Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 49 of 216
Found at i:14149156 original size:82 final size:82
Alignment explanation
Indices: 14148987--14149161 Score: 262
Period size: 82 Copynumber: 2.1 Consensus size: 82
14148977 GTCTAATTCC
* * *
14148987 GTTCACCGACACTTAGCCTGCTAGGCCTATAGCCTGATTCAGTTCACCAGCACTTAGCCTGCTAG
1 GTTCACCGGCACTTAGCCTGCTAGACATATAGCCTGATTCAGTTCACCAGCACTTAGCCTGCTAG
* *
14149052 ACATATAGTCCGATTCA
66 ACATATAGTCCGAATAA
*
14149069 GTTCACCGGCACTTAGCCTGCTAGACATATAGTCTGATTCAGTTCACCAGCACTTAGCCTGCTAG
1 GTTCACCGGCACTTAGCCTGCTAGACATATAGCCTGATTCAGTTCACCAGCACTTAGCCTGCTAG
14149134 ACGA-ATAGTCCGAATAA
66 AC-ATATAGTCCGAATAA
* *
14149151 TTTCACTGGCA
1 GTTCACCGGCA
14149162 ATAAATCCGA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
82 83 0.99
83 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (82 bp):
GTTCACCGGCACTTAGCCTGCTAGACATATAGCCTGATTCAGTTCACCAGCACTTAGCCTGCTAG
ACATATAGTCCGAATAA
Found at i:14151082 original size:11 final size:11
Alignment explanation
Indices: 14151053--14151090 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
14151043 GTTGTTACAT
*
14151053 TATTATTTTAA
1 TATTAATTTAA
*
14151064 TAAT-ATTTAA
1 TATTAATTTAA
14151074 TATTAATTTAA
1 TATTAATTTAA
14151085 TATTAA
1 TATTAA
14151091 AGTGATTGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:14157402 original size:28 final size:29
Alignment explanation
Indices: 14157366--14157429 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
14157356 TAAATAAAAA
*
14157366 TTCTATTACCATAC-GA-ATTATAACTATT
1 TTCTTTTACC-TACGGACATTATAACTATT
*
14157394 TTCTTTTACCTACGGATCATTATAATTATT
1 TTCTTTTACCTACGGA-CATTATAACTATT
14157424 TTCTTT
1 TTCTTT
14157430 ATTATTATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 3 0.10
28 11 0.35
30 17 0.55
ACGTcount: A:0.28, C:0.17, G:0.05, T:0.50
Consensus pattern (29 bp):
TTCTTTTACCTACGGACATTATAACTATT
Found at i:14165438 original size:11 final size:10
Alignment explanation
Indices: 14165393--14165441 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 10
14165383 ATGGAGTTTT
14165393 AAATCTATATA
1 AAAT-TATATA
*
14165404 TAATATATATA
1 AAAT-TATATA
14165415 TAAATTATATA
1 -AAATTATATA
14165426 AAATTATACTA
1 AAATTATA-TA
14165437 AAATT
1 AAATT
14165442 TAGCACATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 8 0.24
11 22 0.67
12 3 0.09
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (10 bp):
AAATTATATA
Found at i:14165438 original size:20 final size:20
Alignment explanation
Indices: 14165400--14165438 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14165390 TTTAAATCTA
*
14165400 TATATAATATATATATAAAT
1 TATATAAAATATATATAAAT
14165420 TATATAAAAT-TATACTAAA
1 TATATAAAATATATA-TAAA
14165439 ATTTAGCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
TATATAAAATATATATAAAT
Found at i:14165480 original size:15 final size:14
Alignment explanation
Indices: 14165460--14165490 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
14165450 GAAGTGAAAA
14165460 ATAAATATTATACAT
1 ATAAATATTATA-AT
14165475 ATAAATATTATAAT
1 ATAAATATTATAAT
14165489 AT
1 AT
14165491 TTTTGGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATATTATAAT
Found at i:14177393 original size:44 final size:45
Alignment explanation
Indices: 14177339--14178419 Score: 1002
Period size: 44 Copynumber: 24.5 Consensus size: 45
14177329 AAAAAACAAT
* * * * *
14177339 AGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCAAAAATAAC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
14177383 AGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATTGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * * *
14177427 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
14177472 AGATCTTGTCTTCATGTATTGGT-GTGAAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
14177516 AGATCCTGTCTTCCTATATTGGTAGAGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * *
14177560 AGATCTTGTCTTTCC-ATACTAGTGGTGAAGTAGATCGAAAAAAGC
1 AGATCTTGTC-TTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
14177605 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAAC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * ** * *
14177649 AGATCATGCCTTCCTATATTGGTAGCAAAGTGGGTCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
14177693 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
14177738 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
14177782 AGATCCTGTCTTCCTATATTAGTAGCGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * * *
14177826 AGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * **
14177871 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * *
14177915 AAATCCTGTCTTTCTATATTGGTAGCGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
14177959 AGATCTTGTCTTCCCATACTGGT-GACGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAG-TGAAGTAGATCGAAGATAGC
* * * *
14178004 AGATCTTGTTTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * * * *
14178048 AGATCCTATCTTCTTATATTGATA-TGAAATGGATTGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * *
14178091 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * *
14178136 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
*
14178180 AGATAC-TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGAT-CTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
14178223 AGATCTTGTATTCCCATACTGGTGGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * *
14178268 AAATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG--ACC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * * *
14178310 AGATCTTGTATTCCCATATTGGTGGCGAAGTAGATCGTAGAAAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* * * * *
14178355 AGATCTTGTCTTCATGTATTGGCA-TGAAGTGGATCGAAAATAGC
1 AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
* *
14178399 AGATCCTGTCTTCTTATATTG
1 AGATCTTGTCTTCCTATATTG
14178420 AGGCAGGCTG
Statistics
Matches: 824, Mismatches: 188, Indels: 50
0.78 0.18 0.05
Matches are distributed among these distances:
42 23 0.03
43 53 0.06
44 511 0.62
45 237 0.29
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
AGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGC
Found at i:14177577 original size:133 final size:133
Alignment explanation
Indices: 14177339--14178367 Score: 1546
Period size: 133 Copynumber: 7.8 Consensus size: 133
14177329 AAAAAACAAT
* * * *
14177339 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCAAAAATAACAGATCCTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
*
14177404 GTAGCGAAGTGGATTGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
66 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
*
14177469 AGT
131 AGC
* *
14177472 AGATCTTGTCTTCATGTATTGGTGTGAAGGAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
* * * * *
14177537 GTAGAGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCATACTAGTGGTGAAGTAGATCGAAAAA
66 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
14177602 AGC
131 AGC
* * *
14177605 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCATGCCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
* * *
14177670 GTAGCAAAGTGGGTCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
66 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
14177735 AGC
131 AGC
*
14177738 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTA
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
*
14177803 GTAGCGAAGTGGATCGAAGATGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
66 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
14177868 AGC
131 AGC
** * *
14177871 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAATAAATCCTGTCTTTCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
*
14177936 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGAAGAA
66 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
14178001 AGC
131 AGC
* * *
14178004 AGATCTTGTTTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCTTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
* * * *
14178069 ATA-TGAAATGGATTGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
66 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
14178133 AGC
131 AGC
*
14178136 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATACTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
* * *
14178201 GTAG-GAAGTGGATCGAAGATGCAGATCTTGTATTCCCATACTGGTGGTGAAGTAGATCGAAGAT
66 GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
14178265 AGC
131 AGC
* * * * * * * * * *
14178268 AAATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG--ACCAGATCTTGTATTCCCATATT
1 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
* * * *
14178330 GGTGGCGAAGTAGATCGTAGAAAGCAGATCTTGTCTTC
65 GGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTCTTC
14178368 ATGTATTGGC
Statistics
Matches: 813, Mismatches: 79, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
130 22 0.03
131 12 0.01
132 227 0.28
133 552 0.68
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (133 bp):
AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
GTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
AGC
Found at i:14180189 original size:18 final size:19
Alignment explanation
Indices: 14180168--14180207 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
14180158 TATATATATA
*
14180168 TATGT-ATATTTATTTTTT
1 TATGTAATAATTATTTTTT
14180186 TATGTACATAATTATTTTTT
1 TATGTA-ATAATTATTTTTT
14180206 TA
1 TA
14180208 AACTGATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
20 14 0.74
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (19 bp):
TATGTAATAATTATTTTTT
Found at i:14180622 original size:18 final size:19
Alignment explanation
Indices: 14180590--14180653 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
14180580 TGTTTATCAA
*
14180590 TTTATTTT-TTCATTT-TT
1 TTTATTTTGCTCATTTATT
14180607 TTTATTTTGCTCATTTATT
1 TTTATTTTGCTCATTTATT
*
14180626 TGTATTTTGCGTGTCA-TTATT
1 TTTATTTTGC---TCATTTATT
14180647 TTTATTT
1 TTTATTT
14180654 ATTTATTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
17 8 0.21
18 6 0.15
19 11 0.28
21 11 0.28
22 3 0.08
ACGTcount: A:0.14, C:0.08, G:0.08, T:0.70
Consensus pattern (19 bp):
TTTATTTTGCTCATTTATT
Found at i:14183971 original size:23 final size:23
Alignment explanation
Indices: 14183945--14183995 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
14183935 AATTATTTTA
*
14183945 TTAAATTTAAATTTATTACTATG
1 TTAAATTCAAATTTATTACTATG
* *
14183968 TTAAATTCAATTTTATTACTATT
1 TTAAATTCAAATTTATTACTATG
14183991 TTAAA
1 TTAAA
14183996 ATATCATACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (23 bp):
TTAAATTCAAATTTATTACTATG
Found at i:14194148 original size:18 final size:18
Alignment explanation
Indices: 14194103--14194148 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
14194093 AAAAGTTAAA
*
14194103 ATTGGTAACAGAGGGCCG
1 ATTGGTAACTGAGGGCCG
14194121 ATTGGTAACTGAGGGCCG
1 ATTGGTAACTGAGGGCCG
14194139 ATTGGTAACT
1 ATTGGTAACT
14194149 ATAAATGCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (18 bp):
ATTGGTAACTGAGGGCCG
Found at i:14198878 original size:97 final size:96
Alignment explanation
Indices: 14198699--14198888 Score: 229
Period size: 97 Copynumber: 2.0 Consensus size: 96
14198689 ATTCATTTTG
* * * *
14198699 TATCTTAGCAAATTTGCTATCTTGATTGATTCATTCATGTCAAGCTTTGCTCTCAATAAAATTTC
1 TATCTTAGAAAATTTGCTATCTTGATTAATTCATTCATGTCAAGCTTTGCTCTCAACAAAATATC
* *
14198764 TTCTTATCCATTGTGATAATCTTTTTCATCT
66 GTCTTATCCATTATGATAATCTTTTTCATCT
* * ** * *
14198795 TATCTTAGTAAAATTTGCTATCTTGATTAATTTATTCATTTTGAGCTTAT-TTCTCGACAAAATA
1 TATCTTAG-AAAATTTGCTATCTTGATTAATTCATTCATGTCAAGCTT-TGCTCTCAACAAAATA
* *
14198859 TCGTCTTGTCTATTATGATAATCTTTTTCA
64 TCGTCTTATCCATTATGATAATCTTTTTCA
14198889 AGTATTTTTT
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
96 8 0.10
97 69 0.88
98 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.09, T:0.48
Consensus pattern (96 bp):
TATCTTAGAAAATTTGCTATCTTGATTAATTCATTCATGTCAAGCTTTGCTCTCAACAAAATATC
GTCTTATCCATTATGATAATCTTTTTCATCT
Found at i:14199394 original size:44 final size:44
Alignment explanation
Indices: 14199336--14200000 Score: 298
Period size: 44 Copynumber: 15.5 Consensus size: 44
14199326 CTACTAATCC
* * ** *
14199336 TATCTCCTTAAAGTTGCAGTGAAGTGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAATCACAGATCT
* *** *
14199380 TATCTCTCTGAAGTTGCAGT-AGAGCAGA-TCGCATC-TAG-TCT
1 TATCTCCCTGAAGTTGCAGTGA-AGCAGATTAAAATCACAGATCT
* * ** *
14199421 TATCTCCCTGAAGTTGTAGTGGAGCAGACAAAGAAGAT-ACAAATCT
1 TATCTCCCTGAAGTTGCAGTGAAGCAGA-TTA-AA-ATCACAGATCT
* * *
14199467 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAATCACAGATCT
* *** *
14199511 TATCTCTCTGAAGTTGCAGT-AGAGCAGA-TCGCATC-TAG-TCT
1 TATCTCCCTGAAGTTGCAGTGA-AGCAGATTAAAATCACAGATCT
*
14199552 TATCTCCCTGAAGTTGCAGTCG-AGCGGATTAAAATCACAGATCT
1 TATCTCCCTGAAGTTGCAGT-GAAGCAGATTAAAATCACAGATCT
* * *** *
14199596 TATCTCTCTGAAGTTGCAGT-AGAGCA-AATCGTATC-TAG-TCT
1 TATCTCCCTGAAGTTGCAGTGA-AGCAGATTAAAATCACAGATCT
* * ** * *
14199637 TATCTTCCTGAAGTTGCAGGGGAA-CAGACGAAAGA-AACCA-ATCC
1 TATCTCCCTGAAGTTGCA-GTGAAGCAGATTAAA-ATCA-CAGATCT
* * * *
14199681 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATTT
1 TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAATCACAGATCT
* ***
14199725 TATCTCTCTGAAGTTGCAGT-AGAGCAGA-TCGCATCA-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGA-AGCAGATTAAAATCACAGATCT
* * * ** * *
14199766 TATCTCCCT-AAGTTACAGGGGAA-TAGACGAAAGA-AACCA-ATCC
1 TATCTCCCTGAAGTTGCA-GTGAAGCAGATTAAA-ATCA-CAGATCT
* * * * *
14199809 TATCTCCCTGAAGTTGGAGTGGAGCGGGTTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAATCACAGATCT
* * ***
14199853 TATCTCTCTGAAGTTGCAGT-AGTGCAGA-TCGCATCA-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGA-AGCAGATTAAAATCACAGATCT
* * ** * *
14199894 TATCTCCCT-AAGTTACAGGGGAA-CAGACGAAAGA-AACCA-ATCC
1 TATCTCCCTGAAGTTGCA-GTGAAGCAGATTAAA-ATCA-CAGATCT
* * *
14199937 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAATCACAGATCT
*
14199981 TATCTCTCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGT
14200001 AGAGTAGATC
Statistics
Matches: 446, Mismatches: 124, Indels: 102
0.66 0.18 0.15
Matches are distributed among these distances:
40 21 0.05
41 101 0.23
42 21 0.05
43 67 0.15
44 203 0.46
45 4 0.01
46 29 0.07
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAATCACAGATCT
Found at i:14199541 original size:131 final size:129
Alignment explanation
Indices: 14199308--14199620 Score: 457
Period size: 131 Copynumber: 2.4 Consensus size: 129
14199298 TCATGTTCCC
* * * * * * *
14199308 CAGTGGAGCAGACAAAAGCTACTAATCCTATCTCCTTAAAGTTGCAGTGAAGTGGATTAAAACCA
1 CAGTGGAGCAGACAAAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA
14199373 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTG
66 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTG
*
14199437 TAGTGGAGCAGACAAAGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 CAGTGGAGCAGAC-AA-AAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
14199502 CACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
64 CACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
14199567 G
129 G
* * ** * * *
14199568 CAGTCGAGCGGATTAAA-ATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
1 CAGTGGAGCAGACAAAAGAT-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGC
14199621 AAATCGTATC
Statistics
Matches: 165, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
128 2 0.01
129 44 0.27
130 3 0.02
131 116 0.70
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (129 bp):
CAGTGGAGCAGACAAAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA
CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTG
Found at i:14199577 original size:85 final size:85
Alignment explanation
Indices: 14199464--14199907 Score: 366
Period size: 85 Copynumber: 5.2 Consensus size: 85
14199454 AAGATACAAA
14199464 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCA
* *
14199529 GTAGAGCAGATCGCATCTAG
66 GTAGAGCAGATCGAATCCAG
* *
14199549 TCTTATCTCCCTGAAGTTGCAGTCGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCA
* * *
14199614 GTAGAGCAAATCGTATCTAG
66 GTAGAGCAGATCGAATCCAG
* * * * ** * * *
14199634 TCTTATCTTCCTGAAGTTGCAGGGGAACAGACGAAAGA-AACCA-ATCCTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA-ACCA-CAGATCTTATCTCTCTGAAGTTG
* * ** *
14199697 CAGTGGAGCGGATTAAAACCACAG
64 CAGTAGAGCAGA-TCGAATC-CAG
* * * * *** * * *
14199721 ATTTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCATCA-AG-TCTTATCTCCCT-AAGTTAC
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGC
** * *
14199782 AGGGGAATAGA-C-GAAAGAAACCAA
65 A---G--TAGAGCAGATCGAATCCAG
* * *
14199806 TCCTATCTCCCTGAAGTTGGAGTGGAGCGGGTTAAAACCACAGATCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCA
* * *
14199871 GTAGTGCAGATCGCATCAAG
66 GTAGAGCAGATCGAATCCAG
14199891 TCTTATCTCCCT-AAGTT
1 TCTTATCTCCCTGAAGTT
14199908 ACAGGGGAAC
Statistics
Matches: 280, Mismatches: 61, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
83 3 0.01
84 37 0.13
85 174 0.62
86 13 0.05
87 17 0.06
88 33 0.12
89 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (85 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCA
GTAGAGCAGATCGAATCCAG
Found at i:14199834 original size:128 final size:128
Alignment explanation
Indices: 14199552--14200033 Score: 813
Period size: 128 Copynumber: 3.8 Consensus size: 128
14199542 CATCTAGTCT
* *
14199552 TATCTCCCTGAAGTTGCAGTCGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * *
14199617 GAGCAAATCGTATCTAGTCTTATCTTCCTGAAGTTGCAGGGGAACAGACGAAAGAAACCAATCC
66 GAGCAGATCGCATCAAGTCTTATCTCCCT-AAGTTACAGGGGAACAGACGAAAGAAACCAATCC
*
14199681 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATTTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
*
14199746 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGTTACAGGGGAATAGACGAAAGAAACCAATCC
66 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGTTACAGGGGAACAGACGAAAGAAACCAATCC
* *
14199809 TATCTCCCTGAAGTTGGAGTGGAGCGGGTTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
*
14199874 GTGCAGATCGCATCAAGTCTTATCTCCCTAAGTTACAGGGGAACAGACGAAAGAAACCAATCC
66 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGTTACAGGGGAACAGACGAAAGAAACCAATCC
14199937 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* *
14200002 GAGTAGATCGCATTC-AGTCTTATCTCTCTAAG
66 GAGCAGATCGCA-TCAAGTCTTATCTCCCTAAG
14200034 CAGTAGTGGA
Statistics
Matches: 333, Mismatches: 19, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
128 244 0.73
129 89 0.27
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGCAGATCGCATCAAGTCTTATCTCCCTAAGTTACAGGGGAACAGACGAAAGAAACCAATCC
Found at i:14201853 original size:20 final size:21
Alignment explanation
Indices: 14201830--14201869 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
14201820 AAAGTTTTCT
*
14201830 AAAATTTTAAATAT-ATTAAA
1 AAAATGTTAAATATAATTAAA
*
14201850 AAAATGTTAAGTATAATTAA
1 AAAATGTTAAATATAATTAA
14201870 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATGTTAAATATAATTAAA
Found at i:14201976 original size:36 final size:36
Alignment explanation
Indices: 14201933--14202010 Score: 106
Period size: 35 Copynumber: 2.2 Consensus size: 36
14201923 AGATTTTCTT
*
14201933 AATATATTTAAAATTTTAAA-AAACTTTAAAAA-ATTA
1 AATATA-TTAAAATTTTAAATAAA-TTAAAAAATATTA
*
14201969 AATATATTAAAATTTTAAATATATTAAAAAATATTA
1 AATATATTAAAATTTTAAATAAATTAAAAAATATTA
14202005 AATATA
1 AATATA
14202011 ACCAATTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 20 0.53
36 18 0.47
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (36 bp):
AATATATTAAAATTTTAAATAAATTAAAAAATATTA
Found at i:14201999 original size:19 final size:19
Alignment explanation
Indices: 14201958--14202081 Score: 79
Period size: 17 Copynumber: 7.0 Consensus size: 19
14201948 TTAAAAAACT
14201958 TTAAAAAA--TTAAATATA
1 TTAAAAAATTTTAAATATA
14201975 TT--AAAATTTTAAATATA
1 TTAAAAAATTTTAAATATA
*
14201992 TTAAAAAATATT-AA-ATA
1 TTAAAAAATTTTAAATATA
** *
14202009 -TAACCAATTTTAAA-ATT
1 TTAAAAAATTTTAAATATA
* * * * *
14202026 TTAATATATTTGATATATT
1 TTAAAAAATTTTAAATATA
14202045 TTAAAAAA--TTAAATATA
1 TTAAAAAATTTTAAATATA
*
14202062 TTAAAAAATTGTTAAGTATA
1 TTAAAAAATT-TTAAATATA
14202082 ACCAATTTTA
Statistics
Matches: 81, Mismatches: 16, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
15 4 0.05
16 8 0.10
17 34 0.42
18 11 0.14
19 16 0.20
20 8 0.10
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
TTAAAAAATTTTAAATATA
Found at i:14202049 original size:70 final size:71
Alignment explanation
Indices: 14201970--14202106 Score: 213
Period size: 71 Copynumber: 1.9 Consensus size: 71
14201960 AAAAAATTAA
** *
14201970 ATATATTAAAATTTTAAATATATTAAAAAA-TATTAAATATAACCAATTTTAAAATTTTAATATA
1 ATATATTAAAAAATTAAATATATTAAAAAATTATTAAATATAACCAATTTTAAAAATTTAATATA
14202034 TTTGAT
66 TTTGAT
* * *
14202040 ATATTTTAAAAAATTAAATATATTAAAAAATTGTTAAGTATAACCAATTTTAAAAATTTAATATA
1 ATATATTAAAAAATTAAATATATTAAAAAATTATTAAATATAACCAATTTTAAAAATTTAATATA
14202105 TT
66 TT
14202107 CAATATAGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
70 27 0.45
71 33 0.55
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (71 bp):
ATATATTAAAAAATTAAATATATTAAAAAATTATTAAATATAACCAATTTTAAAAATTTAATATA
TTTGAT
Found at i:14202113 original size:71 final size:69
Alignment explanation
Indices: 14201944--14202118 Score: 208
Period size: 71 Copynumber: 2.5 Consensus size: 69
14201934 ATATATTTAA
* * * **
14201944 AATTTTAAAAAACTTTAAAAAATTAA-ATATATTAAAATTTTAAATATATTAAAAAATATTAAAT
1 AATTTT-AAAAA-TTTAATATATTAATATATTTTAAAAAATTAAATATATTAAAAAATATTAAAT
14202008 ATAACC
64 ATAACC
* * * *
14202014 AATTTTAAAATTTTAATATATTTGATATATTTTAAAAAATTAAATATATTAAAAAATTGTTAAGT
1 AATTTTAAAAATTTAATATA-TTAATATATTTTAAAAAATTAAATATATTAAAAAA-TATTAAAT
14202079 ATAACC
64 ATAACC
14202085 AATTTTAAAAATTTAATATATTCAATATAGTTTT
1 AATTTTAAAAATTTAATATATT-AATATA-TTTT
14202119 TTAAAATATA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
68 7 0.08
69 7 0.08
70 35 0.39
71 36 0.40
72 4 0.04
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.42
Consensus pattern (69 bp):
AATTTTAAAAATTTAATATATTAATATATTTTAAAAAATTAAATATATTAAAAAATATTAAATAT
AACC
Found at i:14202146 original size:19 final size:19
Alignment explanation
Indices: 14202118--14202155 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14202108 AATATAGTTT
14202118 TTTAAAATATATTTTAATA
1 TTTAAAATATATTTTAATA
* *
14202137 TTTAATATATTTTTTAATA
1 TTTAAAATATATTTTAATA
14202156 GGTAAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTAAAATATATTTTAATA
Found at i:14202236 original size:8 final size:8
Alignment explanation
Indices: 14202223--14202270 Score: 60
Period size: 8 Copynumber: 5.8 Consensus size: 8
14202213 GAGTATAACC
14202223 AATTTTAA
1 AATTTTAA
14202231 AATTTTAA
1 AATTTTAA
14202239 AATTTTAA
1 AATTTTAA
*
14202247 TATATTTAA
1 AAT-TTTAA
*
14202256 ATATATTAA
1 A-ATTTTAA
14202265 AATTTT
1 AATTTT
14202271 GAACCTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 22 0.65
9 10 0.29
10 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
AATTTTAA
Found at i:14202281 original size:26 final size:25
Alignment explanation
Indices: 14202226--14202284 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
14202216 TATAACCAAT
* *
14202226 TTTAAAATTTTAAAATTTTAATATA
1 TTTAAAATATTAAAATTTTAACATA
*
14202251 TTTAAATATATTAAAATTTTGAACCTA
1 TTTAAA-ATATTAAAATTTT-AACATA
*
14202278 TTAAAAA
1 TTTAAAA
14202285 ATTTTAAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 6 0.21
26 13 0.46
27 9 0.32
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (25 bp):
TTTAAAATATTAAAATTTTAACATA
Found at i:14204662 original size:6 final size:6
Alignment explanation
Indices: 14204651--14204706 Score: 80
Period size: 6 Copynumber: 9.7 Consensus size: 6
14204641 TGGAGAAAGA
*
14204651 ATATGT ATATGT ATATGT ATATGT ACATGT ATATGT ATATG- -TATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
*
14204697 ACATGT ATAT
1 ATATGT ATAT
14204707 ATTTATACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
4 4 0.09
6 40 0.91
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (6 bp):
ATATGT
Found at i:14214551 original size:18 final size:19
Alignment explanation
Indices: 14214528--14214618 Score: 69
Period size: 17 Copynumber: 5.2 Consensus size: 19
14214518 TAACTTTTTT
14214528 GTATAATTATT-TTAGTTA
1 GTATAATTATTGTTAGTTA
14214546 GTATAATTATTGTTAG-T-
1 GTATAATTATTGTTAGTTA
14214563 -TAT--TT-TTGTATAAGTTTA
1 GTATAATTATTGT-T-AG-TTA
14214581 GT-T-ATTATTGTTAGTTA
1 GTATAATTATTGTTAGTTA
*
14214598 --ATAATTATTGTTACTTA
1 GTATAATTATTGTTAGTTA
14214615 GTAT
1 GTAT
14214619 TATTGTTAGT
Statistics
Matches: 59, Mismatches: 1, Indels: 25
0.69 0.01 0.29
Matches are distributed among these distances:
13 4 0.07
14 3 0.05
15 2 0.03
16 4 0.07
17 17 0.29
18 15 0.25
19 10 0.17
20 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.56
Consensus pattern (19 bp):
GTATAATTATTGTTAGTTA
Found at i:14214801 original size:76 final size:77
Alignment explanation
Indices: 14214596--14214812 Score: 192
Period size: 76 Copynumber: 2.8 Consensus size: 77
14214586 TATTGTTAGT
* * *
14214596 TAATAATTATTGTTACTTAGTATTATTGTTAGTAAAAAACTAATATTATTATTATGGTTAGTTAT
1 TAATTATTATTGTTAGTTAGTAATATTGTTAGTAAAAAAC--A-ATTATTA-T-T-GTTAGTTAT
*
14214661 TAGGATTAGTAAAAACCC
60 TAGGATTAGTAAAAACCA
* **** * **
14214679 TAATTATTATT-TTCGTTAGT-ATGATTGTTAGT-TTTTACATTATATTATTGTTAGTTATTATT
1 TAATTATTATTGTTAGTTAGTAAT-ATTGTTAGTAAAAAACAAT-TATTATTGTTAGTTATTAGG
*
14214741 TTTAGT-AAAACCA
64 ATTAGTAAAAACCA
* *
14214754 TAATTATTATTGTTAGTTAGTAATATTTTTAGTAAAAAACAATTATTATTATTA-TTATT
1 TAATTATTATTGTTAGTTAGTAATATTGTTAGTAAAAAACAATTATTATTGTTAGTTATT
14214813 GTTATTATTA
Statistics
Matches: 108, Mismatches: 21, Indels: 18
0.73 0.14 0.12
Matches are distributed among these distances:
75 22 0.20
76 42 0.39
77 7 0.06
78 2 0.02
79 6 0.06
81 3 0.03
82 16 0.15
83 10 0.09
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (77 bp):
TAATTATTATTGTTAGTTAGTAATATTGTTAGTAAAAAACAATTATTATTGTTAGTTATTAGGAT
TAGTAAAAACCA
Found at i:14214803 original size:3 final size:3
Alignment explanation
Indices: 14214795--14214824 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
14214785 GTAAAAAACA
*
14214795 ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14214825 GTGTTAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14214819 original size:15 final size:14
Alignment explanation
Indices: 14214799--14214837 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
14214789 AAAACAATTA
*
14214799 TTATTATTATTATTG
1 TTATTATTATT-GTG
14214814 TTATTATTATTGTG
1 TTATTATTATTGTG
14214828 TTAGTTATTA
1 TTA-TTATTA
14214838 GGATTAGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (14 bp):
TTATTATTATTGTG
Found at i:14218414 original size:18 final size:18
Alignment explanation
Indices: 14218377--14218414 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
14218367 GAGCTTCGGC
* *
14218377 TCAGGCTCCGATTCAGGA
1 TCAGGCTCCGAATCAAGA
14218395 TCAGGCTCCGAATCAAGA
1 TCAGGCTCCGAATCAAGA
14218413 TC
1 TC
14218415 TGCTACAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (18 bp):
TCAGGCTCCGAATCAAGA
Found at i:14220576 original size:159 final size:158
Alignment explanation
Indices: 14220032--14221078 Score: 1635
Period size: 159 Copynumber: 6.6 Consensus size: 158
14220022 ACTTCAAAAC
* *
14220032 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTTGTA-TTTT-TTTTTTCTCGAATTTTATT
1 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTATT
* * *
14220095 ACTTTCCAAAAATATACTATTTTCGTATTTTATTATTTTATA-TATTTT-TTACATTATGTTTGA
66 ACTTT-AAAAAAAATACTATTTTCGTATTTTATTATTTTATATTATTTTACTACATTATGTTTGA
14220158 AATGTATACATTTAGTGTGTTTTTTAAAT
130 AATGTATACATTTAGTGTGTTTTTTAAAT
* *
14220187 AAATGTAGTAAAAAACCCTTATTTCT-GCCATTTGTTCGTATTTTTCTTTTTTCCC-AGATTTTA
1 AAATTTAGTAAAAAACCCTTATTT-TGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGA-ATTTTA
* *
14220250 TTACTTT-AAAAAAATACTATTTTTGTATTTTATTATTTTATATTATTTTAATACATTATGTTTG
64 TTACTTTAAAAAAAATACTATTTTCGTATTTTATTATTTTATATTATTTTACTACATTATGTTTG
*
14220314 AAATGTATACATTTAGTGTGTGTTTTAAAT
129 AAATGTATACATTTAGTGTGTTTTTTAAAT
*
14220344 AAATTTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTATT
1 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTATT
* * *
14220409 ACTTTAAAAAAAATATTATTTTCGTATTTTATTATTTTATATTATTTTATTACATTATTTTTGAA
66 ACTTTAAAAAAAATACTATTTTCGTATTTTATTATTTTATATTATTTTACTACATTATGTTTGAA
*
14220474 ATGTATACATATAGTGTGTTTTTTAAAT
131 ATGTATACATTTAGTGTGTTTTTTAAAT
*
14220502 AAATTTAGTAAAAAAACCCTTATTTTTGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTAT
1 AAATTTAGT-AAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTAT
**
14220567 TACTTTAAAAAAATATACTATTTTTTTATTTTATTATTTTATATTATTTTACTACATTATGTTTG
65 TACTTTAAAAAAA-ATACTATTTTCGTATTTTATTATTTTATATTATTTTACTACATTATGTTTG
*
14220632 AAATGTATACATATAGTGTGTTTTTTAAAT
129 AAATGTATACATTTAGTGTGTTTTTTAAAT
*
14220662 AAATTTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTATT
1 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTATT
* * *
14220727 ACTTTCAAAAAATATATTATTTTTGTATTTTATTATTTTATATTATTTTACTACATTATGTTTGA
66 ACTTT-AAAAAAAATACTATTTTCGTATTTTATTATTTTATATTATTTTACTACATTATGTTTGA
14220792 AATGTATACATTTAGTGTGTTTTTTAAAT
130 AATGTATACATTTAGTGTGTTTTTTAAAT
* * *
14220821 AAATTTAGTAAAAAAACCCTTATTTTGGCCATTTTTTCGTATTTTTCTTTTTT-CCGGATTTTAT
1 AAATTTAGT-AAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTAT
** *
14220885 TACTTTCAAAAAATTTTCTATTTTTC-TATTTTATTATTTTATATTATTTTACTACATTATGTTT
65 TACTTT-AAAAAAAATACTA-TTTTCGTATTTTATTATTTTATATTATTTTACTACATTATGTTT
14220949 GAAATGTATACATTTAGTGTGTTTTTTAAAT
128 GAAATGTATACATTTAGTGTGTTTTTTAAAT
* * *
14220980 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTCTTCGTATTTTTCTTTTTTCTCGGATTTTATT
1 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTATT
* *
14221045 ACTTTCAAAAAATATACTATTTTCATATTTTATT
66 ACTTT-AAAAAAAATACTATTTTCGTATTTTATT
14221079 TCTTTTCGTA
Statistics
Matches: 833, Mismatches: 43, Indels: 28
0.92 0.05 0.03
Matches are distributed among these distances:
155 68 0.08
156 12 0.01
157 127 0.15
158 137 0.16
159 354 0.42
160 135 0.16
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.53
Consensus pattern (158 bp):
AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGAATTTTATT
ACTTTAAAAAAAATACTATTTTCGTATTTTATTATTTTATATTATTTTACTACATTATGTTTGAA
ATGTATACATTTAGTGTGTTTTTTAAAT
Found at i:14221127 original size:16 final size:15
Alignment explanation
Indices: 14221064--14221130 Score: 71
Period size: 16 Copynumber: 4.2 Consensus size: 15
14221054 AAATATACTA
14221064 TTTTCATATTTTATTT
1 TTTTCATATTTTA-TT
*
14221080 CTTTTCGTATTTTATT
1 -TTTTCATATTTTATT
* *
14221096 TTTTCATAAATATATT
1 TTTTCAT-ATTTTATT
14221112 TTTTCAGTATTTTATT
1 TTTTCA-TATTTTATT
14221128 TTT
1 TTT
14221131 AATGCTATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
15 6 0.14
16 23 0.55
17 13 0.31
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTCATATTTTATT
Found at i:14221130 original size:17 final size:16
Alignment explanation
Indices: 14221064--14221130 Score: 66
Period size: 17 Copynumber: 4.1 Consensus size: 16
14221054 AAATATACTA
14221064 TTTTCATATTTTATTT
1 TTTTCATATTTTATTT
*
14221080 CTTTTCGTATTTTA-TT
1 -TTTTCATATTTTATTT
**
14221096 TTTTCATA-AATATATT
1 TTTTCATATTTTAT-TT
14221112 TTTTCAGTATTTTATTT
1 TTTTCA-TATTTTATTT
14221129 TT
1 TT
14221131 AATGCTATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
14 2 0.05
15 7 0.17
16 10 0.25
17 18 0.45
18 3 0.08
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTCATATTTTATTT
Found at i:14221338 original size:18 final size:19
Alignment explanation
Indices: 14221312--14221348 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14221302 TTTTTTACAC
*
14221312 AAATTATACAAA-AAATTA
1 AAATAATACAAATAAATTA
14221330 AAATAATACAAATAAATTA
1 AAATAATACAAATAAATTA
14221349 CCTTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATAATACAAATAAATTA
Found at i:14221484 original size:13 final size:13
Alignment explanation
Indices: 14221466--14221494 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14221456 CTTTATTTTT
14221466 TTCTTTCTTCTCC
1 TTCTTTCTTCTCC
14221479 TTCTTTCTTCTCC
1 TTCTTTCTTCTCC
14221492 TTC
1 TTC
14221495 AGCCGAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (13 bp):
TTCTTTCTTCTCC
Found at i:14221576 original size:27 final size:27
Alignment explanation
Indices: 14221527--14221592 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
14221517 AATATAAGGG
* * * * *
14221527 TTGGTGCCACCTGTGGCAGTGGCACCT
1 TTGGTGCCGCCTCTGCCACTGGCACCA
14221554 TTGGTGCCGCCTCTGCCACTGGCACCA
1 TTGGTGCCGCCTCTGCCACTGGCACCA
*
14221581 CTGGTGCCGCCT
1 TTGGTGCCGCCT
14221593 GTGGCAGGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.09, C:0.36, G:0.30, T:0.24
Consensus pattern (27 bp):
TTGGTGCCGCCTCTGCCACTGGCACCA
Found at i:14222938 original size:69 final size:69
Alignment explanation
Indices: 14222813--14222943 Score: 163
Period size: 69 Copynumber: 1.9 Consensus size: 69
14222803 AAGAGTTTTA
* * * *
14222813 AGGTGAAAGACTACAGTTTGGCTATGGAAACCAATAGAGTCCATCGAGACAATAAACATGAGGAT
1 AGGTGAAAGACTACAGCTCGGCTATGGAAACCAATAGAGTCCACCAAGACAATAAACATGAGGAT
14222878 TACG
66 TACG
* * * ** * *
14222882 AGGTGTAAGACTATAGCTCGGCTATGGAAACCAATGGAGTCTGCCAATACATTAAACATGAG
1 AGGTGAAAGACTACAGCTCGGCTATGGAAACCAATAGAGTCCACCAAGACAATAAACATGAG
14222944 ACCTGATGGG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 51 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (69 bp):
AGGTGAAAGACTACAGCTCGGCTATGGAAACCAATAGAGTCCACCAAGACAATAAACATGAGGAT
TACG
Found at i:14225371 original size:25 final size:25
Alignment explanation
Indices: 14225316--14225373 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
14225306 TTTTACCAAT
*
14225316 GGTAAAA-TGTCAAAATGTTATTAG
1 GGTAAAATTATCAAAATGTTATTAG
*
14225340 GGATAAAATTATCAAAATTTTATTAG
1 GG-TAAAATTATCAAAATGTTATTAG
14225366 GGTAAAAT
1 GGTAAAAT
14225374 AGAGATAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 11 0.37
26 17 0.57
ACGTcount: A:0.45, C:0.03, G:0.17, T:0.34
Consensus pattern (25 bp):
GGTAAAATTATCAAAATGTTATTAG
Found at i:14226908 original size:24 final size:24
Alignment explanation
Indices: 14226880--14226928 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14226870 GGAGACAATA
14226880 AATCGAGGGTTCTCGACGGAGAGG
1 AATCGAGGGTTCTCGACGGAGAGG
14226904 AATCGAGGGTTCTCGACGGAGAGG
1 AATCGAGGGTTCTCGACGGAGAGG
14226928 A
1 A
14226929 CATCATGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.41, T:0.16
Consensus pattern (24 bp):
AATCGAGGGTTCTCGACGGAGAGG
Found at i:14228852 original size:21 final size:22
Alignment explanation
Indices: 14228819--14228859 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14228809 AGAATTAACA
**
14228819 GTTCATCTGCAACG-ACTAGTG
1 GTTCATCCACAACGTACTAGTG
14228840 GTTCATCCACAACGTACTAG
1 GTTCATCCACAACGTACTAG
14228860 CAGCTTGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (22 bp):
GTTCATCCACAACGTACTAGTG
Found at i:14229046 original size:106 final size:108
Alignment explanation
Indices: 14228817--14229069 Score: 330
Period size: 106 Copynumber: 2.3 Consensus size: 108
14228807 GAAGAATTAA
* * *
14228817 CAGTTCATCTGCAACGACTAGTGGTTCATCCACAACGTACTAGCAGCTTGTTTGCAAACTTCTTT
1 CAGTTCATCTGCAACGACTAATGGTTTATCCACAACGTACTAGCAGCTTGTCTGCAAA--TC-TT
* *
14228882 TTTTATCTAAAAATTTTGGTGGTTCATCCACAATTTTTATTACTAG
63 TTTTATCTAAAAATTCTAGTGGTTCATCCACAATTTTTATTACTAG
* * *
14228928 CAGTTCATCTGCAACGACTAATGGTTTATCCACAACGTATTGGCAGCTTGTCTGTAAA-C-TTTT
1 CAGTTCATCTGCAACGACTAATGGTTTATCCACAACGTACTAGCAGCTTGTCTGCAAATCTTTTT
* * * *
14228991 TATTTGAAAATTCTAGTGGTTCATCCATAATTTTTATTACTGG
66 TATCTAAAAATTCTAGTGGTTCATCCACAATTTTTATTACTAG
** *
14229034 CAGTTCATCTGCAATTACTAATGGTTTATCTACAAC
1 CAGTTCATCTGCAACGACTAATGGTTTATCCACAAC
14229070 ACAGTGTGTA
Statistics
Matches: 127, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
106 74 0.58
108 1 0.01
111 52 0.41
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (108 bp):
CAGTTCATCTGCAACGACTAATGGTTTATCCACAACGTACTAGCAGCTTGTCTGCAAATCTTTTT
TATCTAAAAATTCTAGTGGTTCATCCACAATTTTTATTACTAG
Found at i:14241430 original size:2 final size:2
Alignment explanation
Indices: 14241423--14241455 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14241413 AAAGATGATA
14241423 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14241456 AGAGTTGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14248853 original size:20 final size:20
Alignment explanation
Indices: 14248828--14248877 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
14248818 AAATTACTTG
*
14248828 TTTTTTCAAAATATAATTAT
1 TTTTTTCAAAAAATAATTAT
* *
14248848 TTTTTTAAAAAAATTATTAT
1 TTTTTTCAAAAAATAATTAT
14248868 TTTGTTTCAA
1 TTT-TTTCAA
14248878 TTTAATTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTTTCAAAAAATAATTAT
Found at i:14248862 original size:17 final size:19
Alignment explanation
Indices: 14248828--14248870 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
14248818 AAATTACTTG
14248828 TTTTTTCAAAATATAATTA
1 TTTTTTCAAAATATAATTA
*
14248847 TTTTTTTAAAA-A-AATTA
1 TTTTTTCAAAATATAATTA
14248864 TTATTTT
1 TT-TTTT
14248871 GTTTCAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 7 0.32
18 5 0.23
19 10 0.45
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTTCAAAATATAATTA
Found at i:14253906 original size:78 final size:78
Alignment explanation
Indices: 14253772--14253928 Score: 215
Period size: 78 Copynumber: 2.0 Consensus size: 78
14253762 ATGCAAGTTT
* * * * *
14253772 CGAGTGTTGCTGTCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACCATTGCGAATTCAG
1 CGAGTGTCGCTGCCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACAATTGCAAATTCAC
14253837 TCCTCATTAACCC
66 TCCTCATTAACCC
* * * *
14253850 CGAGTGTCGCTGCCTTATCAATGGAAGCTAAGCCAATTAAGTTAGAATCACAATTGCAAATTCAC
1 CGAGTGTCGCTGCCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACAATTGCAAATTCAC
**
14253915 TCCTTGTTAACCC
66 TCCTCATTAACCC
14253928 C
1 C
14253929 TTGACTAATA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (78 bp):
CGAGTGTCGCTGCCTTACCAAAGGAAGCTAAGCCAAATAAGATAGAATCACAATTGCAAATTCAC
TCCTCATTAACCC
Found at i:14254115 original size:34 final size:34
Alignment explanation
Indices: 14254072--14254139 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
14254062 TTAAATGTAG
14254072 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
1 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
14254106 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
1 AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
14254140 GAATTTCAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (34 bp):
AACATTTGGGTTTTGCCCAAAGCAGATCGAGATT
Found at i:14255833 original size:93 final size:92
Alignment explanation
Indices: 14255701--14255895 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
14255691 TTGATTTTAG
* *
14255701 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
14255765 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
14255793 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
14255858 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
14255886 CAAATTCATA
1 TAAATTCATA
14255896 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:14255953 original size:17 final size:17
Alignment explanation
Indices: 14255928--14255961 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14255918 ATAATTTTAA
*
14255928 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
14255945 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
14255962 TTGATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:14255970 original size:17 final size:18
Alignment explanation
Indices: 14255932--14255971 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
14255922 TTTTAAATTT
*
14255932 TATTAAATCATATATTTA
1 TATTAAATCATATATTGA
14255950 -ATTAAATCATAT-TTGA
1 TATTAAATCATATATTGA
14255966 TATTAA
1 TATTAA
14255972 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTGA
Found at i:14256086 original size:15 final size:15
Alignment explanation
Indices: 14256051--14256185 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
14256041 TTAAGAATTT
*
14256051 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14256065 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14256079 TATTTAATAATAAT-
1 TATTTAATTATAATA
14256093 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
14256107 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
*
14256122 TATTATGATTTGAGTAAATTCA
1 TATT-T-AATT-A-T-AA-T-A
*
14256144 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14256158 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14256172 TATTTAATAATAAT
1 TATTTAATTATAAT
14256186 TATGTTTAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 17 0.18
15 32 0.34
16 3 0.03
17 2 0.02
18 3 0.03
19 2 0.02
20 4 0.04
21 1 0.01
22 5 0.05
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14256095 original size:120 final size:119
Alignment explanation
Indices: 14255927--14256145 Score: 336
Period size: 120 Copynumber: 1.8 Consensus size: 119
14255917 AATAATTTTA
* * *
14255927 AATTTTATTAAATCATATATTTAATTAAATCATATTTGATATTAATTAT-TTGAAATTT-TCTTT
1 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTT--AATTTATATTT
*
14255990 TATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
64 TACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
*
14256046 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTTAATTTATATTT
1 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATAATAATTATGTTAATTTATATTT
14256110 TACAGTATCATATATTATGATTTGAGTAAATTCATA
64 TACAGTATCATATATTATGATTTGAGTAAATTCATA
14256146 TTAAATTATA
Statistics
Matches: 91, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
119 23 0.25
120 63 0.69
121 5 0.05
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (119 bp):
AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTTAATTTATATTTTA
CAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
Found at i:14256174 original size:16 final size:16
Alignment explanation
Indices: 14256153--14256194 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14256143 ATATTAAATT
*
14256153 ATATATTTTAATTATA
1 ATATATTTTAATAATA
14256169 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
14256184 AT-TATGTTTAA
1 ATATAT-TTTAA
14256195 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:14256302 original size:154 final size:156
Alignment explanation
Indices: 14256144--14256441 Score: 546
Period size: 154 Copynumber: 1.9 Consensus size: 156
14256134 AGTAAATTCA
*
14256144 TATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
14256209 TTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
66 TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
14256272 AAATTTATGCTAATTATTAAGAATTT
131 AAATTTATGCTAATTATTAAGAATTT
14256298 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
*
14256363 TTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTACCAAAA
66 TTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAA
*
14256428 CAAATTTCTGCTAA
130 CAAATTTATGCTAA
14256442 GGGTATTCTA
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 76 0.55
155 2 0.01
157 60 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
AAATTTATGCTAATTATTAAGAATTT
Found at i:14256322 original size:18 final size:17
Alignment explanation
Indices: 14256294--14256328 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14256284 ATTATTAAGA
*
14256294 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14256311 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14256329 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14256582 original size:16 final size:16
Alignment explanation
Indices: 14256561--14256599 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14256551 TTGATTTGCT
*
14256561 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
14256577 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
14256593 ATTACAC
1 ATTACAC
14256600 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:14256600 original size:16 final size:16
Alignment explanation
Indices: 14256574--14256630 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
14256564 ACACAGCTTT
* *
14256574 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
14256590 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
14256606 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
14256622 TCCAATACA
1 TCCAATACA
14256631 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:14263415 original size:34 final size:34
Alignment explanation
Indices: 14263363--14263472 Score: 127
Period size: 34 Copynumber: 3.2 Consensus size: 34
14263353 TTAATACTCA
*
14263363 ATAAGCATGACTT-TTGCTAACGTATTGATATGTT
1 ATAAGCAT-ACTTACTGCTAACGTATTGATATGTT
* * *
14263397 ATAAGCATA-TCTACTGCTATCGTATTGATCTATT
1 ATAAGCATACT-TACTGCTAACGTATTGATATGTT
*
14263431 ATAAGCATACTTATTGCT-ACTGTATTGATATGTT
1 ATAAGCATACTTACTGCTAAC-GTATTGATATGTT
14263465 ATAAGCAT
1 ATAAGCAT
14263473 GCCATATTGC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
32 1 0.02
33 3 0.05
34 59 0.92
35 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.41
Consensus pattern (34 bp):
ATAAGCATACTTACTGCTAACGTATTGATATGTT
Found at i:14263599 original size:45 final size:44
Alignment explanation
Indices: 14263549--14263701 Score: 157
Period size: 45 Copynumber: 3.4 Consensus size: 44
14263539 TGTTTACATC
* * *
14263549 GATTAGTGGTTTATCCACAACATATTAGCATCTTTTATCTGTATT
1 GATTAGTGGTTTATCCA-AACGTATTAGCATCTTTTATCTGCACT
* *
14263594 GATTAGTAGTTTATCCAAACCGTATTAGCGA-CTTTTATCTGCCCT
1 GATTAGTGGTTTATCCAAA-CGTATTAGC-ATCTTTTATCTGCACT
* * *
14263639 GATTAGTGGTTTATATCCATATCGTATTAGTAGT-TTTTATCTACACT
1 GATTAGTGG-TT-TATCCA-AACGTATTAGCA-TCTTTTATCTGCACT
14263686 GATTAGTGGTTTATCC
1 GATTAGTGGTTTATCC
14263702 CCACCGTATT
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
44 2 0.02
45 48 0.53
46 6 0.07
47 34 0.37
48 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (44 bp):
GATTAGTGGTTTATCCAAACGTATTAGCATCTTTTATCTGCACT
Found at i:14263655 original size:23 final size:23
Alignment explanation
Indices: 14263629--14263699 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
14263619 TAGCGACTTT
*
14263629 TATCTGCCCTGATTAGTGGTTTA
1 TATCTACCCTGATTAGTGGTTTA
* * * *
14263652 TATCCATATCGT-ATTAGTAGTTTT
1 TAT-C-TACCCTGATTAGTGGTTTA
*
14263676 TATCTACACTGATTAGTGGTTTA
1 TATCTACCCTGATTAGTGGTTTA
14263699 T
1 T
14263700 CCCCACCGTA
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
22 3 0.09
23 15 0.43
24 14 0.40
25 3 0.09
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (23 bp):
TATCTACCCTGATTAGTGGTTTA
Found at i:14267447 original size:103 final size:104
Alignment explanation
Indices: 14267203--14267468 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
14267193 GTTGTACATA
** *
14267203 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
14267268 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
14267307 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
14267371 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
14267410 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
14267469 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:14269177 original size:25 final size:21
Alignment explanation
Indices: 14269152--14269194 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14269142 TTTGAGGAAT
14269152 AAATAAATTGGAAATTAACTA
1 AAATAAATTGGAAATTAACTA
14269173 AAATAAATTGGAAATTAACTA
1 AAATAAATTGGAAATTAACTA
14269194 A
1 A
14269195 GTTTTCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.58, C:0.05, G:0.09, T:0.28
Consensus pattern (21 bp):
AAATAAATTGGAAATTAACTA
Found at i:14283795 original size:19 final size:19
Alignment explanation
Indices: 14283771--14283902 Score: 201
Period size: 19 Copynumber: 6.8 Consensus size: 19
14283761 AATTTTTGAG
14283771 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14283790 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
14283809 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14283828 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
14283849 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
14283868 TATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14283887 GATATTCAATCTTAGA
1 GATATGCAATCTTAGA
14283903 ATATATGATT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
19 84 0.82
21 19 0.18
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14283865 original size:59 final size:59
Alignment explanation
Indices: 14283772--14283909 Score: 212
Period size: 59 Copynumber: 2.4 Consensus size: 59
14283762 ATTTTTGAGG
*
14283772 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATATGAT
* * *
14283831 ATATGCAATCTTAGATATGATATGCAATCTTAGATATTATATATAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATATGAT
14283890 AT-T-CAATCTTAGA-AT-ATATG
1 ATATGCAATCTTAGATATGATATG
14283910 ATTTTGTAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 10 0.13
58 1 0.01
59 57 0.76
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (59 bp):
ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATATGAT
Found at i:14284517 original size:25 final size:25
Alignment explanation
Indices: 14284466--14284517 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
14284456 AATTTTGTTA
**
14284466 ATGTAATTATTATTATTATTTTCAT
1 ATGTAATTATTATTATTATTAGCAT
14284491 ATGTAATTATTATTATT-TTAGCTAT
1 ATGTAATTATTATTATTATTAGC-AT
14284516 AT
1 AT
14284518 ATATATGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.58
Consensus pattern (25 bp):
ATGTAATTATTATTATTATTAGCAT
Found at i:14285095 original size:19 final size:20
Alignment explanation
Indices: 14285056--14285095 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14285046 TTCTAGGCCT
* *
14285056 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
14285076 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
14285095 T
1 T
14285096 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:14289525 original size:14 final size:13
Alignment explanation
Indices: 14289503--14289555 Score: 56
Period size: 12 Copynumber: 4.2 Consensus size: 13
14289493 AAAAATATTT
*
14289503 GAAAAA-AAAGAG
1 GAAAAAGAAAAAG
14289515 GAAAAAG-AAAAG
1 GAAAAAGAAAAAG
*
14289527 GAAAAAGGAAAAAA
1 GAAAAA-GAAAAAG
*
14289541 GAAAAAGTAAAAG
1 GAAAAAGAAAAAG
14289554 GA
1 GA
14289556 GAGGCCAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
12 16 0.47
13 8 0.24
14 10 0.29
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (13 bp):
GAAAAAGAAAAAG
Found at i:14289539 original size:20 final size:20
Alignment explanation
Indices: 14289503--14289555 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
14289493 AAAAATATTT
*
14289503 GAAAAA-AAAGAGG-AAAAA
1 GAAAAAGAAAAAGGAAAAAA
*
14289521 GAAAAGGAAAAAGGAAAAAA
1 GAAAAAGAAAAAGGAAAAAA
*
14289541 GAAAAAGTAAAAGGA
1 GAAAAAGAAAAAGGA
14289556 GAGGCCAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 5 0.17
19 6 0.21
20 18 0.62
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (20 bp):
GAAAAAGAAAAAGGAAAAAA
Found at i:14291052 original size:132 final size:132
Alignment explanation
Indices: 14290752--14291367 Score: 1099
Period size: 132 Copynumber: 4.7 Consensus size: 132
14290742 AACAGATCAG
* *
14290752 TGAAAGTTGTAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
*
14290817 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAG-CTTGTCTCCCTGAGCAGCAGTGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
14290881 GT
131 GT
* * *
14290883 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGGCAGCGAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* *
14290948 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGTAGCAACGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
14291013 GT
131 GT
*
14291015 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
*
14291080 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
14291145 GT
131 GT
*
14291147 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATAT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
14291212 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
14291277 GT
131 GT
* * *
14291279 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
14291344 TTCCAAGATAGTGGGAAGCAGATT
66 TTCCAAGATAGTGGGAAGCAGATT
14291368 AAAGTCGACA
Statistics
Matches: 462, Mismatches: 22, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
131 96 0.21
132 366 0.79
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
GT
Found at i:14291075 original size:44 final size:44
Alignment explanation
Indices: 14290764--14291343 Score: 216
Period size: 44 Copynumber: 13.2 Consensus size: 44
14290754 AAAGTTGTAG
* * * *
14290764 ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
* * * *
14290808 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAA
* * * * * * * ** * *
14290851 AGCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
* * * *
14290895 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGGCAGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
* * * *
14290939 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAA
** * * * * ** * * * ** * *
14290983 GCCTTGTCTCCCTGAGTAGCAACGGAGAAGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
* *
14291027 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
* * * *
14291071 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAA
** * * * * * * ** * *
14291115 GCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
* * *
14291159 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
* * * * *
14291203 ATCTTATATTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTAT-CTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACAGCAA
** * * * * * * ** * *
14291247 GCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
*
14291291 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-GACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAG-CAA
14291335 ATCTTATCT
1 ATCTTATCT
14291344 TTCCAAGATA
Statistics
Matches: 360, Mismatches: 150, Indels: 52
0.64 0.27 0.09
Matches are distributed among these distances:
42 19 0.05
43 40 0.11
44 272 0.76
45 24 0.07
46 5 0.01
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGCAA
Found at i:14291430 original size:44 final size:41
Alignment explanation
Indices: 14291382--14291530 Score: 122
Period size: 44 Copynumber: 3.5 Consensus size: 41
14291372 TCGACAATCC
*
14291382 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACC-TAG-TCT
* * *** *
14291426 TATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCTAGTCT
* * * *
14291466 TATCTCCCTGAAGTTGCAGTGAAACAGACTAAATAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-T-AA-AACCTAGTCT
14291510 TATC-CTCCTGAAGTTGCAGTG
1 TATCTC-CCTGAAGTTGCAGTG
14291531 AGGCAGACTG
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
40 21 0.25
41 8 0.10
42 4 0.05
43 7 0.08
44 44 0.52
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCTAGTCT
Found at i:14291739 original size:19 final size:19
Alignment explanation
Indices: 14291715--14291846 Score: 201
Period size: 19 Copynumber: 6.8 Consensus size: 19
14291705 AATTTTTGAG
14291715 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14291734 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
14291753 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14291772 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
14291793 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* ** *
14291812 TATATATAATTTTAGATAT
1 GATATGCAATCTTAGATAT
14291831 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14291847 ATATATGATT
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
19 82 0.81
21 19 0.19
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14291809 original size:59 final size:57
Alignment explanation
Indices: 14291715--14291853 Score: 201
Period size: 59 Copynumber: 2.4 Consensus size: 57
14291705 AATTTTTGAG
*
14291715 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* * * *
14291772 GATATATGCAATCTTAGATATGATATGCAATCTTAGATATTATATATAATTTTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
14291831 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
14291854 ATTTTGTAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 16 0.21
59 52 0.69
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:14293001 original size:21 final size:21
Alignment explanation
Indices: 14292963--14293011 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
14292953 TTTGTATGTG
*
14292963 ATTATTTTTTATTATATTGAT
1 ATTATTTTTCATTATATTGAT
* *
14292984 TTTATTTATTCATT-TATTTAT
1 ATTATTT-TTCATTATATTGAT
14293005 ATTATTT
1 ATTATTT
14293012 CTAGGCCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
ATTATTTTTCATTATATTGAT
Found at i:14293059 original size:19 final size:20
Alignment explanation
Indices: 14293020--14293059 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14293010 TTCTAGGCCT
* *
14293020 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
14293040 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
14293059 T
1 T
14293060 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:14293433 original size:98 final size:98
Alignment explanation
Indices: 14293316--14293494 Score: 331
Period size: 98 Copynumber: 1.8 Consensus size: 98
14293306 AAATATTCTG
* *
14293316 AGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
1 AGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
14293381 TGGATGTTCTTTTAAAGTAAAGGAAATGTTTCA
66 TGGATGTTCTTTTAAAGTAAAGGAAATGTTTCA
*
14293414 AGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
1 AGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
14293479 TGGATGTTCTTTTAAA
66 TGGATGTTCTTTTAAA
14293495 ATTTTATTGT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 78 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (98 bp):
AGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
TGGATGTTCTTTTAAAGTAAAGGAAATGTTTCA
Found at i:14308774 original size:54 final size:54
Alignment explanation
Indices: 14308671--14308777 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
14308661 TTTGGTGTAT
* * * *
14308671 CAAGTCAGTGTGTTACACAGCCTAGCACACGGCCTACGACATGGTCGTGTGTCA
1 CAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGACACGGCCGTGTGTCA
* * ** *
14308725 CAAGTCAGAGAGTTACACGGTCTAGCACACGGCCTGTGCCACGGCCGTGTGTC
1 CAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGACACGGCCGTGTGTC
14308778 CCTTTGTTCA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (54 bp):
CAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGACACGGCCGTGTGTCA
Found at i:14312073 original size:27 final size:27
Alignment explanation
Indices: 14312030--14312083 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
14312020 TAGTTTACCG
*
14312030 AATTTTTATTATAATTAATATAATTAT
1 AATTTTTATTAAAATTAATATAATTAT
* *
14312057 AATTTTT-TTAAACATTATTATATTTAT
1 AATTTTTATTAAA-ATTAATATAATTAT
14312084 TTAATTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (27 bp):
AATTTTTATTAAAATTAATATAATTAT
Found at i:14313330 original size:8 final size:8
Alignment explanation
Indices: 14313312--14313355 Score: 79
Period size: 8 Copynumber: 5.4 Consensus size: 8
14313302 ATGAGATGCT
14313312 ATGGACTAA
1 ATGG-CTAA
14313321 ATGGCTAA
1 ATGGCTAA
14313329 ATGGCTAA
1 ATGGCTAA
14313337 ATGGCTAA
1 ATGGCTAA
14313345 ATGGCTAA
1 ATGGCTAA
14313353 ATG
1 ATG
14313356 AACTAAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 31 0.89
9 4 0.11
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (8 bp):
ATGGCTAA
Found at i:14320116 original size:26 final size:26
Alignment explanation
Indices: 14320080--14320130 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14320070 CTGATCAAAA
14320080 AGGGGTTGCTAAGTGCGGATTCCCTT
1 AGGGGTTGCTAAGTGCGGATTCCCTT
*
14320106 AGGGGTTGCTAAGTGCTGATTCCCT
1 AGGGGTTGCTAAGTGCGGATTCCCT
14320131 GAATTATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.16, C:0.20, G:0.33, T:0.31
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCGGATTCCCTT
Found at i:14320156 original size:42 final size:42
Alignment explanation
Indices: 14320109--14320254 Score: 134
Period size: 42 Copynumber: 3.5 Consensus size: 42
14320099 TTCCCTTAGG
* * *
14320109 GGTTGCTAAGTGCTGATTCCCTGAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCTGTATCATTGATTATAAAGGT
* * * * *
14320151 GGTTGCGAAGTGTTGATTCCATCGTATCCTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCCT-GTATCATTGATTAT-AAAGGT
* * * * *
14320194 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATAT-AAGTT
1 GGTTGCTAAGTGCTGATTCCCTGTATCATTGATTATAAAGGT
*
14320235 GGTTGCTATGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
14320255 ACGGAGTAAC
Statistics
Matches: 84, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
40 3 0.04
41 20 0.24
42 29 0.35
43 27 0.32
44 5 0.06
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCTGTATCATTGATTATAAAGGT
Found at i:14320198 original size:43 final size:41
Alignment explanation
Indices: 14320106--14320213 Score: 117
Period size: 43 Copynumber: 2.6 Consensus size: 41
14320096 GGATTCCCTT
* *
14320106 AGGGGTTGCTAAGTGCTGATTCCCTGAATTATTGATTCTAA
1 AGGGGTTGCTAAGTGCTGATTCCATGAATCATTGATTCTAA
* * * * *
14320147 AGGTGGTTGCGAAGTGTTGATTCCATCGTATCCTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCCAT-GAATCATTGATTCT-AA
*
14320191 AGGGGTTGCTATGTGCTGATTCC
1 AGGGGTTGCTAAGTGCTGATTCC
14320214 CCGTATCACT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.06
42 19 0.35
43 27 0.50
44 5 0.09
ACGTcount: A:0.20, C:0.15, G:0.29, T:0.36
Consensus pattern (41 bp):
AGGGGTTGCTAAGTGCTGATTCCATGAATCATTGATTCTAA
Found at i:14326092 original size:19 final size:20
Alignment explanation
Indices: 14326044--14326092 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
14326034 ATCTCTAATC
14326044 CTTATTCTCTCAAACTTATCA
1 CTTATTCTCTCAAACTTAT-A
*
14326065 CTT-TTCTCTCAAATTTAT-
1 CTTATTCTCTCAAACTTATA
14326083 CTTATTCTCT
1 CTTATTCTCT
14326093 TACACTCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 3 0.12
19 6 0.23
20 14 0.54
21 3 0.12
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (20 bp):
CTTATTCTCTCAAACTTATA
Found at i:14327924 original size:42 final size:42
Alignment explanation
Indices: 14327698--14327925 Score: 147
Period size: 42 Copynumber: 5.4 Consensus size: 42
14327688 TTTAGTCGAC
* * * * * * * *
14327698 GATGCATTTATGTGCTAGTGTATTTTCTTTGGTTCATCTGAT
1 GATGCACTTACGTGCCAGTATATTTGCTTCGGCTCATCCGAT
* *
14327740 GATGCACTTACGTGCCAGTATATTTGCTTCGGCTCATCCAAA
1 GATGCACTTACGTGCCAGTATATTTGCTTCGGCTCATCCGAT
* * * * * * *
14327782 GATGCATTTACATGTCATTATATTTTCTTCGGTTCATTCGAT
1 GATGCACTTACGTGCCAGTATATTTGCTTCGGCTCATCCGAT
* * * * *
14327824 GATGCACCTTATGTGCCATTATAATTGCTTTGGC-C-TGCCAAT
1 GATGCA-CTTACGTGCCAGTATATTTGCTTCGGCTCAT-CCGAT
* ** *
14327866 AATGCACTATGTGTGCCAGTATATTTCCTTCGGC-CTATCCGAT
1 GATGCACT-TACGTGCCAGTATATTTGCTTCGGCTC-ATCCGAT
* *
14327909 GATGCACTAAGGTGCCA
1 GATGCACTTACGTGCCA
14327926 AATTGATATG
Statistics
Matches: 141, Mismatches: 40, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
41 3 0.02
42 107 0.76
43 30 0.21
44 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (42 bp):
GATGCACTTACGTGCCAGTATATTTGCTTCGGCTCATCCGAT
Found at i:14329425 original size:21 final size:20
Alignment explanation
Indices: 14329388--14329433 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
14329378 AAAATTTATT
14329388 AAAAATTAAAAAGATTACAA
1 AAAAATTAAAAAGATTACAA
* * *
14329408 AAAATATTTAAAATATTATAA
1 AAAA-ATTAAAAAGATTACAA
14329429 AAAAA
1 AAAAA
14329434 ATTCAAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (20 bp):
AAAAATTAAAAAGATTACAA
Found at i:14329430 original size:19 final size:19
Alignment explanation
Indices: 14329355--14329430 Score: 50
Period size: 19 Copynumber: 3.9 Consensus size: 19
14329345 TTTTTAAAGA
*
14329355 ATTTAAAA-ATTTTCAAAAT
1 ATTTAAAATATTAT-AAAAT
*
14329374 ATCTAAAAT-TTATTAAAA-
1 ATTTAAAATATTA-TAAAAT
* * *
14329392 ATTAAAAAGATTACAAAAAAT
1 ATTTAAAATATT--ATAAAAT
14329413 ATTTAAAATATTATAAAA
1 ATTTAAAATATTATAAAA
14329431 AAAATTCAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
18 6 0.14
19 20 0.48
20 5 0.12
21 11 0.26
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (19 bp):
ATTTAAAATATTATAAAAT
Found at i:14335370 original size:44 final size:44
Alignment explanation
Indices: 14335304--14335408 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
14335294 ACATCACTTG
*
14335304 TCACTTGTCACTGATCAGATAAGTGTA-CATAAAGCTACCACCTA
1 TCACTTGTCACTGATCAAATAAGTGTAGC-TAAAGCTACCACCTA
*
14335348 TCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTA
1 TCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACCTA
*
14335392 TCACTTGTTACTGATCA
1 TCACTTGTCACTGATCA
14335409 GAAGTACTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
44 56 0.98
45 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (44 bp):
TCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCACCTA
Found at i:14343354 original size:92 final size:91
Alignment explanation
Indices: 14343215--14343387 Score: 240
Period size: 92 Copynumber: 1.9 Consensus size: 91
14343205 GTGCCCGGCA
* * * *
14343215 ATGTGAGATATACGGGCGTATGAGCCACACGGTCTAGTTGAGGTAGGGTATGTAGGCCATACATT
1 ATGTGAGACACACAGGCGTATGAGCCACACGGTCTAGTTGAGGTAGGG-ATGTAGGCCACACATT
** *
14343280 TTTTCCTGGTGGGCTGTATGCTCAACC
65 TTGGCCTAGTGGGCTGTATGCTCAACC
* *
14343307 ATGTGAGACACACAGGCGTGTGAGCCACACGGTCTAGTT-ATGGTAGGGATGTGGGCCACACATT
1 ATGTGAGACACACAGGCGTATGAGCCACACGGTCTAGTTGA-GGTAGGGATGTAGGCCACACATT
14343371 TTGGCCTAGTGGGCTGT
65 TTGGCCTAGTGGGCTGT
14343388 GTGGGTCACA
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
91 29 0.41
92 42 0.59
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.27
Consensus pattern (91 bp):
ATGTGAGACACACAGGCGTATGAGCCACACGGTCTAGTTGAGGTAGGGATGTAGGCCACACATTT
TGGCCTAGTGGGCTGTATGCTCAACC
Found at i:14350053 original size:25 final size:24
Alignment explanation
Indices: 14350007--14350055 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
14349997 GTCATTAGGG
* *
14350007 TTACCGATTCCAGCTCGTATGAGC
1 TTACCGATACCAGCTCGCATGAGC
14350031 TTACCGATACTCAGCTCGCATGAGC
1 TTACCGATAC-CAGCTCGCATGAGC
14350056 ATACATGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (24 bp):
TTACCGATACCAGCTCGCATGAGC
Found at i:14353958 original size:21 final size:18
Alignment explanation
Indices: 14353911--14353958 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
14353901 ATAAAATACT
14353911 CTATTATAATAATTATTA
1 CTATTATAATAATTATTA
14353929 CTATTATAATAATTATTA
1 CTATTATAATAATTATTA
* *
14353947 CTCTTAAAATAA
1 CTATTATAATAA
14353959 AAGGTTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (18 bp):
CTATTATAATAATTATTA
Found at i:14354509 original size:42 final size:42
Alignment explanation
Indices: 14354348--14354510 Score: 211
Period size: 42 Copynumber: 3.9 Consensus size: 42
14354338 CAAACAAAAA
* * *
14354348 CGCCGCTAAAGAACATGTTTTTTAGCGGCG-TTTATTCTTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTC-TAAG
* *
14354390 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTCTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
14354432 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* * ** * *
14354474 CGTCACTAAAGAACATTATCTTTAACAGCGTTTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
14354511 TTAAATCCCG
Statistics
Matches: 108, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
42 102 0.94
43 6 0.06
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:14354885 original size:21 final size:21
Alignment explanation
Indices: 14354861--14354905 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
14354851 GCTTCTTTCA
14354861 CTGCAGACT-CCGCTTCCCTCG
1 CTGCAG-CTGCCGCTTCCCTCG
*
14354882 CTGCAGCTGCTGCTTCCCTCG
1 CTGCAGCTGCCGCTTCCCTCG
14354903 CTG
1 CTG
14354906 TCGCCTCTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.07, C:0.44, G:0.22, T:0.27
Consensus pattern (21 bp):
CTGCAGCTGCCGCTTCCCTCG
Found at i:14355807 original size:113 final size:110
Alignment explanation
Indices: 14355521--14355848 Score: 410
Period size: 113 Copynumber: 3.0 Consensus size: 110
14355511 GAAAATAAGA
* * * * * * * *
14355521 TTAGTGGCGCTTTTGCT-AAAGCGCCGC-AAAAAACTAAGCACAACGACGCTGTTTTCTAAGCTT
1 TTAGCGGCGCTTTT-ATGAAAGCGCCGCAAAAAAATTAAACCCAACGACACCGTTTTCTTAGCTT
* * * *
14355584 CCGGGGGGTTTATCGGCGTTTTTAATAATGCGCCGCTAATGCAGGGT
65 TC-GGGGGTTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTGGGT
* * ** *
14355631 TTAGCGGC-ATTTTATGGAAGCATCGCAAAAAAATTAAACCCAACGACACCGTTTTCTTTGCTTT
1 TTAGCGGCGCTTTTATGAAAGCGCCGCAAAAAAATTAAACCCAACGACACCGTTTTCTTAGCTTT
* *
14355695 CGGGGGTTTAGCGGCGTTTTTAGTAAAGCGTCGCTAATGCTGGGTTT
66 CGGGGGTTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTGGG--T
14355742 TTAGCGGCGCTTTTATGAAAGCGCCGCAAAAAAAATTAAACCCAACGACACCGTTTTCTTAGCTT
1 TTAGCGGCGCTTTTATGAAAGCGCCGC-AAAAAAATTAAACCCAACGACACCGTTTTCTTAGCTT
*
14355807 TCAGGGGTTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCT
65 TCGGGGGTTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCT
14355849 CAGGGATTTA
Statistics
Matches: 185, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
108 1 0.01
109 49 0.26
110 37 0.20
111 9 0.05
112 14 0.08
113 75 0.41
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (110 bp):
TTAGCGGCGCTTTTATGAAAGCGCCGCAAAAAAATTAAACCCAACGACACCGTTTTCTTAGCTTT
CGGGGGTTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTGGGT
Found at i:14356209 original size:14 final size:14
Alignment explanation
Indices: 14356163--14356209 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
14356153 TGGTTTTATA
*
14356163 GTTTAGGGTTTAAG
1 GTTTATGGTTTAAG
* *
14356177 GGTTATGCTTTAAG
1 GTTTATGGTTTAAG
14356191 GTTTATGGTTTAAG
1 GTTTATGGTTTAAG
*
14356205 ATTTA
1 GTTTA
14356210 AGAGTTACAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (14 bp):
GTTTATGGTTTAAG
Found at i:14356350 original size:15 final size:14
Alignment explanation
Indices: 14356304--14356353 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 14
14356294 AGGGGTAACT
14356304 GGGTTTAGTGTTTA
1 GGGTTTAGTGTTTA
*
14356318 GGGTGTATAAT-TTTA
1 GGGT-T-TAGTGTTTA
14356333 GGGTTTAGTGTTTCA
1 GGGTTTAGTGTTT-A
14356348 GGGTTT
1 GGGTTT
14356354 TGATTAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
13 3 0.10
14 8 0.27
15 16 0.53
16 3 0.10
ACGTcount: A:0.16, C:0.02, G:0.34, T:0.48
Consensus pattern (14 bp):
GGGTTTAGTGTTTA
Found at i:14359480 original size:52 final size:52
Alignment explanation
Indices: 14359408--14359612 Score: 186
Period size: 52 Copynumber: 4.1 Consensus size: 52
14359398 GTATATAACT
*
14359408 TAATACATAATAACACAATACATAA-TTGGTATATAAGCTTGCATAACTTACA
1 TAATACATAATAACACAATACATAACTT-ATATATAAGCTTGCATAACTTACA
* *
14359460 TAATACATAATAACATAATACATAACTTATATATAAGCTTGTATAACTTACA
1 TAATACATAATAACACAATACATAACTTATATATAAGCTTGCATAACTTACA
* * *
14359512 TAATA-ACT--T----C----CGTAACTTATATATAATCTGAT-AAT-ACATTACA
1 TAATACA-TAATAACACAATACATAACTTATATATAAGCT--TGCATAAC-TTACA
* *
14359555 TAATACATAATAACATAATACATAACTTATATTATAATCTTGCATAACTTACA
1 TAATACATAATAACACAATACATAACTTATA-TATAAGCTTGCATAACTTACA
14359608 TAATA
1 TAATA
14359613 ACTTACATAT
Statistics
Matches: 124, Mismatches: 10, Indels: 37
0.73 0.06 0.22
Matches are distributed among these distances:
42 19 0.15
43 13 0.10
44 2 0.02
45 1 0.01
50 1 0.01
51 1 0.01
52 53 0.43
53 24 0.19
54 10 0.08
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (52 bp):
TAATACATAATAACACAATACATAACTTATATATAAGCTTGCATAACTTACA
Found at i:14359506 original size:21 final size:20
Alignment explanation
Indices: 14359480--14359537 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
14359470 TAACATAATA
*
14359480 CATAACTTATATATAAGCTTG
1 CATAACTTATATATAA-CTTC
* *
14359501 TATAACTTACATAATAACTTC
1 CATAACTTATAT-ATAACTTC
*
14359522 CGTAACTTATATATAA
1 CATAACTTATATATAA
14359538 TCTGATAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 4 0.13
21 22 0.73
22 4 0.13
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (20 bp):
CATAACTTATATATAACTTC
Found at i:14359559 original size:12 final size:14
Alignment explanation
Indices: 14359542--14359578 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
14359532 ATATAATCTG
14359542 ATAATACAT-T-AC
1 ATAATACATATAAC
14359554 ATAATACATAATAAC
1 ATAATACAT-ATAAC
14359569 ATAATACATA
1 ATAATACATA
14359579 ACTTATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.41
14 2 0.09
15 11 0.50
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATACATATAAC
Found at i:14359572 original size:8 final size:7
Alignment explanation
Indices: 14359542--14359579 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
14359532 ATATAATCTG
14359542 ATAATAC
1 ATAATAC
14359549 AT--TAC
1 ATAATAC
14359554 ATAATAC
1 ATAATAC
14359561 ATAATAAC
1 ATAAT-AC
14359569 ATAATAC
1 ATAATAC
14359576 ATAA
1 ATAA
14359580 CTTATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAATAC
Found at i:14359613 original size:22 final size:21
Alignment explanation
Indices: 14359542--14359621 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 21
14359532 ATATAATCTG
14359542 ATAAT-ACATTACATAA--TAC
1 ATAATAAC-TTACATAACTTAC
*
14359561 ATAATAACATAATACATAACTTAT
1 ATAATAAC-T--TACATAACTTAC
* *
14359585 ATTATAATCTTGCATAACTTAC
1 ATAATAA-CTTACATAACTTAC
14359607 ATAATAACTTACATA
1 ATAATAACTTACATA
14359622 TATTCATTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
19 5 0.10
20 4 0.08
21 7 0.14
22 23 0.47
24 9 0.18
25 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.35
Consensus pattern (21 bp):
ATAATAACTTACATAACTTAC
Found at i:14359796 original size:57 final size:57
Alignment explanation
Indices: 14359726--14359839 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
14359716 TTCATTTACG
14359726 TATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTA
1 TATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTA
*
14359783 TATGTAAGTTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTA
1 TATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTA
14359840 CTATTTTTTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (57 bp):
TATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTA
Found at i:14359858 original size:92 final size:91
Alignment explanation
Indices: 14359782--14359955 Score: 289
Period size: 92 Copynumber: 1.9 Consensus size: 91
14359772 AATAAGTATT
*
14359782 ATATGTAAGTTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTTT
1 ATATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTA-TTT
* *
14359847 TTTAATATTAT-ACATATATTCATTTA
65 TTTAATATTATAACATATAATAATTTA
14359873 CATATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTT
1 -ATATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTT
14359938 TTTAATATTAT-ACATATA
65 TTTAATATTATAACATATA
14359956 TTCATTTACA
Statistics
Matches: 81, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
91 21 0.26
92 60 0.74
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (91 bp):
ATATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTTT
TTAATATTATAACATATAATAATTTA
Found at i:14359938 original size:41 final size:41
Alignment explanation
Indices: 14359801--14359944 Score: 121
Period size: 41 Copynumber: 3.3 Consensus size: 41
14359791 TTATATTTAA
14359801 ATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACT
1 ATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACT
* * * ** *
14359842 ATTTTTTTAATATTATACATATATTCATTTACATATGTAAGCTATATTTA-A
1 ATTTTATTAATA--ATA-A-AT-TT-A-TAACTTAAATAAG---TA-TTACT
14359893 ATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACT
1 ATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACT
14359934 ATTTT-TTAATA
1 ATTTTATTAATA
14359945 TTATACATAT
Statistics
Matches: 79, Mismatches: 12, Indels: 25
0.68 0.10 0.22
Matches are distributed among these distances:
40 9 0.11
41 18 0.23
43 3 0.04
44 10 0.13
45 3 0.04
46 4 0.05
47 3 0.04
48 10 0.13
49 3 0.04
51 13 0.16
52 3 0.04
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (41 bp):
ATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACT
Found at i:14359946 original size:149 final size:149
Alignment explanation
Indices: 14359634--14359931 Score: 569
Period size: 149 Copynumber: 2.0 Consensus size: 149
14359624 TTCATTTACG
*
14359634 TATGTAAGCTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTTTT
1 TATGTAAGTTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTTTT
* *
14359699 TTAATATTGTACATATATTCATTTACGTATGTAAGCTATATTTAAATTTTATTAATAATAAATTT
66 TTAATATTATACATATATTCATTTACATATGTAAGCTATATTTAAATTTTATTAATAATAAATTT
14359764 ATAACTTAAATAAGTATTA
131 ATAACTTAAATAAGTATTA
14359783 TATGTAAGTTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTTTT
1 TATGTAAGTTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTTTT
14359848 TTAATATTATACATATATTCATTTACATATGTAAGCTATATTTAAATTTTATTAATAATAAATTT
66 TTAATATTATACATATATTCATTTACATATGTAAGCTATATTTAAATTTTATTAATAATAAATTT
14359913 ATAACTTAAATAAGTATTA
131 ATAACTTAAATAAGTATTA
14359932 CTATTTTTTA
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 146 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (149 bp):
TATGTAAGTTATATTTAAATTTTATTAATAATAAATTTATAACTTAAATAAGTATTACTATTTTT
TTAATATTATACATATATTCATTTACATATGTAAGCTATATTTAAATTTTATTAATAATAAATTT
ATAACTTAAATAAGTATTA
Found at i:14359984 original size:9 final size:9
Alignment explanation
Indices: 14359961--14360373 Score: 115
Period size: 9 Copynumber: 47.9 Consensus size: 9
14359951 ATATATTCAT
14359961 TTACATAAC
1 TTACATAAC
14359970 --ACATAAC
1 TTACATAAC
14359977 TTACATAAC
1 TTACATAAC
* *
14359986 CTACTTAA-
1 TTACATAAC
*
14359994 -TATATAAC
1 TTACATAAC
*
14360002 TTGCATAAC
1 TTACATAAC
* *
14360011 TTAAATAAG
1 TTACATAAC
**
14360020 TTATGTAA-
1 TTACATAAC
14360028 TAATACATAA-
1 T--TACATAAC
*
14360038 -TACACAAC
1 TTACATAAC
*
14360046 TTACAT-GC
1 TTACATAAC
* *
14360054 GTAAATAA-
1 TTACATAAC
* *
14360062 -TACAGAGC
1 TTACATAAC
14360070 TTACATAAC
1 TTACATAAC
*
14360079 TTACATACC
1 TTACATAAC
* *
14360088 CTACATAAA
1 TTACATAAC
* *
14360097 TTAAATAAG
1 TTACATAAC
14360106 TTACATAA-
1 TTACATAAC
*
14360114 TAATACATACC
1 T--TACATAAC
* *
14360125 CTACATAAA
1 TTACATAAC
* *
14360134 TTAAATAAG
1 TTACATAAC
14360143 TTACATAA-
1 TTACATAAC
*
14360151 TAATACATACC
1 T--TACATAAC
* *
14360162 CTACATAAA
1 TTACATAAC
* *
14360171 TTAAATAAG
1 TTACATAAC
14360180 TTACATAA-
1 TTACATAAC
*
14360188 TAATACATACC
1 T--TACATAAC
*
14360199 CTACATAAC
1 TTACATAAC
14360208 TTACATAA-
1 TTACATAAC
*
14360216 -GACATAAC
1 TTACATAAC
*
14360224 TTTCATAA-
1 TTACATAAC
*
14360232 -TACACAAC
1 TTACATAAC
**
14360240 TTACGCAAC
1 TTACATAAC
14360249 TTACATAA-
1 TTACATAAC
*
14360257 -GACATAAC
1 TTACATAAC
*
14360265 TTACAT--G
1 TTACATAAC
*
14360272 TGTAAATAA-
1 T-TACATAAC
**
14360281 -TACATATT
1 TTACATAAC
14360289 TTACATAAC
1 TTACATAAC
14360298 TTACATAA-
1 TTACATAAC
*
14360306 -GACATAAC
1 TTACATAAC
*
14360314 TTACATAAG
1 TTACATAAC
*
14360323 TTTCATAA-
1 TTACATAAC
* *
14360331 -TACACATC
1 TTACATAAC
**
14360339 TTACGCAAC
1 TTACATAAC
*
14360348 TTACACAAC
1 TTACATAAC
14360357 TTACATAAC
1 TTACATAAC
14360366 TTACATAA
1 TTACATAA
14360374 TGTATATCTT
Statistics
Matches: 290, Mismatches: 79, Indels: 70
0.66 0.18 0.16
Matches are distributed among these distances:
7 55 0.19
8 13 0.04
9 199 0.69
10 23 0.08
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.30
Consensus pattern (9 bp):
TTACATAAC
Found at i:14360124 original size:37 final size:37
Alignment explanation
Indices: 14360080--14360216 Score: 256
Period size: 37 Copynumber: 3.7 Consensus size: 37
14360070 TTACATAACT
14360080 TACATACCCTACATAAATTAAATAAGTTACATAATAA
1 TACATACCCTACATAAATTAAATAAGTTACATAATAA
14360117 TACATACCCTACATAAATTAAATAAGTTACATAATAA
1 TACATACCCTACATAAATTAAATAAGTTACATAATAA
14360154 TACATACCCTACATAAATTAAATAAGTTACATAATAA
1 TACATACCCTACATAAATTAAATAAGTTACATAATAA
* *
14360191 TACATACCCTACATAACTTACATAAG
1 TACATACCCTACATAAATTAAATAAG
14360217 ACATAACTTT
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.50, C:0.18, G:0.03, T:0.29
Consensus pattern (37 bp):
TACATACCCTACATAAATTAAATAAGTTACATAATAA
Found at i:14360220 original size:16 final size:16
Alignment explanation
Indices: 14360201--14360322 Score: 82
Period size: 16 Copynumber: 8.0 Consensus size: 16
14360191 TACATACCCT
14360201 ACATAACTTACATAAG
1 ACATAACTTACATAAG
* *
14360217 ACATAACTTTCATAAT
1 ACATAACTTACATAAG
*
14360233 ACACAACTTAC----G
1 ACATAACTTACATAAG
14360245 -C--AACTTACATAAG
1 ACATAACTTACATAAG
**
14360258 ACATAACTTACATGTG
1 ACATAACTTACATAAG
* **
14360274 TAAATAA--TACATATTTT
1 -ACATAACTTACATA--AG
14360291 ACATAACTTACATAAG
1 ACATAACTTACATAAG
14360307 ACATAACTTACATAAG
1 ACATAACTTACATAAG
14360323 TTTCATAATA
Statistics
Matches: 81, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
9 7 0.09
11 1 0.01
13 1 0.01
14 1 0.01
15 5 0.06
16 54 0.67
17 6 0.07
18 6 0.07
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.30
Consensus pattern (16 bp):
ACATAACTTACATAAG
Found at i:14360249 original size:25 final size:25
Alignment explanation
Indices: 14360221--14360352 Score: 70
Period size: 25 Copynumber: 5.3 Consensus size: 25
14360211 CATAAGACAT
* *
14360221 AACTTTCATAATACACAACTTACGC
1 AACTTACATAAGACACAACTTACGC
*
14360246 AACTTACATAAGACATAACTTA--C
1 AACTTACATAAGACACAACTTACGC
** * * * ** **
14360269 ATGTGTAAATAATACATATTTTACAT
1 AACT-TACATAAGACACAACTTACGC
* **
14360295 AACTTACATAAGACATAACTTACAT
1 AACTTACATAAGACACAACTTACGC
* * * *
14360320 AAGTTTCATAATACACATCTTACGC
1 AACTTACATAAGACACAACTTACGC
14360345 AACTTACA
1 AACTTACA
14360353 CAACTTACAT
Statistics
Matches: 79, Mismatches: 25, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
23 3 0.04
24 14 0.18
25 60 0.76
26 2 0.03
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.31
Consensus pattern (25 bp):
AACTTACATAAGACACAACTTACGC
Found at i:14365891 original size:21 final size:21
Alignment explanation
Indices: 14365867--14365920 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
14365857 GAGGCAGTAA
14365867 CGAGAGAAGCAGAGGCCACAG
1 CGAGAGAAGCAGAGGCCACAG
* **
14365888 CGAGATAAGCAGAGGCTGCAG
1 CGAGAGAAGCAGAGGCCACAG
*
14365909 TGAGAGAAGCAG
1 CGAGAGAAGCAG
14365921 CGAGAGAAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.19, G:0.39, T:0.06
Consensus pattern (21 bp):
CGAGAGAAGCAGAGGCCACAG
Found at i:14365925 original size:12 final size:12
Alignment explanation
Indices: 14365905--14365944 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
14365895 AGCAGAGGCT
*
14365905 GCAGTGAGAGAA
1 GCAGCGAGAGAA
14365917 GCAGCGAGAGAA
1 GCAGCGAGAGAA
14365929 GCAGCG-GTAGAA
1 GCAGCGAG-AGAA
14365941 GCAG
1 GCAG
14365945 AGGTTCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 1 0.04
12 25 0.96
ACGTcount: A:0.38, C:0.15, G:0.42, T:0.05
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:14366478 original size:43 final size:42
Alignment explanation
Indices: 14366408--14366701 Score: 398
Period size: 42 Copynumber: 7.0 Consensus size: 42
14366398 GTTTTTAAAC
*
14366408 AAGCGCCGCTATAGAACA-G-TACTTTTAGCGGCGTTT-TTGTCCT
1 AAGCGCCGCTAAAGAACATGAT-C-TTTAGCGGCGTTTATT-T-CT
14366451 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTT-CT
* *
14366494 TAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTATTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCT
* *
14366536 AAGCGCCGCTAAAGAACATGCTCTTTAGTGGCGTTTATTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCT
* * *
14366578 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCGTTTATTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCT
* * *
14366620 TAGCGCCGCTAAAGAACATGATCTTTAGCGGTGTTTCTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCT
* *
14366662 AAGCACCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTC
14366702 CTGTAAGCGC
Statistics
Matches: 231, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
41 4 0.02
42 150 0.65
43 72 0.31
44 4 0.02
45 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCT
Found at i:14370595 original size:21 final size:20
Alignment explanation
Indices: 14370556--14370595 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14370546 TAAACCTTAA
*
14370556 ACCCTAAAACCAACAACCAG
1 ACCCCAAAACCAACAACCAG
*
14370576 ACCCCAAAATCCAACCACCA
1 ACCCCAAAA-CCAACAACCA
14370596 ATATACCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.47, C:0.45, G:0.03, T:0.05
Consensus pattern (20 bp):
ACCCCAAAACCAACAACCAG
Found at i:14370977 original size:7 final size:7
Alignment explanation
Indices: 14370957--14371034 Score: 50
Period size: 7 Copynumber: 11.0 Consensus size: 7
14370947 ACTAAAGTAG
14370957 CCTAAAC
1 CCTAAAC
*
14370964 CCCAAAC
1 CCTAAAC
*
14370971 CTTAAAC
1 CCTAAAC
*
14370978 CCCAAAC
1 CCTAAAC
14370985 TCCTAAAC
1 -CCTAAAC
*
14370993 CTTAAAC
1 CCTAAAC
*
14371000 CCAAAAC
1 CCTAAAC
*
14371007 ACC-AAAA
1 -CCTAAAC
* *
14371014 CCTACAT
1 CCTAAAC
*
14371021 CATAAAC
1 CCTAAAC
14371028 CCTAAAC
1 CCTAAAC
14371035 TCAAAACACT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
6 2 0.04
7 42 0.81
8 8 0.15
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.14
Consensus pattern (7 bp):
CCTAAAC
Found at i:14370992 original size:22 final size:22
Alignment explanation
Indices: 14370967--14371016 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
14370957 CCTAAACCCC
* * *
14370967 AAACCTTAAACCCCAAACTCCT
1 AAACCTTAAACCCAAAACACCA
14370989 AAACCTTAAACCCAAAACACCA
1 AAACCTTAAACCCAAAACACCA
14371011 AAACCT
1 AAACCT
14371017 ACATCATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (22 bp):
AAACCTTAAACCCAAAACACCA
Found at i:14370993 original size:15 final size:14
Alignment explanation
Indices: 14370957--14371017 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
14370947 ACTAAAGTAG
14370957 CCTAAACCCCAAAC
1 CCTAAACCCCAAAC
*
14370971 CTTAAACCCCAAAC
1 CCTAAACCCCAAAC
**
14370985 TCCTAAACCTTAAAC
1 -CCTAAACCCCAAAC
* * *
14371000 CCAAAACACCAAAA
1 CCTAAACCCCAAAC
14371014 CCTA
1 CCTA
14371018 CATCATAAAC
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
14 25 0.69
15 11 0.31
ACGTcount: A:0.46, C:0.41, G:0.00, T:0.13
Consensus pattern (14 bp):
CCTAAACCCCAAAC
Found at i:14371267 original size:49 final size:47
Alignment explanation
Indices: 14371160--14371267 Score: 108
Period size: 49 Copynumber: 2.2 Consensus size: 47
14371150 ACTCTCAAAC
* * *
14371160 CCTAAACTAAAAACACTAAACCTACATCATAAACCCTAAACCTTAAA
1 CCTAAACCAAAAACACTAAACCTACATAATAAACCCTAAACCCTAAA
* * * * * *
14371207 CTGTAATCCAAAAATACTAAACATTATATAATGAACCCTAATACCCTAAA
1 C-CTAAACCAAAAACACTAAAC-CTACATAATAAACCCTAA-ACCCTAAA
14371257 CCTAAACCAAA
1 CCTAAACCAAA
14371268 TATGATAAAC
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
47 1 0.02
48 16 0.34
49 22 0.47
50 8 0.17
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.21
Consensus pattern (47 bp):
CCTAAACCAAAAACACTAAACCTACATAATAAACCCTAAACCCTAAA
Found at i:14371594 original size:114 final size:112
Alignment explanation
Indices: 14371343--14372109 Score: 684
Period size: 114 Copynumber: 6.7 Consensus size: 112
14371333 AAGATATTTT
* ** * *
14371343 GCGGCGCTTTTAACA-AAGCGCCACTAATTTTAGTATAAATCAAGACCAAAA-CGTTGCGTTTTT
1 GCGGCG-TTTTACCATAAGCGCCACTAATTCAAG-ATACATCAAGACCAAAATC--TGCGTTTTG
* * * * * * *
14371406 GTTATGGTATTTTGCGGAGCTAGCCACAAATCGCCGCTAATACTATGCTTTA
62 GTTAAGATATTTTGCGGCGCT-TCCAAAAAGCGCCGCTAATACTATCCTTTA
* * * * *
14371458 GCGGCGTTTCACCGTAATCGCCACTAAATCAAGATACATCAAGACCAAAATGTTGCGTTTTGGTT
1 GCGGCGTTTTACCATAAGCGCCACTAATTCAAGATACATCAAGACCAAAAT-CTGCGTTTTGGTT
* * * *
14371523 TAGATATTTTACGGCGCTTCCAAAAAGCACCG-TAAATACTATCCGTTA
65 AAGATATTTTGCGGCGCTTCCAAAAAGCGCCGCT-AATACTATCCTTTA
*** * * * *
14371571 GCGGCGTTTTTGTAATAAGCGCCACTAATTCTTACATACCTCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCG-TTTTACCATAAGCGCCACTAATTC-AAGATACATCAAGACCAAAATCTGCGTTTTGGT
* * *
14371636 TAAGATATTTTGCGGCGCTTTGCTAAAAGCGCCGCTAATACTATGCTTTA
64 TAAGATATTTTGCGGCGC-TTCCAAAAAGCGCCGCTAATACTATCCTTTA
* * * * * * *
14371686 ACGGTG-TTT-CCCTAAGCACCATTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGT
1 GCGGCGTTTTACCATAAGCGCCACTAATTCAAG-ATACATCAAGACCAAAA-TCTGCGTTTTGGT
* * * * * * *
14371749 TAAGATATTTTGCGGCGCTTCTCACAAAGCGTCGTTATTAATATTCTTTC
64 TAAGATATTTTGCGGCGCTTC-CAAAAAGCGCCGCTAATACTATCCTTTA
* * * * * *
14371799 GCGGCGGTTTACCGTAAGCGCCACTAATTTAATATACATCTAGACCAAAACGCTGCGTTTTGGTT
1 GCGGCGTTTTACCATAAGCGCCACTAATTCAAGATACATCAAGACCAAAA-TCTGCGTTTTGGTT
* ** * *
14371864 AAGATATTTTGCGGCGCTAGCCACGAATCGCCGCTAATACTATACTTTA
65 AAGATATTTTGCGGCGCT-TCCAAAAAGCGCCGCTAATACTATCCTTTA
* * * * *
14371913 GCGGCGTTTCACCGTAGGCGCCACTAATTC-TGTATACATCAAGACCAAAA-CGATGTGTTTTGG
1 GCGGCGTTTTACCATAAGCGCCACTAATTCAAG-ATACATCAAGACCAAAATC--TGCGTTTTGG
* * * * *
14371976 TTCAGATATTTTGCGGCGCTTCCATAAAGCGCCGCTATTACTGTCCTTTT
63 TTAAGATATTTTGCGGCGCTTCCAAAAAGCGCCGCTAATACTATCCTTTA
* * * *
14372026 GCGGCGTTTTCCCATAAACGCCACTAATTCTAAGATACCTCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTACCATAAGCGCCACTAATTC-AAGATACATCAAGACCAAAATCTGCGTTTTGGTT
14372091 AAGATATTTTGCGGCGCTT
65 AAGATATTTTGCGGCGCTT
14372110 AACGGTGTTT
Statistics
Matches: 525, Mismatches: 107, Indels: 42
0.78 0.16 0.06
Matches are distributed among these distances:
111 2 0.00
112 33 0.06
113 161 0.31
114 244 0.46
115 84 0.16
116 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (112 bp):
GCGGCGTTTTACCATAAGCGCCACTAATTCAAGATACATCAAGACCAAAATCTGCGTTTTGGTTA
AGATATTTTGCGGCGCTTCCAAAAAGCGCCGCTAATACTATCCTTTA
Found at i:14371767 original size:227 final size:227
Alignment explanation
Indices: 14371343--14372108 Score: 895
Period size: 227 Copynumber: 3.4 Consensus size: 227
14371333 AAGATATTTT
* * * *
14371343 GCGGCGCTTTTAACA-AAGCGCCACTAATTTTAGTATAAATCAAGACCAAAACGT-TGCGTTTTT
1 GCGGCG-TTTTACCATAAGCGCCACTAA-TTTAATATACATCAAGACCAAAAC-TCTGCGTTTTG
* * *
14371406 GTTATGGTATTTTGCGGAGCTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACC
63 GTTAAGATATTTTGCGGCGCTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACC
* * * * * *
14371471 GTAATCGCCACTAAATCAAG-ATACATCAAGACCAAAA-TGTTGCGTTTTGGTTTAGATATTTTA
128 GTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACT-ATGCGTTTTGGTTAAGATATTTTG
* * *
14371534 CGGCGCTTCCAAAAAGCACCGTAAATACTATCCGTTA
192 CGGCGCTTCCAAAAAGCGCCGT-ATTACTATCCTTTA
*** * * *
14371571 GCGGCGTTTTTGTAATAAGCGCCACTAATTCTTACATACCTCAAGACC-AAACTCTGCGTTTTGG
1 GCGGCG-TTTTACCATAAGCGCCACTAATT-TAATATACATCAAGACCAAAACTCTGCGTTTTGG
* * * * *
14371635 TTAAGATATTTTGCGGCGCTTTGCTA-AAAGCGCCGCTAATACTATGCTTTAACGGTGTTTC-CC
64 TTAAGATATTTTGCGGCGC-TAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACC
* *
14371698 -TAAGCACCATTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGC
128 GTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGC
* * * * *
14371762 GGCGCTTCTCACAAAGCGTCGTTATTAATATTCTTTC
193 GGCGCTTC-CAAAAAGCGCCG-TATTACTATCCTTTA
* * * *
14371799 GCGGCGGTTTACCGTAAGCGCCACTAATTTAATATACATCTAGACCAAAACGCTGCGTTTTGGTT
1 GCGGCGTTTTACCATAAGCGCCACTAATTTAATATACATCAAGACCAAAACTCTGCGTTTTGGTT
* *
14371864 AAGATATTTTGCGGCGCTAGCCACGAATCGCCGCTAATACTATACTTTAGCGGCGTTTCACCGTA
66 AAGATATTTTGCGGCGCTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACCGTA
* * * *
14371929 GGCGCCACTAATTCT-GTATACATCAAGACCAAAACGATGTGTTTTGGTTCAGATATTTTGCGGC
131 AGCGCCACTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGCGGC
* * *
14371993 GCTTCCATAAAGCGCCGCTATTACTGTCCTTTT
196 GCTTCCAAAAAGCGCCG-TATTACTATCCTTTA
* * * *
14372026 GCGGCGTTTTCCCATAAACGCCACTAATTCTAAGATACCTCAAGACC-AAACTCTGCGTTTTGGT
1 GCGGCGTTTTACCATAAGCGCCACTAATT-TAATATACATCAAGACCAAAACTCTGCGTTTTGGT
14372090 TAAGATATTTTGCGGCGCT
65 TAAGATATTTTGCGGCGCT
14372109 TAACGGTGTT
Statistics
Matches: 453, Mismatches: 72, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
226 31 0.07
227 213 0.47
228 166 0.37
229 43 0.09
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (227 bp):
GCGGCGTTTTACCATAAGCGCCACTAATTTAATATACATCAAGACCAAAACTCTGCGTTTTGGTT
AAGATATTTTGCGGCGCTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACCGTA
AGCGCCACTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGCGGC
GCTTCCAAAAAGCGCCGTATTACTATCCTTTA
Found at i:14371996 original size:341 final size:339
Alignment explanation
Indices: 14371358--14372109 Score: 847
Period size: 341 Copynumber: 2.2 Consensus size: 339
14371348 GCTTTTAACA
* * * * *
14371358 AAGCGCCACTAATTTTAGTATAAATCAAGACCAAAACGTTGCGTTTTTGTTATGGTATTTTGCGG
1 AAGCGCCACTAATTCTAGTATACATCAAGACCAAAAC-TTGCGTTTTGGTTAAGATATTTTGCGG
* * * * *
14371423 AGCTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACCGTAATCGCCACTAAATC
65 CGCT-TCCACAAAGCGCCGCTAATAATATGCTTTAGCGGCGTTTCACCGTAAGCGCCACTAAATC
* * * *
14371488 AAGATACATCAAGACCAAAATGTTGCGTTTTGGTTTAGATATTTTACGGCGCTTCCAAAAAGCAC
129 AAGATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTACGGCGCTGCCAAAAAGCAC
* *** *
14371553 CGTAAATACTATCCGTTAGCGGCGTTTTTGTAATAAGCGCCACTAATTCTTACATACCTCAAGAC
194 CGTAAATACTATACGTTAGCGGCGTTTTCACAATAAGCGCCACTAATTCTTA-ATACATCAAGAC
** * *
14371618 CAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTGC-TAAAAGCGCCGCTAATACTATGC
258 CAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGC-TTCCAT-AAAGCGCCGCTAATACTATCC
*
14371682 TTTAACGGTG-TTTCCC-T
321 TTTAACGGCGTTTTCCCAT
* *
14371699 AAGCACCATTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGCGG
1 AAGCGCCACTAATTCTAGTATACATCAAGACCAAAACT-TGCGTTTTGGTTAAGATATTTTGCGG
* * * * * *
14371764 CGCTTCTCACAAAGCGTCGTTATTAATATTCTTTCGCGGCGGTTT-ACCGTAAGCGCCACTAATT
65 CGCTTC-CACAAAGCGCCGCTAATAATATGCTTTAGCGGC-GTTTCACCGTAAGCGCCACTAAAT
* * * * ** *
14371828 TAATATACATCTAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCCACGAATC
128 CAAGATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTACGGCGCT-GCCAAAAAGC
* * ** *
14371893 GCCGCT-AATACTATACTTTAGCGGCG-TTTCACCGTAGGCGCCACTAATTCTGT-ATACATCAA
192 ACCG-TAAATACTATACGTTAGCGGCGTTTTCACAATAAGCGCCACTAATTCT-TAATACATCAA
* * * *
14371955 GACCAAAACGATGTGTTTTGGTTCAGATATTTTGCGGCGCTTCCATAAAGCGCCGCTATTACTGT
255 GACC-AAACGATGCGTTTTGGTTAAGATATTTTGCGGCGCTTCCATAAAGCGCCGCTAATACTAT
**
14372020 CCTTTTGCGGCGTTTTCCCAT
319 CCTTTAACGGCGTTTTCCCAT
* *
14372041 AAACGCCACTAATTCTAAG-ATACCTCAAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCG
1 AAGCGCCACTAATTCT-AGTATACATCAAGACCAAAACT-TGCGTTTTGGTTAAGATATTTTGCG
14372104 GCGCTT
64 GCGCTT
14372110 AACGGTGTTT
Statistics
Matches: 345, Mismatches: 55, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
340 42 0.12
341 242 0.70
342 58 0.17
343 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (339 bp):
AAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTTGCGTTTTGGTTAAGATATTTTGCGGC
GCTTCCACAAAGCGCCGCTAATAATATGCTTTAGCGGCGTTTCACCGTAAGCGCCACTAAATCAA
GATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTACGGCGCTGCCAAAAAGCACCG
TAAATACTATACGTTAGCGGCGTTTTCACAATAAGCGCCACTAATTCTTAATACATCAAGACCAA
ACGATGCGTTTTGGTTAAGATATTTTGCGGCGCTTCCATAAAGCGCCGCTAATACTATCCTTTAA
CGGCGTTTTCCCAT
Found at i:14372321 original size:112 final size:112
Alignment explanation
Indices: 14372116--14372326 Score: 257
Period size: 112 Copynumber: 1.9 Consensus size: 112
14372106 GCTTAACGGT
* * *
14372116 GTTTTCCCGTAAACGCCACTACTTTTAGGATACATCAAGACCGAAACGAAGCGTTTTGGTTAAGA
1 GTTTTCCCATAAACGCCACTAATTCTAGGATACATCAAGACCGAAACGAAGCGTTTTGGTTAAGA
* * * * * * *
14372181 TATTTTGCGGCGCTTTTTGGAAGCCGCCGGTAATACGCTGTAGCGGC
66 GATTTCGCGGCACATTGTGGAAGACGCCGCTAATACGCTGTAGCGGC
* * *
14372228 GTTTTCCCATAATCGCCACTAATTCTAGTATACATCAAGA-CGAAAAC-ACTGCGTTTTGGTTAA
1 GTTTTCCCATAAACGCCACTAATTCTAGGATACATCAAGACCG-AAACGA-AGCGTTTTGGTTAA
14372291 GAGATTTCGCGGCACATTGTGGTAA-ACGCCGCTAAT
64 GAGATTTCGCGGCACATTGTGG-AAGACGCCGCTAAT
14372327 GATGTTCTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
111 3 0.04
112 78 0.94
113 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (112 bp):
GTTTTCCCATAAACGCCACTAATTCTAGGATACATCAAGACCGAAACGAAGCGTTTTGGTTAAGA
GATTTCGCGGCACATTGTGGAAGACGCCGCTAATACGCTGTAGCGGC
Done.