Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 48 of 216
Found at i:13839619 original size:21 final size:22
Alignment explanation
Indices: 13839584--13839629 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
13839574 CCCTATTCAC
* *
13839584 ATTTTCATTTAATTTTATTATT
1 ATTTTCATTTAATTTAATAATT
*
13839606 ATTTT-ATTTTATTTAATAATT
1 ATTTTCATTTAATTTAATAATT
13839627 ATT
1 ATT
13839630 AGTAGTAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
ATTTTCATTTAATTTAATAATT
Found at i:13844801 original size:41 final size:41
Alignment explanation
Indices: 13844756--13844849 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
13844746 TTCTAGTTGA
* *
13844756 AAGCGTTTTTTTGCA-AATCACCTGAAAACACTTTTACTTGG
1 AAGCGTTTTTTTG-AGAATCACCTGAAAACACTTTCAATTGG
* ** * *
13844797 AAGCGTTTTTCTGAGTTTCATCTGAAAACGCTTTCAATTGG
1 AAGCGTTTTTTTGAGAATCACCTGAAAACACTTTCAATTGG
13844838 AAGCGTTTTTTT
1 AAGCGTTTTTTT
13844850 TTAAATTGGC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 1 0.02
41 43 0.98
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (41 bp):
AAGCGTTTTTTTGAGAATCACCTGAAAACACTTTCAATTGG
Found at i:13850693 original size:43 final size:43
Alignment explanation
Indices: 13850572--13850768 Score: 165
Period size: 43 Copynumber: 4.6 Consensus size: 43
13850562 CTGGTAAGTG
* * *
13850572 TTTTCGTGTAAGACCACATCTGGGAC-GTTGG-ATTCAACTTGTT
1 TTTTCGTGTAAGACCACGTCTGGGACAG-TGGCA-TCGACTTGTA
*
13850615 TTTTTGTGTAAGACCACGTCTGGGAC-GTTGGCATCGACTTGTA
1 TTTTCGTGTAAGACCACGTCTGGGACAG-TGGCATCGACTTGTA
* * *
13850658 TTTTCGTGTAAGACC-CTGTCTAGGACAGTGACATCGATTTGTGA
1 TTTTCGTGTAAGACCAC-GTCTGGGACAGTGGCATCGACTTGT-A
* * *
13850702 -TTACATGTAA-ACCACGTCTGGGACAGTGGCATCGATTTGTGA
1 TTTTCGTGTAAGACCACGTCTGGGACAGTGGCATCGACTTGT-A
* * * *
13850744 -TTACATGTAAAACCACGTCTAGGAC
1 TTTTCGTGTAAGACCACGTCTGGGAC
13850769 GTTAACGTTG
Statistics
Matches: 135, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
42 39 0.29
43 93 0.69
44 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
TTTTCGTGTAAGACCACGTCTGGGACAGTGGCATCGACTTGTA
Found at i:13850735 original size:42 final size:43
Alignment explanation
Indices: 13850621--13850768 Score: 178
Period size: 43 Copynumber: 3.5 Consensus size: 43
13850611 TGTTTTTTTG
* * * *
13850621 TGTAAGACCACGTCTGGGAC-GTTGGCATCGACTTGT-ATTTTCG
1 TGTAAGACCACGTCTAGGACAG-TGGCATCGATTTGTGA-TTACA
*
13850664 TGTAAGACC-CTGTCTAGGACAGTGACATCGATTTGTGATTACA
1 TGTAAGACCAC-GTCTAGGACAGTGGCATCGATTTGTGATTACA
*
13850707 TGTAA-ACCACGTCTGGGACAGTGGCATCGATTTGTGATTACA
1 TGTAAGACCACGTCTAGGACAGTGGCATCGATTTGTGATTACA
*
13850749 TGTAAAACCACGTCTAGGAC
1 TGTAAGACCACGTCTAGGAC
13850769 GTTAACGTTG
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
42 39 0.42
43 51 0.55
44 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACAGTGGCATCGATTTGTGATTACA
Found at i:13853799 original size:557 final size:557
Alignment explanation
Indices: 13852744--13853856 Score: 2208
Period size: 557 Copynumber: 2.0 Consensus size: 557
13852734 TTAATGTAAT
13852744 ATGGTTAATGTTAGTGATTTTTTGCATATTTAGAAATTTTATAAAAAAAACTTGAAAATAGACGT
1 ATGGTTAATGTTAGTGATTTTTTGCATATTTAGAAATTTTATAAAAAAAACTTGAAAATAGACGT
13852809 TATGTCTGGTAATGCCTCATAACCCCAATCCGGCGACAGACACGGGTTAAGGGTGTTACAGGGTC
66 TATGTCTGGTAATGCCTCATAACCCCAATCCGGCGACAGACACGGGTTAAGGGTGTTACAGGGTC
13852874 GTCCTTAATCGGGTAAAGGGTCGGAAATGGCGAACACCATAACAATTTTCCCCCACCTAGTTTGA
131 GTCCTTAATCGGGTAAAGGGTCGGAAATGGCGAACACCATAACAATTTTCCCCCACCTAGTTTGA
13852939 AGAAAAGTAGCAAAGTGACTCTTCTGAGAACCTATCTAAGCGGAGTGATGGGATTTTAAATGAAT
196 AGAAAAGTAGCAAAGTGACTCTTCTGAGAACCTATCTAAGCGGAGTGATGGGATTTTAAATGAAT
13853004 TTAAATTTTTTTAAATTTGTTGTATACGCTTTATGAATTTAATTGGGCCTTCGTTCCTAGATAAG
261 TTAAATTTTTTTAAATTTGTTGTATACGCTTTATGAATTTAATTGGGCCTTCGTTCCTAGATAAG
13853069 TGAATCATTAGGTTTTGAATTTCTTTAAAATGAGGTGGGTTAAACCCTAAGTGTTCATCTATTTG
326 TGAATCATTAGGTTTTGAATTTCTTTAAAATGAGGTGGGTTAAACCCTAAGTGTTCATCTATTTG
13853134 AATTTCAATTTTTTTTGAGGGAGAGATACCATTGAAAAGTAGAATCGCCTTTCAATGGTAAACTT
391 AATTTCAATTTTTTTTGAGGGAGAGATACCATTGAAAAGTAGAATCGCCTTTCAATGGTAAACTT
13853199 CTAAAATTTTCAAATTATCATTCTAGTTGTTATAGAGCTAGTCAGTCATGATGGTTAAGATGAAA
456 CTAAAATTTTCAAATTATCATTCTAGTTGTTATAGAGCTAGTCAGTCATGATGGTTAAGATGAAA
13853264 GGAGGAAGTCGCAGTGGTCATAGTAACCGCAGTGTGA
521 GGAGGAAGTCGCAGTGGTCATAGTAACCGCAGTGTGA
13853301 ATGGTTAATGTTAGTGATTTTTTGCATATTTAGAAATTTTATAAAAAAAACTTGAAAATAGACGT
1 ATGGTTAATGTTAGTGATTTTTTGCATATTTAGAAATTTTATAAAAAAAACTTGAAAATAGACGT
* *
13853366 TATGTCTGGTAATGCCTCATAACCCCAATCTGGCGACAGAGACGGGTTAAGGGTGTTACAGGGTC
66 TATGTCTGGTAATGCCTCATAACCCCAATCCGGCGACAGACACGGGTTAAGGGTGTTACAGGGTC
13853431 GTCCTTAATCGGGTAAAGGGTCGGAAATGGCGAACACCATAACAATTTTCCCCCACCTAGTTTGA
131 GTCCTTAATCGGGTAAAGGGTCGGAAATGGCGAACACCATAACAATTTTCCCCCACCTAGTTTGA
13853496 AGAAAAGTAGCAAAGTGACTCTTCTGAGAACCTATCTAAGCGGAGTGATGGGATTTTAAATGAAT
196 AGAAAAGTAGCAAAGTGACTCTTCTGAGAACCTATCTAAGCGGAGTGATGGGATTTTAAATGAAT
13853561 TTAAATTTTTTTAAATTTGTTGTATACGCTTTATGAATTTAATTGGGCCTTCGTTCCTAGATAAG
261 TTAAATTTTTTTAAATTTGTTGTATACGCTTTATGAATTTAATTGGGCCTTCGTTCCTAGATAAG
13853626 TGAATCATTAGGTTTTGAATTTCTTTAAAATGAGGTGGGTTAAACCCTAAGTGTTCATCTATTTG
326 TGAATCATTAGGTTTTGAATTTCTTTAAAATGAGGTGGGTTAAACCCTAAGTGTTCATCTATTTG
13853691 AATTTCAATTTTTTTTGAGGGAGAGATACCATTGAAAAGTAGAATCGCCTTTCAATGGTAAACTT
391 AATTTCAATTTTTTTTGAGGGAGAGATACCATTGAAAAGTAGAATCGCCTTTCAATGGTAAACTT
13853756 CTAAAATTTTCAAATTATCATTCTAGTTGTTATAGAGCTAGTCAGTCATGATGGTTAAGATGAAA
456 CTAAAATTTTCAAATTATCATTCTAGTTGTTATAGAGCTAGTCAGTCATGATGGTTAAGATGAAA
13853821 GGAGGAAGTCGCAGTGGTCATAGTAACCGCAGTGTG
521 GGAGGAAGTCGCAGTGGTCATAGTAACCGCAGTGTG
13853857 TGTAAGGGTG
Statistics
Matches: 554, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
557 554 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (557 bp):
ATGGTTAATGTTAGTGATTTTTTGCATATTTAGAAATTTTATAAAAAAAACTTGAAAATAGACGT
TATGTCTGGTAATGCCTCATAACCCCAATCCGGCGACAGACACGGGTTAAGGGTGTTACAGGGTC
GTCCTTAATCGGGTAAAGGGTCGGAAATGGCGAACACCATAACAATTTTCCCCCACCTAGTTTGA
AGAAAAGTAGCAAAGTGACTCTTCTGAGAACCTATCTAAGCGGAGTGATGGGATTTTAAATGAAT
TTAAATTTTTTTAAATTTGTTGTATACGCTTTATGAATTTAATTGGGCCTTCGTTCCTAGATAAG
TGAATCATTAGGTTTTGAATTTCTTTAAAATGAGGTGGGTTAAACCCTAAGTGTTCATCTATTTG
AATTTCAATTTTTTTTGAGGGAGAGATACCATTGAAAAGTAGAATCGCCTTTCAATGGTAAACTT
CTAAAATTTTCAAATTATCATTCTAGTTGTTATAGAGCTAGTCAGTCATGATGGTTAAGATGAAA
GGAGGAAGTCGCAGTGGTCATAGTAACCGCAGTGTGA
Found at i:13858786 original size:8 final size:8
Alignment explanation
Indices: 13858768--13858796 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
13858758 GCTTAAATGA
13858768 GTTGA-TG
1 GTTGATTG
13858775 GTTGATTG
1 GTTGATTG
13858783 GTTGATTG
1 GTTGATTG
13858791 GTTGAT
1 GTTGAT
13858797 GGTGTATTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 5 0.24
8 16 0.76
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (8 bp):
GTTGATTG
Found at i:13877762 original size:134 final size:134
Alignment explanation
Indices: 13877535--13878003 Score: 430
Period size: 134 Copynumber: 3.5 Consensus size: 134
13877525 TAAATTGAAA
* * * * * * * * *
13877535 AACTCTAATTGAATTGTGCATGATCGTAAATGAATAAACTTAAGCTATGATCGTAAACCAA-TGA
1 AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAA-TAAGTAA
* ** * * *
13877599 GCTTTAATAATATGAGTTGTGATCGTAAATCACCAAACTGTTTGAATGGAGTTGTGATCATAAAT
65 ACTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAAT
13877664 CGGTG
130 CGGTG
* * * * *
13877669 AACTCTAATTGAATCGTTCATTATCATAAATCAATGAACTTAAGTTTTGATTGTAAATTAG-AAA
1 AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAATAAGTAAA
* ** * * *
13877733 TCTTTAATAATACCAATTTTCATTTTAAATCATCAAACTGTTTGAATGGAGTTGCGATCGTAAAT
66 -CTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAAT
13877798 CAGG-G
130 C-GGTG
* * * *
13877803 AACTCGAAGTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATCGTAAATAAGTGAA
1 AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAATAAGTAAA
* * * * * *
13877868 CTTTAATAATATCGATTGTGATCGTAAATCAAAAAATTGTTTGAATAGA-TT-TGCATTCATAAA
66 CTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTG-A-TCATAAA
* *
13877931 TTGAAT-
129 TCG-GTG
* * * * * *
13877937 AACGCTAATTGAATTC-TTCATGATCGTAAATTAATGAACTTAAGGTGTGATTGTAAATCAGCAA
1 AACTCTAATTGAA-TCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAATAAGTAA
13878001 ACT
65 ACT
13878004 GTTTGAATGG
Statistics
Matches: 270, Mismatches: 56, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
132 1 0.00
133 6 0.02
134 257 0.95
135 6 0.02
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (134 bp):
AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAATAAGTAAA
CTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAATC
GGTG
Found at i:13880792 original size:42 final size:43
Alignment explanation
Indices: 13880733--13880866 Score: 139
Period size: 42 Copynumber: 3.1 Consensus size: 43
13880723 ATGTTATCAA
* *
13880733 ATATCGATGACACTGTCCCAGACAGGGTCTTACACGAAAT-T-
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTC
* *
13880774 ATATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCTC
1 ATAT-CGATGCCAATGTCCCAGACAGGGTCTTACAC-GAAATCTC
* ** * *
13880819 AAATCGATGCCAACATCCCAGAC-GAGGTTTTACACGAAATCAC
1 ATATCGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCTC
13880862 ATATC
1 ATATC
13880867 AGAATCCTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
41 4 0.05
42 28 0.37
43 14 0.18
44 27 0.36
45 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTC
Found at i:13880840 original size:44 final size:42
Alignment explanation
Indices: 13880748--13880858 Score: 118
Period size: 44 Copynumber: 2.6 Consensus size: 42
13880738 GATGACACTG
* **
13880748 TCCCAGACAGGGTCTTACACGAAATTATATACGATGCCAATG
1 TCCCAGACAGGGTCTTACACGAAATTAAATACGATGCCAACA
* *
13880790 TCCCAGACATGGTCTTACACATAAATCTCAAAT-CGATGCCAACA
1 TCCCAGACAGGGTCTTACAC-GAAAT-T-AAATACGATGCCAACA
*
13880834 TCCCAGAC-GAGGTTTTACACGAAAT
1 TCCCAGACAG-GGTCTTACACGAAAT
13880859 CACATATCAG
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
42 19 0.33
43 8 0.14
44 27 0.47
45 3 0.05
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATTAAATACGATGCCAACA
Found at i:13886654 original size:7 final size:7
Alignment explanation
Indices: 13886642--13886672 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
13886632 CGACTTTGTC
13886642 TTTTCTT
1 TTTTCTT
13886649 TTTTCTT
1 TTTTCTT
13886656 TTTTCTT
1 TTTTCTT
13886663 TTTTCTT
1 TTTTCTT
13886670 TTT
1 TTT
13886673 CAGAAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTCTT
Found at i:13894429 original size:129 final size:128
Alignment explanation
Indices: 13894269--13894571 Score: 283
Period size: 128 Copynumber: 2.4 Consensus size: 128
13894259 GGATACATCA
* *** *
13894269 AAGAAAATATACT-G-ACACACATAGTGTATCATC-AGATAAATTGAAGAAAATATACTAGCACA
1 AAGAAAATATACTAGCACACACA-A-TGCATCATCGA-ATAAACCAAAGAAAATACACTAGCACA
* * *
13894331 CACAATGTATCATCAGATAAA-CTGAAGAAAACATACTAGTACACACACTGTATCATCAG-ATAA
63 CACAATGCATCATCAGATAAATC-GAAG-AAACATACTAGCACACACACTGAATC-TCAGAATAA
13894394 ACTG
125 ACTG
** ** * *
13894398 AAGAAAATATACTAGCACACACAATGCATCATCGAATAAACCAAATCATCTACACTGGCACTCAC
1 AAGAAAATATACTAGCACACACAATGCATCATCGAATAAACCAAAGAAAATACACTAGCACACAC
* * * * * **
13894463 AATGCATCATCAGATAAATCGAAGAAATATATTGGCACACATAGTGAATCTTTGAATAAACTG
66 AATGCATCATCAGATAAATCGAAGAAACATACTAGCACACACACTGAATCTCAGAATAAACTG
* * * * *
13894526 AAGAAAATATACTAGCACACATAGTGCATCATTGGATATACCAAAG
1 AAGAAAATATACTAGCACACACAATGCATCATCGAATAAACCAAAG
13894572 GATCACCTAT
Statistics
Matches: 142, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
127 2 0.01
128 67 0.47
129 62 0.44
130 4 0.03
131 7 0.05
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (128 bp):
AAGAAAATATACTAGCACACACAATGCATCATCGAATAAACCAAAGAAAATACACTAGCACACAC
AATGCATCATCAGATAAATCGAAGAAACATACTAGCACACACACTGAATCTCAGAATAAACTG
Found at i:13894438 original size:43 final size:43
Alignment explanation
Indices: 13894186--13894557 Score: 285
Period size: 43 Copynumber: 8.7 Consensus size: 43
13894176 TACATCGAAA
* * * * *
13894186 AAAATATACTGGCACACATAATGCTTCATCGGATAAACCGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
* ** * * *
13894229 CATCTATACT-G-ACACACATAGTGCATCATCGGATACA-TCAAAG
1 AAAATATACTAGCACACACA-A-TGCATCATCAGATAAACT-GAAG
* *
13894272 AAAATATACT-G-ACACACATAGTGTATCATCAGATAAATTGAAG
1 AAAATATACTAGCACACACA-A-TGCATCATCAGATAAACTGAAG
*
13894315 AAAATATACTAGCACACACAATGTATCATCAGATAAACTGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
* * * *
13894358 AAAACATACTAGTACACACACTGTATCATCAGATAAACTGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
** *
13894401 AAAATATACTAGCACACACAATGCATCATC-GAATAAACCAAAT
1 AAAATATACTAGCACACACAATGCATCATCAG-ATAAACTGAAG
* ** * * *
13894444 CATCTACACTGGCACTCACAATGCATCATCAGATAAA-TCGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACT-GAAG
* * * * * **
13894487 -AAATATATTGGCACACATAGTGAATC-TTTGAATAAACTGAAG
1 AAAATATACTAGCACACACAATGCATCATCAG-ATAAACTGAAG
* *
13894529 AAAATATACTAGCACACATAGTGCATCAT
1 AAAATATACTAGCACACACAATGCATCAT
13894558 TGGATATACC
Statistics
Matches: 268, Mismatches: 48, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
41 8 0.03
42 30 0.11
43 218 0.81
44 5 0.02
45 7 0.03
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (43 bp):
AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
Found at i:13895185 original size:55 final size:55
Alignment explanation
Indices: 13895100--13895212 Score: 190
Period size: 55 Copynumber: 2.1 Consensus size: 55
13895090 AAATCTACAA
13895100 CATAGCTCAACTCATCATACATTTTCGAATATAAAACAATATAGTTAACTATCAG
1 CATAGCTCAACTCATCATACATTTTCGAATATAAAACAATATAGTTAACTATCAG
* * * *
13895155 CATAGCTCAATTTATCATACATTTTTGAATATAAAATAATATAGTTAACTATCAG
1 CATAGCTCAACTCATCATACATTTTCGAATATAAAACAATATAGTTAACTATCAG
13895210 CAT
1 CAT
13895213 CCAAATCCTA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (55 bp):
CATAGCTCAACTCATCATACATTTTCGAATATAAAACAATATAGTTAACTATCAG
Found at i:13902542 original size:13 final size:14
Alignment explanation
Indices: 13902516--13902551 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
13902506 AAGAATATCA
13902516 TTTAAAATTATTAT
1 TTTAAAATTATTAT
13902530 TTTAAAATT-TTAT
1 TTTAAAATTATTAT
13902543 TATTAAAAT
1 T-TTAAAAT
13902552 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTAAAATTATTAT
Found at i:13902557 original size:18 final size:18
Alignment explanation
Indices: 13902534--13902597 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
13902524 TATTATTTTA
13902534 AAATTTTATTATTAAAAT
1 AAATTTTATTATTAAAAT
*
13902552 AAATTTTAAATATT-AAAT
1 AAATTTT-ATTATTAAAAT
**
13902570 -AA-TTTATTAAAATAAAT
1 AAATTTTATTATTA-AAAT
*
13902587 AAATTATATTA
1 AAATTTTATTA
13902598 ATAATTTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
15 3 0.08
16 3 0.08
17 6 0.17
18 13 0.36
19 11 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATTTTATTATTAAAAT
Found at i:13902632 original size:14 final size:14
Alignment explanation
Indices: 13902544--13902635 Score: 50
Period size: 14 Copynumber: 6.6 Consensus size: 14
13902534 AAATTTTATT
13902544 ATTAAA-ATAAAT-
1 ATTAAATATAAATA
*
13902556 TTTAAATATTAAATA
1 ATTAAATA-TAAATA
* *
13902571 ATTTATTA-AAATA
1 ATTAAATATAAATA
*
13902584 AATAAATTATATTAATA
1 ATTAAA-TATA--AATA
* * *
13902601 ATT-TAT-TATATG
1 ATTAAATATAAATA
13902613 ATTAAATATAAATA
1 ATTAAATATAAATA
13902627 ATTAAATAT
1 ATTAAATAT
13902636 GCATCTTTAA
Statistics
Matches: 57, Mismatches: 14, Indels: 16
0.66 0.16 0.18
Matches are distributed among these distances:
12 10 0.18
13 11 0.19
14 22 0.39
15 7 0.12
16 1 0.02
17 6 0.11
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (14 bp):
ATTAAATATAAATA
Found at i:13903863 original size:5 final size:6
Alignment explanation
Indices: 13903849--13903873 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13903839 CTTTGTAACC
13903849 TTTTAT TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT T
13903874 GAAAGGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:13908669 original size:101 final size:101
Alignment explanation
Indices: 13908500--13908691 Score: 240
Period size: 101 Copynumber: 1.9 Consensus size: 101
13908490 ATTTTCCATC
* * * * * *
13908500 TGCAATGTCGGGGCAACAAGATTCGCCGTCGTGGCTTCAATCTGCTCCGCTACAATGCCAGAAAA
1 TGCAATGTCGAGGAAACAAGATTCACCGTCGTAGCTTCAATCTACTCCACTACAATGCCAGAAAA
* *
13908565 GTAAGATTCGTCGTTTCGGCTTCAATATTTTTAAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATATTTTTAAAT
* * * * * ***
13908601 TGCAATGTTGAGGAAACAAGATTCACCGTCGTAGCTTCAATCTATTCCATTACACTGCTAGGGGA
1 TGCAATGTCGAGGAAACAAGATTCACCGTCGTAGCTTCAATCTACTCCACTACAATGCCAGAAAA
13908666 GTAAGATTCGCCGTTGCGGCTTCAAT
66 GTAAGATTCGCCGTTGCGGCTTCAAT
13908692 CTGCTCCACT
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (101 bp):
TGCAATGTCGAGGAAACAAGATTCACCGTCGTAGCTTCAATCTACTCCACTACAATGCCAGAAAA
GTAAGATTCGCCGTTGCGGCTTCAATATTTTTAAAT
Found at i:13909005 original size:44 final size:44
Alignment explanation
Indices: 13908942--13909034 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
13908932 ATCTGTTATT
** *
13908942 TTCAACCTACTCCACTGCTGCTTAGGGAGATAGGATTCACAATC
1 TTCAACCTACTCCACTGCTGCCCAGGGAGATAGAATTCACAATC
* * *
13908986 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTACTCCACTGCTGCCCAGGGAGATAGAATTCACAATC
13909030 TTCAA
1 TTCAA
13909035 ATAGAATTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
TTCAACCTACTCCACTGCTGCCCAGGGAGATAGAATTCACAATC
Found at i:13909040 original size:20 final size:20
Alignment explanation
Indices: 13909015--13909054 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
13909005 GCCCAGGGAG
13909015 ATAGAATTCTCAATCTTCAA
1 ATAGAATTCTCAATCTTCAA
13909035 ATAGAATTCTCAATCTTCAA
1 ATAGAATTCTCAATCTTCAA
13909055 CCTATTCCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (20 bp):
ATAGAATTCTCAATCTTCAA
Found at i:13909082 original size:64 final size:64
Alignment explanation
Indices: 13908971--13909095 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 64
13908961 GCTTAGGGAG
* * * * *
13908971 ATAGGATTCACAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAA
1 ATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGAATTCACAATCTTCAA
* *
13909035 ATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTT
1 ATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGAATTCACAATCTT
13909096 TAACCTATTC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (64 bp):
ATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGAATTCACAATCTTCAA
Found at i:13909108 original size:44 final size:44
Alignment explanation
Indices: 13909035--13909127 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
13909025 CAATCTTCAA
* * *
13909035 ATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAG
1 ATAGGATTCACAATCTTCAACCTATTCCACTACTAACCAGGGAG
* *
13909079 ATAGGATTCACAATCTTTAACCTATTCCACTACTAACTAGGGAG
1 ATAGGATTCACAATCTTCAACCTATTCCACTACTAACCAGGGAG
13909123 ATAGG
1 ATAGG
13909128 GCTGGGGTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (44 bp):
ATAGGATTCACAATCTTCAACCTATTCCACTACTAACCAGGGAG
Found at i:13909244 original size:88 final size:88
Alignment explanation
Indices: 13909127--13909532 Score: 560
Period size: 88 Copynumber: 4.6 Consensus size: 88
13909117 AGGGAGATAG
* *
13909127 GGCTGGGGTCATCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
*
13909192 TCCGCTGCAACCCAGGGAAGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * *
13909215 GGCTGGTGTCTTCGATTTGCTTCGATGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
* **
13909280 TCCGCTGCAACCTAATGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
13909303 GACTGGTGTCTTGGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTCTTAGCCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
* *
13909368 TCCGCTACAACCCAGTGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * * * * *
13909391 GGCTGGTGTCTTCGATCTGATTCGCTATTGGTGCAGGAAAGAAAGATCTGCTAGTTTTAGCCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
13909456 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * *
13909479 GACTGGTGTCTTCAATTTGCTTCGTTGTCGGTGCAGGAAGGCAAGGTCTGCTAT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
13909533 CTTCGATCTA
Statistics
Matches: 276, Mismatches: 42, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 276 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:13909580 original size:44 final size:44
Alignment explanation
Indices: 13909513--13910067 Score: 430
Period size: 44 Copynumber: 12.5 Consensus size: 44
13909503 TTGTCGGTGC
* * *
13909513 AGGAAGGCAAGGTCTGCTATCTTCGATCTACTTCATGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATAT
* * *
13909557 ATGAAGACAAGATCTGCTTTCTTCAATCTACTTC--GCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCA--A-TAT
* * *
13909602 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCACTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-TGCCAATAT
* * * * *
13909646 AGGAAGATAGGATCTGCCATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATAT
** * * * ** *
13909690 ATAAAGACAAGATCTACTTTCTTCGATCTACTTAACCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-TGCCAATAT
* * * *
13909735 AGTAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ATGCCAATAT
* * * * * *
13909779 AAGAAGACAGGATTTGCTATCTTTGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATAT
* * *
13909823 ATGAAGACAAAATCTGCTTTCTTCGATCTACTTC--GCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCA--A-TAT
* * * * *
13909868 GGGAAGAGAAGATCTGC-ATATTCGATCCACTTTGC-TACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CATGCCAATAT
* * * *
13909912 AGGAAGACAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATAT
* * * *
13909956 ATGAAGACAAAATTTGCTTTCTTCGATCTACTTC--GCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCA--A-TAT
* * *
13910001 AGGAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ATGCCAATAT
*
13910045 AGGAAGACAGGATCTGCTATCTT
1 AGGAAGACAAGATCTGCTATCTT
13910068 TACTGATCTA
Statistics
Matches: 399, Mismatches: 87, Indels: 49
0.75 0.16 0.09
Matches are distributed among these distances:
42 12 0.03
43 1 0.00
44 258 0.65
45 118 0.30
46 1 0.00
47 9 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (44 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATAT
Found at i:13909607 original size:89 final size:89
Alignment explanation
Indices: 13909513--13910067 Score: 512
Period size: 89 Copynumber: 6.3 Consensus size: 89
13909503 TTGTCGGTGC
* * * * * *
13909513 AGGAAGGCAAGGTCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAAGATCTGCTATC
* *
13909578 TTCAATCTACTTCGCCACCAGTAT
66 TTCGATCTACTTCGCCACCAATAT
* * * * *
13909602 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCACTACCAATATAGGAAGATAGGATCTGCCAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGACAAGATCTGCTAT
* * *
13909666 CTTCGATCTACTTC-ACGCCAATAC
65 CTTCGATCTACTTCGCCACCAATAT
** * * * * * *
13909690 ATAAAGACAAGATCTACTTTCTTCGATCTACTTAACCACCAGTATAGTAAGACAAGATCTGC-AT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGACAAGATCTGCTAT
* *
13909754 CTTCGATCCACTTCGCTACCAATAT
65 CTTCGATCTACTTCGCCACCAATAT
* * * * ** * * * *
13909779 AAGAAGACAGGATTTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAAGATCTGCTATC
*
13909844 TTCGATCTACTTCGCCACCAGTAT
66 TTCGATCTACTTCGCCACCAATAT
* * * * *
13909868 GGGAAGAGAAGATCTGC-ATATTCGATCCACTTTGC-TACCAATATAGGAAGACAGGATCTGCTA
1 AGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CATACCAATATAGGAAGACAAGATCTGCTA
* * * *
13909931 CCTTCGATCTACTTC-ACGCCAATAC
64 TCTTCGATCTACTTCGCCACCAATAT
* * * * ** *
13909956 ATGAAGACAAAATTTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATCTGC-AT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGACAAGATCTGCTAT
* *
13910020 CTTCGATCCACTTCGCTACCAATAT
65 CTTCGATCTACTTCGCCACCAATAT
*
13910045 AGGAAGACAGGATCTGCTATCTT
1 AGGAAGACAAGATCTGCTATCTT
13910068 TACTGATCTA
Statistics
Matches: 363, Mismatches: 93, Indels: 20
0.76 0.20 0.04
Matches are distributed among these distances:
87 1 0.00
88 114 0.31
89 247 0.68
90 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (89 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAAGATCTGCTATC
TTCGATCTACTTCGCCACCAATAT
Found at i:13909672 original size:133 final size:133
Alignment explanation
Indices: 13909525--13910067 Score: 888
Period size: 133 Copynumber: 4.1 Consensus size: 133
13909515 GAAGGCAAGG
* * *
13909525 TCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCAATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
* * *
13909590 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCACTACCAATATAGGAAGATA
66 CGCCACCAGTATAGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
13909655 GGA
131 GGA
* * * *
13909658 TCTGCCATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATCTACTTTCTTCGATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
** * *
13909723 AACCACCAGTATAGTAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAGAAGACA
66 CGCCACCAGTATAGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
13909788 GGA
131 GGA
* *
13909791 TTTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
* * * *
13909856 CGCCACCAGTATGGGAAGAGAAGATCTGCATATTCGATCCACTTTGCTACCAATATAGGAAGACA
66 CGCCACCAGTATAGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
13909921 GGA
131 GGA
* *
13909924 TCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAAATTTGCTTTCTTCGATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
13909989 CGCCACCAGTATAGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
66 CGCCACCAGTATAGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
13910054 GGA
131 GGA
13910057 TCTGCTATCTT
1 TCTGCTATCTT
13910068 TACTGATCTA
Statistics
Matches: 375, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 375 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (133 bp):
TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
CGCCACCAGTATAGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
GGA
Found at i:13916507 original size:19 final size:19
Alignment explanation
Indices: 13916452--13916528 Score: 82
Period size: 19 Copynumber: 3.8 Consensus size: 19
13916442 AAATTAAATC
*
13916452 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
* *
13916472 TCTTCTAAAATTGCATATCATA
1 ---TCTAAGATTACATATCATA
13916494 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
13916513 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
13916529 CTTGAAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 32 0.67
22 7 0.15
23 9 0.19
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:13916525 original size:38 final size:40
Alignment explanation
Indices: 13916452--13916528 Score: 104
Period size: 38 Copynumber: 1.9 Consensus size: 40
13916442 AAATTAAATC
13916452 TCTAAGATTACAAAATCATATCTTCTAAAATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAAATTGCATATCATA
* *
13916494 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAAATTGCATATC
13916529 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 15 0.45
41 7 0.21
42 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAAATTGCATATCATA
Found at i:13923432 original size:27 final size:28
Alignment explanation
Indices: 13923380--13923432 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
13923370 AAAATAATTA
*
13923380 AAATTAAATATGTTCATAATTTAAGTGC
1 AAATTAAATATGTTCATAATTAAAGTGC
* *
13923408 AAATTAATTAT-TTTATAATTAAAGT
1 AAATTAAATATGTTCATAATTAAAGT
13923433 ATGAATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (28 bp):
AAATTAAATATGTTCATAATTAAAGTGC
Found at i:13927099 original size:18 final size:18
Alignment explanation
Indices: 13927073--13927108 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13927063 ATATATTTAT
* *
13927073 TTTTTAAATTTTTTTAAA
1 TTTTAAAATATTTTTAAA
13927091 TTTTAAAATATTTTTAAA
1 TTTTAAAATATTTTTAAA
13927109 ATAATTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTAAAATATTTTTAAA
Found at i:13927130 original size:43 final size:43
Alignment explanation
Indices: 13927061--13927160 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
13927051 CTGATATAAT
13927061 AAATATATTTATTTTTTAAATTTTTTTAAATTTTAAAATATTTTTA
1 AAATA-ATTT-TTTTTT-AATTTTTTTAAATTTTAAAATATTTTTA
*
13927107 AAATAATTTTTTTTT-ATTATTTTTTAATTTTAAAATATTTTTA
1 AAATAATTTTTTTTTAATT-TTTTTAAATTTTAAAATATTTTTA
*
13927150 AAATACTTTTT
1 AAATAATTTTT
13927161 AATTTTTAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
42 3 0.06
43 33 0.65
44 6 0.12
45 4 0.08
46 5 0.10
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (43 bp):
AAATAATTTTTTTTTAATTTTTTTAAATTTTAAAATATTTTTA
Found at i:13927148 original size:11 final size:12
Alignment explanation
Indices: 13927134--13927162 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
13927124 TATTTTTTAA
13927134 TTTTAAAATA-T
1 TTTTAAAATACT
13927145 TTTTAAAATACT
1 TTTTAAAATACT
13927157 TTTTAA
1 TTTTAA
13927163 TTTTTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTTAAAATACT
Found at i:13927165 original size:19 final size:19
Alignment explanation
Indices: 13927143--13927179 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
13927133 ATTTTAAAAT
*
13927143 ATTTTTAAAATACTTTTTA
1 ATTTTTAAAATAATTTTTA
13927162 ATTTTTAAAATAATTTTT
1 ATTTTTAAAATAATTTTT
13927180 TTTGTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTTTAAAATAATTTTTA
Found at i:13930724 original size:5 final size:5
Alignment explanation
Indices: 13930714--13930759 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
13930704 ATATTAATGA
* *
13930714 AAAAT AAAAT AAAAT AAAAT AAAACTT AAAAT AATAT GAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAA--T AAAAT AAAAT AAAAT AAAA
13930760 AATACAAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
5 30 0.86
7 5 0.14
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:13930745 original size:22 final size:22
Alignment explanation
Indices: 13930718--13930759 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
13930708 TAATGAAAAA
13930718 TAAAATAAAATAAAATAAAACT
1 TAAAATAAAATAAAATAAAACT
* *
13930740 TAAAATAATATGAAATAAAA
1 TAAAATAAAATAAAATAAAA
13930760 AATACAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (22 bp):
TAAAATAAAATAAAATAAAACT
Found at i:13931415 original size:21 final size:23
Alignment explanation
Indices: 13931372--13931416 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
13931362 TTCTGGCAAT
*
13931372 AAATTCTTAGTTTTGTGTCTTAA
1 AAATTCTTAGTTTTGTATCTTAA
*
13931395 AAATT-TTAGTTTTTTAT-TTAA
1 AAATTCTTAGTTTTGTATCTTAA
13931416 A
1 A
13931417 TTTATTCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (23 bp):
AAATTCTTAGTTTTGTATCTTAA
Found at i:13953172 original size:56 final size:56
Alignment explanation
Indices: 13953091--13953203 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
13953081 GAGGGGGTGT
* *
13953091 TAGGATATTATTATGGGATATTATCTATTAGCAATTTTATTCATAATGAGATGTTA
1 TAGGATATTATTATGGGATATTATCTATTAGCAATTTGATTCATAATGAGATATTA
* * *
13953147 TAGGATATTATTATGGGATATTATCTCTTAGCAATTTGATTCCTAATGGGATATTA
1 TAGGATATTATTATGGGATATTATCTATTAGCAATTTGATTCATAATGAGATATTA
13953203 T
1 T
13953204 TGTTTAGCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (56 bp):
TAGGATATTATTATGGGATATTATCTATTAGCAATTTGATTCATAATGAGATATTA
Found at i:13953201 original size:33 final size:33
Alignment explanation
Indices: 13953159--13953224 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
13953149 GGATATTATT
13953159 ATGGGATATTATCT-CTTAGCAATTTGATTCCTA
1 ATGGGATATTAT-TGCTTAGCAATTTGATTCCTA
*
13953192 ATGGGATATTATTGTTTAGCAATTTGATTCCTA
1 ATGGGATATTATTGCTTAGCAATTTGATTCCTA
13953225 CGTATCTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (33 bp):
ATGGGATATTATTGCTTAGCAATTTGATTCCTA
Found at i:13959876 original size:62 final size:62
Alignment explanation
Indices: 13959744--13959892 Score: 142
Period size: 62 Copynumber: 2.4 Consensus size: 62
13959734 TTTGAATTGG
* * * *
13959744 AGGTACACGGGCATCTGTCTAGGTCGTGGAATTCACTATTTGTATTTTGGGTCACATGGGCT
1 AGGTACACGGGCATCTGTCTAGGCCGTGGAACTCACTATTTGTATTATGGGTCACACGGGCT
* * * * *
13959806 AGGGACACGGGCTTGTGTCTAGGCCGTGTAACTCACTGTTT-TAGATTAT-GGTCACACGGG-T
1 AGGTACACGGGCATCTGTCTAGGCCGTGGAACTCACTATTTGT--ATTATGGGTCACACGGGCT
* * *
13959867 CAGGTACACGAGCATTTTTCTAGGCC
1 -AGGTACACGGGCATCTGTCTAGGCC
13959893 ATGTGAGGGG
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
61 2 0.03
62 64 0.91
63 4 0.06
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (62 bp):
AGGTACACGGGCATCTGTCTAGGCCGTGGAACTCACTATTTGTATTATGGGTCACACGGGCT
Found at i:13962737 original size:173 final size:173
Alignment explanation
Indices: 13962448--13962793 Score: 638
Period size: 173 Copynumber: 2.0 Consensus size: 173
13962438 CGCCTGAGGT
13962448 CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
1 CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
13962513 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
66 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
* * *
13962578 TCTCCTTATTTTACCTTGCATCCGTGTTTTGCACACGGCCTGA
131 TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
* *
13962621 CACGACAAAGTTAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGG
1 CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
*
13962686 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATTACACGGCCTCGCACACGACCATG
66 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
13962751 TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
131 TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
13962794 AAACACAACC
Statistics
Matches: 167, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
173 167 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (173 bp):
CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
Found at i:13964195 original size:13 final size:13
Alignment explanation
Indices: 13964177--13964201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13964167 TTCACCAATG
13964177 ATTTATTATTATT
1 ATTTATTATTATT
13964190 ATTTATTATTAT
1 ATTTATTATTAT
13964202 GATTATCGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTATTATTATT
Found at i:13967099 original size:15 final size:16
Alignment explanation
Indices: 13967079--13967108 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13967069 GTCAATATTT
13967079 AATT-AATTTTAAAAA
1 AATTAAATTTTAAAAA
13967094 AATTAAATTTTAAAA
1 AATTAAATTTTAAAA
13967109 TTTTAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATTAAATTTTAAAAA
Found at i:13967168 original size:10 final size:9
Alignment explanation
Indices: 13967101--13967164 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 9
13967091 AAAAATTAAA
13967101 TTTTAAAA-
1 TTTTAAAAT
13967109 TTTTAAAAT
1 TTTTAAAAT
**
13967118 CATTAAAAT
1 TTTTAAAAT
13967127 TATTTGAAATACT
1 T-TTT-AAA-A-T
*
13967140 TTTTAATA-
1 TTTTAAAAT
13967148 TTTTAAAAT
1 TTTTAAAAT
13967157 TTTTAAAA
1 TTTTAAAA
13967165 ATTTAATTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
8 15 0.34
9 15 0.34
10 3 0.07
11 5 0.11
12 4 0.09
13 2 0.05
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:13967743 original size:21 final size:21
Alignment explanation
Indices: 13967717--13967762 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
13967707 AAAATTTCAA
*
13967717 AAAAAAATCAAAATAA-TTTT
1 AAAAAAATAAAAATAACTTTT
*
13967737 CAAAAAATTAAAAATAACTTTT
1 -AAAAAAATAAAAATAACTTTT
13967759 AAAA
1 AAAA
13967763 TTCAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAAAATAAAAATAACTTTT
Found at i:13975508 original size:18 final size:19
Alignment explanation
Indices: 13975481--13975522 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
13975471 ACACAATGAG
13975481 AAAG-AAAGAG-AAAGTAA
1 AAAGAAAAGAGAAAAGTAA
13975498 AAAGAAAAGAGAAAAGTAA
1 AAAGAAAAGAGAAAAGTAA
13975517 ACAAGA
1 A-AAGA
13975523 TTGAGTCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.18
18 6 0.27
19 8 0.36
20 4 0.18
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.05
Consensus pattern (19 bp):
AAAGAAAAGAGAAAAGTAA
Found at i:13977463 original size:8 final size:8
Alignment explanation
Indices: 13977450--13977474 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
13977440 CCAAGAGAAT
13977450 AATTAAAC
1 AATTAAAC
13977458 AATTAAAC
1 AATTAAAC
13977466 AATTAAAC
1 AATTAAAC
13977474 A
1 A
13977475 CAACCCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (8 bp):
AATTAAAC
Found at i:13979672 original size:41 final size:40
Alignment explanation
Indices: 13979627--13979728 Score: 123
Period size: 41 Copynumber: 2.5 Consensus size: 40
13979617 TGATTCAGTA
*
13979627 CACCGGCACTTAGCCTGCTAGACATATAGTTTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * * *
13979668 CACCGGCATTAAGCCTGCTAGACATTTTGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
13979709 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
13979729 AGCTCTAAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 2 0.04
41 49 0.92
42 2 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:13985238 original size:23 final size:23
Alignment explanation
Indices: 13985203--13985246 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
13985193 CCTTTTTCAC
* *
13985203 TTTTGTTTTATTATAAAATAACT
1 TTTTATTTAATTATAAAATAACT
*
13985226 TTTTATTTAATTATAATATAA
1 TTTTATTTAATTATAAAATAA
13985247 AATTAAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTTATTTAATTATAAAATAACT
Found at i:13986420 original size:22 final size:23
Alignment explanation
Indices: 13986379--13986421 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
13986369 TTGTTATGAC
*
13986379 AATGCAATATTTTCTGAAAATAT
1 AATGCAATATTTTCTAAAAATAT
*
13986402 AATGC-ATATTTTTTAAAAAT
1 AATGCAATATTTTCTAAAAAT
13986422 TTCCTACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (23 bp):
AATGCAATATTTTCTAAAAATAT
Found at i:13988751 original size:87 final size:88
Alignment explanation
Indices: 13988592--13988779 Score: 247
Period size: 87 Copynumber: 2.1 Consensus size: 88
13988582 GGCTTAAGAG
* *
13988592 TTTAAAAAGCCCTCAAACTTTTTCAAAACAAAGCAATTAAGCCCCTGCTTTTTTTTTGCACTCAA
1 TTTAAAAAGCCATCAAACTTTTTCAAAAAAAAGCAATTAAG-CCC-GCTTTTTTTTTGCACTCAA
**
13988657 TTAGGTACTTGAACTTTCAAAATGC
64 TTAGGTACTTGAACTGCCAAAATGC
*
13988682 TTTAAAAATGCCATCAAAGTTTTTCAAAAAAAAAGCAATTAAG-CC-C-TTTTTTTTGCACTCAA
1 TTTAAAAA-GCCATCAAACTTTTTC-AAAAAAAAGCAATTAAGCCCGCTTTTTTTTTGCACTCAA
* *
13988744 TTGGGTACTTGAACTGCCAAAGTGC
64 TTAGGTACTTGAACTGCCAAAATGC
*
13988769 TTCAAAAAGCC
1 TTTAAAAAGCC
13988780 CCTTTAACAG
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
86 3 0.03
87 44 0.50
88 1 0.01
90 10 0.11
91 14 0.16
92 16 0.18
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (88 bp):
TTTAAAAAGCCATCAAACTTTTTCAAAAAAAAGCAATTAAGCCCGCTTTTTTTTTGCACTCAATT
AGGTACTTGAACTGCCAAAATGC
Found at i:13988922 original size:9 final size:9
Alignment explanation
Indices: 13988900--13988999 Score: 60
Period size: 9 Copynumber: 10.7 Consensus size: 9
13988890 AAAAATAAAA
*
13988900 ATAAAAATAA
1 ATAAAAAT-T
13988910 ATAAAAATT
1 ATAAAAATT
13988919 ATAAAAA-T
1 ATAAAAATT
*
13988927 AT-TAAATT
1 ATAAAAATT
* *
13988935 TTAATTAAAAT
1 ATAA--AAATT
13988946 ATAAAAATT
1 ATAAAAATT
* *
13988955 ACAAAAACCGT
1 ATAAAAA--TT
*
13988966 AAAAAAATT
1 ATAAAAATT
13988975 ATAAAAATTT
1 ATAAAAA-TT
13988985 ATAAAAATT
1 ATAAAAATT
*
13988994 GTAAAA
1 ATAAAA
13989000 TAAAATAAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 15
0.71 0.13 0.15
Matches are distributed among these distances:
7 3 0.04
8 5 0.07
9 31 0.44
10 17 0.24
11 14 0.20
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (9 bp):
ATAAAAATT
Found at i:13988924 original size:19 final size:18
Alignment explanation
Indices: 13988900--13989021 Score: 77
Period size: 19 Copynumber: 6.5 Consensus size: 18
13988890 AAAAATAAAA
13988900 ATAAAAATAAATAAAAATT
1 ATAAAAAT-AATAAAAATT
* **
13988919 ATAAAAATATTAAATTTT
1 ATAAAAATAATAAAAATT
*
13988937 AATTAAAAT-ATAAAAATT
1 -ATAAAAATAATAAAAATT
*
13988955 ACAAAAACCGTAA-AAAAATT
1 ATAAAAA---TAATAAAAATT
*
13988975 ATAAAAATTTATAAAAATT
1 ATAAAAA-TAATAAAAATT
* * *
13988994 GTAAAATAAAATAAAATTT
1 ATAAAA-ATAATAAAAATT
*
13989013 ATAGAAATA
1 ATAAAAATA
13989022 TAGGAAAAAA
Statistics
Matches: 77, Mismatches: 19, Indels: 15
0.69 0.17 0.14
Matches are distributed among these distances:
17 5 0.06
18 17 0.22
19 39 0.51
20 15 0.19
21 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
ATAAAAATAATAAAAATT
Found at i:13988930 original size:11 final size:11
Alignment explanation
Indices: 13988879--13988928 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 11
13988869 TGACATTTGA
*
13988879 AAAAATATGAT
1 AAAAATATAAT
*
13988890 AAAAATAAAAAT
1 AAAAAT-ATAAT
13988902 AAAAATA-AAT
1 AAAAATATAAT
13988912 AAAAAT-T-AT
1 AAAAATATAAT
13988921 AAAAATAT
1 AAAAATAT
13988929 TAAATTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
9 8 0.24
10 10 0.29
11 7 0.21
12 9 0.26
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (11 bp):
AAAAATATAAT
Found at i:13988990 original size:29 final size:29
Alignment explanation
Indices: 13988941--13989070 Score: 106
Period size: 29 Copynumber: 4.4 Consensus size: 29
13988931 AATTTTAATT
* *
13988941 AAAATATAAAAA-TTACAAAAACCGTAAA
1 AAAATATAAAAATTTATAAAAATCGTAAA
*
13988969 AAAATTATAAAAATTTATAAAAATTGTAAA
1 AAAA-TATAAAAATTTATAAAAATCGTAAA
* *
13988999 ATAAA-AT-AAAATTTATAGAAATATAGGAAAA
1 A-AAATATAAAAATTTATA-AAA-AT-CGTAAA
* *
13989030 AAAATATAAAATTTTAT-AAAGTCGTAAGA
1 AAAATATAAAAATTTATAAAAATCGTAA-A
*
13989059 AAATTATAAAAA
1 AAAATATAAAAA
13989071 ATGTAAAGAA
Statistics
Matches: 82, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
28 17 0.21
29 25 0.30
30 22 0.27
31 10 0.12
32 8 0.10
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (29 bp):
AAAATATAAAAATTTATAAAAATCGTAAA
Found at i:13989108 original size:19 final size:19
Alignment explanation
Indices: 13989053--13989110 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
13989043 TTATAAAGTC
**
13989053 GTAAGAAAATTATAAAAAAT
1 GTAA-AAAATTATAAAATTT
13989073 GTAAAGAAA-TATAAAATTT
1 GTAAA-AAATTATAAAATTT
13989092 GTAAAAAATTATAAAATTT
1 GTAAAAAATTATAAAATTT
13989111 ATTGTACCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 3 0.09
19 24 0.71
20 7 0.21
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (19 bp):
GTAAAAAATTATAAAATTT
Found at i:13989323 original size:9 final size:9
Alignment explanation
Indices: 13989309--13989433 Score: 94
Period size: 9 Copynumber: 13.4 Consensus size: 9
13989299 TTATAATTCA
*
13989309 TTTTATGAT
1 TTTTATAAT
*
13989318 TTTTATAAA
1 TTTTATAAT
*
13989327 TTTTACAAATT
1 TTTTA-TAA-T
13989338 TTTTATAAT
1 TTTTATAAT
*
13989347 TTCTATAATT
1 TTTTATAA-T
13989357 TTTTATAAT
1 TTTTATAAT
13989366 TTTTAT-AT
1 TTTTATAAT
*
13989374 TTTTATTAAAA
1 TTTTA-T-AAT
*
13989385 TTTAATAAT
1 TTTTATAAT
*
13989394 TTTTATAAC
1 TTTTATAAT
*
13989403 TTTTATTGAT
1 TTTTA-TAAT
13989413 TTTTAT--T
1 TTTTATAAT
13989420 TTTTATAAAT
1 TTTTAT-AAT
13989430 TTTT
1 TTTT
13989434 TACCACATGT
Statistics
Matches: 92, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
7 7 0.08
8 7 0.08
9 43 0.47
10 25 0.27
11 10 0.11
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:13989340 original size:19 final size:19
Alignment explanation
Indices: 13989316--13989433 Score: 86
Period size: 19 Copynumber: 6.3 Consensus size: 19
13989306 TCATTTTATG
*
13989316 ATTTTTATAAATTTTACAA
1 ATTTTTATAAATTTTATAA
13989335 ATTTTT-TATAATTTCTATAA
1 ATTTTTATA-AATTT-TATAA
* *
13989355 TTTTTTAT-AATTTT-TAT
1 ATTTTTATAAATTTTATAA
*
13989372 ATTTTTATTAAAATTTA-ATA
1 ATTTTTA-TAAATTTTATA-A
* **
13989392 ATTTTTATAACTTTTATTG
1 ATTTTTATAAATTTTATAA
*
13989411 ATTTTTAT--TTTTTATAA
1 ATTTTTATAAATTTTATAA
13989428 ATTTTT
1 ATTTTT
13989434 TACCACATGT
Statistics
Matches: 78, Mismatches: 13, Indels: 18
0.72 0.12 0.17
Matches are distributed among these distances:
17 20 0.26
18 4 0.05
19 37 0.47
20 16 0.21
21 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.64
Consensus pattern (19 bp):
ATTTTTATAAATTTTATAA
Found at i:13989368 original size:28 final size:29
Alignment explanation
Indices: 13989337--13989409 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
13989327 TTTTACAAAT
** *
13989337 TTTTTATAATTTCTA-TAATTTTTTATAA
1 TTTTTATAATTTCTATTAAAATTTAATAA
*
13989365 TTTTTAT-ATTTTTATTAAAATTTAATAA
1 TTTTTATAATTTCTATTAAAATTTAATAA
13989393 TTTTTATAACTTT-TATT
1 TTTTTATAA-TTTCTATT
13989410 GATTTTTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
27 6 0.16
28 24 0.63
29 5 0.13
30 3 0.08
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (29 bp):
TTTTTATAATTTCTATTAAAATTTAATAA
Found at i:13989398 original size:10 final size:10
Alignment explanation
Indices: 13989316--13989417 Score: 63
Period size: 10 Copynumber: 10.7 Consensus size: 10
13989306 TCATTTTATG
13989316 ATTTTT-ATA
1 ATTTTTAATA
*
13989325 AATTTTACA-A
1 ATTTTTA-ATA
*
13989335 ATTTTTTATA
1 ATTTTTAATA
*
13989345 ATTTCT-ATA
1 ATTTTTAATA
*
13989354 ATTTTTTATA
1 ATTTTTAATA
13989364 ATTTTT-AT-
1 ATTTTTAATA
*
13989372 ATTTTTATTA
1 ATTTTTAATA
**
13989382 AAATTTAATA
1 ATTTTTAATA
13989392 ATTTTT-ATA
1 ATTTTTAATA
* * *
13989401 ACTTTTATTG
1 ATTTTTAATA
13989411 ATTTTTA
1 ATTTTTA
13989418 TTTTTTATAA
Statistics
Matches: 71, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
8 6 0.08
9 25 0.35
10 39 0.55
11 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:13989707 original size:90 final size:91
Alignment explanation
Indices: 13989541--13989713 Score: 242
Period size: 90 Copynumber: 1.9 Consensus size: 91
13989531 TAAAAAGGCC
* * * *
13989541 TTTTTGATGCATTTTGACAATTGAAGTACCCAATTGAGTGCACAAAAAAGGCAGGGGCGTAATTG
1 TTTTTGATGCATTTTGACAATTCAAGTACCAAATTAAGTGCACAAAAAAAGCAGGGGCGTAATTG
*
13989606 CTTTTTTTGAAAAAGTTTAAAGGTAT
66 CTTTTTATGAAAAAGTTTAAAGGTAT
* * * *
13989632 TTTTTTATGCATTTTGA-AAGTTCAAGTACCAAATTAAGTGCA-AAAAAAAGTAGGGGCTTAGTT
1 TTTTTGATGCATTTTGACAA-TTCAAGTACCAAATTAAGTGCACAAAAAAAGCAGGGGCGTAATT
13989695 GCTTTTTATGAAAAAGTTT
65 GCTTTTTATGAAAAAGTTT
13989714 GAAGACTTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
90 37 0.51
91 35 0.49
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (91 bp):
TTTTTGATGCATTTTGACAATTCAAGTACCAAATTAAGTGCACAAAAAAAGCAGGGGCGTAATTG
CTTTTTATGAAAAAGTTTAAAGGTAT
Found at i:13996754 original size:50 final size:50
Alignment explanation
Indices: 13996642--13996938 Score: 292
Period size: 50 Copynumber: 5.8 Consensus size: 50
13996632 ATTTGGGTAA
* *
13996642 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* * *
13996698 AGAGGTCTCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
13996748 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
13996798 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * * * *
13996848 AGAACTCCTATGTAAGACCATATCTGGGATATGACATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * * *
13996897 AAACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13996939 TGTTATATTC
Statistics
Matches: 204, Mismatches: 36, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
49 35 0.17
50 127 0.62
53 3 0.01
55 1 0.00
56 38 0.19
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:14001149 original size:42 final size:42
Alignment explanation
Indices: 14001052--14001151 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
14001042 AGGAGATTAC
* * *
14001052 ATAAACTACCATAAATATGTGGATAAACCACTAGAATTGCAG
1 ATAAACTGCCAGAAATATGTGGATAAACCACGAGAATTGCAG
*
14001094 ATAGACTGCCAGAAATATGTGGATGAAA-CACCGA-AATTGCAG
1 ATAAACTGCCAGAAATATGTGGAT-AAACCA-CGAGAATTGCAG
* *
14001136 ATAAATTGTCAGAAAT
1 ATAAACTGCCAGAAAT
14001152 TCCTCCTTAC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 44 0.90
43 5 0.10
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (42 bp):
ATAAACTGCCAGAAATATGTGGATAAACCACGAGAATTGCAG
Found at i:14007384 original size:34 final size:34
Alignment explanation
Indices: 14007345--14007411 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
14007335 AACTTGTTTA
14007345 GAAGCCTTACTTTGTAAACAATACATAGTTATTC
1 GAAGCCTTACTTTGTAAACAATACATAGTTATTC
14007379 GAAGCCTTACTTTGTAAACAATACATAGTTATT
1 GAAGCCTTACTTTGTAAACAATACATAGTTATT
14007412 ATTTCTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (34 bp):
GAAGCCTTACTTTGTAAACAATACATAGTTATTC
Found at i:14009564 original size:28 final size:28
Alignment explanation
Indices: 14009511--14009569 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
14009501 TTGTCTACAT
* * *
14009511 TTGGATGTCGTTTTCCCAAGTTGCTTTC
1 TTGGATGTCATTTTCCCAAGTAGCTTCC
*
14009539 TTGGATGTCATTTTCCCACGTAGCTTCC
1 TTGGATGTCATTTTCCCAAGTAGCTTCC
14009567 TTG
1 TTG
14009570 ATATTTTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (28 bp):
TTGGATGTCATTTTCCCAAGTAGCTTCC
Found at i:14010313 original size:16 final size:17
Alignment explanation
Indices: 14010283--14010314 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14010273 TTTAAATCGT
14010283 TTGTAAAAAACATATAC
1 TTGTAAAAAACATATAC
14010300 TTGTAAAAAA-ATATA
1 TTGTAAAAAACATATA
14010315 TTCTGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (17 bp):
TTGTAAAAAACATATAC
Found at i:14020628 original size:20 final size:20
Alignment explanation
Indices: 14020587--14020628 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
14020577 TCATAACATA
* *
14020587 TCTCTCATTCTATATTCTTT
1 TCTCTCATTCCATATTCCTT
14020607 TCTCTCATTCCAT-TTCCCTT
1 TCTCTCATTCCATATT-CCTT
14020627 TC
1 TC
14020629 CTTTTCCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.12, C:0.33, G:0.00, T:0.55
Consensus pattern (20 bp):
TCTCTCATTCCATATTCCTT
Found at i:14024735 original size:12 final size:11
Alignment explanation
Indices: 14024712--14024753 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
14024702 TTACAATAAC
14024712 AAACAA-ATTAA
1 AAACAATATT-A
14024723 AAACAATATTA
1 AAACAATATTA
*
14024734 AAACAATTCTTA
1 AAACAA-TATTA
14024746 AAACAATA
1 AAACAATA
14024754 CACAGATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.52
12 13 0.48
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (11 bp):
AAACAATATTA
Found at i:14024833 original size:22 final size:22
Alignment explanation
Indices: 14024788--14024834 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
14024778 GTGGTTATAT
*
14024788 TAAGATAGTAACAACTAACAAG
1 TAAGATAGTAACAACTAAAAAG
*
14024810 TAAGA-AGTTACAACTAAAATAG
1 TAAGATAGTAACAACTAAAA-AG
14024832 TAA
1 TAA
14024835 CAAAACTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (22 bp):
TAAGATAGTAACAACTAAAAAG
Found at i:14029168 original size:44 final size:45
Alignment explanation
Indices: 14029103--14029215 Score: 156
Period size: 44 Copynumber: 2.5 Consensus size: 45
14029093 TACTCCAGAA
*
14029103 ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATC-TGATAAAG
1 ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAATAAAG
* * * * *
14029147 ATGAGTAAGACTATAGCTGAAAGATGCTATGGCGTCATAATACAT
1 ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAATAAAG
*
14029192 ATGAGTAAGGCCATAGTTGAAAGA
1 ATGAGTAAGACCATAGTTGAAAGA
14029216 AACTATGACA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 33 0.56
45 26 0.44
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.25
Consensus pattern (45 bp):
ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAATAAAG
Found at i:14030639 original size:102 final size:102
Alignment explanation
Indices: 14030463--14030668 Score: 349
Period size: 102 Copynumber: 2.0 Consensus size: 102
14030453 TTGAGAACAT
* *
14030463 GATTCAAAGGTGTTTTCCATATATTTAGGTTTTTGTATCATTTGGAACCTAGACTCAAAGAGTGG
1 GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAAACTCAAAGAGTGG
14030528 GTCGAGTACAAGTGTTACAAATCCTTTCCAAATAAAA
66 GTCGAGTACAAGTGTTACAAATCCTTTCCAAATAAAA
**
14030565 GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAAACTCGGAGAGTGG
1 GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAAACTCAAAGAGTGG
* * *
14030630 GTTGGGTACAAGTGTTACAAATTCTTTCCAAATAAAA
66 GTCGAGTACAAGTGTTACAAATCCTTTCCAAATAAAA
14030667 GA
1 GA
14030669 AGGTTTGTTA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (102 bp):
GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAAACTCAAAGAGTGG
GTCGAGTACAAGTGTTACAAATCCTTTCCAAATAAAA
Found at i:14033609 original size:16 final size:18
Alignment explanation
Indices: 14033582--14033614 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14033572 TAGAATTGAG
14033582 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
14033599 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
14033615 TTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:14040490 original size:3 final size:3
Alignment explanation
Indices: 14040482--14040509 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
14040472 TAATATCTCC
14040482 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
14040510 GTTTTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:14040864 original size:39 final size:40
Alignment explanation
Indices: 14040820--14040898 Score: 142
Period size: 39 Copynumber: 2.0 Consensus size: 40
14040810 ATATATTATG
14040820 ACTATATACTATTATTTACATTAAGA-TTTTTTTTACTTA
1 ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
*
14040859 ACTATATACTATTATTTATATTAAGATTTTTTTTTACTTA
1 ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
14040899 TAAATCAAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 25 0.66
40 13 0.34
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.56
Consensus pattern (40 bp):
ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
Found at i:14046718 original size:14 final size:15
Alignment explanation
Indices: 14046691--14046728 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
14046681 TTGAGTAAAA
14046691 AAAAAGATGAAAAATG
1 AAAAA-ATGAAAAATG
14046707 AAAAAATG-AAAATG
1 AAAAAATGAAAAATG
*
14046721 TAAAAATG
1 AAAAAATG
14046729 GAGAAGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 3 0.14
16 5 0.24
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:14048239 original size:88 final size:87
Alignment explanation
Indices: 14047969--14048236 Score: 405
Period size: 86 Copynumber: 3.1 Consensus size: 87
14047959 AGATCAGTGA
* *
14047969 AGATCGAAA-ACAAACCCTGCCTTCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGC
1 AGATCGAAACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGC
14048033 CTTCCTGCATCGACAGTGAAGC
66 CTTCCTGCATCGACAGTGAAGC
* * * * *
14048055 AGATC-AAAAACAAACCTTGCCTCCATCGGTTGTAGTGGAACTGGTTGAAGATAGCAGATTTTGT
1 AGATCGAAACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGC
* *
14048119 TTTCTTGCATCGACAGTGAAGC
66 CTTCCTGCATCGACAGTGAAGC
* *
14048141 AGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGTTGGTTGAGGATAGCAGATCTTG
1 AGATCGAA-ACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTG
*
14048206 CCTTCCTGCATCGACAGTGAAGT
65 CCTTCCTGCATCGACAGTGAAGC
14048229 AGATCGAA
1 AGATCGAA
14048237 GACGGCTAAT
Statistics
Matches: 161, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
85 3 0.02
86 79 0.49
87 2 0.01
88 77 0.48
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (87 bp):
AGATCGAAACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGC
CTTCCTGCATCGACAGTGAAGC
Found at i:14048638 original size:44 final size:44
Alignment explanation
Indices: 14048412--14048831 Score: 198
Period size: 44 Copynumber: 9.7 Consensus size: 44
14048402 TGAAGCCGAT
* * * * *
14048412 AATCCTATCTTCCTTAAGTTGTAGAGAAGCGGATTGAAGTAATA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTAATA
* * * * * * * *
14048456 GATCTTATCTCTCTGAAGTTGCAGTAGAGTGGA-T--CGCAACA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTAATA
* * ** * * * *
14048497 AGTCTTATCCCCCTGAAGTCATAGTGGGGCAGACTGAAG-AAGAA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTAA-TA
* * * * *
14048541 AATATTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTTGAT-
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAG-TAATA
* *
14048585 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTAATA
* * * * * * * *
14048629 AATCTTATCTCTCTGACGTTATAGTAGAGTGGATCGCA-T--CA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTAATA
** * ** * * * *
14048670 GGTCTTATTTCCCTGAAG-TCAAGGTGGGGCAGACTGAAG-AAGCA
1 AATCTTATCTCCCTGAAGTTGTA-GTGGAGCGGATTGAAGTAA-TA
* * * *
14048714 AATCTTATCTCCCT-AAGGTTGCAGTAGAGCAGATTGAAGTCGAT-
1 AATCTTATCTCCCTGAA-GTTGTAGTGGAGCGGATTGAAGT-AATA
* *
14048758 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTAATA
* * * * *
14048802 GATTTTATCTCTCTGAAGTTGCAGTAGAGC
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGC
14048832 AGATCGCATC
Statistics
Matches: 268, Mismatches: 90, Indels: 36
0.68 0.23 0.09
Matches are distributed among these distances:
40 2 0.01
41 48 0.18
42 1 0.00
43 11 0.04
44 200 0.75
45 4 0.01
46 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTAATA
Found at i:14048686 original size:173 final size:173
Alignment explanation
Indices: 14048395--14048848 Score: 694
Period size: 173 Copynumber: 2.6 Consensus size: 173
14048385 AGTGTAAGGA
* * * * * *
14048395 AGCAGATTGAAGCCGATAATCCTATCTTCCTTAAGTTGTAGAGAAGCGGATTGAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
*
14048460 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCAACAAGTCTTATCCCCCTGAAGTCATA-GTGG
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAAGTCTTATCCCCCTGAAGTCA-AGGTGG
* *
14048524 GGCAGACTGAAGAAGAAAATATTATCTCCCTGAGGTTGCAGTGG
130 GGCAGACTGAAGAAGAAAATATTATCTCCCTAAGGTTGCAGTAG
* *
14048568 AGCAGATTGAAGTTGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAAATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* ** * **
14048633 TTATCTCTCTGACGTTATAGTAGAGTGGATCGCATCAGGTCTTATTTCCCTGAAGTCAAGGTGGG
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAAGTCTTATCCCCCTGAAGTCAAGGTGGG
* *
14048698 GCAGACTGAAGAAGCAAATCTTATCTCCCTAAGGTTGCAGTAG
131 GCAGACTGAAGAAGAAAATATTATCTCCCTAAGGTTGCAGTAG
*
14048741 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATT
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
**
14048806 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAGTCTT
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAAGTCTT
14048849 GCCAACTAAA
Statistics
Matches: 252, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
172 1 0.00
173 251 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (173 bp):
AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAAGTCTTATCCCCCTGAAGTCAAGGTGGG
GCAGACTGAAGAAGAAAATATTATCTCCCTAAGGTTGCAGTAG
Found at i:14050319 original size:3 final size:3
Alignment explanation
Indices: 14050311--14050347 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14050301 TAATATCTCC
14050311 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
14050348 CTACTATTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:14054976 original size:18 final size:18
Alignment explanation
Indices: 14054953--14054994 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
14054943 ATTAAATGAT
14054953 TTAATAATAATCAATTTA
1 TTAATAATAATCAATTTA
14054971 TTAATAATAATCAATTTA
1 TTAATAATAATCAATTTA
14054989 TATAAT
1 T-TAAT
14054995 TTAGCTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAATAATAATCAATTTA
Found at i:14055527 original size:41 final size:41
Alignment explanation
Indices: 14055482--14055573 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 41
14055472 CGGCATAAAA
* *
14055482 CCTGCTAGGCTCA-AGCCTCATAAAAACTCACCGGCACTAGG
1 CCTGCTAGGCTCATAGCCTCAT-AAAACACACCGGCACAAGG
* * * * *
14055523 CCTGCAAGGCTTATAGCCTGATATATCACACCGGCACAAGG
1 CCTGCTAGGCTCATAGCCTCATAAAACACACCGGCACAAGG
14055564 CCTGCTAGGC
1 CCTGCTAGGC
14055574 ACGAAGCTCG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 35 0.83
42 7 0.17
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.18
Consensus pattern (41 bp):
CCTGCTAGGCTCATAGCCTCATAAAACACACCGGCACAAGG
Found at i:14061811 original size:52 final size:53
Alignment explanation
Indices: 14061702--14061815 Score: 140
Period size: 52 Copynumber: 2.2 Consensus size: 53
14061692 GTGATTTACT
* * **
14061702 TTATTTAGTAGGCCTTGAGTCGGTGTATATTTTTAGCAAGATTTGAGCTGGTGA
1 TTATTTAGAAGGCCTTAAGTCGGTGTATA-TTTTAGCAAGATTTGAGCCAGTGA
* * * *
14061756 TTATTTAGAAGGCTTTAAGTCGGTGTGTA-TTTAGCAGGCTTTGAGCCAGTGA
1 TTATTTAGAAGGCCTTAAGTCGGTGTATATTTTAGCAAGATTTGAGCCAGTGA
14061808 TTATTTAG
1 TTATTTAG
14061816 CAGGTACCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
52 27 0.52
54 25 0.48
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.40
Consensus pattern (53 bp):
TTATTTAGAAGGCCTTAAGTCGGTGTATATTTTAGCAAGATTTGAGCCAGTGA
Found at i:14061816 original size:26 final size:26
Alignment explanation
Indices: 14061702--14061819 Score: 103
Period size: 26 Copynumber: 4.5 Consensus size: 26
14061692 GTGATTTACT
* * *
14061702 TTATTTAGTAGGCCTTGAGTCGGTGTA
1 TTATTTAGCAGGCTTTGAGCCGGTG-A
* * * *
14061729 TATTTTTAGCAAGATTTGAGCTGGTGA
1 T-TATTTAGCAGGCTTTGAGCCGGTGA
* * *
14061756 TTATTTAGAAGGCTTTAAGTCGGTG-
1 TTATTTAGCAGGCTTTGAGCCGGTGA
*
14061781 TGTATTTAGCAGGCTTTGAGCCAGTGA
1 T-TATTTAGCAGGCTTTGAGCCGGTGA
14061808 TTATTTAGCAGG
1 TTATTTAGCAGG
14061820 TACCACATAT
Statistics
Matches: 70, Mismatches: 18, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
25 1 0.01
26 48 0.69
27 4 0.06
28 17 0.24
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (26 bp):
TTATTTAGCAGGCTTTGAGCCGGTGA
Found at i:14062489 original size:101 final size:101
Alignment explanation
Indices: 14062314--14062520 Score: 396
Period size: 101 Copynumber: 2.0 Consensus size: 101
14062304 ATATAGGATG
*
14062314 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTTGGTTGTAAATATCTTTGGGTGTAAAGTTGG
1 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTAGGTTGTAAATATCTTTGGGTGTAAAGTTGG
14062379 TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
66 TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
14062415 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTAGGTTGTAAATATCTTTGGGTGTAAAGTTGG
1 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTAGGTTGTAAATATCTTTGGGTGTAAAGTTGG
*
14062480 TATATGTTTTGATAAAGGTGACTATTTTGGTAATGA
66 TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
14062516 ATGTT
1 ATGTT
14062521 TATAGTCATC
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 104 1.00
ACGTcount: A:0.25, C:0.04, G:0.25, T:0.46
Consensus pattern (101 bp):
ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTAGGTTGTAAATATCTTTGGGTGTAAAGTTGG
TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
Found at i:14076144 original size:11 final size:12
Alignment explanation
Indices: 14076128--14076160 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14076118 GGACCCAAGA
14076128 TGAATTAATTT-
1 TGAATTAATTTG
*
14076139 TGAATTCATTTG
1 TGAATTAATTTG
14076151 TGAATTAATT
1 TGAATTAATT
14076161 CACTTGTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (12 bp):
TGAATTAATTTG
Found at i:14082235 original size:15 final size:15
Alignment explanation
Indices: 14082215--14082245 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14082205 ATGAATTTAG
14082215 TTAATGTACATGCAT
1 TTAATGTACATGCAT
*
14082230 TTAATGTACATTCAT
1 TTAATGTACATGCAT
14082245 T
1 T
14082246 CATGCACGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (15 bp):
TTAATGTACATGCAT
Found at i:14089245 original size:21 final size:21
Alignment explanation
Indices: 14089215--14089255 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14089205 CGTTACTTTG
*
14089215 GTTTAATGATTTTGA-AAATC
1 GTTTAATGATATTGAGAAATC
14089235 GTTTATATGATATTGAGAAAT
1 GTTTA-ATGATATTGAGAAAT
14089256 GGTCTAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (21 bp):
GTTTAATGATATTGAGAAATC
Found at i:14089323 original size:24 final size:23
Alignment explanation
Indices: 14089304--14089372 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
14089294 AATGATATTG
14089304 AGAAATAGTATAATCTTGATTTA
1 AGAAATAGTATAATCTTGATTTA
* * * *
14089327 ATGATATTG-AGAAT-TATGATTTTT
1 A-GAAATAGTATAATCT-TGA-TTTA
14089351 AGAAATAGTATAATCTTGATTT
1 AGAAATAGTATAATCTTGATTT
14089373 TTAGAATTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
22 1 0.03
23 16 0.47
24 16 0.47
25 1 0.03
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.43
Consensus pattern (23 bp):
AGAAATAGTATAATCTTGATTTA
Found at i:14089357 original size:47 final size:50
Alignment explanation
Indices: 14089294--14089413 Score: 147
Period size: 47 Copynumber: 2.4 Consensus size: 50
14089284 GAGAATTATG
* *
14089294 AATGATATTGAGAAATAGTATAATCTTGA-TTT-AATGATATTGAGAATT
1 AATGATTTTTAGAAATAGTATAATCTTGATTTTAAATGATATTGAGAATT
* * * *
14089342 -ATGATTTTTAGAAATAGTATAATCTTGATTTTTAGAATTATGTTGTGATTT
1 AATGATTTTTAGAAATAGTATAATCTTGA-TTTTA-AATGATATTGAGAATT
14089393 AATGATTTTTAGAAATAGTAT
1 AATGATTTTTAGAAATAGTAT
14089414 GAGAAAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
47 26 0.43
49 3 0.05
51 12 0.20
52 20 0.33
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.45
Consensus pattern (50 bp):
AATGATTTTTAGAAATAGTATAATCTTGATTTTAAATGATATTGAGAATT
Found at i:14089373 original size:24 final size:24
Alignment explanation
Indices: 14089304--14089378 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
14089294 AATGATATTG
*
14089304 AGAAATAGTATAATCTTGA-TTTA
1 AGAAATAGTATAATCTTGATTTTT
* * *
14089327 ATGATATTG-AGAAT-TATGATTTTT
1 A-GAAATAGTATAATCT-TGATTTTT
14089351 AGAAATAGTATAATCTTGATTTTT
1 AGAAATAGTATAATCTTGATTTTT
14089375 AGAA
1 AGAA
14089379 TTATGTTGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
22 1 0.03
23 13 0.32
24 25 0.62
25 1 0.03
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.43
Consensus pattern (24 bp):
AGAAATAGTATAATCTTGATTTTT
Found at i:14101635 original size:13 final size:13
Alignment explanation
Indices: 14101617--14101642 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14101607 TACGTAAAGA
14101617 AATTAATTAATTT
1 AATTAATTAATTT
14101630 AATTAATTAATTT
1 AATTAATTAATTT
14101643 TACATTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AATTAATTAATTT
Found at i:14104698 original size:51 final size:49
Alignment explanation
Indices: 14104639--14104766 Score: 134
Period size: 51 Copynumber: 2.5 Consensus size: 49
14104629 AGGTCGCATG
14104639 TGTAGTACTATGTGCAGGCTACTATGCGTA-CTGGATAGCTTCGAT-CACGTC
1 TGTAGTACTATGTGCAGGCTACTATGCGTATC-GGATAG--T-GATGCACGTC
* * * * *
14104690 TGTAGTACTATGTGTAGGCTGCTACGTGTATCGGATAGTGATGGCCACGTG
1 TGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTGAT-G-CACGTC
*
14104741 TGTAGTACTATGTGCAGACTACTATG
1 TGTAGTACTATGTGCAGGCTACTATG
14104767 TGAACCGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
48 3 0.05
49 1 0.02
51 59 0.92
52 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (49 bp):
TGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTGATGCACGTC
Found at i:14105013 original size:16 final size:16
Alignment explanation
Indices: 14104992--14105023 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14104982 TGATTGAAAG
*
14104992 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
14105008 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
14105024 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:14110414 original size:24 final size:24
Alignment explanation
Indices: 14110387--14110448 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
14110377 CCTAGAAAGT
* *
14110387 AATAAAAACACAAACCCATAAATC
1 AATAAAAACGCAAACCCACAAATC
* *
14110411 AATAAAAATGCAAACTCACAAATC
1 AATAAAAACGCAAACCCACAAATC
*
14110435 AATAGAAACGCAAA
1 AATAAAAACGCAAA
14110449 ATCACAAACC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.61, C:0.21, G:0.05, T:0.13
Consensus pattern (24 bp):
AATAAAAACGCAAACCCACAAATC
Found at i:14110453 original size:24 final size:24
Alignment explanation
Indices: 14110387--14110456 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
14110377 CCTAGAAAGT
* ** *
14110387 AATAAAAACACAAACCCATAAATC
1 AATAAAAACGCAAAATCACAAATC
* *
14110411 AATAAAAATGCAAACTCACAAATC
1 AATAAAAACGCAAAATCACAAATC
*
14110435 AATAGAAACGCAAAATCACAAA
1 AATAAAAACGCAAAATCACAAA
14110457 CCTTGAAGAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.61, C:0.21, G:0.04, T:0.13
Consensus pattern (24 bp):
AATAAAAACGCAAAATCACAAATC
Found at i:14111872 original size:36 final size:36
Alignment explanation
Indices: 14111797--14111872 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
14111787 CATACATACG
*
14111797 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
14111834 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
14111870 TTT
1 TTT
14111873 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:14117012 original size:44 final size:44
Alignment explanation
Indices: 14116946--14117704 Score: 672
Period size: 44 Copynumber: 17.7 Consensus size: 44
14116936 CACAAAGCTT
* *
14116946 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
14116990 TACCTCCCTGGTCAGCAGTGGAATAGGCTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
14117034 TATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
14117078 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
14117122 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTTAGTTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
14117166 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
14117210 TATCTCTCTGGCCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14117254 TATCTCCCTGGTCAGTAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14117288 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * **
14117332 TATCTCCCTGGTGAGCCG-AAAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
14117375 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * * ** * *
14117419 TATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAAACGGCGAA-TCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
14117463 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
14117506 TTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCT
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14117551 TATCTCCCTAGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14117585 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
*
14117629 TATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
*
14117673 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
14117705 AATTACAGAT
Statistics
Matches: 598, Mismatches: 75, Indels: 84
0.79 0.10 0.11
Matches are distributed among these distances:
34 51 0.09
35 4 0.01
36 4 0.01
38 4 0.01
40 4 0.01
41 1 0.00
42 8 0.01
43 57 0.10
44 440 0.74
45 23 0.04
46 1 0.00
47 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:14117183 original size:132 final size:132
Alignment explanation
Indices: 14116946--14117704 Score: 752
Period size: 132 Copynumber: 5.9 Consensus size: 132
14116936 CACAAAGCTT
* *
14116946 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTAAGTCCTACCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * * * *
14117011 AATAGGCTAAAGATTGTGAATCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGT
66 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
14117076 CC
131 CC
*
14117078 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * * * *
14117143 AATAGGTTGAAGATTGTTAGTTCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAGT
66 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
14117208 CC
131 CC
* * *
14117210 TATCTCTCTGGCCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
14117275 AATAGG-T---GA-----A-TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
66 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
14117330 CC
131 CC
* ** ** *
14117332 TATCTCCCTGGTGAGCCG-AAAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG-CAGTAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-GTCAGCAGT
* * ** * * ** * * * ** *
14117394 GGAGTAGGTTGAAAATT-ACAGATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAAACGGC
64 GGAATAGGTTGAAGATTGTGAG-TCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATTGT
*
14117457 GAATCT
127 GAATCC
* * * * **** *
14117463 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CCTTATCTCCCTAGTCAGCA
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAGCA
* *
14117524 GTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTAGTCAGCAGTGG-A-A---T--AG---GT
62 GTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGT
14117579 GAATCC
127 GAATCC
*
14117585 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTG
* *
14117649 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
65 GAATAGGTTGAAGATTGTGAGTCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAA
14117705 AATTACAGAT
Statistics
Matches: 518, Mismatches: 75, Indels: 71
0.78 0.11 0.11
Matches are distributed among these distances:
120 3 0.01
121 61 0.12
122 131 0.25
123 6 0.01
124 1 0.00
125 2 0.00
127 1 0.00
128 2 0.00
129 2 0.00
130 1 0.00
131 44 0.08
132 251 0.48
133 13 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (132 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
CC
Found at i:14117294 original size:34 final size:34
Alignment explanation
Indices: 14117251--14117315 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
14117241 AGATTGTAAG
* *
14117251 TCCTATCTCCCTGGTCAGTAGTGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
14117285 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
14117316 TGAAGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
Found at i:14117425 original size:165 final size:166
Alignment explanation
Indices: 14117119--14117440 Score: 438
Period size: 165 Copynumber: 1.9 Consensus size: 166
14117109 AGATTGTAAG
* * * *
14117119 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTTAGTTCTATCTCCCTGGTCAACAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAG
** * * *
14117184 TGGAATAGGTTGAAGATTGTGAGTCCTATCTCTCTGGCCAGTAGTGGAATAGGTTGAAGATTGTA
66 TAAAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGCCAGTAGTGGAATAGGTTGAAGAATGTA
*
14117249 AGTCCTATCTCCCT-GGTCAGTAGTGGAATAGGTGAA
131 AGTCCTATCTCCCTAAG-CAGTAGTGGAATAGGTGAA
* * *
14117285 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTGAGCCG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAG
*
14117350 -AAAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-T
66 TAAAATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GCCAGTAGTGGAATAGGTTGAAGAATGT
*
14117411 ACAGATCTTATCTCCCTAAGCAGTAGTGGA
130 A-AG-TCCTATCTCCCTAAGCAGTAGTGGA
14117441 GCAGATCGAA
Statistics
Matches: 137, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
163 2 0.01
164 4 0.03
165 71 0.52
166 60 0.44
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (166 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAG
TAAAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGCCAGTAGTGGAATAGGTTGAAGAATGTA
AGTCCTATCTCCCTAAGCAGTAGTGGAATAGGTGAA
Found at i:14117636 original size:78 final size:78
Alignment explanation
Indices: 14117507--14117656 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
14117497 CCACTAGCCT
* *
14117507 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTAG
14117572 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
14117585 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTA
1 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTA
14117649 GAATAGGT
65 GAATAGGT
14117657 TGAAGATTGT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (78 bp):
TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTAG
AATAGGTGAATCC
Found at i:14117854 original size:298 final size:297
Alignment explanation
Indices: 14117226--14117858 Score: 1038
Period size: 298 Copynumber: 2.1 Consensus size: 297
14117216 TCTGGCCAGT
* * * *
14117226 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTGGAATAGGTGAATCCTAT
1 AGTGGAATAGGTTGAAGAATGTAAGTCTTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTAT
* *
14117291 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTGAGCCGAAAATA
66 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGAAAATA
*
14117356 GGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTA
131 GGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTA
14117421 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAA
196 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAA
* *
14117486 GCAGATTTAAGCCACTAGCCTTATCTCCCTAGTCAGC
261 GCAGACTCAAGCCACTAGCCTTATCTCCCTAGTCAGC
*
14117523 AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTAT
1 AGTGGAATAGGTTGAAGAATGTAAGTCTTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTAT
* * *
14117588 CTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTAGAAT
66 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAG-AAAAT
14117653 AGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTT
130 AGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTT
* * * *
14117718 ATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCTAAGGTAGTAGGGA
195 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGA
14117783 AGCAGACTCAAGCCACTAGCCTTATCTCCCTAAG-CAGC
260 AGCAGACTCAAGCCACTAGCCTTATCTCCCT-AGTCAGC
* *
14117821 AGTGGAGTAGGTTGAA-AAT-TACAGATTTTATCTCCCTA
1 AGTGGAATAGGTTGAAGAATGTA-AG-TCTTATCTCCCTA
14117859 AGTTATAGTG
Statistics
Matches: 314, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
296 2 0.01
297 121 0.39
298 189 0.60
299 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (297 bp):
AGTGGAATAGGTTGAAGAATGTAAGTCTTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTAT
CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGAAAATA
GGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAA
GCAGACTCAAGCCACTAGCCTTATCTCCCTAGTCAGC
Found at i:14117940 original size:44 final size:44
Alignment explanation
Indices: 14117803--14118041 Score: 145
Period size: 44 Copynumber: 5.5 Consensus size: 44
14117793 AGCCACTAGC
** * * * *
14117803 CTTATCTCCCT-AAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAGAT
* ** * * *
14117847 TTTATCTCCCT-AAGTTATAGTGGAGCAGATTGAAGACAGTA-AT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAGAT
*
14117890 CCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGAT
* * * ** *
14117934 CTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CGT-ATCAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAT-AGAT
* * * *
14117975 CTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGA-AATCA-AGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAT-AGA-T
* *
14118019 CTTATCCCCCTAAAGTTGCAGTG
1 CTTATCTCCCTGAAGTTGCAGTG
14118042 AGGCAAACTA
Statistics
Matches: 149, Mismatches: 38, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
40 2 0.01
41 29 0.19
42 1 0.01
43 18 0.12
44 99 0.66
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGAT
Found at i:14118052 original size:44 final size:44
Alignment explanation
Indices: 14117968--14118055 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
14117958 AGTAGATCGT
* * * * *
14117968 ATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAA
1 ATCAAGTCTTATCCCCCTAAAGTTGCAGCGGAGCAAACTAAGAA
*
14118012 ATCAAGTCTTATCCCCCTAAAGTTGCAG-TGAGGCAAACTAAGAA
1 ATCAAGTCTTATCCCCCTAAAGTTGCAGCGGA-GCAAACTAAGAA
14118056 TAGAAAATCT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (44 bp):
ATCAAGTCTTATCCCCCTAAAGTTGCAGCGGAGCAAACTAAGAA
Found at i:14118575 original size:22 final size:22
Alignment explanation
Indices: 14118515--14118572 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
14118505 AACCTTCAAA
14118515 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
14118534 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
14118556 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
14118573 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:14119177 original size:36 final size:36
Alignment explanation
Indices: 14119102--14119177 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
14119092 CATACATACG
*
14119102 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
14119139 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
14119175 TTT
1 TTT
14119178 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:14119285 original size:23 final size:22
Alignment explanation
Indices: 14119259--14119301 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
14119249 TAATTCACAC
*
14119259 ACATATATATTTTTCTTATATGT
1 ACATATATATATTT-TTATATGT
14119282 ACATATATATATTTTTATAT
1 ACATATATATATTTTTATAT
14119302 TTTATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (22 bp):
ACATATATATATTTTTATATGT
Found at i:14121452 original size:36 final size:35
Alignment explanation
Indices: 14121376--14121452 Score: 84
Period size: 36 Copynumber: 2.2 Consensus size: 35
14121366 TTATTATTTT
* * *
14121376 TAAAAAATAAATTAAATTTTTATAATTTTAAGGGA
1 TAAAAAATAAATTAAATTATTATAATTTAAAAGGA
* *
14121411 TAAAAAATATAATTTAATTATTATTAATTTAAAATGA
1 TAAAAAATA-AATTAAATTATTA-TAATTTAAAAGGA
14121448 -AAAAA
1 TAAAAA
14121453 TTTCCGTCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
35 9 0.26
36 16 0.46
37 10 0.29
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (35 bp):
TAAAAAATAAATTAAATTATTATAATTTAAAAGGA
Found at i:14132683 original size:34 final size:34
Alignment explanation
Indices: 14132643--14132741 Score: 135
Period size: 34 Copynumber: 2.9 Consensus size: 34
14132633 TTCTGATCTG
14132643 ATATGACATTCTGATATGATATATGTTTCTGAAA
1 ATATGACATTCTGATATGATATATGTTTCTGAAA
* * *
14132677 ATATGACATTCTGATATGGTATATGTTTTTGGAA
1 ATATGACATTCTGATATGATATATGTTTCTGAAA
* * * *
14132711 ATATGACATTCTAATTTAATATATATTTCTG
1 ATATGACATTCTGATATGATATATGTTTCTG
14132742 GTAATGAGAC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.44
Consensus pattern (34 bp):
ATATGACATTCTGATATGATATATGTTTCTGAAA
Found at i:14135175 original size:4 final size:4
Alignment explanation
Indices: 14135166--14135190 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14135156 AAGGACAAGG
14135166 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
14135191 TAGAGGAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:14135286 original size:3 final size:3
Alignment explanation
Indices: 14135267--14135303 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
14135257 GTGCAATTTG
14135267 TAA TAA -AA TAGA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA T
14135304 GAAAAAAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:14136687 original size:18 final size:19
Alignment explanation
Indices: 14136661--14136696 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14136651 ACATTTGTAC
14136661 TTGGACTATT-TTATTATT
1 TTGGACTATTATTATTATT
*
14136679 TTGGTCTATTATTATTAT
1 TTGGACTATTATTATTAT
14136697 GATGGGCCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.22, C:0.06, G:0.11, T:0.61
Consensus pattern (19 bp):
TTGGACTATTATTATTATT
Found at i:14137064 original size:22 final size:22
Alignment explanation
Indices: 14137036--14137080 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
14137026 GCTAAGAATG
*
14137036 GTTTGCATAAAGTCTGAAGCAT
1 GTTTGCACAAAGTCTGAAGCAT
14137058 GTTTGCACAAAGTCTGAAGCAT
1 GTTTGCACAAAGTCTGAAGCAT
14137080 G
1 G
14137081 AGTACCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (22 bp):
GTTTGCACAAAGTCTGAAGCAT
Found at i:14137092 original size:22 final size:22
Alignment explanation
Indices: 14137044--14137085 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14137034 TGGTTTGCAT
** *
14137044 AAAGTCTGAAGCATGTTTGCAC
1 AAAGTCTGAAGCATGAGTACAC
14137066 AAAGTCTGAAGCATGAGTAC
1 AAAGTCTGAAGCATGAGTAC
14137086 CATAAGTTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.24
Consensus pattern (22 bp):
AAAGTCTGAAGCATGAGTACAC
Found at i:14137969 original size:15 final size:16
Alignment explanation
Indices: 14137949--14137981 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14137939 CATTTCACTA
14137949 TTATGTC-TTTTATAT
1 TTATGTCTTTTTATAT
14137964 TTATGTCTTTTTATAT
1 TTATGTCTTTTTATAT
14137980 TT
1 TT
14137982 TGTACGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (16 bp):
TTATGTCTTTTTATAT
Found at i:14140357 original size:14 final size:14
Alignment explanation
Indices: 14140338--14140364 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14140328 GCGACCATTT
14140338 TACTATTATGTTGC
1 TACTATTATGTTGC
14140352 TACTATTATGTTG
1 TACTATTATGTTG
14140365 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.15, T:0.52
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:14142187 original size:19 final size:19
Alignment explanation
Indices: 14142163--14142200 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14142153 TTTTAAAGCT
14142163 TTTGCTGAAATA-AAAAATA
1 TTTGCT-AAATACAAAAATA
*
14142182 TTTGCTTAATACAAAAATA
1 TTTGCTAAATACAAAAATA
14142201 GTAATTAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (19 bp):
TTTGCTAAATACAAAAATA
Found at i:14146316 original size:15 final size:16
Alignment explanation
Indices: 14146296--14146328 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14146286 CATTTCACTA
14146296 TTATGTC-TTTTATAT
1 TTATGTCTTTTTATAT
14146311 TTATGTCTTTTTATAT
1 TTATGTCTTTTTATAT
14146327 TT
1 TT
14146329 TGCACGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (16 bp):
TTATGTCTTTTTATAT
Found at i:14147978 original size:17 final size:17
Alignment explanation
Indices: 14147956--14148026 Score: 69
Period size: 17 Copynumber: 4.4 Consensus size: 17
14147946 ATTTCAATAG
*
14147956 TTTAATATTAAATTTAA
1 TTTAATATTTAATTTAA
*
14147973 TTTAATACTT-ATCTTAA
1 TTTAATATTTAAT-TTAA
* *
14147990 --TAGTATTTTA-TTAA
1 TTTAATATTTAATTTAA
14148004 TTTAATATTTAATTTAA
1 TTTAATATTTAATTTAA
14148021 TTTAAT
1 TTTAAT
14148027 GTTTTTCTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
14 4 0.09
15 6 0.14
16 11 0.26
17 22 0.51
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.56
Consensus pattern (17 bp):
TTTAATATTTAATTTAA
Found at i:14147992 original size:37 final size:35
Alignment explanation
Indices: 14147939--14148009 Score: 83
Period size: 37 Copynumber: 2.0 Consensus size: 35
14147929 ATTCCAAAAA
14147939 TAATATTATTTCAATAGT-TTAATATTAAATTTAATT
1 TAATATTATTTCAATAGTATT-ATATT-AATTTAATT
*
14147975 TAATACTTATCTT-AATAGTATTTTATTAATTTAAT
1 TAATA-TTAT-TTCAATAGTATTATATTAATTTAAT
14148010 ATTTAATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
36 13 0.42
37 14 0.45
38 4 0.13
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (35 bp):
TAATATTATTTCAATAGTATTATATTAATTTAATT
Found at i:14149012 original size:41 final size:41
Alignment explanation
Indices: 14148973--14149143 Score: 247
Period size: 41 Copynumber: 4.2 Consensus size: 41
14148963 CTGATAGGCT
* * * *
14148973 TATAGTCTAATTCCGTTCACC-GACACTTAGCCTGCTAGGCC
1 TATAGTCTGATTCAGTTCACCAG-CACTTAGCCTGCTAGACA
*
14149014 TATAGCCTGATTCAGTTCACCAGCACTTAGCCTGCTAGACA
1 TATAGTCTGATTCAGTTCACCAGCACTTAGCCTGCTAGACA
* *
14149055 TATAGTCCGATTCAGTTCACCGGCACTTAGCCTGCTAGACA
1 TATAGTCTGATTCAGTTCACCAGCACTTAGCCTGCTAGACA
14149096 TATAGTCTGATTCAGTTCACCAGCACTTAGCCTGCTAGACGA
1 TATAGTCTGATTCAGTTCACCAGCACTTAGCCTGCTAGAC-A
14149138 -ATAGTC
1 TATAGTC
14149144 CGAATAATTT
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
41 116 0.98
42 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (41 bp):
TATAGTCTGATTCAGTTCACCAGCACTTAGCCTGCTAGACA
Done.