.06
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (195 bp):
AAATTTAAAACACAAATGTCTATTTAAAAATAACATACAACAAATAATAAAACATATAGTTTGAA
ACTAATTTAATAATAACACATGAAGATATATGTATGTTATTAAAATAAAAAATTAGATTAAATTG
TTTATCATGGTGTTGTCATCAATCTTAAGTCAGTCCTATCATACGTATATGCGTGTGGAGACCTT
Found at i:12521301 original size:208 final size:208
Alignment explanation
Indices: 12520943--12521359 Score: 816
Period size: 208 Copynumber: 2.0 Consensus size: 208
12520933 TCTATGATAC
* *
12520943 TTTATAAATTGGTAGTTTTTTCTCTTTTGAGAAGAAAAACAATACAACTCTTTGGAATACATGAA
1 TTTATAAATTGGTACTTTTTTCTCTTTTGAGAAGAAAAACAATACAACTCTTTGAAATACATGAA
12521008 TTTAAATTGAATTTTAAATGTTTAAAATGTTTTTAATATTAGATAAATATTATATAATAAATTAT
66 TTTAAATTGAATTTTAAATGTTTAAAATGTTTTTAATATTAGATAAATATTATATAATAAATTAT
12521073 TAATAAAGATATCCATTTGATTTTAAGGGTACAATCTTAATTTTAAAATGATTTAGATTTATCGA
131 TAATAAAGATATCCATTTGATTTTAAGGGTACAATCTTAATTTTAAAATGATTTAGATTTATCGA
12521138 TTGAGTCTTAATT
196 TTGAGTCTTAATT
12521151 TTTATAAATTGGTACTTTTTTCTCTTTTGAGAAGAAAAACAATACAACTCTTTGAAATACATGAA
1 TTTATAAATTGGTACTTTTTTCTCTTTTGAGAAGAAAAACAATACAACTCTTTGAAATACATGAA
12521216 TTTAAATTGAATTTTAAATGTTTAAAATGTTTTTAATATTAGATAAATATTATATAATAAATTAT
66 TTTAAATTGAATTTTAAATGTTTAAAATGTTTTTAATATTAGATAAATATTATATAATAAATTAT
12521281 TAATAAAGATATCCATTTGATTTTAAGGGTACAATCTTAATTTTAAAATGATTTAGATTTATCGA
131 TAATAAAGATATCCATTTGATTTTAAGGGTACAATCTTAATTTTAAAATGATTTAGATTTATCGA
12521346 TTGAGTCTTAATT
196 TTGAGTCTTAATT
12521359 T
1 T
12521360 GATAGGCATA
Statistics
Matches: 207, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
208 207 1.00
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (208 bp):
TTTATAAATTGGTACTTTTTTCTCTTTTGAGAAGAAAAACAATACAACTCTTTGAAATACATGAA
TTTAAATTGAATTTTAAATGTTTAAAATGTTTTTAATATTAGATAAATATTATATAATAAATTAT
TAATAAAGATATCCATTTGATTTTAAGGGTACAATCTTAATTTTAAAATGATTTAGATTTATCGA
TTGAGTCTTAATT
Found at i:12522475 original size:61 final size:61
Alignment explanation
Indices: 12522380--12522495 Score: 196
Period size: 61 Copynumber: 1.9 Consensus size: 61
12522370 AATTAATTAC
* * *
12522380 ATTAATATTAAATTAATAAAATATTATCTAGATAAATATTTAATTTAATTTAATATCTCAT
1 ATTAATATTAAATTAATAAAATAATAACTAGATAAATATTAAATTTAATTTAATATCTCAT
*
12522441 ATTAATATTAAATTAATAAAGTAATAACTAGATAAATATTAAATTTAATTTAATA
1 ATTAATATTAAATTAATAAAATAATAACTAGATAAATATTAAATTTAATTTAATA
12522496 ATAAATTCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (61 bp):
ATTAATATTAAATTAATAAAATAATAACTAGATAAATATTAAATTTAATTTAATATCTCAT
Found at i:12525751 original size:25 final size:25
Alignment explanation
Indices: 12525714--12525808 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
12525704 CGGGCACACC
* *
12525714 ACAGCTCGTATGAGCTTCCTATTAT
1 ACAGCTCGCATGAGCTTCCCATTAT
*
12525739 ACAGCTCGCATGAGCTTCCCGTTAT
1 ACAGCTCGCATGAGCTTCCCATTAT
*
12525764 TCAGCTCGCATGAGCTTCCCATTAT
1 ACAGCTCGCATGAGCTTCCCATTAT
* * *
12525789 TCAGCTCGGAAGAGCTTCCC
1 ACAGCTCGCATGAGCTTCCC
12525809 GTTTATAGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (25 bp):
ACAGCTCGCATGAGCTTCCCATTAT
Found at i:12525777 original size:50 final size:50
Alignment explanation
Indices: 12525715--12525811 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
12525705 GGGCACACCA
* * *
12525715 CAGCTCGTATGAGCTTCCTATTATACAGCTCGCATGAGCTTCCCGTTATT
1 CAGCTCGCATGAGCTTCCCATTATACAGCTCGCAAGAGCTTCCCGTTATT
* *
12525765 CAGCTCGCATGAGCTTCCCATTATTCAGCTCGGAAGAGCTTCCCGTT
1 CAGCTCGCATGAGCTTCCCATTATACAGCTCGCAAGAGCTTCCCGTT
12525812 TATAGATCGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.31
Consensus pattern (50 bp):
CAGCTCGCATGAGCTTCCCATTATACAGCTCGCAAGAGCTTCCCGTTATT
Found at i:12533337 original size:25 final size:25
Alignment explanation
Indices: 12533234--12533352 Score: 107
Period size: 25 Copynumber: 4.8 Consensus size: 25
12533224 GACACACCAT
*
12533234 AGCTCGTATGAGCTTCCCGTTA-T-
1 AGCTCGCATGAGCTTCCCGTTATTC
* * * * * *
12533257 AGCTAGCATTAGATTTCTGTTATAC
1 AGCTCGCATGAGCTTCCCGTTATTC
* * *
12533282 AGCTCACATGAGCTTCTCGTTATTT
1 AGCTCGCATGAGCTTCCCGTTATTC
*
12533307 AGCTCGCATGAGCTTCCCGTTGTTC
1 AGCTCGCATGAGCTTCCCGTTATTC
* *
12533332 AGCTCGGAGGAGCTTCCCGTT
1 AGCTCGCATGAGCTTCCCGTT
12533353 TATAGATCAT
Statistics
Matches: 72, Mismatches: 22, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
23 16 0.22
25 56 0.78
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.34
Consensus pattern (25 bp):
AGCTCGCATGAGCTTCCCGTTATTC
Found at i:12548862 original size:3 final size:3
Alignment explanation
Indices: 12548854--12548883 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
12548844 AGGGAAAGGT
12548854 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA
1 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA
12548884 TAATATTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GTA
Found at i:12551809 original size:74 final size:74
Alignment explanation
Indices: 12551688--12551832 Score: 281
Period size: 74 Copynumber: 2.0 Consensus size: 74
12551678 AATGTTAAGC
*
12551688 GGATGCAGAGAAGGTATGGCAGAGGATCCAACGTGTTCAATTTGTGGAGTAATGGAGGAATTAGT
1 GGATGCAGAGAAGGTATGGCAGAGGATCCAACGTGTTCAATTTGTGGAGTAATGGAGGAACTAGT
12551753 CTTACAAGT
66 CTTACAAGT
12551762 GGATGCAGAGAAGGTATGGCAGAGGATCCAACGTGTTCAATTTGTGGAGTAATGGAGGAACTAGT
1 GGATGCAGAGAAGGTATGGCAGAGGATCCAACGTGTTCAATTTGTGGAGTAATGGAGGAACTAGT
12551827 CTTACA
66 CTTACA
12551833 CGTTTTAAGA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.25
Consensus pattern (74 bp):
GGATGCAGAGAAGGTATGGCAGAGGATCCAACGTGTTCAATTTGTGGAGTAATGGAGGAACTAGT
CTTACAAGT
Found at i:12561215 original size:18 final size:18
Alignment explanation
Indices: 12561175--12561218 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
12561165 AAAATAAACA
12561175 TTTTGAAATTGAATAACG
1 TTTTGAAATTGAATAACG
* *
12561193 ATTTGTAAA-TGAATAATG
1 TTTTG-AAATTGAATAACG
12561211 TTTTGAAA
1 TTTTGAAA
12561219 ACGAACAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 3 0.14
18 16 0.73
19 3 0.14
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (18 bp):
TTTTGAAATTGAATAACG
Found at i:12561676 original size:20 final size:18
Alignment explanation
Indices: 12561576--12561677 Score: 72
Period size: 20 Copynumber: 5.7 Consensus size: 18
12561566 TTCAACTATA
12561576 ATTAAACTTAATCACTTTAAT
1 ATTAAA-TTAAT-A-TTTAAT
12561597 ATTAAATTAATA--TAAT
1 ATTAAATTAATATTTAAT
* * *
12561613 ATT-TATTAAGA-TAAAT
1 ATTAAATTAATATTTAAT
*
12561629 ATTAGATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
12561646 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
12561666 ATTAAATTAATA
1 ATTAAATTAATA
12561678 AAATACTATT
Statistics
Matches: 67, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
15 6 0.09
16 14 0.21
17 16 0.24
18 1 0.01
19 4 0.06
20 20 0.30
21 6 0.09
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:12561710 original size:68 final size:69
Alignment explanation
Indices: 12561584--12561718 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 69
12561574 TAATTAAACT
* * *
12561584 TAATCACTTTAATATTAAATTAATATAATATTTATTAAGATAAATATTAGATTAAATTTAATATT
1 TAATCACTTTAATATTAAATTAATAAAATATCTATTAAGATAAATATTAAATTAAATTTAATATT
12561649 AAGA
66 AAGA
*
12561653 TAATCACTTTAATATTAAATTAATAAAATA-CTATTAAGATAAGTATTAAATTAAATTTAATATT
1 TAATCACTTTAATATTAAATTAATAAAATATCTATTAAGATAAATATTAAATTAAATTTAATATT
12561717 AA
66 AA
12561719 ACTATTAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
68 33 0.53
69 29 0.47
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (69 bp):
TAATCACTTTAATATTAAATTAATAAAATATCTATTAAGATAAATATTAAATTAAATTTAATATT
AAGA
Found at i:12564736 original size:20 final size:20
Alignment explanation
Indices: 12564679--12564736 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
12564669 TTCGTACTCT
*
12564679 TGTTAGCACTACGGTGCTCC
1 TGTTAGCACTACGGTGCTCA
** **
12564699 TAATAGCAC-ATCCATGCTCA
1 TGTTAGCACTA-CGGTGCTCA
12564719 TGTTAGCACTACGGTGCT
1 TGTTAGCACTACGGTGCT
12564737 TCTGATGGCA
Statistics
Matches: 27, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (20 bp):
TGTTAGCACTACGGTGCTCA
Found at i:12573846 original size:13 final size:13
Alignment explanation
Indices: 12573806--12573922 Score: 60
Period size: 13 Copynumber: 8.9 Consensus size: 13
12573796 TGTGATTACA
* *
12573806 AAATGATTGTATT
1 AAATGATTATATG
12573819 AAATG-TGTAATATG
1 AAATGAT-T-ATATG
12573833 AAATGATTATATG
1 AAATGATTATATG
* * * *
12573846 AGACGGTTATACG
1 AAATGATTATATG
* *
12573859 -AATGGTTATATA
1 AAATGATTATATG
*
12573871 AAATGAATATATG
1 AAATGATTATATG
* * *
12573884 AAAGGATTGTTTG
1 AAATGATTATATG
12573897 -AATCGATTATATGG
1 AAAT-GATTATAT-G
*
12573911 AAATAATTATAT
1 AAATGATTATAT
12573923 AAAACTGTTT
Statistics
Matches: 76, Mismatches: 21, Indels: 13
0.69 0.19 0.12
Matches are distributed among these distances:
12 11 0.14
13 44 0.58
14 17 0.22
15 4 0.05
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.37
Consensus pattern (13 bp):
AAATGATTATATG
Found at i:12585081 original size:32 final size:32
Alignment explanation
Indices: 12585034--12585120 Score: 120
Period size: 32 Copynumber: 2.7 Consensus size: 32
12585024 TTGAAATTAG
*
12585034 TTTGTTGGATTTTGAAATTATTATGTTTTAAA
1 TTTGTTGGATATTGAAATTATTATGTTTTAAA
* * *
12585066 TTTGTTAGATATTGAATTTATTATGTTTTAAG
1 TTTGTTGGATATTGAAATTATTATGTTTTAAA
* *
12585098 CTTGTTGGATATTGAAATGATTA
1 TTTGTTGGATATTGAAATTATTA
12585121 ACAATGACAA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.29, C:0.01, G:0.17, T:0.53
Consensus pattern (32 bp):
TTTGTTGGATATTGAAATTATTATGTTTTAAA
Found at i:12602726 original size:33 final size:33
Alignment explanation
Indices: 12602689--12602753 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
12602679 TTCTTGAACC
12602689 GGAGAAATTGGGACGTTACTACTTGTCCCGTAT
1 GGAGAAATTGGGACGTTACTACTTGTCCCGTAT
12602722 GGAGAAATTGGGACGTTACTACTTGTCCCGTA
1 GGAGAAATTGGGACGTTACTACTTGTCCCGTA
12602754 CTTAGATGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (33 bp):
GGAGAAATTGGGACGTTACTACTTGTCCCGTAT
Found at i:12607782 original size:26 final size:27
Alignment explanation
Indices: 12607753--12607826 Score: 91
Period size: 26 Copynumber: 2.7 Consensus size: 27
12607743 TTTTTATTGG
12607753 TTATAT-TTAAAATTTAAAA-TTATAAT
1 TTATATATTAAAATTTAAAATTTAT-AT
*
12607779 TTATATATT-CAATTTAAAATTTATAT
1 TTATATATTAAAATTTAAAATTTATAT
12607805 TTCATATATTAAAATATTAAAA
1 TT-ATATATTAAAAT-TTAAAA
12607827 ATTTTTATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
26 19 0.46
27 13 0.32
28 3 0.07
29 6 0.15
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (27 bp):
TTATATATTAAAATTTAAAATTTATAT
Found at i:12607805 original size:18 final size:21
Alignment explanation
Indices: 12607771--12607819 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
12607761 AAAATTTAAA
*
12607771 ATTATAATTTATATATTCA-AT
1 ATTAAAATTTATAT-TTCATAT
12607792 -TTAAAATTTATATTTCATAT
1 ATTAAAATTTATATTTCATAT
12607812 ATTAAAAT
1 ATTAAAAT
12607820 ATTAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 4 0.16
20 14 0.56
21 7 0.28
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTAAAATTTATATTTCATAT
Found at i:12616302 original size:29 final size:29
Alignment explanation
Indices: 12616270--12616331 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
12616260 AACCAAAAAA
*
12616270 GGCCGTTTTTTTCAA-AATTTACCGAAATG
1 GGCCGGTTTTTT-AATAATTTACCGAAATG
* *
12616299 GGCCGGTTTTTTAATTATTTACCGGAATG
1 GGCCGGTTTTTTAATAATTTACCGAAATG
12616328 GGCC
1 GGCC
12616332 ATTTACAGCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (29 bp):
GGCCGGTTTTTTAATAATTTACCGAAATG
Found at i:12617323 original size:29 final size:30
Alignment explanation
Indices: 12617246--12617308 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
12617236 CGCGAAAAAT
* *
12617246 GGCCCATTCCGGTAAATAATT--AAAAAACC
1 GGCCCATTTCGGTAAAT-TTTGAAAAAAACC
12617275 GGCCCATTTCGGTAAATTTTGAAAAAAACC
1 GGCCCATTTCGGTAAATTTTGAAAAAAACC
12617305 GGCC
1 GGCC
12617309 TTTTTTGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 2 0.07
29 16 0.53
30 12 0.40
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (30 bp):
GGCCCATTTCGGTAAATTTTGAAAAAAACC
Found at i:12617413 original size:29 final size:29
Alignment explanation
Indices: 12617369--12617434 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
12617359 GGTTTTTATG
*
12617369 AATAAAAATAATAGGTTAAGAGCTTATTTA
1 AATACAAA-AATAGGTTAAGAGCTTATTTA
* * * *
12617399 ACTACAAAAATAGGTTGAGGGCTTGTTTA
1 AATACAAAAATAGGTTAAGAGCTTATTTA
12617428 AATACAA
1 AATACAA
12617435 TGTAGTGAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 24 0.80
30 6 0.20
ACGTcount: A:0.45, C:0.08, G:0.17, T:0.30
Consensus pattern (29 bp):
AATACAAAAATAGGTTAAGAGCTTATTTA
Found at i:12620392 original size:30 final size:30
Alignment explanation
Indices: 12620330--12620393 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
12620320 TATTATATTT
*
12620330 AAATAAGTCTTTAAATTTTAATTAGTACTC
1 AAATAAGTCTTTAAATTTTAATTAGCACTC
* *
12620360 AAATAAGTTTTTAAATTTTAAGTTA-CATTC
1 AAATAAGTCTTTAAATTTTAA-TTAGCACTC
12620390 AAAT
1 AAAT
12620394 TATAAGTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (30 bp):
AAATAAGTCTTTAAATTTTAATTAGCACTC
Found at i:12633254 original size:18 final size:18
Alignment explanation
Indices: 12633233--12633292 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
12633223 AATGCAAAGA
12633233 TTAATAAAAATAAATAAT
1 TTAATAAAAATAAATAAT
*
12633251 TTAATAATATATAAA-AA-
1 TTAATAA-AAATAAATAAT
** *
12633268 TTGGTAAAAATCAATAAT
1 TTAATAAAAATAAATAAT
12633286 TTAATAA
1 TTAATAA
12633293 TTTATATGTT
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
16 5 0.16
17 7 0.22
18 14 0.44
19 6 0.19
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (18 bp):
TTAATAAAAATAAATAAT
Found at i:12636563 original size:3 final size:3
Alignment explanation
Indices: 12636555--12636586 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
12636545 GGAAAAGCCA
*
12636555 ATT ATT ATT ATT ATT ATT ATG ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
12636587 AAGAGTGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:12636692 original size:17 final size:16
Alignment explanation
Indices: 12636670--12636702 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
12636660 TTTTAGATTG
12636670 ATGTAAATATATGTTAA
1 ATGTAAATATAT-TTAA
12636687 ATGTAAATATATTTAA
1 ATGTAAATATATTTAA
12636703 TTTTTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (16 bp):
ATGTAAATATATTTAA
Found at i:12637038 original size:18 final size:18
Alignment explanation
Indices: 12637017--12637053 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
12637007 AATTAATGGC
12637017 TAAAGAAAGAATAATTTT
1 TAAAGAAAGAATAATTTT
12637035 TAAAGAAAGAATAATTTT
1 TAAAGAAAGAATAATTTT
12637053 T
1 T
12637054 TAGCTGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
TAAAGAAAGAATAATTTT
Found at i:12638249 original size:31 final size:31
Alignment explanation
Indices: 12638214--12638275 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
12638204 GCAATAAGAA
12638214 AGAACCAGTATATTGATTCATTGTGCTTACT
1 AGAACCAGTATATTGATTCATTGTGCTTACT
12638245 AGAACCAGTATATTGATTCATTGTGCTTACT
1 AGAACCAGTATATTGATTCATTGTGCTTACT
12638276 CAGAGGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (31 bp):
AGAACCAGTATATTGATTCATTGTGCTTACT
Found at i:12640205 original size:6 final size:6
Alignment explanation
Indices: 12640186--12640219 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
12640176 TGACATTTTT
*
12640186 AAATTA AAACTA AAATTA AAATTA AAATATA AAA
1 AAATTA AAATTA AAATTA AAATTA AAAT-TA AAA
12640220 AATTAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (6 bp):
AAATTA
Found at i:12640686 original size:9 final size:9
Alignment explanation
Indices: 12640670--12640712 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
12640660 GGTATTTTTC
12640670 GGTAATTCG
1 GGTAATTCG
*
12640679 GTTAATTCG
1 GGTAATTCG
*
12640688 GTTAATTCG
1 GGTAATTCG
12640697 GGTAATTCG
1 GGTAATTCG
12640706 GGTAATT
1 GGTAATT
12640713 TTTAACCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.23, C:0.09, G:0.28, T:0.40
Consensus pattern (9 bp):
GGTAATTCG
Found at i:12641498 original size:29 final size:29
Alignment explanation
Indices: 12641440--12641498 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
12641430 TGGGCAACAG
* * * *
12641440 AAAATAGTTTAGGTATCACTTGTGACAAA
1 AAAAAAGTTTAGGTATAACTAGGGACAAA
12641469 AAAAAAGTTTAGGTACTAACTAGGGA-AAA
1 AAAAAAGTTTAGGTA-TAACTAGGGACAAA
12641498 A
1 A
12641499 TGGTATAGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.25
Consensus pattern (29 bp):
AAAAAAGTTTAGGTATAACTAGGGACAAA
Found at i:12641737 original size:38 final size:37
Alignment explanation
Indices: 12641695--12641773 Score: 90
Period size: 37 Copynumber: 2.1 Consensus size: 37
12641685 GCCCAGCCCG
12641695 AATA-TAATAAATATA-TATTTTTATTTTTTTAATTTTAA
1 AATATTAATAAA-ATACT-TTTTTA-TTTTTTAATTTTAA
** *
12641733 AATATTTTTAAAATACTTTTTTATTTTTTATTTTTAA
1 AATATTAATAAAATACTTTTTTATTTTTTAATTTTAA
12641770 AATA
1 AATA
12641774 AATTTTTGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
37 17 0.47
38 13 0.36
39 6 0.17
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (37 bp):
AATATTAATAAAATACTTTTTTATTTTTTAATTTTAA
Found at i:12641788 original size:26 final size:26
Alignment explanation
Indices: 12641735--12641790 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
12641725 AATTTTAAAA
** * *
12641735 TATTTTTAAAATACTTTTTTATTTTT
1 TATTTTTAAAATAAATTTTTAGTGTT
*
12641761 TATTTTTAAAATAAATTTTTGGTGTT
1 TATTTTTAAAATAAATTTTTAGTGTT
12641787 TATT
1 TATT
12641791 AAAAAATGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (26 bp):
TATTTTTAAAATAAATTTTTAGTGTT
Found at i:12642671 original size:8 final size:8
Alignment explanation
Indices: 12642658--12642682 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
12642648 ATTGGACAAC
12642658 AAAATTTT
1 AAAATTTT
12642666 AAAATTTT
1 AAAATTTT
12642674 AAAATTTT
1 AAAATTTT
12642682 A
1 A
12642683 TAATATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AAAATTTT
Found at i:12644608 original size:11 final size:11
Alignment explanation
Indices: 12644592--12644621 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
12644582 ATTGACCCAT
12644592 ATACAGAAATC
1 ATACAGAAATC
12644603 ATACAGAAATC
1 ATACAGAAATC
12644614 ATACAGAA
1 ATACAGAA
12644622 CATGCTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.57, C:0.17, G:0.10, T:0.17
Consensus pattern (11 bp):
ATACAGAAATC
Found at i:12659640 original size:16 final size:15
Alignment explanation
Indices: 12659587--12659701 Score: 65
Period size: 15 Copynumber: 7.3 Consensus size: 15
12659577 CAATACTACT
* *
12659587 ATAATTAAAATAAAC
1 ATAATAAAAATAAAA
* *
12659602 ATAGA-AATAATAAGA
1 ATA-ATAAAAATAAAA
12659617 ATAATAAAAATAAAA
1 ATAATAAAAATAAAA
12659632 ATGAATAAAAATACTAAA
1 AT-AATAAAAATA--AAA
*
12659650 ACTAATAAGAATAAAA
1 A-TAATAAAAATAAAA
* *
12659666 TTACTAACTAGAATAAATA
1 ATAATAA--A-AATAAA-A
12659685 A-AAT-AAAATAAAA
1 ATAATAAAAATAAAA
12659698 ATAA
1 ATAA
12659702 ATCTAGGCAT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
13 2 0.03
14 9 0.12
15 28 0.36
16 14 0.18
17 1 0.01
18 21 0.27
19 2 0.03
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (15 bp):
ATAATAAAAATAAAA
Found at i:12659650 original size:24 final size:24
Alignment explanation
Indices: 12659597--12659672 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
12659587 ATAATTAAAA
* * *
12659597 TAAACATAGAAAT-AATAAGAATAA
1 TAAA-ATAAAAATGAATAAAAATAC
12659621 TAAAAATAAAAATGAATAAAAATAC
1 T-AAAATAAAAATGAATAAAAATAC
* *
12659646 TAAAACTAATAA-GAATAAAATTAC
1 TAAAA-TAAAAATGAATAAAAATAC
12659670 TAA
1 TAA
12659673 CTAGAATAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 26 0.59
25 18 0.41
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (24 bp):
TAAAATAAAAATGAATAAAAATAC
Found at i:12659737 original size:17 final size:17
Alignment explanation
Indices: 12659715--12659750 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
12659705 TAGGCATAAG
12659715 AATAAAATAAATAAATA
1 AATAAAATAAATAAATA
*
12659732 AATAAAATAACTAAATA
1 AATAAAATAAATAAATA
12659749 AA
1 AA
12659751 GAGGGAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (17 bp):
AATAAAATAAATAAATA
Found at i:12660031 original size:30 final size:31
Alignment explanation
Indices: 12659995--12660054 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
12659985 GCGTCGGAGG
12659995 AGGGAAAT-GAAAAGGTG-AAGGAAG-GGAGAA
1 AGGGAAATCG-AAAGG-GAAAGGAAGAGGAGAA
12660025 AGGGAAATCGAAAGGGAAAGGAAGAGGAGA
1 AGGGAAATCGAAAGGGAAAGGAAGAGGAGA
12660055 TGGGGAAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 1 0.04
30 20 0.74
31 6 0.22
ACGTcount: A:0.50, C:0.02, G:0.43, T:0.05
Consensus pattern (31 bp):
AGGGAAATCGAAAGGGAAAGGAAGAGGAGAA
Found at i:12660706 original size:12 final size:12
Alignment explanation
Indices: 12660679--12660721 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
12660669 TTATTTCAAA
12660679 AAAAG-AAAAAC
1 AAAAGAAAAAAC
12660690 AAAAGAAGAAAAC
1 AAAAGAA-AAAAC
*
12660703 -AAAGAAAAAAG
1 AAAAGAAAAAAC
12660714 AAAAGAAA
1 AAAAGAAA
12660722 TTGTGAACAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 9 0.32
12 14 0.50
13 5 0.18
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAC
Found at i:12663419 original size:31 final size:31
Alignment explanation
Indices: 12663381--12663439 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
12663371 TAAATAGTGA
**
12663381 AAACCATCATTGTTGGGCAATCCAGGGTGGT
1 AAACCATCATTGTAAGGCAATCCAGGGTGGT
*
12663412 AAACCATCATTGTAAGGCAATCCGGGGT
1 AAACCATCATTGTAAGGCAATCCAGGGT
12663440 CGTATGTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (31 bp):
AAACCATCATTGTAAGGCAATCCAGGGTGGT
Found at i:12676939 original size:16 final size:16
Alignment explanation
Indices: 12676918--12676985 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
12676908 TTTGGTTCGC
12676918 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
12676934 TGTATTTGATTAGAGA
1 TGTATTGGATTAGAGG
12676950 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
12676966 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
12676982 TGTA
1 TGTA
12676986 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:12677050 original size:44 final size:45
Alignment explanation
Indices: 12676966--12677056 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
12676956 GGATTAGAGG
* * *
12676966 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
12677011 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
12677055 TG
1 TG
12677057 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:12677342 original size:120 final size:120
Alignment explanation
Indices: 12677204--12677706 Score: 891
Period size: 120 Copynumber: 4.2 Consensus size: 120
12677194 ATCATATTTA
* * *
12677204 AACATAATTATTATTAAATATATTTTAATTAAAATATATGATACT-GTAAAATTCTTAATAATTA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAAT-TTAATAAAATTCTTAATAATTA
* *
12677268 ATATTCTTATATTAAATTACTGAAATCATAATATATGATACTGTAAAATATAAATT
65 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* * *
12677324 AACATAATTATTATTAAATATATTTTAATTAAAATATTTGATTTAATAAAATTATTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
12677389 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
12677444 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
12677509 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
12677564 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
12677629 TATTCTTATATTAATTTACTCAAATCATAATACATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
12677684 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
12677707 AACTTGAAAA
Statistics
Matches: 371, Mismatches: 11, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
119 1 0.00
120 370 1.00
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:12684262 original size:11 final size:11
Alignment explanation
Indices: 12684246--12684273 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
12684236 AATCGGGAGG
12684246 CGAAGGTAGAA
1 CGAAGGTAGAA
12684257 CGAAGGTAGAA
1 CGAAGGTAGAA
12684268 CGAAGG
1 CGAAGG
12684274 AAGATGCGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.39, T:0.07
Consensus pattern (11 bp):
CGAAGGTAGAA
Found at i:12685298 original size:27 final size:27
Alignment explanation
Indices: 12685259--12685352 Score: 143
Period size: 27 Copynumber: 3.5 Consensus size: 27
12685249 CTTGTCAGCT
* * *
12685259 TTTGTGGCATACTCTGAAAGAATCACC
1 TTTGTGGCATACTATGAATGAATCGCC
*
12685286 TTTGTGGCGTACTATGAATGAATCGCC
1 TTTGTGGCATACTATGAATGAATCGCC
*
12685313 TTTGTGGCGTACTATGAATGAATCGCC
1 TTTGTGGCATACTATGAATGAATCGCC
12685340 TTTGTGGCATACT
1 TTTGTGGCATACT
12685353 CTGTATAGAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (27 bp):
TTTGTGGCATACTATGAATGAATCGCC
Found at i:12697605 original size:68 final size:71
Alignment explanation
Indices: 12697510--12697646 Score: 172
Period size: 72 Copynumber: 2.0 Consensus size: 71
12697500 TTAATAGATA
* * * *
12697510 TAATATTAAATTTAGTTTAATACTTATCTT-T-AT-AGTATTTTGTTAATTTAATATTAAAGTGA
1 TAATATTAAATTTAATTTAATACTTATCTTGTAATAAATATTCTATTAATTTAATATTAAAGTGA
12697572 TTATCT
66 TTATCT
* ** *
12697578 TAATATTTAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTAATTTCATATTAAAGTG
1 TAATATTAAATTTAATTTAATACTTATCTTGTA-ATAAATATTCTATTAATTTAATATTAAAGTG
12697643 ATTA
65 ATTA
12697647 AGTTTAATCA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
68 26 0.46
69 1 0.02
71 2 0.04
72 28 0.49
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.52
Consensus pattern (71 bp):
TAATATTAAATTTAATTTAATACTTATCTTGTAATAAATATTCTATTAATTTAATATTAAAGTGA
TTATCT
Found at i:12698476 original size:21 final size:21
Alignment explanation
Indices: 12698450--12698501 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
12698440 CTGTTGTCAA
* * *
12698450 TGTCGCGATACAGGATGAGGG
1 TGTCGCGACACAGGATAAAGG
*
12698471 TGTCGCGACACAGGCTAAAGG
1 TGTCGCGACACAGGATAAAGG
12698492 TGTCGCGACA
1 TGTCGCGACA
12698502 TACCCTTGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.37, T:0.17
Consensus pattern (21 bp):
TGTCGCGACACAGGATAAAGG
Found at i:12704497 original size:43 final size:42
Alignment explanation
Indices: 12704397--12704539 Score: 112
Period size: 42 Copynumber: 3.4 Consensus size: 42
12704387 CTCGGTGGAT
* * * * *
12704397 TCAGCACTTAGCAACTA-CTTTAAATTCAGTGATTACGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAAGTCA-AGAATACAGGGAA
* * * * * *
12704439 TCAACACATAACAACC-TCTTTCACAGTCAAGGATAC-GGTGTAA
1 TCAGCACTTAGCAACCACCTTT-AAAGTCAAGAATACAGG-G-AA
* *
12704482 TCAGCACTTAGCAACCACCTTTAAAGTCAATAATTCAGGGAA
1 TCAGCACTTAGCAACCACCTTTAAAGTCAAGAATACAGGGAA
12704524 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
12704540 CCTCGAGAAA
Statistics
Matches: 78, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.03
42 39 0.50
43 31 0.40
44 6 0.08
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (42 bp):
TCAGCACTTAGCAACCACCTTTAAAGTCAAGAATACAGGGAA
Found at i:12719556 original size:85 final size:85
Alignment explanation
Indices: 12719443--12719613 Score: 245
Period size: 85 Copynumber: 2.0 Consensus size: 85
12719433 GATACTCCAT
** * *
12719443 ATACTTGTGTTGTTGCAAGTATGACACAAGATCATCTGAAATTGGATTCTGACCTTATCT-TTAA
1 ATACTTGTGTCATTGCAAGTATGACACAAGATCATCCGAAATTGGATTCTGACCTTATCTCTGAA
12719507 CATTGTCTTACCTATGGTGAA
66 -ATTGTCTTACCTATGGTGAA
* * * *
12719528 ATACTTGTGTCATTGTAGGTATGTCACAATATCATCCGAAATTGGATTCTGACCTTATCTCTGAA
1 ATACTTGTGTCATTGCAAGTATGACACAAGATCATCCGAAATTGGATTCTGACCTTATCTCTGAA
*
12719593 ATTGTCTTACTTATGGTGAA
66 ATTGTCTTACCTATGGTGAA
12719613 A
1 A
12719614 GTGAATCCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
85 73 0.96
86 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (85 bp):
ATACTTGTGTCATTGCAAGTATGACACAAGATCATCCGAAATTGGATTCTGACCTTATCTCTGAA
ATTGTCTTACCTATGGTGAA
Found at i:12721497 original size:18 final size:18
Alignment explanation
Indices: 12721470--12721520 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
12721460 TTTCAGCTAG
* * *
12721470 TCATCGCCATCTTCGTCT
1 TCATCTCCATCTCCATCT
12721488 TCATCTCCATCTCCATCT
1 TCATCTCCATCTCCATCT
* *
12721506 CCATCTCCACCTCCA
1 TCATCTCCATCTCCA
12721521 CTGCCACCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.16, C:0.47, G:0.04, T:0.33
Consensus pattern (18 bp):
TCATCTCCATCTCCATCT
Found at i:12721498 original size:6 final size:6
Alignment explanation
Indices: 12721489--12721520 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
12721479 TCTTCGTCTT
*
12721489 CATCTC CATCTC CATCTC CATCTC CACCTC CA
1 CATCTC CATCTC CATCTC CATCTC CATCTC CA
12721521 CTGCCACCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.53, G:0.00, T:0.28
Consensus pattern (6 bp):
CATCTC
Found at i:12726638 original size:20 final size:20
Alignment explanation
Indices: 12726613--12726651 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
12726603 TACTTTCTTC
12726613 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
12726633 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
12726652 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:12726996 original size:50 final size:50
Alignment explanation
Indices: 12726942--12727048 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 50
12726932 ACATGAGAGT
* * ** *
12726942 TCTCATATCGGTACCCATGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATATCAGTACCAACACCATGTCCCAGACATGGTCTTACGGGGAACC
* * *
12726992 TCTCATCTCAGTGCCAACACCATGTCCCAGACATGGTCTTACGTGGAACC
1 TCTCATATCAGTACCAACACCATGTCCCAGACATGGTCTTACGGGGAACC
12727042 TCTCATA
1 TCTCATA
12727049 ACCTCAATAA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (50 bp):
TCTCATATCAGTACCAACACCATGTCCCAGACATGGTCTTACGGGGAACC
Found at i:12734370 original size:20 final size:20
Alignment explanation
Indices: 12734345--12734383 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
12734335 TACTTTCTTC
12734345 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
12734365 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
12734384 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:12743222 original size:51 final size:51
Alignment explanation
Indices: 12743167--12743279 Score: 124
Period size: 51 Copynumber: 2.3 Consensus size: 51
12743157 AGAAATGATG
* * * *
12743167 AAATAGATAAATAGGAA-CATTTCAAAATGATTATGATTTTCTCCAAAATGA
1 AAATAGAGAAAT-GAAATCATTTCAAAATAAATATGATTTTCTCCAAAATGA
** * *
12743218 AAATAGAGAAATGAAATCATTTGGAAATAAATGTGGTTTTCTCCAAAATGA
1 AAATAGAGAAATGAAATCATTTCAAAATAAATATGATTTTCTCCAAAATGA
12743269 AAAT-GA-AAATG
1 AAATAGAGAAATG
12743280 GCCTGAAAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
49 5 0.09
50 5 0.09
51 43 0.81
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.29
Consensus pattern (51 bp):
AAATAGAGAAATGAAATCATTTCAAAATAAATATGATTTTCTCCAAAATGA
Found at i:12749036 original size:6 final size:6
Alignment explanation
Indices: 12749025--12749054 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
12749015 GATTTTCTCC
12749025 AAAATG AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG
12749055 GAGAAACGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:12762346 original size:11 final size:11
Alignment explanation
Indices: 12762332--12762388 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
12762322 ATATCCAAAT
12762332 AATAATAACAA
1 AATAATAACAA
*
12762343 AATATTAACAA
1 AATAATAACAA
*
12762354 TATAATAACAA
1 AATAATAACAA
* *
12762365 AATGATAGCAA
1 AATAATAACAA
* *
12762376 AACAACAACAA
1 AATAATAACAA
12762387 AA
1 AA
12762389 CAACTTATTC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.67, C:0.12, G:0.04, T:0.18
Consensus pattern (11 bp):
AATAATAACAA
Found at i:12764538 original size:19 final size:19
Alignment explanation
Indices: 12764514--12764575 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
12764504 AACCACATTC
12764514 ATTTTCAAATGTTTCCTAT
1 ATTTTCAAATGTTTCCTAT
*
12764533 ATTTTC--A---TTCCACATT
1 ATTTTCAAATGTTTCC-TA-T
12764549 CATTTTCAAATGTTTCCTAT
1 -ATTTTCAAATGTTTCCTAT
12764569 ATTTTCA
1 ATTTTCA
12764576 TTTTCATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
14 4 0.12
15 1 0.03
16 1 0.03
17 7 0.21
19 14 0.42
20 1 0.03
21 1 0.03
22 4 0.12
ACGTcount: A:0.26, C:0.19, G:0.03, T:0.52
Consensus pattern (19 bp):
ATTTTCAAATGTTTCCTAT
Found at i:12764549 original size:36 final size:36
Alignment explanation
Indices: 12764506--12764577 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
12764496 TGGGAGAAAA
12764506 CCACATTCATTTTCAAATGTTTCCTATATTTTCATT
1 CCACATTCATTTTCAAATGTTTCCTATATTTTCATT
12764542 CCACATTCATTTTCAAATGTTTCCTATATTTTCATT
1 CCACATTCATTTTCAAATGTTTCCTATATTTTCATT
12764578 TTCATTTAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.50
Consensus pattern (36 bp):
CCACATTCATTTTCAAATGTTTCCTATATTTTCATT
Found at i:12764600 original size:52 final size:52
Alignment explanation
Indices: 12764542--12764667 Score: 200
Period size: 52 Copynumber: 2.4 Consensus size: 52
12764532 TATTTTCATT
* *
12764542 CCACATTCATTTTCAAATGTTTCCTATATT-TTCATTTTCATTTAGGAGAAAA
1 CCACATTCATTTTCAAATGTTTCCTAT-TTCTCCATTTTCATTTAGGAAAAAA
*
12764594 CCACATTCATTTTCAAATGTTTCCTATTTCTCCATTTTCATTTTGGAAAAAA
1 CCACATTCATTTTCAAATGTTTCCTATTTCTCCATTTTCATTTAGGAAAAAA
*
12764646 CCACATCCATTTTCAAATGTTT
1 CCACATTCATTTTCAAATGTTT
12764668 TTCATTTCTT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 2 0.03
52 67 0.97
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (52 bp):
CCACATTCATTTTCAAATGTTTCCTATTTCTCCATTTTCATTTAGGAAAAAA
Found at i:12764675 original size:52 final size:51
Alignment explanation
Indices: 12764542--12764683 Score: 173
Period size: 52 Copynumber: 2.7 Consensus size: 51
12764532 TATTTTCATT
*
12764542 CCACATTCATTTTCAAATGTTTCCTAT-ATTT-TCATTTTCATTTAGGAGAAAA
1 CCACATTCATTTTCAAATGTTT--T-TCATTTCTCATTTTCATTTAGGAAAAAA
* *
12764594 CCACATTCATTTTCAAATG-TTTCCTATTTCTCCATTTTCATTTTGGAAAAAA
1 CCACATTCATTTTCAAATGTTTTTC-ATTTCT-CATTTTCATTTAGGAAAAAA
*
12764646 CCACATCCATTTTCAAATGTTTTTCATTTCTTCATTTT
1 CCACATTCATTTTCAAATGTTTTTCATTTC-TCATTTT
12764684 TACTATTTCT
Statistics
Matches: 79, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
49 1 0.01
50 4 0.05
51 3 0.04
52 66 0.84
53 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.46
Consensus pattern (51 bp):
CCACATTCATTTTCAAATGTTTTTCATTTCTCATTTTCATTTAGGAAAAAA
Found at i:12768887 original size:12 final size:12
Alignment explanation
Indices: 12768870--12768895 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12768860 CTATTAAGTC
12768870 TAGGTCAACAAT
1 TAGGTCAACAAT
12768882 TAGGTCAACAAT
1 TAGGTCAACAAT
12768894 TA
1 TA
12768896 TGGATGAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (12 bp):
TAGGTCAACAAT
Found at i:12776635 original size:33 final size:34
Alignment explanation
Indices: 12776557--12776641 Score: 97
Period size: 34 Copynumber: 2.5 Consensus size: 34
12776547 TGATAAATTT
*
12776557 AAAAATATATAAAAAT-AAAAAAATATTATTCACG
1 AAAAATA-ATAATAATAAAAAAAATATTATTCACG
*
12776591 AGAAATAATAATATATAAAAATAAATATT-TTCA-G
1 AAAAATAATAATA-ATAAAAA-AAATATTATTCACG
12776625 AAAAAT-ATAATAATAAA
1 AAAAATAATAATAATAAA
12776642 TTTAAATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
32 5 0.11
33 11 0.24
34 14 0.31
35 8 0.18
36 7 0.16
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (34 bp):
AAAAATAATAATAATAAAAAAAATATTATTCACG
Found at i:12786795 original size:25 final size:25
Alignment explanation
Indices: 12786761--12786808 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
12786751 TCGAACAAAT
12786761 CAAATAAAACACAGAACCAAAATCA
1 CAAATAAAACACAGAACCAAAATCA
*
12786786 CAAATCAAACACAGAACCAAAAT
1 CAAATAAAACACAGAACCAAAAT
12786809 ATTTTCTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.62, C:0.25, G:0.04, T:0.08
Consensus pattern (25 bp):
CAAATAAAACACAGAACCAAAATCA
Found at i:12804405 original size:25 final size:25
Alignment explanation
Indices: 12804357--12804405 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
12804347 GTTTTTTTAT
*
12804357 TATTTAATATTAACATAATTATTTC
1 TATTTAATATTAACATAATAATTTC
*
12804382 TATTTAAATATTAATATAA-AATTT
1 TATTT-AATATTAACATAATAATTT
12804406 AAATTTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTTAATATTAACATAATAATTTC
Found at i:12809198 original size:13 final size:13
Alignment explanation
Indices: 12809180--12809205 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12809170 ATTTTAACTG
12809180 TTTTCATTTCTAT
1 TTTTCATTTCTAT
12809193 TTTTCATTTCTAT
1 TTTTCATTTCTAT
12809206 AGATAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTCATTTCTAT
Found at i:12809581 original size:19 final size:19
Alignment explanation
Indices: 12809557--12809595 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
12809547 GCTATCATTG
12809557 GTAGATAAAAAAGAAAAAA
1 GTAGATAAAAAAGAAAAAA
12809576 GTAGATAAAAAAGAAAAAA
1 GTAGATAAAAAAGAAAAAA
12809595 G
1 G
12809596 AAGTGTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.10
Consensus pattern (19 bp):
GTAGATAAAAAAGAAAAAA
Found at i:12817535 original size:43 final size:43
Alignment explanation
Indices: 12817468--12817592 Score: 116
Period size: 41 Copynumber: 3.0 Consensus size: 43
12817458 GGCTCGTACA
* *
12817468 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTGAACACATATCG
1 ATGCCAATGTCTCAGACAG-GGTCTTACATGTGAACACATATCG
** *
12817511 ATGCCCCTGTC-CTAGACAGGGTCTTACA--TGAATCAAATA-CG
1 ATGCCAATGTCTC-AGACAGGGTCTTACATGTGAA-CACATATCG
** *
12817552 ATGCCAATGTCTCAGACATAGTCTTACATGTAAACACATAT
1 ATGCCAATGTCTCAGACAGGGTCTTACATGTGAACACATAT
12817593 AAAAAATCCT
Statistics
Matches: 65, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
41 28 0.43
42 12 0.18
43 24 0.37
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCTCAGACAGGGTCTTACATGTGAACACATATCG
Found at i:12830417 original size:24 final size:24
Alignment explanation
Indices: 12830386--12830433 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
12830376 CTCATAGGAG
* *
12830386 CTATGAATCGGTATGCTCACACAA
1 CTATGAATCGATAAGCTCACACAA
*
12830410 CTATGAATCGATAAGCTCATACAA
1 CTATGAATCGATAAGCTCACACAA
12830434 GCTGTGGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (24 bp):
CTATGAATCGATAAGCTCACACAA
Found at i:12831310 original size:4 final size:5
Alignment explanation
Indices: 12831283--12831307 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
12831273 ATGATGATAA
12831283 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
12831308 ATTATAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:12838352 original size:3 final size:3
Alignment explanation
Indices: 12838344--12838390 Score: 60
Period size: 3 Copynumber: 15.3 Consensus size: 3
12838334 AATAGAAACA
*
12838344 AAC AAC AAC AAC AAA AAC AAC AAC AAC AAC AAC AGAGC AAC AA- AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC A-A-C AAC AAC AAC
12838390 A
1 A
12838391 GTGACAGGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 33 0.85
4 2 0.05
5 2 0.05
ACGTcount: A:0.68, C:0.28, G:0.04, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:12843818 original size:51 final size:50
Alignment explanation
Indices: 12843763--12843910 Score: 120
Period size: 42 Copynumber: 3.1 Consensus size: 50
12843753 TTAATAATAA
12843763 ATTTATAACTTAAATAGGTATTACTATTTTTTTAATATTATACATATATTC
1 ATTTATAACTTAAATA-GTATTACTATTTTTTTAATATTATACATATATTC
* * * * **
12843814 A-TT-T-ACGT--AT-GTA--AGCTA-TATTTAAATTTTACTA-ATA-ATAA
1 ATTTATAACTTAAATAGTATTA-CTATTTTTTTAATATTA-TACATATATTC
*
12843855 ATTTATAACTTAAATAAGTATTAGTATTTTTTTAATATTATACATATATTC
1 ATTTATAACTTAAAT-AGTATTACTATTTTTTTAATATTATACATATATTC
12843906 ATTTA
1 ATTTA
12843911 CATAACACAT
Statistics
Matches: 70, Mismatches: 13, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
41 3 0.04
42 16 0.23
43 6 0.09
44 6 0.09
46 4 0.06
48 6 0.09
49 5 0.07
50 16 0.23
51 8 0.11
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (50 bp):
ATTTATAACTTAAATAGTATTACTATTTTTTTAATATTATACATATATTC
Found at i:12843876 original size:92 final size:92
Alignment explanation
Indices: 12843718--12843911 Score: 361
Period size: 92 Copynumber: 2.1 Consensus size: 92
12843708 GTTTAAAAGC
* *
12843718 ATTCATTTACGTATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAGGTA
1 ATTCATTTACGTATGTAAGCTATATTTAAATTTTACTAATAATAAATTTATAACTTAAATAAGTA
12843783 TTACTATTTTTTTAATATTATACATAT
66 TTACTATTTTTTTAATATTATACATAT
12843810 ATTCATTTACGTATGTAAGCTATATTTAAATTTTACTAATAATAAATTTATAACTTAAATAAGTA
1 ATTCATTTACGTATGTAAGCTATATTTAAATTTTACTAATAATAAATTTATAACTTAAATAAGTA
*
12843875 TTAGTATTTTTTTAATATTATACATAT
66 TTACTATTTTTTTAATATTATACATAT
12843902 ATTCATTTAC
1 ATTCATTTAC
12843912 ATAACACATA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 99 1.00
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.48
Consensus pattern (92 bp):
ATTCATTTACGTATGTAAGCTATATTTAAATTTTACTAATAATAAATTTATAACTTAAATAAGTA
TTACTATTTTTTTAATATTATACATAT
Found at i:12843931 original size:9 final size:9
Alignment explanation
Indices: 12843908--12844301 Score: 138
Period size: 9 Copynumber: 45.9 Consensus size: 9
12843898 ATATATTCAT
12843908 TTACATAAC
1 TTACATAAC
12843917 --ACATAAC
1 TTACATAAC
12843924 TTACATAAC
1 TTACATAAC
* *
12843933 CTACTTAA-
1 TTACATAAC
*
12843941 -TATATAAC
1 TTACATAAC
*
12843949 TTGCATAAC
1 TTACATAAC
* *
12843958 TTAAATAAG
1 TTACATAAC
*
12843967 TTACGTAA-
1 TTACATAAC
12843975 TAATACATAA-
1 T--TACATAAC
*
12843985 -TACACAAC
1 TTACATAAC
*
12843993 TTACAT-GC
1 TTACATAAC
* *
12844001 GTAAATAA-
1 TTACATAAC
* *
12844009 -TACAGAGC
1 TTACATAAC
12844017 TTACATAAC
1 TTACATAAC
*
12844026 TTACATACC
1 TTACATAAC
* *
12844035 CTACATAAA
1 TTACATAAC
* *
12844044 TTAAATAAG
1 TTACATAAC
12844053 TTACATAA-
1 TTACATAAC
*
12844061 TAATACATACC
1 T--TACATAAC
* *
12844072 CTACATAAA
1 TTACATAAC
* *
12844081 TTAAATAAG
1 TTACATAAC
*
12844090 TTACATAAA
1 TTACATAAC
* *
12844099 TTAAATAAG
1 TTACATAAC
12844108 TTACATAA-
1 TTACATAAC
*
12844116 TAATACATACC
1 T--TACATAAC
*
12844127 CTACATAAC
1 TTACATAAC
12844136 TTACATAA-
1 TTACATAAC
*
12844144 -GACATAAC
1 TTACATAAC
*
12844152 TTTCATAA-
1 TTACATAAC
*
12844160 -TACACAAC
1 TTACATAAC
**
12844168 TTACGCAAC
1 TTACATAAC
12844177 TTACATAA-
1 TTACATAAC
*
12844185 -GACATAAC
1 TTACATAAC
*
12844193 TTACAT--G
1 TTACATAAC
*
12844200 TGTAAATAA-
1 T-TACATAAC
**
12844209 -TACATATT
1 TTACATAAC
12844217 TTACATAAC
1 TTACATAAC
12844226 TTACATAA-
1 TTACATAAC
*
12844234 -GACATAAC
1 TTACATAAC
*
12844242 TTACATAAG
1 TTACATAAC
*
12844251 TTTCATAA-
1 TTACATAAC
* *
12844259 -TACACATC
1 TTACATAAC
**
12844267 TTACGCAAC
1 TTACATAAC
12844276 TTACATAAC
1 TTACATAAC
12844285 TTACATAAC
1 TTACATAAC
12844294 TTACATAA
1 TTACATAA
12844302 TGTATATCTT
Statistics
Matches: 279, Mismatches: 74, Indels: 64
0.67 0.18 0.15
Matches are distributed among these distances:
7 55 0.20
8 12 0.04
9 194 0.70
10 18 0.06
ACGTcount: A:0.46, C:0.19, G:0.05, T:0.30
Consensus pattern (9 bp):
TTACATAAC
Found at i:12843942 original size:92 final size:91
Alignment explanation
Indices: 12843718--12843967 Score: 249
Period size: 92 Copynumber: 2.7 Consensus size: 91
12843708 GTTTAAAAGC
* * *** *
12843718 ATTCATTTACGTATGTAAGCTATATTTAAATTTTA-TTAATAATAAATTTATAACTTAAATAGGT
1 ATTCATTTACG-A-GTAAACTATACTTAAAACCTACTTAATAATAAATTTATAACTTAAATAAGT
12843782 ATTACTATTTTTTTAATATTATACATAT
64 ATTACTATTTTTTTAATATTATACATAT
* * ***
12843810 ATTCATTTACGTATGTAAGCTATATTTAAATTTTAC-TAATAATAAATTTATAACTTAAATAAGT
1 ATTCATTTACG-A-GTAAACTATACTTAAAACCTACTTAATAATAAATTTATAACTTAAATAAGT
*
12843874 ATTAGTATTTTTTTAATATTATACATAT
64 ATTACTATTTTTTTAATATTATACATAT
* *
12843902 ATTCATTTAC-A-TAACAC-ATAACTTACATAACCTACTTAATATATAACTTGCATAACTTAAAT
1 ATTCATTTACGAGTAA-ACTAT-ACTTA-A-AACCTACTTAATA-ATAAATT-TATAACTTAAAT
12843964 AAGT
60 AAGT
12843968 TACGTAATAA
Statistics
Matches: 141, Mismatches: 9, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
88 5 0.04
89 5 0.04
90 2 0.01
91 4 0.03
92 104 0.74
93 6 0.04
94 15 0.11
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.45
Consensus pattern (91 bp):
ATTCATTTACGAGTAAACTATACTTAAAACCTACTTAATAATAAATTTATAACTTAAATAAGTAT
TACTATTTTTTTAATATTATACATAT
Found at i:12844071 original size:37 final size:37
Alignment explanation
Indices: 12844027--12844097 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
12844017 TTACATAACT
12844027 TACATACCCTACATAAATTAAATAAGTTACATAATAA
1 TACATACCCTACATAAATTAAATAAGTTACATAATAA
12844064 TACATACCCTACATAAATTAAATAAGTTACATAA
1 TACATACCCTACATAAATTAAATAAGTTACATAA
12844098 ATTAAATAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.30
Consensus pattern (37 bp):
TACATACCCTACATAAATTAAATAAGTTACATAATAA
Found at i:12844144 original size:55 final size:55
Alignment explanation
Indices: 12844004--12844144 Score: 210
Period size: 55 Copynumber: 2.6 Consensus size: 55
12843994 TACATGCGTA
* * * **
12844004 AATAATACAGAGCTTACATAACTTACATACCCTACATAAATTAAATAAGTTACAT
1 AATAATACATACCCTACATAACTTACATAAGCTACATAAATTAAATAAGTTACAT
* * *
12844059 AATAATACATACCCTACATAAATTAAATAAGTTACATAAATTAAATAAGTTACAT
1 AATAATACATACCCTACATAACTTACATAAGCTACATAAATTAAATAAGTTACAT
12844114 AATAATACATACCCTACATAACTTACATAAG
1 AATAATACATACCCTACATAACTTACATAAG
12844145 ACATAACTTT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 76 1.00
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.29
Consensus pattern (55 bp):
AATAATACATACCCTACATAACTTACATAAGCTACATAAATTAAATAAGTTACAT
Found at i:12844148 original size:16 final size:16
Alignment explanation
Indices: 12844129--12844250 Score: 82
Period size: 16 Copynumber: 8.0 Consensus size: 16
12844119 TACATACCCT
12844129 ACATAACTTACATAAG
1 ACATAACTTACATAAG
* *
12844145 ACATAACTTTCATAAT
1 ACATAACTTACATAAG
*
12844161 ACACAACTTAC----G
1 ACATAACTTACATAAG
12844173 -C--AACTTACATAAG
1 ACATAACTTACATAAG
**
12844186 ACATAACTTACATGTG
1 ACATAACTTACATAAG
* **
12844202 TAAATAA--TACATATTTT
1 -ACATAACTTACATA--AG
12844219 ACATAACTTACATAAG
1 ACATAACTTACATAAG
12844235 ACATAACTTACATAAG
1 ACATAACTTACATAAG
12844251 TTTCATAATA
Statistics
Matches: 81, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
9 7 0.09
11 1 0.01
13 1 0.01
14 1 0.01
15 5 0.06
16 54 0.67
17 6 0.07
18 6 0.07
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.30
Consensus pattern (16 bp):
ACATAACTTACATAAG
Found at i:12844177 original size:25 final size:25
Alignment explanation
Indices: 12844149--12844283 Score: 76
Period size: 25 Copynumber: 5.4 Consensus size: 25
12844139 CATAAGACAT
* *
12844149 AACTTTCATAATACACAACTTACGC
1 AACTTACATAAGACACAACTTACGC
*
12844174 AACTTACATAAGACATAACTTA--C
1 AACTTACATAAGACACAACTTACGC
** * * * ** **
12844197 ATGTGTAAATAATACATATTTTACAT
1 AACT-TACATAAGACACAACTTACGC
* **
12844223 AACTTACATAAGACATAACTTACAT
1 AACTTACATAAGACACAACTTACGC
* * * *
12844248 AAGTTTCATAATACACATCTTACGC
1 AACTTACATAAGACACAACTTACGC
12844273 AACTTACATAA
1 AACTTACATAA
12844284 CTTACATAAC
Statistics
Matches: 82, Mismatches: 25, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
23 3 0.04
24 14 0.17
25 63 0.77
26 2 0.02
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (25 bp):
AACTTACATAAGACACAACTTACGC
Found at i:12849832 original size:66 final size:65
Alignment explanation
Indices: 12849725--12849880 Score: 197
Period size: 66 Copynumber: 2.4 Consensus size: 65
12849715 GAGCAAATTA
* * * *
12849725 CACAACTTAAAGCAGAGGCAACATCGAAAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAAAGAAACTGAGGTTCAACAAAAG-TATGAAGAACTCCA
12849789 G
65 G
* * *
12849790 CTACAACTGAAAGCAGATGCAGCAGCGAGAGAAACTGAGGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAAAGAAACTGAGGTTCAACAAAAGTATGAAGAACTCCA
12849855 G
65 G
* *
12849856 CAGCAGCTTAAAGCAGATGCGGCAG
1 CA-CAACTTAAAGCAGATGCAGCAG
12849881 TAAGAGAAGC
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.03
66 72 0.92
67 4 0.05
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAAAGAAACTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:12849890 original size:21 final size:21
Alignment explanation
Indices: 12849866--12849953 Score: 86
Period size: 21 Copynumber: 4.2 Consensus size: 21
12849856 CAGCAGCTTA
* *
12849866 AAGCAGATGCGGCAGTAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
*
12849887 AAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* * * *
12849908 AAGTACAGGCTGCAGCAAGGG
1 AAGCAGAGGCGGCAGCAAGAG
* * *
12849929 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
12849950 AAGC
1 AAGC
12849954 CGAACAGCGT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.34, C:0.18, G:0.42, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGAG
Found at i:12850356 original size:43 final size:43
Alignment explanation
Indices: 12850309--12850566 Score: 266
Period size: 43 Copynumber: 6.0 Consensus size: 43
12850299 AGGTGTTGGC
* * *
12850309 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGT
1 CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCAGGGT
** * *
12850352 CTTTAGCGGCGTTTGTGGAAAAAGCGCCACTAAAGATCATGGT
1 CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCAGGGT
** * *
12850395 CTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTT
1 CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCAGGGT
* * * *
12850438 CTTTAGTGGCGTTTTGTTGTCGAAGCGCCGCTATAGATCAGGGT
1 CTTTAGCGGCG-TTTGTGGTCAAAGCGCCGCTAAAGATCAGGGT
* ** * *
12850482 CTATT-GCGGCGTTTGAGGGGAAAGCGCCGCTAAAGATTAGGTT
1 CT-TTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCAGGGT
* * * * *
12850525 CTTTCGTGGCGTTTGTGGTCAAAGTGCTGCTATAGATCAGGG
1 CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCAGGG
12850567 CCTAAAAAAG
Statistics
Matches: 173, Mismatches: 39, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
42 2 0.01
43 137 0.79
44 32 0.18
45 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATCAGGGT
Found at i:12850419 original size:86 final size:86
Alignment explanation
Indices: 12850284--12850542 Score: 304
Period size: 87 Copynumber: 3.0 Consensus size: 86
12850274 GGCGTTTTTA
* * ** * * * ** *
12850284 AAAAAACGCCACTAAAGGTGTTGGCCTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAG
1 AAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAG
* *
12850349 GGTCTTTAGCGGCGTTTGTGG
66 GTTCTTTAGTGGCGTTTGTGG
12850370 AAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAG
1 AAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAG
*
12850435 GTTCTTTAGTGGCGTTTTGTTG
66 GTTCTTTAGTGGCG-TTTGTGG
*** * * * *
12850457 TCGAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGGGGAAAGCGCCGCTAAAGATTA
1 AAAAAGCGCCACTAAAGATCATGGTCT-TTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTA
*
12850521 GGTTCTTTCGTGGCGTTTGTGG
65 GGTTCTTTAGTGGCGTTTGTGG
12850543 TCAAAGTGCT
Statistics
Matches: 149, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
86 73 0.49
87 74 0.50
88 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (86 bp):
AAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAG
GTTCTTTAGTGGCGTTTGTGG
Found at i:12850491 original size:130 final size:129
Alignment explanation
Indices: 12850309--12850542 Score: 328
Period size: 130 Copynumber: 1.8 Consensus size: 129
12850299 AGGTGTTGGC
*
12850309 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGAGGAAAA
12850374 AGCGCCACTAAAGATCATGG-TCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTT
66 AGCGCCACTAAAGATCA-GGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTT
* * * * **
12850438 CTTTAGTGGCGTTTTGTTGTCGAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGGGG
1 CTTTAGTGGCGTTTT-TGGTCAAAGCGCCGCTAAAGATAAGGGTCT-TTAGCGGCGTTTGAGGAA
* * * *
12850502 AAAGCGCCGCTAAAGATTAGGTTCTTTCGTGGCGTTTGTGG
64 AAAGCGCCACTAAAGATCAGGTTCTTTAGCGGCGTTTGTGG
12850543 TCAAAGTGCT
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
129 17 0.19
130 72 0.79
131 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (129 bp):
CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGAGGAAAA
AGCGCCACTAAAGATCAGGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTT
Found at i:12850494 original size:87 final size:86
Alignment explanation
Indices: 12850329--12850566 Score: 325
Period size: 87 Copynumber: 2.8 Consensus size: 86
12850319 GTTTTTGGTC
* * * ** * * *
12850329 AAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGGAAAAAGCGCCACTAAAGATCATGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGG
*
12850394 TCTTTAGCGGCGTTTGTGGGG
66 TCTTTAGCGGCGTTTGAGGGG
* *
12850415 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTTGTTGTCGAAGCGCCGCTATAGATCAGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCG-TTTGTGGTCAAAGCGCCGCTATAGATCAGG
12850480 GTCTATT-GCGGCGTTTGAGGGG
65 GTCT-TTAGCGGCGTTTGAGGGG
* * *
12850502 AAAGCGCCGCTAAAGATTAGGTTCTTTCGTGGCGTTTGTGGTCAAAGTGCTGCTATAGATCAGGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGG
12850567 CCTAAAAAAG
Statistics
Matches: 134, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
86 58 0.43
87 74 0.55
88 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (86 bp):
AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGG
TCTTTAGCGGCGTTTGAGGGG
Found at i:12857399 original size:51 final size:48
Alignment explanation
Indices: 12857338--12857498 Score: 195
Period size: 51 Copynumber: 3.3 Consensus size: 48
12857328 ACTTCTGATC
* * * *
12857338 AGTGATAAGTGATAATTGGTTGCTTTAACTACACTTATCTGATCAGTGGCA
1 AGTGACAAGTGATAA-T-G-TGCTTCAGCTACACTTATCTGATCAGTGACA
12857389 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAA-TG-T-GCTTCAGCTACACTTATCTGATCAGTGACA
*
12857440 AGTGATAAGTGAT-A---GCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAATGTGCTTCAGCTACACTTATCTGATCAGTGACA
12857484 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
12857499 GAGATAAGTG
Statistics
Matches: 100, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
44 42 0.42
45 1 0.01
50 3 0.03
51 54 0.54
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (48 bp):
AGTGACAAGTGATAATGTGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:12857452 original size:44 final size:44
Alignment explanation
Indices: 12857389--12857497 Score: 209
Period size: 44 Copynumber: 2.5 Consensus size: 44
12857379 ATCAGTGGCA
12857389 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATC
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATC
12857433 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATC
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATC
*
12857477 AGTGACAAGTGACAAGTGATA
1 AGTGACAAGTGATAAGTGATA
12857498 AGAGATAAGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (44 bp):
AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATC
Found at i:12857494 original size:95 final size:95
Alignment explanation
Indices: 12857331--12857504 Score: 276
Period size: 95 Copynumber: 1.8 Consensus size: 95
12857321 TTTGAGTACT
* * * * * *
12857331 TCTGATCAGTGATAAGTGATAATTGGTTGCTTTAACTACACTTATCTGATCAGTGGCAAGTGACA
1 TCTGATCAGTGACAAGTGATAAGTGATAGCTTCAACTACACTTATCTGATCAGTGACAAGTGACA
*
12857396 AGTGATAAGTGATAGCTTCAGCTACACTTA
66 AGTGATAAGAGATAGCTTCAGCTACACTTA
*
12857426 TCTGATCAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGACA
1 TCTGATCAGTGACAAGTGATAAGTGATAGCTTCAACTACACTTATCTGATCAGTGACAAGTGACA
12857491 AGTGATAAGAGATA
66 AGTGATAAGAGATA
12857505 AGTGGTAGCA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
95 71 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (95 bp):
TCTGATCAGTGACAAGTGATAAGTGATAGCTTCAACTACACTTATCTGATCAGTGACAAGTGACA
AGTGATAAGAGATAGCTTCAGCTACACTTA
Found at i:12857507 original size:58 final size:57
Alignment explanation
Indices: 12857433--12857604 Score: 196
Period size: 58 Copynumber: 3.1 Consensus size: 57
12857423 TTATCTGATC
* * *
12857433 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAGTGATAAGTGACA
* * *
12857491 AGTGATAAGAGATAAGTGGTAGCATTAACTACACTTATCTAATCAGTGATAA-T--C-
1 AGTGATAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGATAAGTGACA
* * *
12857545 -G-G-TAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATTAGGGATAAGTGATA
1 AGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGATAAGTGACA
12857599 AGTGAT
1 AGTGAT
12857605 CATACGTTAG
Statistics
Matches: 94, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
50 24 0.26
51 18 0.19
52 1 0.01
53 1 0.01
55 2 0.02
56 1 0.01
57 2 0.02
58 43 0.46
59 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (57 bp):
AGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGATAAGTGACA
Found at i:12857592 original size:50 final size:51
Alignment explanation
Indices: 12857496--12857592 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 51
12857486 TGACAAGTGA
*
12857496 TAAGAGATAAGTGGTAGCATTAACTACACTTATCTAATCAGTGATAATCGG
1 TAAGAGATAAGTGGTAGCATTAACTACACTTATCTAATCAGGGATAATCGG
* * * *
12857547 TAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATTAGGGATAA
1 TAAGAGATAAGTGGTAGCATTAACTACACTTATCTAATCAGGGATAA
12857593 GTGATAAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 24 0.59
51 17 0.41
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (51 bp):
TAAGAGATAAGTGGTAGCATTAACTACACTTATCTAATCAGGGATAATCGG
Found at i:12863534 original size:14 final size:14
Alignment explanation
Indices: 12863515--12863578 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
12863505 TTGACCAAGT
12863515 ATAAATTATTAATA
1 ATAAATTATTAATA
12863529 ATAAA-TATTATATA
1 ATAAATTATTA-ATA
12863543 ATTAAATTAACTTTAAT-
1 A-TAAATT-A--TTAATA
* *
12863560 ATAAATAATTTATA
1 ATAAATTATTAATA
12863574 ATAAA
1 ATAAA
12863579 AACTATAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 14
0.72 0.04 0.25
Matches are distributed among these distances:
13 9 0.22
14 14 0.34
15 5 0.12
16 6 0.15
17 2 0.05
18 2 0.05
19 3 0.07
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATTATTAATA
Found at i:12867732 original size:125 final size:125
Alignment explanation
Indices: 12867510--12867951 Score: 686
Period size: 125 Copynumber: 3.5 Consensus size: 125
12867500 GATAAAATCA
* * * *
12867510 AAGCAGGATACTTTATTAGAAGAATTTCTGAAATCGCGCCCATGTTGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
**
12867575 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAATGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACACTTC
* * * *
12867635 AAGCAGGATGTTTTATCAGAAGAATTTCTGAAATTGTGCCCATGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
12867700 AGGTCTTGAAAAAATAATTTCGAGTTGACGTTTCTGAGTGAATAGTATAAAAAACACTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACACTTC
* *
12867760 AAACAGGATGCTTTATCAGAAGAATTTCTGAAATCGTGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
12867825 AGGTCCTAAAAAAATAATTTTGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACACTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACACTTC
* * * * * *
12867885 AAGCAGGATGCTTTATTAGAAGAATTTCTTAAATCGCACCCACATGGACGCACTTTTGCTATAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
12867950 AG
66 AG
12867952 CATGTTTAGG
Statistics
Matches: 291, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 291 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACACTTC
Found at i:12870076 original size:21 final size:21
Alignment explanation
Indices: 12870029--12870081 Score: 88
Period size: 22 Copynumber: 2.5 Consensus size: 21
12870019 CTCTATCTGT
12870029 GTTAGGGTTTTTAAGTTAAGG
1 GTTAGGGTTTTTAAGTTAAGG
*
12870050 GCTTAGGGTTTTTAAGTTTAGG
1 G-TTAGGGTTTTTAAGTTAAGG
12870072 GTTAGGGTTT
1 GTTAGGGTTT
12870082 AGGGTTTATG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 10 0.33
22 20 0.67
ACGTcount: A:0.19, C:0.02, G:0.34, T:0.45
Consensus pattern (21 bp):
GTTAGGGTTTTTAAGTTAAGG
Found at i:12870126 original size:7 final size:7
Alignment explanation
Indices: 12870114--12870153 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
12870104 GTTTGTCAAT
12870114 TAAATTA
1 TAAATTA
12870121 TAAATT-
1 TAAATTA
12870127 T-AATTA
1 TAAATTA
12870133 TAAATTA
1 TAAATTA
12870140 TAAATTTA
1 TAAA-TTA
12870148 TAAATT
1 TAAATT
12870154 TTTAATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 4 0.13
6 2 0.07
7 17 0.57
8 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TAAATTA
Found at i:12870126 original size:12 final size:12
Alignment explanation
Indices: 12870111--12870153 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
12870101 AAGGTTTGTC
12870111 AATTAAATTATA
1 AATTAAATTATA
*
12870123 AATTTAATTATA
1 AATTAAATTATA
12870135 AATTATAAATTTATA
1 AA-T-TAAA-TTATA
12870150 AATT
1 AATT
12870154 TTTAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 13 0.50
13 2 0.08
14 4 0.15
15 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AATTAAATTATA
Found at i:12870199 original size:22 final size:21
Alignment explanation
Indices: 12870168--12870240 Score: 92
Period size: 21 Copynumber: 3.4 Consensus size: 21
12870158 ATAAATTAGG
12870168 TTAGGGTTTTTAAGTTAAGGA
1 TTAGGGTTTTTAAGTTAAGGA
*
12870189 TTAGGGTTTTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAA-GGA
* * * *
12870211 TTATGATTTTTAAGTTTAGGG
1 TTAGGGTTTTTAAGTTAAGGA
12870232 TTAGGGTTT
1 TTAGGGTTT
12870241 AAGGTTTAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 27 0.61
22 17 0.39
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGA
Found at i:12870285 original size:7 final size:7
Alignment explanation
Indices: 12870273--12870312 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
12870263 GTTTGTCAAT
12870273 TAAATTA
1 TAAATTA
12870280 TAAATT-
1 TAAATTA
12870286 T-AATTA
1 TAAATTA
12870292 TAAATTA
1 TAAATTA
12870299 TAAATTTA
1 TAAA-TTA
12870307 TAAATT
1 TAAATT
12870313 TTTAATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 4 0.13
6 2 0.07
7 17 0.57
8 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TAAATTA
Found at i:12870285 original size:12 final size:12
Alignment explanation
Indices: 12870270--12870312 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
12870260 AGGGTTTGTC
12870270 AATTAAATTATA
1 AATTAAATTATA
*
12870282 AATTTAATTATA
1 AATTAAATTATA
12870294 AATTATAAATTTATA
1 AA-T-TAAA-TTATA
12870309 AATT
1 AATT
12870313 TTTAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 13 0.50
13 2 0.08
14 4 0.15
15 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AATTAAATTATA
Found at i:12870319 original size:159 final size:159
Alignment explanation
Indices: 12870030--12870341 Score: 570
Period size: 159 Copynumber: 2.0 Consensus size: 159
12870020 TCTATCTGTG
* * *
12870030 TTAGGGTTTTTAAGTTAAGGGCTTAGGGTTTTTAAGTTTAGGGTTAGGGTTTAGGGTTTATGGTT
1 TTAGGGTTTTTAAGTTAAGGGCTTAGGATTTTTAAGTTTAGGGTTAGGGTTTAAGGTTTAAGGTT
12870095 TTTGTTAAGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATAAATTTATAAATTTTTAAT
66 TTTGTTAAGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATAAATTTATAAATTTTTAAT
12870160 AAATTAGGTTAGGGTTTTTAAGTTAAGGA
131 AAATTAGGTTAGGGTTTTTAAGTTAAGGA
* *
12870189 TTAGGGTTTTTAAGTTAAGGGTTTATGATTTTTAAGTTTAGGGTTAGGGTTTAAGGTTTAAGGTT
1 TTAGGGTTTTTAAGTTAAGGGCTTAGGATTTTTAAGTTTAGGGTTAGGGTTTAAGGTTTAAGGTT
*
12870254 TTTGTTAGGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATAAATTTATAAATTTTTAAT
66 TTTGTTAAGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATAAATTTATAAATTTTTAAT
12870319 AAATTAGGTTAGGGTTTTTAAGT
131 AAATTAGGTTAGGGTTTTTAAGT
12870342 AATAACTCAA
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
159 147 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (159 bp):
TTAGGGTTTTTAAGTTAAGGGCTTAGGATTTTTAAGTTTAGGGTTAGGGTTTAAGGTTTAAGGTT
TTTGTTAAGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATAAATTTATAAATTTTTAAT
AAATTAGGTTAGGGTTTTTAAGTTAAGGA
Found at i:12871504 original size:7 final size:7
Alignment explanation
Indices: 12871494--12871519 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12871484 TTATATACAT
12871494 AATACTA
1 AATACTA
12871501 AATACTA
1 AATACTA
12871508 AATACTA
1 AATACTA
12871515 AATAC
1 AATAC
12871520 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:12872706 original size:22 final size:22
Alignment explanation
Indices: 12872681--12872776 Score: 72
Period size: 22 Copynumber: 4.4 Consensus size: 22
12872671 TAGGGATTTA
*
12872681 AGAGAAATTTAGGAGAAAATTG
1 AGAGAAATTTAGGAGGAAATTG
* ** * *
12872703 AGAGCAAATTAAATATGAATTTG
1 AGAG-AAATTTAGGAGGAAATTG
*
12872726 AGAGAAATTT-GGAAGGAAATTT
1 AGAGAAATTTAGG-AGGAAATTG
*
12872748 AGAGCAAATTGA-GAGGAAATTG
1 AGAG-AAATTTAGGAGGAAATTG
12872770 AGA-AAAT
1 AGAGAAAT
12872777 AATTGAGAGA
Statistics
Matches: 56, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
20 4 0.07
22 30 0.54
23 22 0.39
ACGTcount: A:0.49, C:0.02, G:0.25, T:0.24
Consensus pattern (22 bp):
AGAGAAATTTAGGAGGAAATTG
Found at i:12872717 original size:45 final size:45
Alignment explanation
Indices: 12872668--12872757 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
12872658 AAATAATTAA
*
12872668 AAATAGGGATTTAAGAGAAATTTAGG-AGAAAATTGAGAGCAAATT
1 AAATAGGAATTTAAGAGAAATTT-GGAAGAAAATTGAGAGCAAATT
* * * *
12872713 AAATATGAATTTGAGAGAAATTTGGAAGGAAATTTAGAGCAAATT
1 AAATAGGAATTTAAGAGAAATTTGGAAGAAAATTGAGAGCAAATT
12872758 GAGAGGAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 2 0.05
45 37 0.95
ACGTcount: A:0.48, C:0.02, G:0.23, T:0.27
Consensus pattern (45 bp):
AAATAGGAATTTAAGAGAAATTTGGAAGAAAATTGAGAGCAAATT
Found at i:12876383 original size:21 final size:21
Alignment explanation
Indices: 12876342--12876385 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
12876332 AATGTTTATA
12876342 AATATAAACATAAATTAAAAT
1 AATATAAACATAAATTAAAAT
* *
12876363 AATA-AAACAATATATTTAAAT
1 AATATAAAC-ATAAATTAAAAT
12876384 AA
1 AA
12876386 ATAGTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (21 bp):
AATATAAACATAAATTAAAAT
Found at i:12876640 original size:22 final size:23
Alignment explanation
Indices: 12876599--12876650 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
12876589 GTTTTATATA
* *
12876599 ATTTAATAAATATATTAAAATGT
1 ATTTAATAAATAAATAAAAATGT
*
12876622 ATTTAA-AAATAAATAAAAATAT
1 ATTTAATAAATAAATAAAAATGT
*
12876644 AATTAAT
1 ATTTAAT
12876651 CAAAATTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
ATTTAATAAATAAATAAAAATGT
Found at i:12885498 original size:114 final size:115
Alignment explanation
Indices: 12885240--12886047 Score: 678
Period size: 114 Copynumber: 7.1 Consensus size: 115
12885230 AAATCTCAAG
* * * * * **
12885240 ACCAAAACGCATCATTTTTGTATTGATGTATACAATAATTAGTGGCGATTATGATAAAACGCCGC
1 ACCAAAACGCA-GAGTTTGGTATTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGC
* * ** ** *
12885305 TAAAGT-A-AGTAATAGCGGCGCATTGTGGGAAGCGCCGCAA-AAAT-CTTA
65 TAAAGTAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGC-TA
* * *
12885353 ACCAAAACGCAGCGTTTTGGTATCGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCTGC
1 ACCAAAACGCAGAG-TTTGGTATTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGC
*
12885418 TAAA-TAACAATATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGC-A
65 TAAAGTAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCTA
* * * * * **
12885467 CACCAAAACGCAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGTGCTTA-TAGGAAACGCCGC
1 -ACCAAAACGCAGAGTTTGGTATTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGC
* * * * * * *
12885531 TAAAGTATAC--TATTACCGGCGCTTT-TGATAAAGCGTCGCTATAT-TTCTTA
65 TAAAGTA-ACAGTATTAGCGGCGCTTTCAG-TTAAGCGCCGCAAGATATGC-TA
* * *
12885581 ACCAAAACTCAAAGTTTTGGTCTTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGC
1 ACCAAAACGCAGAG-TTTGGTATTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGC
12885646 TAAA-TAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGC-A
65 TAAAGTAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCTA
* * * * * **
12885695 CACCAAAACGCAAAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTA-TAGGAAACGCCGC
1 -ACCAAAACGCAGAGTTTGGTATTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGC
* * * * * *
12885759 TAAAGTATAC--TATTACCGGCGC-TTCTGATAAAGCGCCGCTATAT-TTCTTA
65 TAAAGTA-ACAGTATTAGCGGCGCTTTCAG-TTAAGCGCCGCAAGATATGC-TA
* * * *
12885809 ACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGTTTACAATAAAACGCCGC
1 ACCAAAACGCAGAG-TTTGGTATTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGC
* * *
12885874 TACA-TAACAGTATTAGTGGCGC-TTAACGTTAAGCGCCGCAAGATATGC-A
65 TAAAGTAACAGTATTAGCGGCGCTTTCA-GTTAAGCGCCGCAAGATATGCTA
* * * **
12885923 CACCAAAACGCAGAGTTTGGTATTGATGTATATTAGAATTACTGGCGCTTATTGA-AAAACGCCG
1 -ACCAAAACGCAGAGTTTGGTATTGATGTATACTATAATTAGTGGCGCTTA-CAATAAAACGCCG
* * **
12885987 CTAAAGTATAC--TATTAGCGGTGCTTTCCTAG--AAGCACCGCAAGATATATTA
64 CTAAAGTA-ACAGTATTAGCGGCGCTTT-C-AGTTAAGCGCCGCAAGATATGCTA
*
12886038 ACCGAAACGC
1 ACCAAAACGC
12886048 TGCGTTTAAA
Statistics
Matches: 555, Mismatches: 103, Indels: 73
0.76 0.14 0.10
Matches are distributed among these distances:
112 10 0.02
113 163 0.29
114 242 0.44
115 129 0.23
116 10 0.02
117 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (115 bp):
ACCAAAACGCAGAGTTTGGTATTGATGTATACTATAATTAGTGGCGCTTACAATAAAACGCCGCT
AAAGTAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCTA
Found at i:12885584 original size:228 final size:228
Alignment explanation
Indices: 12885348--12886012 Score: 1116
Period size: 228 Copynumber: 2.9 Consensus size: 228
12885338 GCCGCAAAAA
* * *
12885348 TCTTAACCAAAACGCAGCGTTTTGGTATCGATGTATACTATAATTAGTGGCGCTTACAATAAAAC
1 TCTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGCTTACAATAAAAC
* *
12885413 GCTGCTAAATAACAATATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCACACCAAAACGC
66 GCCGCTAAATAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCACACCAAAACGC
*
12885478 AGAGTTTGGTATTGAGGTATATTAGAATTAGTGGTGCTTATAGGAAACGCCGCTAAAGTATACTA
131 AGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTATAGGAAACGCCGCTAAAGTATACTA
*
12885543 TTACCGGCGCTTTTGATAAAGCGTCGCTATATT
196 TTACCGGCGCTTTTGATAAAGCGCCGCTATATT
**
12885576 TCTTAACCAAAACTCAAAGTTTTGGTCTTGATGTATACTATAATTAGTGGCGCTTACAATAAAAC
1 TCTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGCTTACAATAAAAC
12885641 GCCGCTAAATAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCACACCAAAACGC
66 GCCGCTAAATAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCACACCAAAACGC
*
12885706 AAAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTATAGGAAACGCCGCTAAAGTATACTA
131 AGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTATAGGAAACGCCGCTAAAGTATACTA
*
12885771 TTACCGGCGCTTCTGATAAAGCGCCGCTATATT
196 TTACCGGCGCTTTTGATAAAGCGCCGCTATATT
*
12885804 TCTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGTTTACAATAAAAC
1 TCTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGCTTACAATAAAAC
* * *
12885869 GCCGCTACATAACAGTATTAGTGGCGC-TTAACGTTAAGCGCCGCAAGATATGCACACCAAAACG
66 GCCGCTAAATAACAGTATTAGCGGCGCTTTCA-GTTAAGCGCCGCAAGATATGCACACCAAAACG
* * * *
12885933 CAGAGTTTGGTATTGATGTATATTAGAATTACTGGCGCTTATTGAAAAACGCCGCTAAAGTATAC
130 CAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTATAG-GAAACGCCGCTAAAGTATAC
* *
12885998 TATTAGCGGTGCTTT
194 TATTACCGGCGCTTT
12886013 CCTAGAAGCA
Statistics
Matches: 410, Mismatches: 25, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
227 3 0.01
228 376 0.92
229 31 0.08
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (228 bp):
TCTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGCTTACAATAAAAC
GCCGCTAAATAACAGTATTAGCGGCGCTTTCAGTTAAGCGCCGCAAGATATGCACACCAAAACGC
AGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTATAGGAAACGCCGCTAAAGTATACTA
TTACCGGCGCTTTTGATAAAGCGCCGCTATATT
Found at i:12886527 original size:14 final size:15
Alignment explanation
Indices: 12886498--12886531 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
12886488 TTGGGTTTAT
12886498 GGTTTAAGAGTTTGG
1 GGTTTAAGAGTTTGG
12886513 GGTTTAAGA-TTTGG
1 GGTTTAAGAGTTTGG
12886527 GGTTT
1 GGTTT
12886532 GGGGTTTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (15 bp):
GGTTTAAGAGTTTGG
Found at i:12886943 original size:14 final size:17
Alignment explanation
Indices: 12886909--12886944 Score: 51
Period size: 14 Copynumber: 2.3 Consensus size: 17
12886899 TATAATACAT
12886909 TAATTGAATAATATAAA
1 TAATTGAATAATATAAA
12886926 TAATT-AATAAT-T-AA
1 TAATTGAATAATATAAA
12886940 TAATT
1 TAATT
12886945 TTAAATATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.37
15 1 0.05
16 6 0.32
17 5 0.26
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TAATTGAATAATATAAA
Found at i:12889408 original size:17 final size:17
Alignment explanation
Indices: 12889386--12889478 Score: 67
Period size: 17 Copynumber: 5.9 Consensus size: 17
12889376 TTATTTTCTA
12889386 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
12889403 TATAAGTTTTCT-AA--
1 TATAAGTTTTCTAAATT
*
12889417 -ATAATTTTTCTAAATT
1 TATAAGTTTTCTAAATT
* * **
12889433 TATTAG-TATAAAAATT
1 TATAAGTTTTCTAAATT
*
12889449 TAGT-AG-TAT-TAAATT
1 TA-TAAGTTTTCTAAATT
12889464 TATAAGTTTTCTAAA
1 TATAAGTTTTCTAAA
12889479 AAGTTGTTCT
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
13 10 0.17
14 3 0.05
15 9 0.15
16 18 0.30
17 20 0.33
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:12889413 original size:30 final size:30
Alignment explanation
Indices: 12889379--12889496 Score: 98
Period size: 30 Copynumber: 3.9 Consensus size: 30
12889369 TAGTGTTTTA
*
12889379 TTTTCTATATAAGTTTTCTAAATTTATAAG
1 TTTTCTAAATAAGTTTTCTAAATTTATAAG
* *
12889409 TTTTCTAAATAATTTTTCTAAATTTATTAG
1 TTTTCTAAATAAGTTTTCTAAATTTATAAG
* ** * *
12889439 -TATAAAAATTTAGTAGTAT-TAAATTTATAAG
1 TTTTCTAAA-TAAGT--TTTCTAAATTTATAAG
*
12889470 TTTTCTAAA-AAGTTGTTCTAGATTTAT
1 TTTTCTAAATAAGTT-TTCTAAATTTAT
12889497 TATTAATAAA
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
28 1 0.02
29 6 0.09
30 41 0.62
31 11 0.17
32 7 0.11
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (30 bp):
TTTTCTAAATAAGTTTTCTAAATTTATAAG
Found at i:12889429 original size:13 final size:13
Alignment explanation
Indices: 12889379--12889431 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
12889369 TAGTGTTTTA
*
12889379 TTTTCTATATAAG
1 TTTTCTAAATAAG
12889392 TTTTCTAAATTTATAAG
1 TTTTCT-AA---ATAAG
*
12889409 TTTTCTAAATAAT
1 TTTTCTAAATAAG
12889422 TTTTCTAAAT
1 TTTTCTAAAT
12889432 TTATTAGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
13 20 0.59
14 1 0.03
16 2 0.06
17 11 0.32
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.55
Consensus pattern (13 bp):
TTTTCTAAATAAG
Found at i:12889464 original size:15 final size:16
Alignment explanation
Indices: 12889427--12889465 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
12889417 ATAATTTTTC
*
12889427 TAAATTTATTAGTATA
1 TAAATTTAGTAGTATA
*
12889443 AAAATTTAGTAGTAT-
1 TAAATTTAGTAGTATA
12889458 TAAATTTA
1 TAAATTTA
12889466 TAAGTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (16 bp):
TAAATTTAGTAGTATA
Found at i:12889464 original size:61 final size:61
Alignment explanation
Indices: 12889397--12889544 Score: 178
Period size: 61 Copynumber: 2.4 Consensus size: 61
12889387 ATAAGTTTTC
*
12889397 TAAATTTATAAGTTTTCTAAATAATTTTTCTAAATTTATTAGT-ATAAAAATTTAGT-AGTAT
1 TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAAT-AAAATTTA-TAAGTAT
* *
12889458 TAAATTTATAAGTTTTCTAAA-AAGTTGTTCTAGATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTCTAAATAA-TTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * *
12889519 CAATTTTACAAGTTTTGC-AAATAATT
1 TAAATTTATAAGTTTT-CTAAATAATT
12889545 ATATTTTTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
60 3 0.04
61 68 0.89
62 5 0.07
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (61 bp):
TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:12889665 original size:15 final size:15
Alignment explanation
Indices: 12889645--12889694 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
12889635 ACGATAACTT
12889645 ATAAATAATAACATA
1 ATAAATAATAACATA
12889660 ATAAAT--T-ACATA
1 ATAAATAATAACATA
*
12889672 ATACATAATAACATA
1 ATAAATAATAACATA
*
12889687 ATACATAA
1 ATAAATAA
12889695 CTTATATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
12 10 0.32
13 1 0.03
14 1 0.03
15 19 0.61
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAAATAATAACATA
Found at i:12889716 original size:21 final size:21
Alignment explanation
Indices: 12889690--12889747 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
12889680 TAACATAATA
* *
12889690 CATAACTTATATATAAGCTTG
1 CATAACTTATATATAAACTTC
* *
12889711 TATAACTTACATA-ACAACTTC
1 CATAACTTATATATA-AACTTC
12889732 CATAACTTATATATAA
1 CATAACTTATATATAA
12889748 TCTGATAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
CATAACTTATATATAAACTTC
Found at i:12889760 original size:83 final size:84
Alignment explanation
Indices: 12889669--12889824 Score: 269
Period size: 84 Copynumber: 1.9 Consensus size: 84
12889659 AATAAATTAC
* *
12889669 ATAATACATAATAACATAATACATAACTTATA-TATAAGCTTGTATAACTTACATAACAACTTCC
1 ATAATACATAATAACATAATACATAACTTATATTATAAGATTGCATAACTTACATAACAACTTCC
12889733 ATAACTTATATATAATCTG
66 ATAACTTATATATAATCTG
* *
12889752 ATAATACATAATAACATAATACATAACTTATATTATAATATTGCATAACTTACATAATAACTTCC
1 ATAATACATAATAACATAATACATAACTTATATTATAAGATTGCATAACTTACATAACAACTTCC
12889817 ATAACTTA
66 ATAACTTA
12889825 ATACACCACT
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
83 32 0.47
84 36 0.53
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (84 bp):
ATAATACATAATAACATAATACATAACTTATATTATAAGATTGCATAACTTACATAACAACTTCC
ATAACTTATATATAATCTG
Found at i:12889850 original size:9 final size:9
Alignment explanation
Indices: 12889832--12890335 Score: 385
Period size: 9 Copynumber: 56.1 Consensus size: 9
12889822 TTAATACACC
*
12889832 ACTTAAATA
1 ACTTACATA
12889841 ACTTACATA
1 ACTTACATA
12889850 ACTTACATA
1 ACTTACATA
* *
12889859 AATTAAATA
1 ACTTACATA
12889868 ACTTACATA
1 ACTTACATA
12889877 ACTTACATA
1 ACTTACATA
*
12889886 AATTA-AGTA
1 ACTTACA-TA
12889895 ACTTACATA
1 ACTTACATA
12889904 ACTTACATA
1 ACTTACATA
** *
12889913 AAATAAATA
1 ACTTACATA
*
12889922 ATTTACATA
1 ACTTACATA
12889931 ACTTACATA
1 ACTTACATA
* *
12889940 AATTAAATA
1 ACTTACATA
*
12889949 ACTTAAATA
1 ACTTACATA
*
12889958 ACTTGCATA
1 ACTTACATA
**
12889967 ACTTTGACCGA
1 AC-TT-ACATA
*
12889978 A-TTAAATA
1 ACTTACATA
12889986 ACTTACATA
1 ACTTACATA
12889995 ACTTACATA
1 ACTTACATA
*
12890004 AATTA-AGTA
1 ACTTACA-TA
12890013 ACTTACATA
1 ACTTACATA
** *
12890022 AAATAAATA
1 ACTTACATA
*
12890031 ATTTACATA
1 ACTTACATA
12890040 ACTTACATA
1 ACTTACATA
* *
12890049 AATTAAATA
1 ACTTACATA
*
12890058 ACTTAAATA
1 ACTTACATA
12890067 ACTTACATA
1 ACTTACATA
**
12890076 ACTTTGACCGA
1 AC-TT-ACATA
*
12890087 A-TTAAATA
1 ACTTACATA
12890095 ACTTACATAATA
1 ACTTAC---ATA
12890107 ACTTACATAA
1 ACTTACAT-A
*
12890117 AC-TAAATA
1 ACTTACATA
12890125 ACTTACATA
1 ACTTACATA
12890134 ACTTACATA
1 ACTTACATA
* *
12890143 AATTAAATA
1 ACTTACATA
12890152 ACTTACATA
1 ACTTACATA
12890161 ACTTACATAA
1 ACTTACAT-A
* *** *
12890171 ATTTGTTTC
1 ACTTACATA
12890180 ACTTACATA
1 ACTTACATA
12890189 ACTTACATAATA
1 ACTTAC---ATA
*
12890201 ACTTACATT
1 ACTTACATA
*
12890210 A--TACACA
1 ACTTACATA
*
12890217 ACTCACATA
1 ACTTACATA
12890226 A-TTA-AT-
1 ACTTACATA
* *
12890232 ATTATACACA
1 ACT-TACATA
12890242 ACTTACATA
1 ACTTACATA
*
12890251 A--TACATT
1 ACTTACATA
12890258 ACTTACATA
1 ACTTACATA
12890267 ACTTACAGT-
1 ACTTACA-TA
12890276 ACTTACATA
1 ACTTACATA
12890285 A--TACATA
1 ACTTACATA
12890292 ACTTACATA
1 ACTTACATA
12890301 ACTTACATA
1 ACTTACATA
12890310 A--TACATA
1 ACTTACATA
12890317 ACTTACATA
1 ACTTACATA
12890326 ACTTACATA
1 ACTTACATA
12890335 A
1 A
12890336 TACATAAAAA
Statistics
Matches: 390, Mismatches: 72, Indels: 66
0.74 0.14 0.12
Matches are distributed among these distances:
6 1 0.00
7 28 0.07
8 16 0.04
9 303 0.78
10 17 0.04
11 7 0.02
12 18 0.05
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.33
Consensus pattern (9 bp):
ACTTACATA
Found at i:12890190 original size:94 final size:90
Alignment explanation
Indices: 12890011--12890335 Score: 313
Period size: 94 Copynumber: 3.7 Consensus size: 90
12890001 ATAAATTAAG
* *
12890011 TAACTTACATAAAATAAATAATTTACATAACTTACATAAATTAAATAACTTAAATAACTTACATA
1 TAACTTACAT--AATAAATAACTTACATAACTTACAT-AATTAAATAACTTACATAACTTACATA
* ** * *
12890076 ACTTTGACCGAATTAAATAACTTACATAA
63 AATTTGTTC-ACTTACATAACTTACATAA
12890105 TAACTTACATAAACTAAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACATA
1 TAACTTACAT-AA-TAAATAACTTACATAACTTACAT-AATTAAATAACTTACATAACTTACATA
12890170 AATTTGTTTCACTTACATAACTTACATAA
63 AATTTG-TTCACTTACATAACTTACATAA
* * * *
12890199 TAACTTACATTATACACAACTCACATAA-TTA-AT-ATT--AT-AC--AC--AACTTACAT-AAT
1 TAACTTACATAATAAATAACTTACATAACTTACATAATTAAATAACTTACATAACTTACATAAAT
*** *
12890253 ACATT-ACTTACATAACTTAC--AG
66 TTGTTCACTTACATAACTTACATAA
* *
12890275 T-ACTTACATAATACATAACTTACATAACTTACATAA-TACATAACTTACATAACTTACATAA
1 TAACTTACATAATAAATAACTTACATAACTTACATAATTAAATAACTTACATAACTTACATAA
12890336 TACATAAAAA
Statistics
Matches: 200, Mismatches: 18, Indels: 35
0.79 0.07 0.14
Matches are distributed among these distances:
75 23 0.12
76 5 0.03
77 3 0.01
78 16 0.08
79 4 0.02
80 5 0.03
81 9 0.05
82 2 0.01
83 2 0.01
84 9 0.05
85 3 0.01
86 2 0.01
88 3 0.01
90 2 0.01
91 3 0.01
92 13 0.06
93 4 0.02
94 91 0.46
95 1 0.00
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.34
Consensus pattern (90 bp):
TAACTTACATAATAAATAACTTACATAACTTACATAATTAAATAACTTACATAACTTACATAAAT
TTGTTCACTTACATAACTTACATAA
Found at i:12890298 original size:50 final size:49
Alignment explanation
Indices: 12890235--12890342 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 49
12890225 AATTAATATT
*
12890235 ATACACAACTTACATAATACATTACTTACATAACTTACAGTACTTACATA
1 ATACATAACTTACATAATACATTACTTACATAACTTACA-TACTTACATA
*
12890285 ATACATAACTTACATAACTTACA-TA-ATACATAACTTACATAACTTACATA
1 ATACATAACTTACATAA--TACATTACTTACATAACTTACAT-ACTTACATA
12890335 ATACATAA
1 ATACATAA
12890343 AAATATATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
49 1 0.02
50 46 0.87
51 2 0.04
52 4 0.08
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.31
Consensus pattern (49 bp):
ATACATAACTTACATAATACATTACTTACATAACTTACATACTTACATA
Found at i:12896376 original size:42 final size:42
Alignment explanation
Indices: 12896328--12896597 Score: 275
Period size: 42 Copynumber: 6.3 Consensus size: 42
12896318 TTTGTGAAAC
*
12896328 AAGCGCCGCTAAAGAACACT-ACTTTTAGCGGCATTTTTGAAC-
1 AAGCGCCGCTAAAGAACA-TGACTTTTAGCGGCATTTTT-TACT
*
12896370 AAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCATTTTTTCCT
1 AAGCGCCGCTAAAGAACATGACT-TTTAGCGGCATTTTTTACT
* *
12896412 AAGCGCCGCTAAAGAACATGATCTTTT-GCGACATTTTTTTCT
1 AAGCGCCGCTAAAGAACATGA-CTTTTAGCGGCATTTTTTACT
* *
12896454 AAGCGCCGCTAAAGAACATGATCTTTT-GCGGCGTTTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGA-CTTTTAGCGGC--ATTTTTTACT
* * *
12896498 AAGCACCGCTAAAGAAAATGA-TCTTTAGCGGCATTTTTTGCT
1 AAGCGCCGCTAAAGAACATGACT-TTTAGCGGCATTTTTTACT
* * *
12896540 AAGCGCCGCTAAAGAACATGA-TCTTTAGTGGCGTTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGACT-TTTAGCGGCATTTTTTAC--T
*
12896584 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
12896598 TTAGCGACGT
Statistics
Matches: 200, Mismatches: 17, Indels: 20
0.84 0.07 0.08
Matches are distributed among these distances:
41 3 0.01
42 144 0.72
43 6 0.03
44 47 0.23
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGACTTTTAGCGGCATTTTTTACT
Found at i:12896508 original size:128 final size:127
Alignment explanation
Indices: 12896328--12896597 Score: 366
Period size: 128 Copynumber: 2.1 Consensus size: 127
12896318 TTTGTGAAAC
* *
12896328 AAGCGCCGCTAAAGAACACTACTTTTAGCGGCATTTTTGAACAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACACTACTTTTAGCGGCATTTTTGAACAAGCACCGCTAAAGAAAATGATC
*
12896393 TTTAGCGGCATTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTTGCGACATTTTTTTC-T
66 TTTAGCGGCATTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCGACATTTTTTTCGT
* ***
12896454 AAGCGCCGCTAAAGAACA-TGATCTTTT-GCGGCGTTTTTTTTCCTAAGCACCGCTAAAGAAAAT
1 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGC-ATTTTTGAAC-AAGCACCGCTAAAGAAAAT
* * * *
12896517 GATCTTTAGCGGCATTTTTTGCTAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCT
62 GATCTTTAGCGGCATTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCGACATTTTTTTC-
12896582 GT
126 GT
*
12896584 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
12896598 TTAGCGACGT
Statistics
Matches: 126, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
125 1 0.01
126 24 0.19
127 11 0.09
128 76 0.60
130 14 0.11
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (127 bp):
AAGCGCCGCTAAAGAACACTACTTTTAGCGGCATTTTTGAACAAGCACCGCTAAAGAAAATGATC
TTTAGCGGCATTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCGACATTTTTTTCGT
Done.