Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 50 of 216
Found at i:14373009 original size:26 final size:27
Alignment explanation
Indices: 14372969--14373030 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
14372959 TTGGAGATCG
* *
14372969 ATTTTTTTATCTTTT-CAATTATTTTT
1 ATTTTTTTATCTTTTGAAATTAATTTT
* *
14372995 ATTTTTTTCTTTTTTGAAATTAATTTT
1 ATTTTTTTATCTTTTGAAATTAATTTT
14373022 ATTTTTTTA
1 ATTTTTTTA
14373031 ATAAAAGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 13 0.43
27 17 0.57
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.73
Consensus pattern (27 bp):
ATTTTTTTATCTTTTGAAATTAATTTT
Found at i:14377497 original size:16 final size:16
Alignment explanation
Indices: 14377472--14377514 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14377462 ATAATTTACC
* * *
14377472 TTAATTATTTTTATTT
1 TTAATAATTTTAAATT
14377488 TTAATAATTTTAAATT
1 TTAATAATTTTAAATT
14377504 TTAATTAATTT
1 TTAA-TAATTT
14377515 ATGGATGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAATAATTTTAAATT
Found at i:14379991 original size:18 final size:17
Alignment explanation
Indices: 14379946--14379993 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
14379936 GAAAACGCAC
*
14379946 GAAAAAGAAGAAAGAAG
1 GAAAAAGAAAAAAGAAG
**
14379963 GAAAATTAAAACAAGAAG
1 GAAAAAGAAAA-AAGAAG
14379981 GAAAAAGAAAAAA
1 GAAAAAGAAAAAA
14379994 ACAGACATGA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.73, C:0.02, G:0.21, T:0.04
Consensus pattern (17 bp):
GAAAAAGAAAAAAGAAG
Found at i:14381909 original size:21 final size:21
Alignment explanation
Indices: 14381883--14381922 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14381873 ATCTGATAAG
14381883 TAAATTCATAT-AATTAATATT
1 TAAATT-ATATGAATTAATATT
*
14381904 TAAATTATATGAGTTAATA
1 TAAATTATATGAATTAATA
14381923 ATAATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (21 bp):
TAAATTATATGAATTAATATT
Found at i:14383617 original size:39 final size:40
Alignment explanation
Indices: 14383420--14383615 Score: 232
Period size: 40 Copynumber: 4.9 Consensus size: 40
14383410 TTATATTATA
* * *
14383420 TACTGAAATGTATGCACTTTCGATCCATGCATACTGAATC
1 TACTGAAATGTATGCACTTTCGAGCCATACCTACTGAATC
* * *
14383460 TACTGAAATGTATGCGCTTTCGAGCTATATCTACTGAATC
1 TACTGAAATGTATGCACTTTCGAGCCATACCTACTGAATC
* * *
14383500 TACCGAAATGTATGCTCTTTCGAGCCATACCTATTGAATC
1 TACTGAAATGTATGCACTTTCGAGCCATACCTACTGAATC
** * * * *
14383540 TACCAAAAAGCATGCACTTTCGAGCCATACCTACTGATTT
1 TACTGAAATGTATGCACTTTCGAGCCATACCTACTGAATC
* *
14383580 TACTGAAA-GTATGCCCTATCGAGCCATACCTACTGA
1 TACTGAAATGTATGCACTTTCGAGCCATACCTACTGA
14383616 TTATATTGAA
Statistics
Matches: 133, Mismatches: 23, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
39 25 0.19
40 108 0.81
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (40 bp):
TACTGAAATGTATGCACTTTCGAGCCATACCTACTGAATC
Found at i:14391993 original size:17 final size:18
Alignment explanation
Indices: 14391971--14392011 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
14391961 TTAAAAAATG
14391971 GGCCCACACA-CTC-ATGT
1 GGCCCACACAGCTCAAT-T
*
14391988 GGCCCATACAGCTCAATT
1 GGCCCACACAGCTCAATT
14392006 GGCCCA
1 GGCCCA
14392012 ACCCGTGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 9 0.43
18 10 0.48
19 2 0.10
ACGTcount: A:0.24, C:0.39, G:0.20, T:0.17
Consensus pattern (18 bp):
GGCCCACACAGCTCAATT
Found at i:14396089 original size:21 final size:21
Alignment explanation
Indices: 14396063--14396114 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
14396053 GCGGTGGCGG
*
14396063 TGAGATTAGTTACTGTAGCGA
1 TGAGATTAGATACTGTAGCGA
* *
14396084 TGAGATTGGATACTGTAGCGG
1 TGAGATTAGATACTGTAGCGA
14396105 TGAGATTAGA
1 TGAGATTAGA
14396115 AACAATGGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (21 bp):
TGAGATTAGATACTGTAGCGA
Found at i:14405867 original size:31 final size:31
Alignment explanation
Indices: 14405832--14405893 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
14405822 AGATAATTTT
14405832 AAAGAATGTTATTAGGATTCAATTACTCTTG
1 AAAGAATGTTATTAGGATTCAATTACTCTTG
* *
14405863 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAATGTTATTAGGATTCAATTACTCTTG
14405894 TAATTTGCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (31 bp):
AAAGAATGTTATTAGGATTCAATTACTCTTG
Found at i:14406200 original size:3 final size:3
Alignment explanation
Indices: 14406192--14406220 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14406182 AAATCTATCC
14406192 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14406221 TAACTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14415454 original size:12 final size:12
Alignment explanation
Indices: 14415428--14415466 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14415418 TTTGTGTTTG
14415428 TATATATATTAAT
1 TATATATA-TAAT
14415441 TATATATATAAT
1 TATATATATAAT
* *
14415453 TATAAATTTAAT
1 TATATATATAAT
14415465 TA
1 TA
14415467 CTTTTGGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 16 0.67
13 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TATATATATAAT
Found at i:14417038 original size:33 final size:32
Alignment explanation
Indices: 14416991--14417056 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
14416981 ATGTATGAAT
* *
14416991 TGATTGTTGCATGTATATGGCTTAGGTAAGAAG
1 TGATTGTTGCATGTATAAGGCCTAGGTAA-AAG
*
14417024 TGATTGTTGTATGTATAAGGCCTAGGTAAAAG
1 TGATTGTTGCATGTATAAGGCCTAGGTAAAAG
14417056 T
1 T
14417057 TTGCGTTAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.36
Consensus pattern (32 bp):
TGATTGTTGCATGTATAAGGCCTAGGTAAAAG
Found at i:14421766 original size:25 final size:25
Alignment explanation
Indices: 14421719--14421778 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 25
14421709 CTAGGCACCC
14421719 ATTTTATTATTCATATAATATAAAAAT
1 ATTTTATTATT-ATATAATAT-AAAAT
14421746 ATTTTATTATT-TATACA-ATAAAAT
1 ATTTTATTATTATATA-ATATAAAAT
14421770 ATGTTTATT
1 AT-TTTATT
14421779 GGTGACTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 7 0.23
25 12 0.39
26 1 0.03
27 11 0.35
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (25 bp):
ATTTTATTATTATATAATATAAAAT
Found at i:14424378 original size:28 final size:27
Alignment explanation
Indices: 14424347--14424406 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
14424337 TATATTTATC
* * *
14424347 AAAATTTATAAATAGTTTTAATAAAATA
1 AAAATTAAAAAATA-TTATAATAAAATA
* *
14424375 AAAACTAAAAAATATTATAATTAAATA
1 AAAATTAAAAAATATTATAATAAAATA
14424402 AAAAT
1 AAAAT
14424407 AATTTTTGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAATTAAAAAATATTATAATAAAATA
Found at i:14434607 original size:17 final size:17
Alignment explanation
Indices: 14434585--14434617 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14434575 TTGATTACCG
14434585 AATTAAATTAATTCAAT
1 AATTAAATTAATTCAAT
*
14434602 AATTAATTTAATTCAA
1 AATTAAATTAATTCAA
14434618 GCGAAACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTAAATTAATTCAAT
Found at i:14436573 original size:24 final size:25
Alignment explanation
Indices: 14436538--14436590 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
14436528 AAAGTAAAAA
14436538 AAATTGTGTATT-TAAATGATATAT-
1 AAATTGTGTATTGT-AATGATATATG
*
14436562 AAATTCGT-TATTGTTATGATATATG
1 AAATT-GTGTATTGTAATGATATATG
14436587 AAAT
1 AAAT
14436591 ATATAAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (25 bp):
AAATTGTGTATTGTAATGATATATG
Found at i:14438665 original size:27 final size:28
Alignment explanation
Indices: 14438617--14438683 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
14438607 TTTTTTACAA
* *
14438617 ATATTAAATTATTTATATAATTTTATTAT
1 ATATTATATT-TTTATAAAATTTTATTAT
*
14438646 ATATTATATTTTT-TAAAATTTTATTTT
1 ATATTATATTTTTATAAAATTTTATTAT
*
14438673 CTATTAT-TTTT
1 ATATTATATTTT
14438684 AATGTTGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.12
27 18 0.53
28 3 0.09
29 9 0.26
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (28 bp):
ATATTATATTTTTATAAAATTTTATTAT
Found at i:14440362 original size:17 final size:19
Alignment explanation
Indices: 14440342--14440382 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
14440332 ATAACTTTAA
*
14440342 AAAATATA-TAATA-CATC
1 AAAATATACTAAAATCATC
14440359 AAAA-ATACTAAAATCATC
1 AAAATATACTAAAATCATC
14440377 AAAATA
1 AAAATA
14440383 AATATTTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 8 0.40
19 1 0.05
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAATATACTAAAATCATC
Found at i:14440364 original size:18 final size:18
Alignment explanation
Indices: 14440341--14440380 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
14440331 TATAACTTTA
*
14440341 AAAAATA-TATAATACATC
1 AAAAATACTAAAAT-CATC
14440359 AAAAATACTAAAATCATC
1 AAAAATACTAAAATCATC
14440377 AAAA
1 AAAA
14440381 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATACTAAAATCATC
Found at i:14442964 original size:38 final size:38
Alignment explanation
Indices: 14442854--14442965 Score: 179
Period size: 40 Copynumber: 2.9 Consensus size: 38
14442844 ATCTTCAAGG
* *
14442854 ATATGCAATCTTAGATATGATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATGATATGCAATCTTGGATATA
14442892 ATATGCAATCTTAGATATGATATATGCAATCTTGGATATA
1 ATATGCAATCTTAGATATG--ATATGCAATCTTGGATATA
*
14442932 ATATGCAATCTTGGATATGATATGCAATCTTGGA
1 ATATGCAATCTTAGATATGATATGCAATCTTGGA
14442966 AGATATGATT
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 34 0.49
40 35 0.51
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (38 bp):
ATATGCAATCTTAGATATGATATGCAATCTTGGATATA
Found at i:14442965 original size:19 final size:19
Alignment explanation
Indices: 14442853--14442962 Score: 175
Period size: 19 Copynumber: 5.7 Consensus size: 19
14442843 AATCTTCAAG
14442853 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14442872 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14442891 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14442910 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
* *
14442931 AATATGCAATCTTGGATAT
1 GATATGCAATCTTAGATAT
14442950 GATATGCAATCTT
1 GATATGCAATCTT
14442963 GGAAGATATG
Statistics
Matches: 86, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
19 69 0.80
21 17 0.20
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14450095 original size:88 final size:88
Alignment explanation
Indices: 14449933--14450599 Score: 947
Period size: 88 Copynumber: 7.6 Consensus size: 88
14449923 AGCAGATTAG
* * * * * *
14449933 TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACCAACCTTGCTT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
*
14449998 CCCTGGGTTGTAGCGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * * * *
14450021 TAAAAATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATTGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
* *
14450086 CCCTAGGTTGTAGTGAAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* *
14450109 TAAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAATATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
* *
14450174 CCCTGGGTCGTAGTGGATCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* *
14450197 TGAAAATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
*
14450262 CCCTGGGTTGTAGTGGAGTAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * * * * *
14450285 TGAAGATAGCAGATATTACCTTCCTGCATCAACAGCGAAGCAGATCGAAAATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
14450350 CCCTGGGTTGTAGTGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * *
14450373 TGAAGATAGCAGATCTTGCTTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCATTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
*
14450438 CCCTGGGTCGTAGTGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * *
14450461 TGAAGATAGCAGATCTTGCTTTCCTGTATCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
* *
14450526 CTCTGGGCTGTAGTGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * * * ** *
14450549 TGAAGATAGTAGATCTTGTCTTCCTATACTGATGGCGAAGTAGATCGAAGA
1 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGA
14450600 AAGTAGATCT
Statistics
Matches: 517, Mismatches: 62, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 517 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (88 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
CCCTGGGTTGTAGTGGAGCAGGT
Found at i:14450127 original size:44 final size:43
Alignment explanation
Indices: 14449991--14450134 Score: 128
Period size: 44 Copynumber: 3.3 Consensus size: 43
14449981 AGACACCAAC
* * *
14449991 CTTGCTTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCT-GGTTGTAGCGAAGCAGGTTAAAGATAGCAGAT
* * * * * * * *
14450035 CTTGCCTTCCTGCATCGACAGCGAAGCAGATTGAAGATACCAG-C
1 CTTGCCTCCCTG-GTTG-TAGCGAAGCAGGTTAAAGATAGCAGAT
*
14450079 CTTGCCTCCCTAGGTTGTAGTGAAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTCCCT-GGTTGTAGCGAAGCAGGTTAAAGATAGCAGAT
*
14450123 CTTGCCTTCCTG
1 CTTGCCTCCCTG
14450135 TACCGACAGC
Statistics
Matches: 75, Mismatches: 21, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
43 22 0.29
44 33 0.44
45 20 0.27
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (43 bp):
CTTGCCTCCCTGGTTGTAGCGAAGCAGGTTAAAGATAGCAGAT
Found at i:14450614 original size:45 final size:44
Alignment explanation
Indices: 14450550--14450730 Score: 174
Period size: 42 Copynumber: 4.1 Consensus size: 44
14450540 GGAGCAGGTT
* *
14450550 GAAGATAGTAGATCTTGTCTTCCTATACTGATGGCGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATACT-ATGGCGAAGTAGATC
* * *
14450595 GAAGAAAGTAGATCTTGTCTTCATGTA-T-TGGCGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATACTATGGCGAAGTAGATC
* *
14450637 GAAGAAAGCAGATCTTGTCTT-C-AT-GTATCGGCATGAAATAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATACTAT-GGC--GAAGTAGATC
* ** * *
14450681 AAAGGTAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATACT-ATGGCGAAGTAGATC
14450726 GAAGA
1 GAAGA
14450731 TACAAGTCTT
Statistics
Matches: 112, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 37 0.33
44 28 0.25
45 37 0.33
46 2 0.02
47 4 0.04
48 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (44 bp):
GAAGAAAGCAGATCTTGTCTTCCTATACTATGGCGAAGTAGATC
Found at i:14451121 original size:21 final size:19
Alignment explanation
Indices: 14451075--14451149 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
14451065 AATCTTCAAG
14451075 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14451094 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14451113 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
14451134 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14451150 AGATACGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14462351 original size:18 final size:18
Alignment explanation
Indices: 14462328--14462363 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14462318 TTCTAATTAA
14462328 AACCCCTATCGTTGGATT
1 AACCCCTATCGTTGGATT
14462346 AACCCCTATCGTTGGATT
1 AACCCCTATCGTTGGATT
14462364 CTCTTATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (18 bp):
AACCCCTATCGTTGGATT
Found at i:14464808 original size:5 final size:6
Alignment explanation
Indices: 14464794--14464863 Score: 50
Period size: 6 Copynumber: 10.5 Consensus size: 6
14464784 GAAGTCTAAG
*
14464794 AAAATA AAAATAA AACAACTA AAAACA AAAATA AAAATTTTAA AAAATA
1 AAAATA AAAAT-A AA-AA-TA AAAATA AAAATA AAAA---T-A AAAATA
* *
14464843 AAAATA AAAGTA AAAAGA AAA
1 AAAATA AAAATA AAAATA AAA
14464864 GAAATAAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
6 34 0.65
7 6 0.12
8 5 0.10
9 2 0.04
10 5 0.10
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:14484943 original size:16 final size:17
Alignment explanation
Indices: 14484911--14484945 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14484901 TAGAATTGGG
*
14484911 TTGAAAAAATTATTTAA
1 TTGAAAAAATTAATTAA
14484928 TTGAAAAAA-TAATTAA
1 TTGAAAAAATTAATTAA
14484944 TT
1 TT
14484946 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (17 bp):
TTGAAAAAATTAATTAA
Found at i:14487845 original size:17 final size:17
Alignment explanation
Indices: 14487823--14487858 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
14487813 CTTCTATAGT
14487823 ATGTAGCATCATTCACA
1 ATGTAGCATCATTCACA
14487840 ATGTAGCATCATTCACA
1 ATGTAGCATCATTCACA
14487857 AT
1 AT
14487859 AGTGGAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (17 bp):
ATGTAGCATCATTCACA
Found at i:14494593 original size:14 final size:15
Alignment explanation
Indices: 14494567--14494595 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14494557 TGTTATAGAA
14494567 TAAATAGACAAAGAG
1 TAAATAGACAAAGAG
14494582 TAAATA-ACAAAGAG
1 TAAATAGACAAAGAG
14494596 AATGGGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.14
Consensus pattern (15 bp):
TAAATAGACAAAGAG
Found at i:14525380 original size:38 final size:38
Alignment explanation
Indices: 14525338--14525458 Score: 147
Period size: 38 Copynumber: 3.2 Consensus size: 38
14525328 GTTGTATATT
*
14525338 GTTATATTACTCGAGAATCTGCAACTAGACTAGATCTC
1 GTTATATTACACGAGAATCTGCAACTAGACTAGATCTC
* * *
14525376 GTTATATTACCCGAGAATCTACAA-TAAGGCTAGATCTC
1 GTTATATTACACGAGAATCTGCAACT-AGACTAGATCTC
* *
14525414 GTTATATTACACGAGAATCTGTAAC-AAATGCTAGATCTC
1 GTTATATTACACGAGAATCTGCAACTAGA--CTAGATCTC
14525453 GTTATA
1 GTTATA
14525459 ATCTATAATA
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
37 2 0.03
38 54 0.76
39 15 0.21
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (38 bp):
GTTATATTACACGAGAATCTGCAACTAGACTAGATCTC
Found at i:14527090 original size:45 final size:45
Alignment explanation
Indices: 14527018--14527278 Score: 369
Period size: 45 Copynumber: 5.8 Consensus size: 45
14527008 GTCTGATTCA
* * * * *
14527018 TGATTCCATAGCGTCCTTCAACTATGGTCTTACTCGTTAGAATCG
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATCG
* * *
14527063 TGATGCCATGACGTCTTTCAGCTATGGTCTTACTCATTAAAATCA
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATCG
* **
14527108 TGATGTCATAACGTCTTTCAAATATGGTCTTACTCGTTAAAATCG
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATCG
* *
14527153 TGATGCCATAACGTCTTTCAGCTGTGGTCTTACTCGTTAAAATTG
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATCG
* *
14527198 TGATGCCATAACATCTTTCAGCTATGGTCTTACTCTTTAAAATCG
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATCG
* *
14527243 TGATGCCATAACGTCTATCAGCTGTGGTCTTACTCG
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCG
14527279 CAATTGTATT
Statistics
Matches: 189, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 189 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (45 bp):
TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATCG
Found at i:14527216 original size:135 final size:141
Alignment explanation
Indices: 14527015--14527409 Score: 426
Period size: 135 Copynumber: 2.7 Consensus size: 141
14527005 TTTGTCTGAT
* * * * * * * * *
14527015 TCATGATTCCATAGCGTCCTTCAACTATGGTCTTACTCGTTAGAATCGTGATGCCATGACGTCTT
1 TCATGATGCCATAACGTCTTTCAGCTGTGGTCTTACTCGTTAAAATTGTGATGCCATAACATCTT
* *
14527080 TCAGCTATGGTCTTACTCATTAAAATCATGATGTCATAACG-T-CT-T-TC-AAAT-ATGGTCTT
66 TCAGCTATGGTCTTACTCATTAAAATCATGATGCCATAACGTTACTGTGTCTAAATCATGGTATT
14527139 ACTCGTTAAAA
131 ACTCGTTAAAA
*
14527150 TCGTGATGCCATAACGTCTTTCAGCTGTGGTCTTACTCGTTAAAATTGTGATGCCATAACATCTT
1 TCATGATGCCATAACGTCTTTCAGCTGTGGTCTTACTCGTTAAAATTGTGATGCCATAACATCTT
* * * *
14527215 TCAGCTATGGTCTTACTCTTTAAAATCGTGATGCCATAACGTCTATCAGCTGTGGTCTTACTCGC
66 TCAGCTATGGTCTTACTCATTAAAATCATGATGCCATAACG--T-T-A-CTGT-GTCTAAAT--C
*
14527280 AATTGTATTACTCGTTAAAA
123 -ATGGTATTACTCGTTAAAA
* *
14527300 TCATGATGCCATAACATCTTTCAGCTATGCTATGGTCTTACTCGTTAAAACTGTGATGCCATAAC
1 TCATGATGCCATAACGTCTTTCAGC--TG---TGGTCTTACTCGTTAAAATTGTGATGCCATAAC
*
14527365 CTCTTTCAGCTATGGTCTTACT-AGTTAAAATCATGATGCCATAAC
61 ATCTTTCAGCTATGGTCTTACTCA-TTAAAATCATGATGCCATAAC
14527410 ATTTTTTAGC
Statistics
Matches: 216, Mismatches: 23, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
135 93 0.43
139 1 0.00
142 2 0.01
143 1 0.00
145 2 0.01
146 2 0.01
150 40 0.19
152 2 0.01
155 73 0.34
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (141 bp):
TCATGATGCCATAACGTCTTTCAGCTGTGGTCTTACTCGTTAAAATTGTGATGCCATAACATCTT
TCAGCTATGGTCTTACTCATTAAAATCATGATGCCATAACGTTACTGTGTCTAAATCATGGTATT
ACTCGTTAAAA
Found at i:14527362 original size:50 final size:49
Alignment explanation
Indices: 14527287--14527423 Score: 176
Period size: 45 Copynumber: 2.8 Consensus size: 49
14527277 CGCAATTGTA
14527287 TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGCTATGCTATGGTC
1 TTACTCGTTAAAATCATGATGCCATAACATCTTT-AGCTATGCTATGGTC
* *
14527337 TTACTCGTTAAAA-CTGTGATGCCATAACCTCTTT--C-A-GCTATGGTC
1 TTACTCGTTAAAATC-ATGATGCCATAACATCTTTAGCTATGCTATGGTC
* *
14527382 TTACTAGTTAAAATCATGATGCCATAACATTTTTTAGCTATG
1 TTACTCGTTAAAATCATGATGCCATAACA-TCTTTAGCTATG
14527424 GTCTTATTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
45 33 0.45
46 6 0.08
47 1 0.01
48 1 0.01
49 2 0.03
50 31 0.42
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (49 bp):
TTACTCGTTAAAATCATGATGCCATAACATCTTTAGCTATGCTATGGTC
Found at i:14527375 original size:110 final size:105
Alignment explanation
Indices: 14527182--14527386 Score: 295
Period size: 110 Copynumber: 1.9 Consensus size: 105
14527172 AGCTGTGGTC
** *
14527182 TTACTCGTTAAAATTGTGATGCCATAACATCTTTCAGCTATGGTCTTACTCTTTAAAATCGTGAT
1 TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAATCGTGAT
* *
14527247 GCCATAACGTCTATCAGCTGTGGTCTTACTCGCAATTGTA
66 GCCATAACCTCTATCAGCTATGGTCTTACTCGCAATTGTA
14527287 TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGCTATGCTATGGTCTTACTCGTTAAAA-C
1 TTACTCGTTAAAATCATGATGCCATAACATCTTT---C-A-GCTATGGTCTTACTCGTTAAAATC
*
14527351 TGTGATGCCATAACCTCTTTCAGCTATGGTCTTACT
61 -GTGATGCCATAACCTCTATCAGCTATGGTCTTACT
14527387 AGTTAAAATC
Statistics
Matches: 88, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
105 32 0.36
108 1 0.01
109 2 0.02
110 53 0.60
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (105 bp):
TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAATCGTGAT
GCCATAACCTCTATCAGCTATGGTCTTACTCGCAATTGTA
Found at i:14527426 original size:155 final size:150
Alignment explanation
Indices: 14527137--14527429 Score: 433
Period size: 155 Copynumber: 1.9 Consensus size: 150
14527127 AAATATGGTC
* * *
14527137 TTACTCGTTAAAATCGTGATGCCATAACGTCTTTCAGCTGTGGTCTTACTCGTTAAAATTGTGAT
1 TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGCTGTGGTCTTACTCGTTAAAACTGTGAT
** * * *
14527202 GCCATAACATCTTTCAGCTATGGTCTTACTCTTTAAAATCGTGATGCCATAACGTCTATCAGCTG
66 GCCATAACATCTTTCAGCTATGGTCTTACTAGTTAAAATCATGATGCCATAACATCTATCAGCTA
14527267 TGGTCTTACTCGCAATTGTA
131 TGGTCTTACTCGCAATTGTA
14527287 TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGCTATGCTATGGTCTTACTCGTTAAAACT
1 TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGC--TG---TGGTCTTACTCGTTAAAACT
* * * *
14527352 GTGATGCCATAACCTCTTTCAGCTATGGTCTTACTAGTTAAAATCATGATGCCATAACATTTTTT
61 GTGATGCCATAACATCTTTCAGCTATGGTCTTACTAGTTAAAATCATGATGCCATAACATCTATC
14527417 AGCTATGGTCTTA
126 AGCTATGGTCTTA
14527430 TTCAGTTCTG
Statistics
Matches: 126, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
150 36 0.29
152 2 0.02
155 88 0.70
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (150 bp):
TTACTCGTTAAAATCATGATGCCATAACATCTTTCAGCTGTGGTCTTACTCGTTAAAACTGTGAT
GCCATAACATCTTTCAGCTATGGTCTTACTAGTTAAAATCATGATGCCATAACATCTATCAGCTA
TGGTCTTACTCGCAATTGTA
Found at i:14528077 original size:17 final size:17
Alignment explanation
Indices: 14528055--14528091 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
14528045 TCAAGTCCTT
14528055 ACATTTTTA-TCACTTTA
1 ACATTTTTAGTC-CTTTA
14528072 ACA-TTTTAGTCCTTTA
1 ACATTTTTAGTCCTTTA
14528088 ACAT
1 ACAT
14528092 AAAATTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.49
Consensus pattern (17 bp):
ACATTTTTAGTCCTTTA
Found at i:14530678 original size:27 final size:27
Alignment explanation
Indices: 14530648--14530824 Score: 177
Period size: 27 Copynumber: 6.6 Consensus size: 27
14530638 ATTCATGGGC
**
14530648 AAATGACCAAAATACCCTC-AAAGGATA
1 AAATGACTGAAATACCCTCGAAAGG-TA
*
14530675 AAATGACTGAAATACCC-CTAAAGGGTA
1 AAATGACTGAAATACCCTCGAAA-GGTA
* * *
14530702 AAATGATTGAAATACCCCCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAAGGTA
*
14530729 AAATGACAGAAATACCCTCGAAAGGT-
1 AAATGACTGAAATACCCTCGAAAGGTA
* *
14530755 AAAT-AATCGAAATACCCTCG-GAGGATA
1 AAATGACT-GAAATACCCTCGAAAGG-TA
* *
14530782 AAATAATTGAAATACCC-CGAAAGGTA
1 AAATGACTGAAATACCCTCGAAAGGTA
14530808 AAATGACTGAAATACCC
1 AAATGACTGAAATACCC
14530825 CTATAGGGTA
Statistics
Matches: 126, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
25 4 0.03
26 37 0.29
27 78 0.62
28 7 0.06
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.18
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGAAAGGTA
Found at i:14530820 original size:53 final size:53
Alignment explanation
Indices: 14530648--14530824 Score: 205
Period size: 53 Copynumber: 3.3 Consensus size: 53
14530638 ATTCATGGGC
** * *
14530648 AAATGACCAAAATACCCTCAAAGGATAAAATGACTGAAATACCCCTAAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGATAAAATGACTGAAATACCCCGAAA-GGTA
* * * *
14530702 AAATGATTGAAATACCCCCGAAGGGTAAAATGACAGAAATACCCTCGAAAGGT-
1 AAATGACTGAAATACCCTCGAAGGATAAAATGACTGAAATACCC-CGAAAGGTA
* * * *
14530755 AAAT-AATCGAAATACCCTCGGAGGATAAAATAATTGAAATACCCCGAAAGGTA
1 AAATGACT-GAAATACCCTCGAAGGATAAAATGACTGAAATACCCCGAAAGGTA
14530808 AAATGACTGAAATACCC
1 AAATGACTGAAATACCC
14530825 CTATAGGGTA
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
52 10 0.10
53 47 0.46
54 42 0.41
55 4 0.04
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.18
Consensus pattern (53 bp):
AAATGACTGAAATACCCTCGAAGGATAAAATGACTGAAATACCCCGAAAGGTA
Found at i:14530837 original size:53 final size:52
Alignment explanation
Indices: 14530657--14530852 Score: 180
Period size: 53 Copynumber: 3.7 Consensus size: 52
14530647 CAAATGACCA
* * * * *
14530657 AAATACCCTCAAAGGATAAAATGACTGAAATACCCCTAAAGGGTAAAATGATTG
1 AAATACCC-CTAAGGGTAAAATAACTGAAATACCCCGAAA-GGTAAAATGAATG
* * *
14530711 AAATACCCCCGAAGGGTAAAATGACAGAAATACCCTCGAAAGGT-AAAT-AATCG
1 AAATA-CCCCTAAGGGTAAAATAACTGAAATACCC-CGAAAGGTAAAATGAAT-G
** * * *
14530764 AAATACCCTCGGAGGATAAAATAATTGAAATACCCCGAAAGGTAAAATGACTG
1 AAATACCC-CTAAGGGTAAAATAACTGAAATACCCCGAAAGGTAAAATGAATG
**
14530817 AAATACCCCTATAGGGTAAAATAACTGTTATACCCC
1 AAATACCCCTA-AGGGTAAAATAACTGAAATACCCC
14530853 TAGAAGATGA
Statistics
Matches: 118, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
52 14 0.12
53 64 0.54
54 33 0.28
55 7 0.06
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.19
Consensus pattern (52 bp):
AAATACCCCTAAGGGTAAAATAACTGAAATACCCCGAAAGGTAAAATGAATG
Found at i:14530843 original size:27 final size:26
Alignment explanation
Indices: 14530648--14530854 Score: 157
Period size: 27 Copynumber: 7.8 Consensus size: 26
14530638 ATTCATGGGC
** * *
14530648 AAATGACCAAAATACCCTCAAAGGATA
1 AAATGACTGAAATACCC-CTAAGGGTA
14530675 AAATGACTGAAATACCCCTAAAGGGTA
1 AAATGACTGAAATACCCCT-AAGGGTA
* *
14530702 AAATGATTGAAATACCCCCGAAGGGTA
1 AAATGACTGAAATA-CCCCTAAGGGTA
* * *
14530729 AAATGACAGAAATACCCTCGAAAGGT-
1 AAATGACTGAAATACCC-CTAAGGGTA
* ** *
14530755 AAAT-AATCGAAATACCCTCGGAGGATA
1 AAATGACT-GAAATACCC-CTAAGGGTA
* * * *
14530782 AAATAATTGAAATACCCCGAAAGGTA
1 AAATGACTGAAATACCCCTAAGGGTA
14530808 AAATGACTGAAATACCCCTATAGGGTA
1 AAATGACTGAAATACCCCTA-AGGGTA
* **
14530835 AAATAACTGTTATACCCCTA
1 AAATGACTGAAATACCCCTA
14530855 GAAGATGAAA
Statistics
Matches: 148, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
25 1 0.01
26 46 0.31
27 95 0.64
28 6 0.04
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.19
Consensus pattern (26 bp):
AAATGACTGAAATACCCCTAAGGGTA
Found at i:14541332 original size:51 final size:51
Alignment explanation
Indices: 14541255--14541357 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
14541245 TAGTACCAAT
14541255 TGAGATTAAAAGTATTTGTGCCAAGCGAGACTTGATTATAAAATATTTTCA
1 TGAGATTAAAAGTATTTGTGCCAAGCGAGACTTGATTATAAAATATTTTCA
*
14541306 TGAGATTAAAAGTATTTGTGCTAAGCGAGACTTGATTATAAAATATTTTCA
1 TGAGATTAAAAGTATTTGTGCCAAGCGAGACTTGATTATAAAATATTTTCA
14541357 T
1 T
14541358 ACTCAAGTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (51 bp):
TGAGATTAAAAGTATTTGTGCCAAGCGAGACTTGATTATAAAATATTTTCA
Found at i:14547725 original size:20 final size:20
Alignment explanation
Indices: 14547700--14547740 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
14547690 AGGAAAACAT
14547700 ATATTAA-AATAAAAATAAAA
1 ATATTAATAA-AAAAATAAAA
*
14547720 ATATTAATAAAAAACTAAAA
1 ATATTAATAAAAAAATAAAA
14547740 A
1 A
14547741 AAATCATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (20 bp):
ATATTAATAAAAAAATAAAA
Found at i:14548081 original size:21 final size:20
Alignment explanation
Indices: 14548053--14548092 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
14548043 TTGTTATCTT
14548053 AAATTTAA-ACTAAATAATAA
1 AAATTTAAGA-TAAATAATAA
14548073 AAATGTTAAGATAAATAATA
1 AAAT-TTAAGATAAATAATA
14548093 TATTTTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 13 0.72
22 1 0.06
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (20 bp):
AAATTTAAGATAAATAATAA
Found at i:14548669 original size:18 final size:18
Alignment explanation
Indices: 14548632--14548666 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
14548622 TAATTAATAA
*
14548632 CTTATATTTTTATGATTT
1 CTTATATTTTTATAATTT
14548650 CTTAT-TTTTTATAATTT
1 CTTATATTTTTATAATTT
14548667 TCTAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.69
Consensus pattern (18 bp):
CTTATATTTTTATAATTT
Found at i:14549041 original size:20 final size:20
Alignment explanation
Indices: 14549018--14549064 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
14549008 AATAAACAGC
14549018 AAAAATTTATTTTAAAAATA
1 AAAAATTTATTTTAAAAATA
** *
14549038 AAAAAAATATTTTAAAATTA
1 AAAAATTTATTTTAAAAATA
14549058 AAAAATT
1 AAAAATT
14549065 AAAAAAAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAATTTATTTTAAAAATA
Found at i:14549083 original size:26 final size:25
Alignment explanation
Indices: 14549022--14549083 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 25
14549012 AACAGCAAAA
*
14549022 ATTTATTTTAAAAATAAAAAAAATAT
1 ATTTA-TTAAAAAATAAAAAAAATAT
14549048 -TTTAAAATTAAAAAATTAAAAAAAATAT
1 ATTT---ATTAAAAAA-TAAAAAAAATAT
14549076 ATTTATTA
1 ATTTATTA
14549084 TATTCGGGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
25 3 0.10
26 4 0.13
27 7 0.23
28 13 0.43
29 3 0.10
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
ATTTATTAAAAAATAAAAAAAATAT
Found at i:14549508 original size:19 final size:20
Alignment explanation
Indices: 14549471--14549507 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
14549461 TTATAGTATT
*
14549471 TATATATTTTTAAAATTTTC
1 TATATATTTCTAAAATTTTC
14549491 TATA-ATTTCT-AAATTTT
1 TATATATTTCTAAAATTTT
14549508 TATTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.44
19 5 0.31
20 4 0.25
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TATATATTTCTAAAATTTTC
Found at i:14550043 original size:34 final size:33
Alignment explanation
Indices: 14549938--14550052 Score: 131
Period size: 34 Copynumber: 3.4 Consensus size: 33
14549928 TTTAGAGTTT
* * *
14549938 TTTTTAAAAAATTAATTAAATTTGGTTTTAGGG
1 TTTTTAAAAAATTAATTAAATTAGGGTTTAGTG
* **
14549971 GTTTTAAATAAATTAATTAAATTAGGGTTTACAG
1 TTTTTAAA-AAATTAATTAAATTAGGGTTTAGTG
* *
14550005 TTTTTAAGAAAATTATTTAAATTAGGGTTTAGTT
1 TTTTTAA-AAAATTAATTAAATTAGGGTTTAGTG
14550039 TTTTTAAAATAATT
1 TTTTTAAAA-AATT
14550053 TTATGTTTAG
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
33 9 0.13
34 59 0.86
35 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (33 bp):
TTTTTAAAAAATTAATTAAATTAGGGTTTAGTG
Found at i:14550509 original size:125 final size:125
Alignment explanation
Indices: 14550136--14550658 Score: 744
Period size: 126 Copynumber: 4.2 Consensus size: 125
14550126 GGATTTTGTA
* * * * *
14550136 TTTTTTCTACAGTAGTTTCAGAAAAAATAATTTTGAGAAGACAATTCTGAAAAGATAATGTCAAA
1 TTTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGTCAAA
* *
14550201 AACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACAC
66 AACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACAC
* *
14550261 TCTTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAA
1 T-TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGTCAA
* * * * * * * *
14550326 AAACGCTTCAAGTAAGATGTATTGTCAACAAAATTATTGAAAAAAGCTCCCACGTGGACGC
65 AAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACAC
** *
14550387 TCTTTTTCTGTAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTG-AAAAATAGTGTCAA
1 T-TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGTCAA
* * *
14550451 AAATGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACATGGACGC
65 AAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACAC
* *
14550512 TTATTTTCTACAGTAGTTCCTAAAAAAATAA-TTTAACGAAGACAGTTCTGAAAAAATAGTGTCA
1 TT-TTTTCTACAGTAGTTCCTGAAAAAATAATTTTGA-GAAGACAGTTCTGAAAAAATAGTGTCA
* * *
14550576 AAAATGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTTGACAC
64 AAAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACAC
14550638 TTTTTTCTACAGTAGTTCCTG
1 TTTTTTCTACAGTAGTTCCTG
14550659 CTTGGCCTTA
Statistics
Matches: 361, Mismatches: 33, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
124 5 0.01
125 123 0.34
126 233 0.65
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (125 bp):
TTTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGTCAAA
AACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACAC
Found at i:14550587 original size:251 final size:251
Alignment explanation
Indices: 14550136--14550658 Score: 755
Period size: 251 Copynumber: 2.1 Consensus size: 251
14550126 GGATTTTGTA
* *
14550136 TTTTTTCTACAGTAGTTTCAGAAAAAATAATTTTGAGAAGACAATTCTGAAAAGATAATGTCAAA
1 TTTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAATTCTGAAAAGATAATGTCAAA
* * *
14550201 AACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACACTCTTT
66 AACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACATGGACACTCTTT
* * * *
14550266 TTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACG
131 TTCTACAGTAGTTCCTAAAAAAATAATTTTAAGAAGACAGTTCTGAAAAAATAGTGTCAAAAACG
* * * * * *
14550331 CTTCAAGTAAGATGTATTGTCAACAAAATTATTGAAAAAAGCTCCCACGTGGACGC
196 CTTCAAGCAAGATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACGTGGACAC
** ** *
14550387 TCTTTTTCTGTAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAA-ATAGTGTCAA
1 T-TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAATTCTGAAAAGATAATGTCAA
* *
14550451 AAATGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACATGGACGCT-TA
65 AAACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACATGGACACTCT-
14550515 TTTTCTACAGTAGTTCCTAAAAAAATAA-TTTAACGAAGACAGTTCTGAAAAAATAGTGTCAAAA
129 TTTTCTACAGTAGTTCCTAAAAAAATAATTTTAA-GAAGACAGTTCTGAAAAAATAGTGTCAAAA
* * * * *
14550579 ATGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTTGACAC
193 ACGCTTCAAGCAAGATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACGTGGACAC
14550638 TTTTTTCTACAGTAGTTCCTG
1 TTTTTTCTACAGTAGTTCCTG
14550659 CTTGGCCTTA
Statistics
Matches: 240, Mismatches: 29, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
250 23 0.10
251 171 0.71
252 46 0.19
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (251 bp):
TTTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAATTCTGAAAAGATAATGTCAAA
AACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACATGGACACTCTTT
TTCTACAGTAGTTCCTAAAAAAATAATTTTAAGAAGACAGTTCTGAAAAAATAGTGTCAAAAACG
CTTCAAGCAAGATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACGTGGACAC
Found at i:14553009 original size:13 final size:13
Alignment explanation
Indices: 14552991--14553023 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
14552981 TTCTTTATTA
14552991 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
14553004 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
14553017 CTTTTGA
1 CTTTTGA
14553024 AGAATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.42
Consensus pattern (13 bp):
CTTTTGAGAAGTG
Found at i:14555159 original size:72 final size:72
Alignment explanation
Indices: 14555038--14555208 Score: 240
Period size: 72 Copynumber: 2.4 Consensus size: 72
14555028 AAAATAATAT
* ** *
14555038 ATAAACAACTATTGATAAAACTA-ATTTAGTATAAATAAGTAGAACATAAATTCAATATCCAAAG
1 ATAAACAACTATTAATAAAACTAGATTTAACATAAATAAGTAGAACATAAATTCAATATCCAAAA
14555102 ACCAAAC
66 ACCAAAC
* *
14555109 ATAAGCAACTATTAATAAAACTAGA-TTACACATAAATAAGTAGAATATAAATTCAATATCCAAA
1 ATAAACAACTATTAATAAAACTAGATTTA-ACATAAATAAGTAGAACATAAATTCAATATCCAAA
14555173 AACCAAAC
65 AACCAAAC
* *
14555181 ATAAATAACTATTAACAAAACTAG-TTTA
1 ATAAACAACTATTAATAAAACTAGATTTA
14555209 GCATTGTTGT
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
71 24 0.27
72 64 0.73
ACGTcount: A:0.54, C:0.14, G:0.06, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTAATAAAACTAGATTTAACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:14555654 original size:18 final size:18
Alignment explanation
Indices: 14555633--14555698 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
14555623 CCCATCAATT
14555633 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
14555651 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
* *
14555669 TGAACATAATTTAAAATG
1 TGAACATCATTTGAAATG
14555687 TGAACATCATTT
1 TGAACATCATTT
14555699 CTTATATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:14566860 original size:51 final size:51
Alignment explanation
Indices: 14566800--14566983 Score: 216
Period size: 51 Copynumber: 3.6 Consensus size: 51
14566790 GATGAACACG
* *
14566800 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGTCACT
** * *
14566851 TGTGTAGTACTAAATGAAGGCTACTATGTGTACCGA-AAAGCT-TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA--TATTGGTCACT
* **
14566902 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTAATCA-T
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATA-TTGGTCACT
14566951 GTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 -TGTGTAGTACTATGTGAAGGCTACTACGTGTA
14566984 TCGAATGATA
Statistics
Matches: 113, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
50 39 0.35
51 73 0.65
52 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGTCACT
Found at i:14566881 original size:26 final size:26
Alignment explanation
Indices: 14566800--14566882 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
14566790 GATGAACACG
**
14566800 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTAAATGAAGGCTACTA
*
14566826 CGTGTA-T-CGATAAAT-AATGG-TCACT-
1 TGTGTAGTAC--TAAATGAA-GGCT-ACTA
14566851 TGTGTAGTACTAAATGAAGGCTACTA
1 TGTGTAGTACTAAATGAAGGCTACTA
14566877 TGTGTA
1 TGTGTA
14566883 CCGAAAAGCT
Statistics
Matches: 44, Mismatches: 4, Indels: 18
0.67 0.06 0.27
Matches are distributed among these distances:
24 1 0.02
25 19 0.43
26 23 0.52
27 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (26 bp):
TGTGTAGTACTAAATGAAGGCTACTA
Found at i:14571010 original size:55 final size:59
Alignment explanation
Indices: 14570899--14571009 Score: 140
Period size: 58 Copynumber: 1.9 Consensus size: 59
14570889 GAACTTCTAA
*
14570899 TTTATTAAATAGAACAAAATATAAAAATAATTTACTATTAAAATATTCAAAAAAAATTAT
1 TTTATTAAATAGAACAAAATATAAAAATAATTTACTATCAAAATATT-AAAAAAAATTAT
* * *
14570959 TTTATTAAAT-GAA-ACAATATAAAAATAGTTT-GTA-CAAATATATTAAAAAAA
1 TTTATTAAATAGAACAAAATATAAAAATAATTTACTATCAAA-ATATTAAAAAAA
14571010 TCAATGTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
56 10 0.22
57 7 0.15
58 16 0.35
59 3 0.07
60 10 0.22
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.34
Consensus pattern (59 bp):
TTTATTAAATAGAACAAAATATAAAAATAATTTACTATCAAAATATTAAAAAAAATTAT
Found at i:14601716 original size:22 final size:20
Alignment explanation
Indices: 14601677--14601728 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
14601667 TGCAAAGTTG
14601677 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
14601696 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
*
14601719 ATAATTATTA
1 ATAATAATTA
14601729 TCTTATTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 6 0.21
20 2 0.07
21 5 0.18
22 10 0.36
23 5 0.18
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:14608304 original size:25 final size:25
Alignment explanation
Indices: 14608250--14608333 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 25
14608240 GGTTACTGAT
* * **
14608250 TTCAGCTCGTATGAGCTTACCAATA
1 TTCAGCTCGCATAAGCTTACCGTTA
*
14608275 TTCAGCTCGCATTAGCTTACCGTTA
1 TTCAGCTCGCATAAGCTTACCGTTA
* * * *
14608300 ATCAGCTCGGAGAAGGTTACCGTTA
1 TTCAGCTCGCATAAGCTTACCGTTA
14608325 TTCAGCTCG
1 TTCAGCTCG
14608334 GAAGAGCTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (25 bp):
TTCAGCTCGCATAAGCTTACCGTTA
Found at i:14608334 original size:25 final size:25
Alignment explanation
Indices: 14608250--14608348 Score: 85
Period size: 25 Copynumber: 4.0 Consensus size: 25
14608240 GGTTACTGAT
* **
14608250 TTCAGCTCGTATG-AGCTTACCAATA
1 TTCAGCTCGGA-GAAGCTTACCGTTA
* **
14608275 TTCAGCTCGCATTAGCTTACCGTTA
1 TTCAGCTCGGAGAAGCTTACCGTTA
* *
14608300 ATCAGCTCGGAGAAGGTTACCGTTA
1 TTCAGCTCGGAGAAGCTTACCGTTA
*
14608325 TTCAGCTCGGA-AGAGCTTATCGTT
1 TTCAGCTCGGAGA-AGCTTACCGTT
14608349 TACTGCTCGT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
24 1 0.02
25 59 0.98
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
TTCAGCTCGGAGAAGCTTACCGTTA
Found at i:14611089 original size:31 final size:31
Alignment explanation
Indices: 14611052--14611114 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
14611042 AATCTCACAT
14611052 TTTGTACTATTTATATTATTGAATTTTTTTA
1 TTTGTACTATTTATATTATTGAATTTTTTTA
14611083 TTTGTACTATTTATATTATTGAATTTTTTTA
1 TTTGTACTATTTATATTATTGAATTTTTTTA
14611114 T
1 T
14611115 CATATTGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.65
Consensus pattern (31 bp):
TTTGTACTATTTATATTATTGAATTTTTTTA
Found at i:14613826 original size:22 final size:24
Alignment explanation
Indices: 14613784--14613828 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14613774 TCACTTATCT
14613784 TTTCTTCCACTACATTCTCCAATA
1 TTTCTTCCACTACATTCTCCAATA
*
14613808 TTTCTTCCAGT-C-TTCTCCAAT
1 TTTCTTCCACTACATTCTCCAAT
14613829 GGCTTGGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 1 0.05
24 10 0.50
ACGTcount: A:0.20, C:0.33, G:0.02, T:0.44
Consensus pattern (24 bp):
TTTCTTCCACTACATTCTCCAATA
Found at i:14614992 original size:24 final size:24
Alignment explanation
Indices: 14614965--14615010 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14614955 CTGATGCTGT
14614965 TGAGGAGCAC-ACTCAAAATGCTAC
1 TGAGGAGC-CTACTCAAAATGCTAC
*
14614989 TGAGGAGCCTACTCAACATGCT
1 TGAGGAGCCTACTCAAAATGCT
14615011 GCTAAAGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.20
Consensus pattern (24 bp):
TGAGGAGCCTACTCAAAATGCTAC
Found at i:14615020 original size:24 final size:24
Alignment explanation
Indices: 14614975--14615021 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
14614965 TGAGGAGCAC
* *
14614975 ACTCAAAATGCTACTGAGGAGCCT
1 ACTCAAAATGCTACTAAAGAGCCT
* *
14614999 ACTCAACATGCTGCTAAAGAGCC
1 ACTCAAAATGCTACTAAAGAGCC
14615022 CGAAAAGGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (24 bp):
ACTCAAAATGCTACTAAAGAGCCT
Found at i:14618925 original size:28 final size:30
Alignment explanation
Indices: 14618886--14618955 Score: 108
Period size: 28 Copynumber: 2.4 Consensus size: 30
14618876 CTATCGAATT
*
14618886 ATGAAAAGGGATGGTGACGA-CATC-AACA
1 ATGAAAAGGGATGATGACGACCATCGAACA
*
14618914 ATGAAAAAGGATGATGACGACCATCGAACA
1 ATGAAAAGGGATGATGACGACCATCGAACA
14618944 ATGAAAAGGGAT
1 ATGAAAAGGGAT
14618956 AGCTTCGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 18 0.49
29 4 0.11
30 15 0.41
ACGTcount: A:0.46, C:0.13, G:0.27, T:0.14
Consensus pattern (30 bp):
ATGAAAAGGGATGATGACGACCATCGAACA
Found at i:14619007 original size:70 final size:69
Alignment explanation
Indices: 14618893--14619033 Score: 194
Period size: 70 Copynumber: 2.0 Consensus size: 69
14618883 ATTATGAAAA
* * *
14618893 GGGATGGTGACGACATCAACAATGAAAAAGGATGATGACGACCATCGAACAATGAAAAGGGATAG
1 GGGATGGTGACGACATCAACAATGAAAAAGGATGATGACAACCATCAAACAATGAAAAAGGATAG
14618958 CTTC
66 CTTC
* * * *
14618962 GGGATGGTGATGACCATCAATAATGAAAAGGGAT-AGTGACAACCATCAAATAATGAAAAAGGAT
1 GGGATGGTGACGA-CATCAACAATGAAAAAGGATGA-TGACAACCATCAAACAATGAAAAAGGAT
14619026 AGCTTC
64 AGCTTC
14619032 GG
1 GG
14619034 CTATTGAGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
69 13 0.21
70 50 0.79
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (69 bp):
GGGATGGTGACGACATCAACAATGAAAAAGGATGATGACAACCATCAAACAATGAAAAAGGATAG
CTTC
Found at i:14619048 original size:30 final size:30
Alignment explanation
Indices: 14619014--14619080 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
14619004 CCATCAAATA
*
14619014 ATGAAAAAGGATAGCTTCGGCTATTGAGCT
1 ATGAAAAAGGATAGCTTCGGCTATCGAGCT
* * *
14619044 ATGAATAGGGATAGCTTTGGCTATCGAGCT
1 ATGAAAAAGGATAGCTTCGGCTATCGAGCT
14619074 ATGAAAA
1 ATGAAAA
14619081 GGGTTGGGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (30 bp):
ATGAAAAAGGATAGCTTCGGCTATCGAGCT
Found at i:14633637 original size:29 final size:29
Alignment explanation
Indices: 14633603--14633701 Score: 135
Period size: 29 Copynumber: 3.4 Consensus size: 29
14633593 GATGGTCGTC
**
14633603 ACCATCCCTTTTCATATTTGATGGTCAAA
1 ACCATCCCTTTTCATATTCAATGGTCAAA
* *
14633632 ATCATCCCTTTTCATATTCAATGGTCGAA
1 ACCATCCCTTTTCATATTCAATGGTCAAA
* *
14633661 GCCATCCCTTTTCATATTCAATGGTCAAC
1 ACCATCCCTTTTCATATTCAATGGTCAAA
14633690 ACCATCCTCTTT
1 ACCATCC-CTTT
14633702 CTTTAATCGA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
29 56 0.93
30 4 0.07
ACGTcount: A:0.25, C:0.28, G:0.09, T:0.37
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCAATGGTCAAA
Found at i:14639036 original size:51 final size:51
Alignment explanation
Indices: 14638863--14639195 Score: 338
Period size: 51 Copynumber: 6.6 Consensus size: 51
14638853 TTCGATACAT
* *
14638863 GTAGTAGCCTTCACATAGTACTACACACGTGATCAAG-GTTTACGGTTCAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTTTACGGTTCAC
* *
14638913 GTAGTAGCCTTCATATAGTACTACACACGTGATCAAG-TTTTACGGTTCAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTTTACGGTTCAC
* * * *
14638963 GTAGTAGCCTTCACAGAATACTACACACGTGACCAAAGCTTTTA-AGTACAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTTTTACGGTTCAC
* * * * * * *
14639014 ATAGTACCCTTCACTTAGTACTACACATGTGACC-ATCATTTATCGATTCAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTTTA-CGGTTCAC
* * * *
14639065 GTAGTAGCCTTCACACAGTACTACACATGTGACCAAAGCTTCT-CGGTACAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTTTTACGGTTCAC
* * * * * * * *
14639116 ATTGTAGCCTTCACTTAGTACTACACATGTGACC-ATCATAT-CGATTCAC
1 GTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTTTACGGTTCAC
*
14639165 GTAGTAGCCTTCACACAGTACTACACACGTG
1 GTAGTAGCCTTCACATAGTACTACACACGTG
14639196 TTCATCGATA
Statistics
Matches: 235, Mismatches: 42, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
49 42 0.18
50 78 0.33
51 106 0.45
52 5 0.02
53 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (51 bp):
GTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTTTACGGTTCAC
Found at i:14639087 original size:102 final size:102
Alignment explanation
Indices: 14638854--14639195 Score: 435
Period size: 102 Copynumber: 3.4 Consensus size: 102
14638844 CTTTTATCAT
* * * * * * *
14638854 TCGATACATGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-GTTTACGGTTCACGTAG
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTA-GGTACACATAG
* * ***
14638917 TAGCCTTCA-TATAGTACTACACACGTGATCAAGTTTTA
65 TAGCCTTCACT-TAGTACTACACATGTGACCATCATTTA
* * * *
14638955 -CGGTTCACGTAGTAGCCTTCACAGAATACTACACACGTGACCAAAGCTTTTAAGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTAGGTACACATAGT
*
14639019 ACCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
14639056 TCGATTCACGTAGTAGCCTTCACACAGTACTACACATGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTAGGTACACATAGT
14639121 AGCCTTCACTTAGTACTACACATGTGACCATCA--TA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
14639156 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
14639196 TTCATCGATA
Statistics
Matches: 211, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
100 77 0.36
101 41 0.19
102 93 0.44
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTAGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:14642294 original size:42 final size:42
Alignment explanation
Indices: 14642211--14642295 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
14642201 CTTTGTTTTC
* **
14642211 TCAATGCCATAGTCCAACTATGGTCTTACACATATTTACATA
1 TCAATGCCATAGCCCAACTATGGTCTTACACATATGCACATA
*
14642253 TCAATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATA
1 TCAATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATA
14642295 T
1 T
14642296 TACACTGATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 36 0.95
43 2 0.05
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (42 bp):
TCAATGCCATAGCCCAACTATGGTCTTACACATATGCACATA
Found at i:14649088 original size:24 final size:24
Alignment explanation
Indices: 14649060--14649111 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
14649050 TTAGTAAGTC
* *
14649060 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
* *
14649084 AAATATATTATACTAATACATACT
1 AAATAAATTATACTAATAAATACT
14649108 AAAT
1 AAAT
14649112 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:14650788 original size:28 final size:27
Alignment explanation
Indices: 14650731--14650882 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
14650721 TAAATTGTGC
*
14650731 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
14650758 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
14650786 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
14650813 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
14650841 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
14650868 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14650883 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:14650797 original size:55 final size:55
Alignment explanation
Indices: 14650731--14650882 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
14650721 TAAATTGTGC
*
14650731 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
14650786 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
14650841 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
14650883 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:14666259 original size:50 final size:50
Alignment explanation
Indices: 14666135--14666478 Score: 449
Period size: 50 Copynumber: 6.9 Consensus size: 50
14666125 GATAATAACA
* * * ** * * *
14666135 TGCCAAAGCCATGTCCTAGACATGATCTTACATGGGATGTTTCCTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * ** *
14666184 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *** *
14666234 TGCCCATGCCATGTCTCAGACATGGTCTTATGGGGGACCTCGCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14666284 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
14666334 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
14666384 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
14666434 TGCCAACGCTATGTCCTAGACATGGTCTTACATGGGACCTCTCAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
14666479 AATTTAAATA
Statistics
Matches: 261, Mismatches: 32, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
48 1 0.00
49 37 0.14
50 223 0.85
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14666996 original size:8 final size:8
Alignment explanation
Indices: 14666983--14667010 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
14666973 TTTTGTTTTA
14666983 TTCTACAT
1 TTCTACAT
14666991 TTCTACAT
1 TTCTACAT
14666999 TTCTACAT
1 TTCTACAT
14667007 TTCT
1 TTCT
14667011 CAACTCATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.25, G:0.00, T:0.54
Consensus pattern (8 bp):
TTCTACAT
Found at i:14674536 original size:18 final size:17
Alignment explanation
Indices: 14674513--14674546 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14674503 CAAGAAGTAG
14674513 TTTTCTAGTTGATCTAAA
1 TTTTCTAGTTGA-CTAAA
*
14674531 TTTTCTTGTTGACTAA
1 TTTTCTAGTTGACTAA
14674547 GAAATATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTTTCTAGTTGACTAAA
Found at i:14676851 original size:15 final size:15
Alignment explanation
Indices: 14676831--14676861 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14676821 GTACAGTGCA
*
14676831 TTTATTTATACTAAG
1 TTTATTTACACTAAG
14676846 TTTATTTACACTAAG
1 TTTATTTACACTAAG
14676861 T
1 T
14676862 GTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (15 bp):
TTTATTTACACTAAG
Found at i:14678846 original size:14 final size:15
Alignment explanation
Indices: 14678821--14678854 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
14678811 ACCATTTCAT
14678821 TATTTATGTTGTTAC
1 TATTTATGTTGTTAC
*
14678836 TATTT-TGTTGTTAT
1 TATTTATGTTGTTAC
14678850 TATTT
1 TATTT
14678855 GGATATAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.18, C:0.03, G:0.12, T:0.68
Consensus pattern (15 bp):
TATTTATGTTGTTAC
Found at i:14683916 original size:37 final size:37
Alignment explanation
Indices: 14683839--14683917 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
14683829 TTATTACGAA
* * *
14683839 GTCTTACCCGAACATAATCTCCACACGAAGTTAACGG
1 GTCTTACCCGAACAAAATCTCCACACGAAGTCAACAG
* *
14683876 GTCTTACCCGGACAAAATCTCCACACGTAA-TCATCAG
1 GTCTTACCCGAACAAAATCTCCACACG-AAGTCAACAG
14683913 GTCTT
1 GTCTT
14683918 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCTCCACACGAAGTCAACAG
Found at i:14684110 original size:49 final size:49
Alignment explanation
Indices: 14684038--14684388 Score: 584
Period size: 49 Copynumber: 7.2 Consensus size: 49
14684028 CTTCAGGACT
* * * * *
14684038 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
14684085 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
14684134 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
14684181 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
14684230 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
14684279 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
14684328 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
14684377 TATCACATATAT
1 TATCACATATAT
14684389 CGGCCATTAG
Statistics
Matches: 287, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 53 0.18
48 1 0.00
49 233 0.81
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:14684397 original size:26 final size:26
Alignment explanation
Indices: 14684361--14684414 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
14684351 CATTCATCAC
14684361 ATCGGCCATTAGGCCCTATCACATAT
1 ATCGGCCATTAGGCCCTATCACATAT
14684387 ATCGGCCATTAGGCCCTATCACATAT
1 ATCGGCCATTAGGCCCTATCACATAT
14684413 AT
1 AT
14684415 ATACACTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (26 bp):
ATCGGCCATTAGGCCCTATCACATAT
Found at i:14684403 original size:75 final size:75
Alignment explanation
Indices: 14684315--14684463 Score: 289
Period size: 75 Copynumber: 2.0 Consensus size: 75
14684305 TCATCACATT
14684315 GGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
1 GGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
14684380 CACATATATC
66 CACATATATC
*
14684390 GGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 GGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
14684455 CACATATAT
66 CACATATAT
14684464 ACACTTTCAC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (75 bp):
GGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
CACATATATC
Found at i:14684442 original size:49 final size:49
Alignment explanation
Indices: 14684387--14684552 Score: 309
Period size: 49 Copynumber: 3.4 Consensus size: 49
14684377 TATCACATAT
*
14684387 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCAC
1 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
14684436 ATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
1 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
14684483 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
1 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
14684532 ATCGGCCATTAGGCCTTATCA
1 ATCGGCCATTAGGCCTTATCA
14684553 TCATTTCATA
Statistics
Matches: 114, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
47 47 0.41
49 67 0.59
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.31
Consensus pattern (49 bp):
ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
Found at i:14684512 original size:124 final size:123
Alignment explanation
Indices: 14684263--14684510 Score: 453
Period size: 124 Copynumber: 2.0 Consensus size: 123
14684253 CATTCATCAC
*
14684263 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCC
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
14684328 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATAT
66 TATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATAT
*
14684387 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
14684452 TATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
66 TATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATAT
14684509 AT
1 AT
14684511 ATACACTTTC
Statistics
Matches: 121, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
122 52 0.43
124 69 0.57
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (123 bp):
ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
TATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATAT
Found at i:14684523 original size:171 final size:172
Alignment explanation
Indices: 14684214--14684552 Score: 626
Period size: 171 Copynumber: 2.0 Consensus size: 172
14684204 CATTCATCAC
14684214 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
14684279 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATAC
66 TATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
14684344 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATAT
130 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATAT
*
14684387 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
14684452 TATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
66 TATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACA
*
14684516 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 CTTTCACATTCATCACATCGGCCATTAGGCCCTATCA
14684553 TCATTTCATA
Statistics
Matches: 162, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
171 92 0.57
173 70 0.43
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (172 bp):
ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
TATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATAT
Found at i:14687668 original size:260 final size:260
Alignment explanation
Indices: 14687207--14687729 Score: 1028
Period size: 260 Copynumber: 2.0 Consensus size: 260
14687197 GTGGTATTAG
14687207 TTACATGTTGAATAGTGTATGTTTAGAATGGATTATATGCCTTACTATGCTATATTTTTGTTGTT
1 TTACATGTTGAATAGTGTATGTTTAGAATGGATTATATGCCTTACTATGCTATATTTTTGTTGTT
*
14687272 TGGAATAGAGGTATTGATATACAGATTTTAAAAATGATACCTCCATGATACTTTGATATGTAGGG
66 TGGAACAGAGGTATTGATATACAGATTTTAAAAATGATACCTCCATGATACTTTGATATGTAGGG
14687337 AGTTAGTAACGTAAGTTGGTATCGATATCATATCACGAGTATCGATACTTGAGGTAAAATAATTG
131 AGTTAGTAACGTAAGTTGGTATCGATATCATATCACGAGTATCGATACTTGAGGTAAAATAATTG
*
14687402 ATACTTTATGAAGGTACTAATAATTTCTGAGATTTTAATTTTTAGGCGAGAAACAAAATGTTGTT
196 ATACTTTATGAAGGTACTAATAATTTCTCAGATTTTAATTTTTAGGCGAGAAACAAAATGTTGTT
14687467 TTACATGTTGAATAGTGTATGTTTAGAATGGATTATATGCCTTACTATGCTATATTTTTGTTGTT
1 TTACATGTTGAATAGTGTATGTTTAGAATGGATTATATGCCTTACTATGCTATATTTTTGTTGTT
14687532 TGGAACAGAGGTATTGATATACAGATTTTAAAAATGATACCTCCATGATACTTTGATATGTAGGG
66 TGGAACAGAGGTATTGATATACAGATTTTAAAAATGATACCTCCATGATACTTTGATATGTAGGG
14687597 AGTTAGTAACGTAAGTTGGTATCGATATCATATCACGAGTATCGATACTTGAGGTAAAATAATTG
131 AGTTAGTAACGTAAGTTGGTATCGATATCATATCACGAGTATCGATACTTGAGGTAAAATAATTG
14687662 ATACTTTATGAAGGTACTAATAATTTCTCAGATTTTAATTTTTAGGCGAGAAACAAAATGTTGTT
196 ATACTTTATGAAGGTACTAATAATTTCTCAGATTTTAATTTTTAGGCGAGAAACAAAATGTTGTT
14687727 TTA
1 TTA
14687730 GTATGGATTT
Statistics
Matches: 261, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
260 261 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (260 bp):
TTACATGTTGAATAGTGTATGTTTAGAATGGATTATATGCCTTACTATGCTATATTTTTGTTGTT
TGGAACAGAGGTATTGATATACAGATTTTAAAAATGATACCTCCATGATACTTTGATATGTAGGG
AGTTAGTAACGTAAGTTGGTATCGATATCATATCACGAGTATCGATACTTGAGGTAAAATAATTG
ATACTTTATGAAGGTACTAATAATTTCTCAGATTTTAATTTTTAGGCGAGAAACAAAATGTTGTT
Found at i:14687832 original size:32 final size:32
Alignment explanation
Indices: 14687791--14687858 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
14687781 TTTGATTCAA
14687791 TATCCATACCTACGTGAATAATTTAGAATTTC
1 TATCCATACCTACGTGAATAATTTAGAATTTC
14687823 TATCCATACCTACGTGAATAATTTAGAATTTC
1 TATCCATACCTACGTGAATAATTTAGAATTTC
14687855 TATC
1 TATC
14687859 TAGTGGTCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (32 bp):
TATCCATACCTACGTGAATAATTTAGAATTTC
Found at i:14700951 original size:21 final size:21
Alignment explanation
Indices: 14700927--14700966 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14700917 TTCCATTTCA
14700927 TTTTCTTACACATTTCATTCC
1 TTTTCTTACACATTTCATTCC
* *
14700948 TTTTCTTACCCGTTTCATT
1 TTTTCTTACACATTTCATT
14700967 TGCATGGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.28, G:0.03, T:0.55
Consensus pattern (21 bp):
TTTTCTTACACATTTCATTCC
Found at i:14703771 original size:20 final size:20
Alignment explanation
Indices: 14703727--14703772 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
14703717 CTCGGTTCGA
* * *
14703727 CCAATTTTGGGGTCTTGGTC
1 CCAATTTTGGGCTCTCGGGC
*
14703747 TCAATTTTGGGCTCTCGGGC
1 CCAATTTTGGGCTCTCGGGC
14703767 CCAATT
1 CCAATT
14703773 ATGATCTCAG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.24, G:0.26, T:0.37
Consensus pattern (20 bp):
CCAATTTTGGGCTCTCGGGC
Found at i:14708568 original size:27 final size:27
Alignment explanation
Indices: 14707984--14708554 Score: 660
Period size: 27 Copynumber: 21.1 Consensus size: 27
14707974 AGTGGTCGAT
* *
14707984 AAATGATCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
** *
14708011 AAATGACCGAAATACCCCTGTAGCGTA
1 AAATGACCGAAATACCCCCATAGGGTA
** **
14708038 AAATGACTAAAATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
14708065 AAATGACCGAAATA-CCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
14708091 AAATGACC-AAGATACCCCAATAGGGAA
1 AAATGACCGAA-ATACCCCCATAGGGTA
* * *
14708118 AAATGACCGAAATAGCCCCAGAGAGTA
1 AAATGACCGAAATACCCCCATAGGGTA
** *
14708145 AAATGACCGAAATACTGCCATAGGATA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
14708172 AAAAGACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
14708199 AAATAACCAAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
14708226 AAATGATCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
14708253 GAATGACCGAAATACCCCCATAGGGTT
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
14708280 AAATGATCGAAATATCCCTCATAAGGTA
1 AAATGACCGAAATA-CCCCCATAGGGTA
**
14708308 AAATGACCGAAATACCCTAATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
14708335 GAATGATCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
**
14708362 AAATGACTAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
14708389 GAATGACCAAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
14708416 AAATGACCGAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* **
14708443 AAATGACCGAAAGACCCCCATATAGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
14708470 AAGTAACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
14708497 GAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
14708524 AAATAATCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
14708551 AAAT
1 AAAT
14708555 AACTGTTATA
Statistics
Matches: 457, Mismatches: 83, Indels: 8
0.83 0.15 0.01
Matches are distributed among these distances:
25 2 0.00
26 20 0.04
27 410 0.90
28 25 0.05
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.18
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:14711396 original size:19 final size:19
Alignment explanation
Indices: 14711374--14711410 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14711364 CCCTTTCATC
14711374 TTCTT-AAACCTCTCTAAAT
1 TTCTTAAAACCTCT-TAAAT
14711393 TTCTTAAAACCTCTTAAA
1 TTCTTAAAACCTCTTAAA
14711411 CCTTAAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (19 bp):
TTCTTAAAACCTCTTAAAT
Found at i:14712717 original size:12 final size:12
Alignment explanation
Indices: 14712702--14712731 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14712692 ATTAGGAGAT
14712702 GGATAAGGATGA
1 GGATAAGGATGA
14712714 GGATAAGGATGA
1 GGATAAGGATGA
*
14712726 GTATAA
1 GGATAA
14712732 CTTAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.37, T:0.20
Consensus pattern (12 bp):
GGATAAGGATGA
Found at i:14730411 original size:16 final size:17
Alignment explanation
Indices: 14730390--14730422 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14730380 TTGTTTTGTT
14730390 ATATGTTCTG-TATATG
1 ATATGTTCTGATATATG
*
14730406 ATATGTTTTGATATATG
1 ATATGTTCTGATATATG
14730423 CTAGAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.27, C:0.03, G:0.18, T:0.52
Consensus pattern (17 bp):
ATATGTTCTGATATATG
Found at i:14752954 original size:31 final size:31
Alignment explanation
Indices: 14752891--14752954 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
14752881 TTTTTCAGAA
* *
14752891 TTTGAGCAAACTTTCCTTTGCTCTTTATTCT
1 TTTGAACAAACTTTCCTTTGCTCTTTAATCT
* *
14752922 TTTGAACAAACTTTCCTTTGTTTTTTAATCT
1 TTTGAACAAACTTTCCTTTGCTCTTTAATCT
14752953 TT
1 TT
14752955 CTTTTTTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.19, C:0.19, G:0.08, T:0.55
Consensus pattern (31 bp):
TTTGAACAAACTTTCCTTTGCTCTTTAATCT
Found at i:14755281 original size:17 final size:17
Alignment explanation
Indices: 14755255--14755292 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
14755245 TGGTTGTAAG
*
14755255 CTTGCCACAATAATGGA
1 CTTGCCACAATAATAGA
*
14755272 CTTGCGACAATAATAGA
1 CTTGCCACAATAATAGA
14755289 CTTG
1 CTTG
14755293 TGGCGGTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (17 bp):
CTTGCCACAATAATAGA
Found at i:14773686 original size:23 final size:23
Alignment explanation
Indices: 14773655--14773702 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
14773645 CATGTATATA
14773655 TATAAATATTATTATCAAGTCAT
1 TATAAATATTATTATCAAGTCAT
*
14773678 TATATATATTATTATCAAGTCAT
1 TATAAATATTATTATCAAGTCAT
14773701 TA
1 TA
14773703 AACTTATCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (23 bp):
TATAAATATTATTATCAAGTCAT
Found at i:14776337 original size:18 final size:17
Alignment explanation
Indices: 14776316--14776350 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
14776306 TCGGCTAGCA
14776316 TGAGAAATTGTGAAATTT
1 TGAGAAATT-TGAAATTT
14776334 TGAGAAATTTGAAATTT
1 TGAGAAATTTGAAATTT
14776351 CGGGTTTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (17 bp):
TGAGAAATTTGAAATTT
Found at i:14783338 original size:37 final size:37
Alignment explanation
Indices: 14783276--14783416 Score: 153
Period size: 37 Copynumber: 3.8 Consensus size: 37
14783266 AATACAAAAT
*
14783276 AGTGGCATG-TATTAACATGCGATCAATAATTCAATAAC
1 AGTGGCATGCT-TT-ACATGCAATCAATAATTCAATAAC
* * * *
14783314 AGTGGCATGCTTTACATGTAATCAATAAAT-ACAGAAT
1 AGTGGCATGCTTTACATGCAATCAATAATTCA-ATAAC
* *
14783351 AGTGGCATG-TATTAACATGCGATCAGTAATTCAATAAC
1 AGTGGCATGCT-TT-ACATGCAATCAATAATTCAATAAC
14783389 AGTGGCATGCTTTACATGCAATCAATAA
1 AGTGGCATGCTTTACATGCAATCAATAA
14783417 ATACAAAATA
Statistics
Matches: 84, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
36 2 0.02
37 41 0.49
38 38 0.45
39 3 0.04
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (37 bp):
AGTGGCATGCTTTACATGCAATCAATAATTCAATAAC
Found at i:14783389 original size:75 final size:75
Alignment explanation
Indices: 14783266--14783428 Score: 299
Period size: 75 Copynumber: 2.2 Consensus size: 75
14783256 AGTTACGTAC
14783266 AATACAAAATAGTGGCATGTATTAACATGCGATCAATAATTCAATAACAGTGGCATGCTTTACAT
1 AATACAAAATAGTGGCATGTATTAACATGCGATCAATAATTCAATAACAGTGGCATGCTTTACAT
*
14783331 GTAATCAATA
66 GCAATCAATA
* *
14783341 AATACAGAATAGTGGCATGTATTAACATGCGATCAGTAATTCAATAACAGTGGCATGCTTTACAT
1 AATACAAAATAGTGGCATGTATTAACATGCGATCAATAATTCAATAACAGTGGCATGCTTTACAT
14783406 GCAATCAATA
66 GCAATCAATA
14783416 AATACAAAATAGT
1 AATACAAAATAGT
14783429 AAACATGTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 84 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (75 bp):
AATACAAAATAGTGGCATGTATTAACATGCGATCAATAATTCAATAACAGTGGCATGCTTTACAT
GCAATCAATA
Found at i:14784378 original size:14 final size:15
Alignment explanation
Indices: 14784343--14784384 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
14784333 TAGAGAGGAA
14784343 GAAAAGAGAGAAAACGG
1 GAAAA-AGAGAAAAC-G
14784360 GAAAAAGAGAAAA-G
1 GAAAAAGAGAAAACG
*
14784374 GAAAAGGAGAA
1 GAAAAAGAGAA
14784385 GGGTGGCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 11 0.46
16 8 0.33
17 5 0.21
ACGTcount: A:0.64, C:0.02, G:0.33, T:0.00
Consensus pattern (15 bp):
GAAAAAGAGAAAACG
Found at i:14786240 original size:20 final size:20
Alignment explanation
Indices: 14786217--14786280 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
14786207 TTACACAATT
* *
14786217 GTGCATCTGTTTGCACTTCA
1 GTGCACCTGATTGCACTTCA
* *
14786237 GTGCGCCTGATTGCACTTCG
1 GTGCACCTGATTGCACTTCA
* * *
14786257 GTGCCCCTGATAGCACTACA
1 GTGCACCTGATTGCACTTCA
14786277 GTGC
1 GTGC
14786281 TCCCTAGTGT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.16, C:0.30, G:0.25, T:0.30
Consensus pattern (20 bp):
GTGCACCTGATTGCACTTCA
Found at i:14788166 original size:14 final size:14
Alignment explanation
Indices: 14788143--14788177 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14788133 CGCCTCCCTT
*
14788143 GAGTACTATCCTCG
1 GAGTACTATCCTCA
*
14788157 GAGTATTATCCTCA
1 GAGTACTATCCTCA
14788171 GAGTACT
1 GAGTACT
14788178 CACCTACTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (14 bp):
GAGTACTATCCTCA
Found at i:14789264 original size:12 final size:12
Alignment explanation
Indices: 14789247--14789278 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
14789237 TGTTTGATGA
14789247 TTAATGAATGTT
1 TTAATGAATGTT
*
14789259 TTAATGAATTTT
1 TTAATGAATGTT
14789271 TTAATGAA
1 TTAATGAA
14789279 AACTATTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (12 bp):
TTAATGAATGTT
Found at i:14789265 original size:19 final size:19
Alignment explanation
Indices: 14789228--14789265 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14789218 ATAACATGTT
*
14789228 TTAACTGAATGTTTGATGA
1 TTAACTGAATGTTTAATGA
14789247 TTAA-TGAATGTTTTAATGA
1 TTAACTGAATG-TTTAATGA
14789266 ATTTTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (19 bp):
TTAACTGAATGTTTAATGA
Found at i:14791801 original size:14 final size:14
Alignment explanation
Indices: 14791782--14791808 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14791772 AAAGCTTAAA
14791782 TTTTAAAAAATATT
1 TTTTAAAAAATATT
14791796 TTTTAAAAAATAT
1 TTTTAAAAAATAT
14791809 AAATTATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTTAAAAAATATT
Found at i:14791823 original size:18 final size:18
Alignment explanation
Indices: 14791800--14791879 Score: 63
Period size: 18 Copynumber: 4.3 Consensus size: 18
14791790 AATATTTTTT
14791800 AAAAAATATAAATTATTA
1 AAAAAATATAAATTATTA
*
14791818 AAAAAATATTAAAATA-TA
1 AAAAAATA-TAAATTATTA
* *
14791836 TAAAAATATCAAATAAATTTA
1 AAAAAATAT-AAAT-TA-TTA
* * *
14791857 AAAAATTAAAAATTAATA
1 AAAAAATATAAATTATTA
14791875 AAAAA
1 AAAAA
14791880 CTATTTAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
17 1 0.02
18 27 0.56
19 8 0.17
20 4 0.08
21 8 0.17
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAAATATAAATTATTA
Found at i:14791837 original size:28 final size:28
Alignment explanation
Indices: 14791798--14791889 Score: 87
Period size: 28 Copynumber: 3.2 Consensus size: 28
14791788 AAAATATTTT
14791798 TTAAAAAATATAAATTATTAAAAAAATA
1 TTAAAAAATATAAATTATTAAAAAAATA
* * * *
14791826 TTAAAATATATAAAAATATCAAATAAAT-
1 TTAAAAAATAT-AAATTATTAAAAAAATA
* * *
14791854 TTAAAAAATTAAAAATTAATAAAAAACTA
1 TTAAAAAA-TATAAATTATTAAAAAAATA
*
14791883 TTTAAAA
1 TTAAAAA
14791890 GTTAAGTCCA
Statistics
Matches: 49, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
28 28 0.57
29 21 0.43
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (28 bp):
TTAAAAAATATAAATTATTAAAAAAATA
Found at i:14792496 original size:10 final size:10
Alignment explanation
Indices: 14792483--14792542 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
14792473 ATTAATTTTT
14792483 AATTTTTTAA
1 AATTTTTTAA
*
14792493 AATTTTTTGA
1 AATTTTTTAA
*
14792503 ACTTTATTTAA
1 AATTT-TTTAA
*
14792514 TATTTTTATAA
1 AATTTTT-TAA
14792525 AATTTAATTTAA
1 AATTT--TTTAA
14792537 AATTTT
1 AATTTT
14792543 ATAAGATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
10 16 0.40
11 14 0.35
12 8 0.20
13 2 0.05
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:14792530 original size:22 final size:21
Alignment explanation
Indices: 14792483--14792552 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 21
14792473 ATTAATTTTT
*
14792483 AATTT-TTTAAAATTTTT-TGA
1 AATTTATTT-AAATTTTTATAA
*
14792503 ACTTTATTTAATATTTTTATAA
1 AATTTATTTAA-ATTTTTATAA
*
14792525 AATTTAATTTAAAATTTTATAA
1 AATTT-ATTTAAATTTTTATAA
*
14792547 GATTTA
1 AATTTA
14792553 AAAATAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
20 6 0.15
21 10 0.24
22 19 0.46
23 6 0.15
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (21 bp):
AATTTATTTAAATTTTTATAA
Found at i:14792553 original size:22 final size:23
Alignment explanation
Indices: 14792508--14792553 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
14792498 TTTGAACTTT
*
14792508 ATTTAATATTTTTATAAAATTTA
1 ATTTAATAATTTTATAAAATTTA
*
14792531 ATTTAA-AATTTTATAAGATTTA
1 ATTTAATAATTTTATAAAATTTA
14792553 A
1 A
14792554 AAATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
ATTTAATAATTTTATAAAATTTA
Found at i:14794832 original size:15 final size:15
Alignment explanation
Indices: 14794814--14794867 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
14794804 AATAACTTAT
14794814 TTTAAAATATTCATA
1 TTTAAAATATTCATA
* * *
14794829 TTTAATATATGCAGA
1 TTTAAAATATTCATA
*
14794844 -ATAAAATATTCATA
1 TTTAAAATATTCATA
*
14794858 TTTAATATAT
1 TTTAAAATAT
14794868 ACAGAATAAA
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.34
15 19 0.66
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (15 bp):
TTTAAAATATTCATA
Found at i:14794887 original size:27 final size:29
Alignment explanation
Indices: 14794816--14794881 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
14794806 TAACTTATTT
*
14794816 TAAAATATTCATATTTAATATATGCAGAA
1 TAAAATATTCATATTTAATATATACAGAA
14794845 TAAAATATTCATATTTAATATATACAGAA
1 TAAAATATTCATATTTAATATATACAGAA
14794874 TAAAATAT
1 TAAAATAT
14794882 GTATTTTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.38
Consensus pattern (29 bp):
TAAAATATTCATATTTAATATATACAGAA
Found at i:14795295 original size:44 final size:44
Alignment explanation
Indices: 14795207--14795297 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
14795197 GTAGGTCAAG
* *
14795207 TAATATTAAAATAATCTACACTAATCAGAGTTTAACTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAACTGAGAAAC
* *
14795251 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGATAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAACTGAGAAAC
14795295 TAA
1 TAA
14795298 AAATTGAGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAGAGTTTAACTGAGAAAC
Found at i:14795730 original size:19 final size:21
Alignment explanation
Indices: 14795697--14795735 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
14795687 TCTATTTACG
*
14795697 AAAAACCTTAGTTTT-TAGAA
1 AAAAACCGTAGTTTTGTAGAA
14795717 AAAAACCGTA-TTTTGTAGA
1 AAAAACCGTAGTTTTGTAGA
14795736 GTTGCAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (21 bp):
AAAAACCGTAGTTTTGTAGAA
Found at i:14806469 original size:44 final size:44
Alignment explanation
Indices: 14806419--14806509 Score: 128
Period size: 44 Copynumber: 2.1 Consensus size: 44
14806409 GTAGGTCAAA
* * *
14806419 TAATATTAAAATAACCTACATTAATCAGATTTTATGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGGAAAC
* * *
14806463 TAATATTAATATAACCTATACTAATCAGAGTTTAAGTGGTAAAC
1 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGGAAAC
14806507 TAA
1 TAA
14806510 AACAGAATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGGAAAC
Found at i:14811812 original size:33 final size:33
Alignment explanation
Indices: 14811775--14811842 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
14811765 AGTTTTTTCC
14811775 TATAAAAAATAATTTTTGCTATAAAAATTCATG
1 TATAAAAAATAATTTTTGCTATAAAAATTCATG
14811808 TATAAAAAATAATTTTTGCTATAAAAATTCATG
1 TATAAAAAATAATTTTTGCTATAAAAATTCATG
14811841 TA
1 TA
14811843 CTTATAAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (33 bp):
TATAAAAAATAATTTTTGCTATAAAAATTCATG
Found at i:14811832 original size:19 final size:19
Alignment explanation
Indices: 14811768--14811834 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 19
14811758 CAAAAATAGT
*
14811768 TTTTTCCTATAAAAAATAA
1 TTTTTGCTATAAAAAATAA
14811787 TTTTTGCTAT---AAA-AA
1 TTTTTGCTATAAAAAATAA
**
14811802 TTCATG-TATAAAAAATAA
1 TTTTTGCTATAAAAAATAA
14811820 TTTTTGCTATAAAAA
1 TTTTTGCTATAAAAA
14811835 TTCATGTACT
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
14 3 0.08
15 6 0.16
16 3 0.08
17 3 0.08
18 6 0.16
19 17 0.45
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.42
Consensus pattern (19 bp):
TTTTTGCTATAAAAAATAA
Found at i:14824161 original size:98 final size:98
Alignment explanation
Indices: 14823987--14824183 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
14823977 GTACAATAAA
*
14823987 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
14824052 CCTCTAGAATCCCAAACTCGGAACATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAACATTTCCTTT
*
14824085 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
14824150 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAACATTTCCTTT
14824183 A
1 A
14824184 TTATTTTTAA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAACATTTCCTTT
Found at i:14825505 original size:19 final size:19
Alignment explanation
Indices: 14825481--14825593 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
14825471 AATCATATAT
14825481 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
14825500 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
14825519 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14825538 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
14825559 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14825578 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
14825594 CTCAAAATTT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14825568 original size:40 final size:40
Alignment explanation
Indices: 14825481--14825592 Score: 183
Period size: 40 Copynumber: 2.9 Consensus size: 40
14825471 AATCATATAT
*
14825481 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
14825519 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
**
14825559 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
14825593 CCTCAAAATT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 28 0.41
40 41 0.59
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Done.