Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 51 of 216
Found at i:14832034 original size:104 final size:104
Alignment explanation
Indices: 14831912--14832135 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
14831902 AATGGATATC
14831912 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
14831977 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
14832016 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
14832081 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
14832120 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
14832136 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:14832496 original size:29 final size:29
Alignment explanation
Indices: 14832463--14832526 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
14832453 TAATCCACCA
14832463 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
14832492 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
14832522 CCCAA
1 CCCAA
14832527 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:14832500 original size:30 final size:30
Alignment explanation
Indices: 14832470--14832526 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14832460 CCACCCAACT
14832470 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
14832499 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
14832527 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:14842441 original size:39 final size:38
Alignment explanation
Indices: 14842384--14842502 Score: 139
Period size: 39 Copynumber: 3.1 Consensus size: 38
14842374 GGCTGAGGCC
** * * *
14842384 GCCTTTCGTAGGAGTGCCTTGGGTCACAGCAGGCAGTAG
1 GCCTTTCACAGGAATGCCTTGGGTCATAGCAAGCAGT-G
*
14842423 GCCTTTCACAGGAATGCCTTGGGTCATAGCATGCAGTGG
1 GCCTTTCACAGGAATGCCTTGGGTCATAGCAAGCAGT-G
* * *
14842462 GCATTTCACAAGACTGCCTTGGGTCATAGCAAGCAGTG
1 GCCTTTCACAGGAATGCCTTGGGTCATAGCAAGCAGTG
14842500 GCC
1 GCC
14842503 AAAACACAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
38 3 0.04
39 66 0.96
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (38 bp):
GCCTTTCACAGGAATGCCTTGGGTCATAGCAAGCAGTG
Found at i:14842511 original size:39 final size:39
Alignment explanation
Indices: 14842437--14842511 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
14842427 TTCACAGGAA
* * ***
14842437 TGCCTTGGGTCATAGCATGCAGTGGGCATTTCACAAGAC
1 TGCCTTGGGTCATAGCAAGCAGTGGCCAAAACACAAGAC
14842476 TGCCTTGGGTCATAGCAAGCAGTGGCCAAAACACAA
1 TGCCTTGGGTCATAGCAAGCAGTGGCCAAAACACAA
14842512 AATTTTTTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (39 bp):
TGCCTTGGGTCATAGCAAGCAGTGGCCAAAACACAAGAC
Found at i:14845923 original size:45 final size:45
Alignment explanation
Indices: 14845891--14846080 Score: 274
Period size: 45 Copynumber: 4.2 Consensus size: 45
14845881 CCAGACCAGA
14845891 AACGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCT
1 AACGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCT
* * * *
14845936 ATCGAGTAAGACCATGACTGAAATACT-TTATGGCATTACGATTTT
1 AACGAGTAAGACCATGACTGAAAGA-TGTTATGGCATCACGATTCT
* *
14845981 AACGAGTAAGACCATGACTGAAAGACGTTATGGCATCATGATTCT
1 AACGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCT
* * *
14846026 ATCGAGTAAGACCATGACTGAAAAATGTTATGGCATCACAATTCT
1 AACGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCT
*
14846071 ATCGAGTAAG
1 AACGAGTAAG
14846081 CTGAAAGACA
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
45 127 0.99
46 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (45 bp):
AACGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCT
Found at i:14846176 original size:128 final size:132
Alignment explanation
Indices: 14845897--14846169 Score: 304
Period size: 128 Copynumber: 2.1 Consensus size: 132
14845887 CAGAAACGAG
* * *
14845897 TAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAATAC
1 TAAGACCATGACTGAAAAATGTTATGGCATCACAATTCTATCGAGT-A-A-CATGACTGAAAGAC
* * * * ** * ** * * *
14845962 TTTATGGCATTACGATTTTAACGAGTAAGACCATGACTGAAAGACGTTATGGCATCATGATTCTA
63 ATTATGGAATCACGAATCAAACGAATAAGACCATGACTGAAAGACACTATGGCATCAAGATACAA
* *
14846027 TCGAG
128 TCAAA
14846032 TAAGACCATGACTGAAAAATGTTATGGCATCACAATTCTATCGAGT-A-A-G-CTGAAAGACATT
1 TAAGACCATGACTGAAAAATGTTATGGCATCACAATTCTATCGAGTAACATGACTGAAAGACATT
**
14846093 ATGGAATCACGAATCAAACGAATAAGACCATGGTTGAAAGACACTATGGCATCAAGATGACAAT-
66 ATGGAATCACGAATCAAACGAATAAGACCATGACTGAAAGACACTATGGCATCAAGAT-ACAATC
14846157 AAA
130 AAA
14846160 TAAGACCATG
1 TAAGACCATG
14846170 GTTGAAAGAC
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
128 68 0.58
129 4 0.03
130 1 0.01
132 1 0.01
135 44 0.37
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (132 bp):
TAAGACCATGACTGAAAAATGTTATGGCATCACAATTCTATCGAGTAACATGACTGAAAGACATT
ATGGAATCACGAATCAAACGAATAAGACCATGACTGAAAGACACTATGGCATCAAGATACAATCA
AA
Found at i:14856001 original size:41 final size:41
Alignment explanation
Indices: 14855940--14856223 Score: 311
Period size: 41 Copynumber: 6.9 Consensus size: 41
14855930 TTCTTACCTT
* * * ** *
14855940 TCGGGGCTTTAGCAGTGTTTTCGAAAAAGCACCGCTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
*
14855981 TCGGGGCTTTAGCGGCG-TTTTTAAAAATGCGCCGCTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTTAAAAA-GCGCCGCTAATGC
** * *
14856022 TCGGGGGTTTTAATGTCGTTTTTGAAAAAGCGCCGCTAATGC
1 TC-GGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
* *
14856064 TCGGTGTTTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
** * * *
14856105 TCGGGGTTTTAGCGGTATTTTTTAAAAAGCACCGGTAGTGC
1 TCGGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
* * *
14856146 T-TGGGTTTTAGCAGCGTTTTTTAAAAAGCGCCACTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
* * * *
14856186 TAGGGGCTTTCGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 TCGGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAA
14856224 AAACTTTTTA
Statistics
Matches: 202, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
40 40 0.20
41 127 0.63
42 26 0.13
43 9 0.04
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (41 bp):
TCGGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
Found at i:14856100 original size:83 final size:81
Alignment explanation
Indices: 14855956--14856223 Score: 306
Period size: 81 Copynumber: 3.3 Consensus size: 81
14855946 CTTTAGCAGT
* *
14855956 GTTTTCGAAAAAGCACCGCTAATGCTCGGGGCTTTAGCGGCG-TTTTTAAAAATGCGCCGCTAAT
1 GTTTTTGAAAAAGCACCGCTAATGCTC-GGGTTTTAGCGGCGTTTTTTAAAAA-GCGCCGCTAAT
*
14856020 GCTCGGGGGTTTTAATGTC
64 GCTC-GGGGTTTTAACGTC
* *
14856039 GTTTTTGAAAAAGCGCCGCTAATGCTCGGTGTTTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATG
1 GTTTTTGAAAAAGCACCGCTAATGCTCGG-GTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATG
*
14856104 CTCGGGGTTTTAGCGGT-
65 CTCGGGGTTTTAAC-GTC
* * * * * * *
14856121 ATTTTTTAAAAAGCACCGGTAGTGCTTGGGTTTTAGCAGCGTTTTTTAAAAAGCGCCACTAATGC
1 GTTTTTGAAAAAGCACCGCTAATGCTCGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
* * ** *
14856186 TAGGGGCTTTCGCGGC
66 TCGGGGTTTTAACGTC
*
14856202 GTTTTTGAAAAAGCGCCGCTAA
1 GTTTTTGAAAAAGCACCGCTAA
14856224 AAACTTTTTA
Statistics
Matches: 157, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.01
81 60 0.38
82 34 0.22
83 52 0.33
84 10 0.06
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (81 bp):
GTTTTTGAAAAAGCACCGCTAATGCTCGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
TCGGGGTTTTAACGTC
Found at i:14856603 original size:14 final size:14
Alignment explanation
Indices: 14856584--14856639 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
14856574 GTTTAGGGAG
14856584 TATGGATTTAGGGT
1 TATGGATTTAGGGT
14856598 TATGGA-TTAGGGAT
1 TATGGATTTAGGG-T
14856612 TAT-GATTTAAGGGT
1 TATGGATTT-AGGGT
* *
14856626 T-GGGATTTAAGGT
1 TATGGATTTAGGGT
14856639 T
1 T
14856640 TAGGGGTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
13 13 0.36
14 19 0.53
15 4 0.11
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (14 bp):
TATGGATTTAGGGT
Found at i:14857105 original size:21 final size:22
Alignment explanation
Indices: 14857081--14857126 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
14857071 GGATTTTTGG
14857081 TTTAGAGTTTAAGATTTAA-GT
1 TTTAGAGTTTAAGATTTAAGGT
* *
14857102 TTTAGGGTTTAATATTTAAGGT
1 TTTAGAGTTTAAGATTTAAGGT
14857124 TTT
1 TTT
14857127 GGGGTTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.52
Consensus pattern (22 bp):
TTTAGAGTTTAAGATTTAAGGT
Found at i:14858630 original size:105 final size:105
Alignment explanation
Indices: 14858504--14858713 Score: 375
Period size: 105 Copynumber: 2.0 Consensus size: 105
14858494 TTTATTCTTA
*
14858504 ACTCATTTGCAGAGGAGAAATTTCCTAAACCCACCAATGTTATTCATGTTCTATTCTGTAAATAT
1 ACTCATTTACAGAGGAGAAATTTCCTAAACCCACCAATGTTATTCATGTTCTATTCTGTAAATAT
14858569 TCTGTAACTATTTAAGGATTCTGCCTCTTTTTACCTTTGT
66 TCTGTAACTATTTAAGGATTCTGCCTCTTTTTACCTTTGT
* *
14858609 ACTCATTTATAGAGGAGAAATTTCCTAAACCCACCAATGTTATTCATGTTTTATTCTGTAAATAT
1 ACTCATTTACAGAGGAGAAATTTCCTAAACCCACCAATGTTATTCATGTTCTATTCTGTAAATAT
* *
14858674 TCTGTAACTATTTAGGGATTCTGCCTCTTTTTACTTTTGT
66 TCTGTAACTATTTAAGGATTCTGCCTCTTTTTACCTTTGT
14858714 GTAAAGGTAT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 100 1.00
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (105 bp):
ACTCATTTACAGAGGAGAAATTTCCTAAACCCACCAATGTTATTCATGTTCTATTCTGTAAATAT
TCTGTAACTATTTAAGGATTCTGCCTCTTTTTACCTTTGT
Found at i:14860227 original size:30 final size:31
Alignment explanation
Indices: 14860175--14860234 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
14860165 TTAATTTATT
14860175 TTAAAGTTCAAATTTACATAACTTACATAAA
1 TTAAAGTTCAAATTTACATAACTTACATAAA
14860206 TTAAAGTTCAAATTT-CATAACTTACATAA
1 TTAAAGTTCAAATTTACATAACTTACATAA
14860235 TTTACATAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 14 0.48
31 15 0.52
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (31 bp):
TTAAAGTTCAAATTTACATAACTTACATAAA
Found at i:14860337 original size:266 final size:268
Alignment explanation
Indices: 14860027--14860513 Score: 854
Period size: 266 Copynumber: 1.8 Consensus size: 268
14860017 TTTTTTAAAT
*
14860027 TTTATGCTATTTTAATTACGAAAAACATTTTTGTTTTGTTTTCTTTTAGTTTTAATTTACCTAAT
1 TTTATGCTATTTTAATCACGAAAAACATTTTTGTTTTGTTTTCTTTTAGTTTTAATTTACCTAAT
*
14860092 TAAATAAATTGTATTCAAAGTTATATTTTAAATAGTTTATTTAATTTGAATGACGGAAAAAATTT
66 TAAATAAAATGTATTCAAAGTTATATTTTAAATAGTTTATTTAATTTGAATGACGGAAAAAATTT
14860157 TCAAACTTTTAATTTATTTTAAAGTTCAA-ATTTACATAACTTACATAAATTAAAGTTCAAATTT
131 TCAAACTTTTAATTTATTTTAAAGTT-AATATTTACATAACTTACATAAATTAAAGTTCAAATTT
*
14860221 CATAACTTACATAATTTACATAACTTATATAATTTCAGAATGTTTTCATTCTTCTTTTATCTTTT
195 CATAACTTACATAAATTACATAACTTATATAATTTCAGAATGTTTTCATTCTTCTTTTATCTTTT
14860286 TTTACTTAC
260 TTTACTTAC
* * *
14860295 TTTATGCTATTTTAATCATG-AAAATA-TTTTGTTTTGTTTTCTTTTATTTTTAATTTACCTAAT
1 TTTATGCTATTTTAATCACGAAAAACATTTTTGTTTTGTTTTCTTTTAGTTTTAATTTACCTAAT
* * *
14860358 TAAATAAAATGTATTCAAAGTTATATTTTAAATATTTTATTTAATTTGAATGAGGGAAAAATTTT
66 TAAATAAAATGTATTCAAAGTTATATTTTAAATAGTTTATTTAATTTGAATGACGGAAAAAATTT
14860423 TCAAACTTTTAATTTATTTTAAAGTTAATATTTACATAACTTACATAAATTAAAGTTCAAATTTC
131 TCAAACTTTTAATTTATTTTAAAGTTAATATTTACATAACTTACATAAATTAAAGTTCAAATTTC
*
14860488 ATAACTTGCATAAATTACATAACTTA
196 ATAACTTACATAAATTACATAACTTA
14860514 CTTAATACAA
Statistics
Matches: 208, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
265 2 0.01
266 183 0.88
267 5 0.02
268 18 0.09
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (268 bp):
TTTATGCTATTTTAATCACGAAAAACATTTTTGTTTTGTTTTCTTTTAGTTTTAATTTACCTAAT
TAAATAAAATGTATTCAAAGTTATATTTTAAATAGTTTATTTAATTTGAATGACGGAAAAAATTT
TCAAACTTTTAATTTATTTTAAAGTTAATATTTACATAACTTACATAAATTAAAGTTCAAATTTC
ATAACTTACATAAATTACATAACTTATATAATTTCAGAATGTTTTCATTCTTCTTTTATCTTTTT
TTACTTAC
Found at i:14860493 original size:30 final size:31
Alignment explanation
Indices: 14860441--14860504 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
14860431 TTAATTTATT
14860441 TTAAAGTTAATATTTACATAACTTACATAAA
1 TTAAAGTTAATATTTACATAACTTACATAAA
*
14860472 TTAAAGTTCAA-ATTT-CATAACTTGCATAAA
1 TTAAAGTT-AATATTTACATAACTTACATAAA
14860502 TTA
1 TTA
14860505 CATAACTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 17 0.55
31 12 0.39
32 2 0.06
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (31 bp):
TTAAAGTTAATATTTACATAACTTACATAAA
Found at i:14860596 original size:30 final size:30
Alignment explanation
Indices: 14860524--14860597 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 30
14860514 CTTAATACAA
* *
14860524 AACTTATATAATATTAAGATCAAATTTCAT
1 AACTTACATAATTTTAAGATCAAATTTCAT
* * *
14860554 AACTTGCATAATTTTAAGATTAGATTTCAT
1 AACTTACATAATTTTAAGATCAAATTTCAT
*
14860584 AACTTACGTAATTT
1 AACTTACATAATTT
14860598 ATATAACTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTACATAATTTTAAGATCAAATTTCAT
Found at i:14861423 original size:43 final size:43
Alignment explanation
Indices: 14861279--14861439 Score: 207
Period size: 43 Copynumber: 3.8 Consensus size: 43
14861269 TATTAAAAAA
* * *
14861279 CGCCGCT-AAAGTCGTGTTCTTTAGCGGCGTTTGTGGGAGAAG
1 CGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAGAAG
* * *
14861321 CGCCGCTAAAAGTCATAATCTATAGCGGCGTTTGTAGGAAAAG
1 CGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAGAAG
* *
14861364 CGCTGCTAAAAGTCATGATCTATAGCGACGTTTGTGGGAGAAG
1 CGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAGAAG
* * * *
14861407 CGCCGCTAAAGGTCATGACCTTTAGTGGCGTTT
1 CGCCGCTAAAAGTCATGATCTATAGCGGCGTTT
14861440 CTTTCTAAAA
Statistics
Matches: 101, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 7 0.07
43 94 0.93
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (43 bp):
CGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAGAAG
Found at i:14863368 original size:43 final size:42
Alignment explanation
Indices: 14863286--14863370 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
14863276 TAGCAGCTTT
*
14863286 CTTTTTCACAAACGCCGCTAAAGAACATGATCTTTAGCGGCG
1 CTTTTTCACAAACGCCGCTAAAGAACATGATCTTCAGCGGCG
** * *
14863328 CTTTTATCACAAACGTTGCTAAAAGTAC-TGTTCTTCAGCGGCG
1 CTTTT-TCACAAACGCCGCT-AAAGAACATGATCTTCAGCGGCG
14863371 TTTATAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
42 5 0.14
43 25 0.69
44 6 0.17
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (42 bp):
CTTTTTCACAAACGCCGCTAAAGAACATGATCTTCAGCGGCG
Found at i:14866352 original size:40 final size:41
Alignment explanation
Indices: 14866296--14866381 Score: 165
Period size: 40 Copynumber: 2.1 Consensus size: 41
14866286 TAATTGCATG
14866296 AAAAATAAGCATACATCTTCAAATGAATGATTGAATATATT
1 AAAAATAAGCATACATCTTCAAATGAATGATTGAATATATT
14866337 AAAAA-AAGCATACATCTTCAAATGAATGATTGAATATATT
1 AAAAATAAGCATACATCTTCAAATGAATGATTGAATATATT
14866377 AAAAA
1 AAAAA
14866382 GTTAGGGTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 40 0.89
41 5 0.11
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.29
Consensus pattern (41 bp):
AAAAATAAGCATACATCTTCAAATGAATGATTGAATATATT
Found at i:14867601 original size:16 final size:16
Alignment explanation
Indices: 14867580--14867612 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14867570 TTCGCTGTAT
*
14867580 TGGAATAGAGGCGTAA
1 TGGAATAGAGCCGTAA
14867596 TGGAATAGAGCCGTAA
1 TGGAATAGAGCCGTAA
14867612 T
1 T
14867613 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.09, G:0.33, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGCCGTAA
Found at i:14867866 original size:18 final size:17
Alignment explanation
Indices: 14867845--14867879 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14867835 TTATTATTAA
*
14867845 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14867863 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14867880 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14868043 original size:120 final size:120
Alignment explanation
Indices: 14867825--14868330 Score: 807
Period size: 120 Copynumber: 4.2 Consensus size: 120
14867815 TTAATCATAT
*
14867825 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
14867890 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
14867945 TTTAACATAATTATTATTAAATACATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
14868010 CAATATTCTTATATGAATTTACTAAAATTATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
14868065 TTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* *
14868130 AAATATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * * *
14868185 TTTAAAATAATAATTATTAAATATAATTTAA-TAAAAAACTATAATTTAATAAAATTCTTAATAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATA-TATAATTTAATAAAATTCTTAATAA
14868249 TAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 T-AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
14868306 TCTAAAATAATTATTATTAAATATA
1 TTTAAAATAATTATTATTAAATATA
14868331 ATCTAAAATA
Statistics
Matches: 364, Mismatches: 20, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
119 6 0.02
120 282 0.77
121 76 0.21
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:14868106 original size:18 final size:17
Alignment explanation
Indices: 14868083--14868119 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
14868073 AATTATTATT
14868083 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
14868099 AAATATATGATTTAATA
1 AAATATATGATTTAATA
14868116 AAAT
1 AAAT
14868120 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:14868199 original size:13 final size:12
Alignment explanation
Indices: 14868175--14868215 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
14868165 TATAATAGTA
14868175 TAAAATATAATT
1 TAAAATATAATT
14868187 TAAAATAATAATT
1 TAAAAT-ATAATT
*
14868200 ATTAAATATAATT
1 -TAAAATATAATT
14868213 TAA
1 TAA
14868216 TAAAAAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:14868251 original size:18 final size:17
Alignment explanation
Indices: 14868208--14868261 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
14868198 TTATTAAATA
**
14868208 TAATTTAATAAAAAACT
1 TAATTTAATAAAATTCT
14868225 ATAATTTAATAAAATTCT
1 -TAATTTAATAAAATTCT
*
14868243 TAATATTAA-AATATTCT
1 TAAT-TTAATAAAATTCT
14868260 TA
1 TA
14868262 TATGAATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 13 0.41
18 19 0.59
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATTTAATAAAATTCT
Found at i:14868328 original size:26 final size:26
Alignment explanation
Indices: 14868298--14868358 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
14868288 TAATACTATA
14868298 AAATATAATCTAAAATAATTATTATT
1 AAATATAATCTAAAATAATTATTATT
14868324 AAATATAATCTAAAATAATTATTATT
1 AAATATAATCTAAAATAATTATTATT
14868350 AAATATAAT
1 AAATATAAT
14868359 TTAATAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (26 bp):
AAATATAATCTAAAATAATTATTATT
Found at i:14868359 original size:16 final size:15
Alignment explanation
Indices: 14868308--14868359 Score: 51
Period size: 16 Copynumber: 3.7 Consensus size: 15
14868298 AAATATAATC
14868308 TAAAATAATTATTAT
1 TAAAATAATTATTAT
14868323 T-AAAT-A-TA--AT
1 TAAAATAATTATTAT
14868333 CTAAAATAATTATTAT
1 -TAAAATAATTATTAT
14868349 TAAATATAATT
1 TAAA-ATAATT
14868360 TAATAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 13
0.70 0.00 0.30
Matches are distributed among these distances:
10 2 0.07
11 1 0.03
12 6 0.20
13 2 0.07
14 6 0.20
15 5 0.17
16 8 0.27
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAAATAATTATTAT
Found at i:14868458 original size:145 final size:147
Alignment explanation
Indices: 14868177--14868462 Score: 515
Period size: 145 Copynumber: 2.0 Consensus size: 147
14868167 TAATAGTATA
*
14868177 AAATATAATTTAAAATAATAATTATTAAATATAATTTAATAAAAAACTATAATTTAATAAAATTC
1 AAATATAATCTAAAATAATAATTATTAAATATAATTTAATAAAAAACTATAATTTAATAAAATTC
14868242 TTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAT
66 TTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAT
14868307 CTAAAATAATTATTATT
131 CTAAAATAATTATTATT
*
14868324 AAATATAATCTAAAATAATTATTATTAAATATAATTTAATAAAAATA-TATAATTTAAT-AAATT
1 AAATATAATCTAAAATAATAATTATTAAATATAATTTAATAAAAA-ACTATAATTTAATAAAATT
*
14868387 CTTAATATT-AAATATTTTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 CTTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
14868451 TCTAAAATAATT
130 TCTAAAATAATT
14868463 GATTTTGTGG
Statistics
Matches: 135, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
145 66 0.49
146 14 0.10
147 54 0.40
148 1 0.01
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (147 bp):
AAATATAATCTAAAATAATAATTATTAAATATAATTTAATAAAAAACTATAATTTAATAAAATTC
TTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAT
CTAAAATAATTATTATT
Found at i:14870360 original size:19 final size:19
Alignment explanation
Indices: 14870336--14870374 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
14870326 CATATGCCCT
14870336 ACACATATTCAGAGGATTG
1 ACACATATTCAGAGGATTG
14870355 ACACATATTCAGAGGATTG
1 ACACATATTCAGAGGATTG
14870374 A
1 A
14870375 GATAAAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (19 bp):
ACACATATTCAGAGGATTG
Found at i:14871432 original size:19 final size:19
Alignment explanation
Indices: 14871405--14871441 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14871395 AACAGAAGAC
14871405 GCAAATCGGCAGAAACTGA
1 GCAAATCGGCAGAAACTGA
*
14871424 GCAAGTCGGCAGAAACTG
1 GCAAATCGGCAGAAACTG
14871442 TGAGAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.22, G:0.30, T:0.11
Consensus pattern (19 bp):
GCAAATCGGCAGAAACTGA
Found at i:14875338 original size:15 final size:15
Alignment explanation
Indices: 14875309--14875346 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
14875299 AACCCTTAAA
*
14875309 CCATAAATC-ATAAT
1 CCATAAACCAATAAT
*
14875323 CCCTAAACCAATAAT
1 CCATAAACCAATAAT
14875338 CCATAAACC
1 CCATAAACC
14875347 TTAAAATAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAACCAATAAT
Found at i:14875351 original size:22 final size:21
Alignment explanation
Indices: 14875302--14875351 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
14875292 AAACCCCAAC
*
14875302 CCTTAAACCATAAATCATAAT
1 CCTTAAACCATAAATCATAAA
*
14875323 CCCTAAACCA-ATAATCCATAAA
1 CCTTAAACCATA-AAT-CATAAA
14875345 CCTTAAA
1 CCTTAAA
14875352 ATAGTAACTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 12 0.50
22 11 0.46
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (21 bp):
CCTTAAACCATAAATCATAAA
Found at i:14875730 original size:40 final size:40
Alignment explanation
Indices: 14875686--14876166 Score: 428
Period size: 40 Copynumber: 12.2 Consensus size: 40
14875676 TTTTTACGGT
* * * *
14875686 GTTTTTGATAAAGCGCCGCTAATGCTCGATCTACAGCGTC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
* * * *
14875726 GTTTTTCTAAAAGCGACGCTAATGCTCCATTTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
* * *
14875766 GTTTTTCAAAAAGTGCCGCTAATGGTCGA-CATATAGCGAC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATC-TATAGCGGC
* * *
14875806 GTTTTTCAAAAAACGCCGTTAATGCTCGATCTATAGAGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
* * *
14875846 GATTTTCAAAAAGCGCCACTAATGCTCCATCTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
* *
14875886 GTTTTTCAAAAAGCGCCGCTAATGGTCGA-CATATAGCGAC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATC-TATAGCGGC
* **
14875926 GTTTTTCAAAAAGCGCCGCTAATACTCGATCTATAGAAGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
* *
14875966 GATTTTCAAAAA-CTGCCGCTAATGCTCGATCTATAGCAGC
1 GTTTTTCAAAAAGC-GCCGCTAATGCTCGATCTATAGCGGC
* *
14876006 GTTTTTCAAAAAGCGCTTG-TAATGC-C-A-CTA-A--AGC
1 GTTTTTCAAAAAGCGC-CGCTAATGCTCGATCTATAGCGGC
*** * * ** ** * * * *
14876040 --TCAACAAAAAACGACGACGTTGTGCTTAATTTTTTGCGGT
1 GTTTTTCAAAAAGCGCCG-C-TAATGCTCGATCTATAGCGGC
* * *
14876080 GTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGTGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
*
14876120 GTTTTTCAAAAAAGCGCCGCTAATGCTCGATCTATAGCGGT
1 GTTTTTC-AAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
14876161 GTTTTT
1 GTTTTT
14876167 TTATTCAAAC
Statistics
Matches: 346, Mismatches: 76, Indels: 37
0.75 0.17 0.08
Matches are distributed among these distances:
31 1 0.00
32 9 0.03
34 7 0.02
36 2 0.01
37 4 0.01
38 1 0.00
39 3 0.01
40 268 0.77
41 40 0.12
42 11 0.03
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
Found at i:14875904 original size:120 final size:120
Alignment explanation
Indices: 14875699--14876021 Score: 495
Period size: 120 Copynumber: 2.7 Consensus size: 120
14875689 TTTGATAAAG
* * * * * * *
14875699 CGCCGCTAATGCTCGATCTACAGCGTCGTTTTTCTAAAAGCGACGCTAATGCTCCATTTATAGCG
1 CGCCGCTAATGCTCGATCTATAGAGGCGATTTTCAAAAAGCGCCGCTAATGCTCCATCTATAGCG
*
14875764 GCGTTTTTCAAAAAGTGCCGCTAATGGTCGACATATAGCGACGTTTTTCAAAAAA
66 GCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGACGTTTTTCAAAAAA
* *
14875819 CGCCGTTAATGCTCGATCTATAGAGGCGATTTTCAAAAAGCGCCACTAATGCTCCATCTATAGCG
1 CGCCGCTAATGCTCGATCTATAGAGGCGATTTTCAAAAAGCGCCGCTAATGCTCCATCTATAGCG
*
14875884 GCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGACGTTTTTCAAAAAG
66 GCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGACGTTTTTCAAAAAA
* * *
14875939 CGCCGCTAATACTCGATCTATAGAAGCGATTTTCAAAAA-CTGCCGCTAATGCTCGATCTATAGC
1 CGCCGCTAATGCTCGATCTATAGAGGCGATTTTCAAAAAGC-GCCGCTAATGCTCCATCTATAGC
*
14876003 AGCGTTTTTCAAAAAGCGC
65 GGCGTTTTTCAAAAAGCGC
14876022 TTGTAATGCC
Statistics
Matches: 185, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
119 1 0.01
120 184 0.99
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (120 bp):
CGCCGCTAATGCTCGATCTATAGAGGCGATTTTCAAAAAGCGCCGCTAATGCTCCATCTATAGCG
GCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGACGTTTTTCAAAAAA
Found at i:14876144 original size:41 final size:40
Alignment explanation
Indices: 14876075--14876166 Score: 130
Period size: 41 Copynumber: 2.3 Consensus size: 40
14876065 TTAATTTTTT
* *
14876075 GCGGTGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
* *
14876115 GTGGCGTTTTTCAAAAAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTC-AAAAAGCGCCGCTAATGCTCGACCTATA
*
14876156 GCGGTGTTTTT
1 GCGGCGTTTTT
14876167 TTATTCAAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
40 10 0.22
41 35 0.78
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
Found at i:14880924 original size:55 final size:56
Alignment explanation
Indices: 14880829--14880941 Score: 167
Period size: 54 Copynumber: 2.0 Consensus size: 56
14880819 TAAAAAAATA
14880829 ATCACACATTATATAAAAAAGTCAGTAATTTATACTAAAAA-AACAACATTATTAT
1 ATCACACATTATATAAAAAAGTCAGTAATTTATACTAAAAACAACAACATTATTAT
* * * *
14880884 ATCACACATTATAT-AAAAATTCAGTAATTTATATTAAAAAACAACACCATTGTTAT
1 ATCACACATTATATAAAAAAGTCAGTAATTTATACT-AAAAACAACAACATTATTAT
14880940 AT
1 AT
14880942 TTCTAGGAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 19 0.37
55 19 0.37
56 14 0.27
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.33
Consensus pattern (56 bp):
ATCACACATTATATAAAAAAGTCAGTAATTTATACTAAAAACAACAACATTATTAT
Found at i:14881267 original size:20 final size:19
Alignment explanation
Indices: 14881242--14881309 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 19
14881232 AAAAATATAA
14881242 ATTTTGAAATTTATATAAA-T
1 ATTTTG-AATTTATA-AAATT
14881262 ATTTTGAATTTA-AAAATT
1 ATTTTGAATTTATAAAATT
*
14881280 ATTTTGAATTTTTAAAAATT
1 ATTTTGAATTTAT-AAAATT
14881300 ATTTTGAATT
1 ATTTTGAATT
14881310 ATTTTGTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
17 3 0.07
18 13 0.30
19 6 0.14
20 22 0.50
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
ATTTTGAATTTATAAAATT
Found at i:14887110 original size:13 final size:13
Alignment explanation
Indices: 14887092--14887116 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14887082 TCAAGGCAAA
14887092 TAATGCTATCAAC
1 TAATGCTATCAAC
14887105 TAATGCTATCAA
1 TAATGCTATCAA
14887117 TACTTGATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (13 bp):
TAATGCTATCAAC
Found at i:14889461 original size:6 final size:6
Alignment explanation
Indices: 14889447--14889494 Score: 87
Period size: 6 Copynumber: 8.0 Consensus size: 6
14889437 AACGGAAGAG
*
14889447 AGTGGA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA
1 AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA
14889495 GAGGCAGCTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.48, C:0.00, G:0.35, T:0.17
Consensus pattern (6 bp):
AGTGAA
Found at i:14898422 original size:15 final size:15
Alignment explanation
Indices: 14898397--14898431 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
14898387 AACTCTATTT
*
14898397 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
14898411 TAATTAATATTAAGA
1 TAATTAATATTAAGA
14898426 TAATTA
1 TAATTA
14898432 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:14918330 original size:22 final size:21
Alignment explanation
Indices: 14918304--14918362 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
14918294 TAAATAATTT
14918304 AAAATTTATAAAAATATTAAA
1 AAAATTTATAAAAATATTAAA
* * * *
14918325 CAAAATTAATTCAAAATTTTTAA
1 -AAAATTTA-TAAAAATATTAAA
14918348 AAAATTATATAAAAA
1 AAAATT-TATAAAAA
14918363 GTTTAGGAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAATTTATAAAAATATTAAA
Found at i:14920875 original size:30 final size:31
Alignment explanation
Indices: 14920831--14920890 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 31
14920821 TTCTTATGCC
14920831 AATATTTCGATACCCATATCTTTGACTTTTT
1 AATATTTCGATACCCATATCTTTGACTTTTT
14920862 AATATTT-GATACCCATATCTTTGACTTTT
1 AATATTTCGATACCCATATCTTTGACTTTT
14920891 CATAATATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (31 bp):
AATATTTCGATACCCATATCTTTGACTTTTT
Found at i:14922254 original size:30 final size:30
Alignment explanation
Indices: 14922220--14922284 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
14922210 AGTTAGGAGT
14922220 ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
1 ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
*
14922250 ATTTGTATGTAGTTTAAAGGTGGATAAGAG
1 ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
14922280 ATTTG
1 ATTTG
14922285 GATTACCCCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.31, T:0.37
Consensus pattern (30 bp):
ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
Found at i:14930742 original size:21 final size:21
Alignment explanation
Indices: 14930710--14930750 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14930700 GAACAATTGG
14930710 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
14930731 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
14930751 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:14936144 original size:15 final size:15
Alignment explanation
Indices: 14936089--14936145 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
14936079 TTTATATTAC
14936089 AAAATATTTATTATT
1 AAAATATTTATTATT
** *
14936104 AATGTATTTATAATTGT
1 AAAATATTTATTA-T-T
14936121 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
14936138 AAAATATT
1 AAAATATT
14936146 AATATTGAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 17 0.53
16 2 0.06
17 2 0.06
18 2 0.06
19 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:14936197 original size:13 final size:13
Alignment explanation
Indices: 14936179--14936217 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
14936169 ATATGAAGAA
14936179 TATTATTTAAAAT
1 TATTATTTAAAAT
*
14936192 TATTATTTAAATTT
1 TATTATTTAAA-AT
14936206 TATTA-TTAAAAT
1 TATTATTTAAAAT
14936218 AAAATTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 1 0.04
13 16 0.70
14 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTATTTAAAAT
Found at i:14936210 original size:14 final size:14
Alignment explanation
Indices: 14936179--14936218 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
14936169 ATATGAAGAA
14936179 TATTATTTAAA-AT
1 TATTATTTAAATAT
*
14936192 TATTATTTAAATTT
1 TATTATTTAAATAT
*
14936206 TATTATTAAAATA
1 TATTATTTAAATA
14936219 AAATTGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTATTTAAATAT
Found at i:14948553 original size:20 final size:20
Alignment explanation
Indices: 14948479--14948552 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 20
14948469 AAAGCAGGGA
14948479 CACCGAAGTGCAAACAGAGG
1 CACCGAAGTGCAAACAGAGG
* *
14948499 CACCAAAGTGCAAACAAAGG
1 CACCGAAGTGCAAACAGAGG
* *
14948519 CACCGGAGTGCAAATAGAGG
1 CACCGAAGTGCAAACAGAGG
*
14948539 CACTGAAGTGCAAA
1 CACCGAAGTGCAAA
14948553 TCCCGTACAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.42, C:0.23, G:0.27, T:0.08
Consensus pattern (20 bp):
CACCGAAGTGCAAACAGAGG
Found at i:14948724 original size:2 final size:2
Alignment explanation
Indices: 14948717--14948747 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
14948707 TTCCATAAAC
14948717 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14948748 TTCATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14950491 original size:8 final size:8
Alignment explanation
Indices: 14950478--14950504 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
14950468 AATCTTTCTG
14950478 ATTGATTT
1 ATTGATTT
14950486 ATTGATTT
1 ATTGATTT
14950494 ATTGATTT
1 ATTGATTT
14950502 ATT
1 ATT
14950505 TCGTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (8 bp):
ATTGATTT
Found at i:14953890 original size:19 final size:19
Alignment explanation
Indices: 14953866--14953912 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
14953856 TTATTCCACA
14953866 ATTTTCACAATATCATTTC
1 ATTTTCACAATATCATTTC
14953885 ATTTTCACAATATCATTTC
1 ATTTTCACAATATCATTTC
14953904 ATTTTCACA
1 ATTTTCACA
14953913 TTTTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTTCACAATATCATTTC
Found at i:14957234 original size:29 final size:30
Alignment explanation
Indices: 14957124--14957250 Score: 102
Period size: 29 Copynumber: 4.4 Consensus size: 30
14957114 GAGCTTTTTT
* * *
14957124 TGGCTATCTCTGGTAT-AAGAAAGTCTTTG
1 TGGCGATCTCTGTTATAAAGAAAGCCTTTG
* * * *
14957153 TGGTGATCTTTGTTAT-AAGGAAGTCTTTG
1 TGGCGATCTCTGTTATAAAGAAAGCCTTTG
* **
14957182 TGGCAATCTC--CAATAAATGAAAGCCTTTG
1 TGGCGATCTCTGTTATAAA-GAAAGCCTTTG
14957211 TGGCGATCTCTGTTATAAAG-AAGCCTTTG
1 TGGCGATCTCTGTTATAAAGAAAGCCTTTG
* *
14957240 TGACTATCTCT
1 TGGCGATCTCT
14957251 TAATGAATGC
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
27 2 0.03
28 2 0.03
29 67 0.87
30 1 0.01
31 5 0.06
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (30 bp):
TGGCGATCTCTGTTATAAAGAAAGCCTTTG
Found at i:14959361 original size:16 final size:17
Alignment explanation
Indices: 14959340--14959384 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
14959330 ATAAAACAAT
*
14959340 TTAAAATAAT-TTAATA
1 TTAAAATAATAATAATA
14959356 TTAAAATAATAAAATAATA
1 TTAAAATAAT--AATAATA
14959375 TTAAAATAAT
1 TTAAAATAAT
14959385 CAAAACAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 10 0.40
19 15 0.60
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAATAATAATAATA
Found at i:14959373 original size:19 final size:20
Alignment explanation
Indices: 14959351--14959394 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
14959341 TAAAATAATT
14959351 TAATATTAAAATAAT-AAAA
1 TAATATTAAAATAATCAAAA
14959370 TAATATTAAAATAATCAAAA
1 TAATATTAAAATAATCAAAA
*
14959390 CAATA
1 TAATA
14959395 ATCTTTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
TAATATTAAAATAATCAAAA
Found at i:14960365 original size:19 final size:18
Alignment explanation
Indices: 14960341--14960375 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14960331 AACAAATAAT
*
14960341 TTAAAATTTATAAAAAAA
1 TTAAAAATTATAAAAAAA
14960359 TTAAAAATTATAAAAAA
1 TTAAAAATTATAAAAAA
14960376 GTACAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TTAAAAATTATAAAAAAA
Found at i:14964385 original size:9 final size:9
Alignment explanation
Indices: 14964371--14964400 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14964361 GTTAAACGAA
14964371 TCGAGTTAT
1 TCGAGTTAT
*
14964380 TCGAGTTAA
1 TCGAGTTAT
14964389 TCGAGTTAT
1 TCGAGTTAT
14964398 TCG
1 TCG
14964401 GATCAACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:14964472 original size:9 final size:9
Alignment explanation
Indices: 14964455--14964491 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14964445 TGAGTTTTCG
14964455 AATTCGAAT
1 AATTCGAAT
*
14964464 AACTCGAAT
1 AATTCGAAT
14964473 AATTCGAAT
1 AATTCGAAT
14964482 AATTCGAAT
1 AATTCGAAT
14964491 A
1 A
14964492 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14964709 original size:30 final size:31
Alignment explanation
Indices: 14964675--14964734 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
14964665 AAACATTTTA
*
14964675 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
14964705 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
14964735 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:14965495 original size:5 final size:5
Alignment explanation
Indices: 14965485--14965515 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
14965475 CTTGAAAATT
14965485 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
14965516 CGAATGCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:14966584 original size:29 final size:29
Alignment explanation
Indices: 14966521--14966592 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 29
14966511 TATAAAGGCT
* * **
14966521 TATTCTTGTAAATTTTTAAAAAATTGGTC
1 TATTTTTGTAAATTTTTAAAAAAATGACC
14966550 TATTTTTGT-AATATTTTAAAAAAATGACC
1 TATTTTTGTAAAT-TTTTAAAAAAATGACC
* *
14966579 T-CTTTTGAAAATTT
1 TATTTTTGTAAATTT
14966593 AGTCTGAGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
28 10 0.29
29 25 0.71
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.49
Consensus pattern (29 bp):
TATTTTTGTAAATTTTTAAAAAAATGACC
Found at i:14967187 original size:31 final size:30
Alignment explanation
Indices: 14967145--14967204 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14967135 GACAAGGTCA
*
14967145 TTTTTTACAAAACATTATCAGATTAGGCCAT
1 TTTTTTACAAAA-ATTATCAGATTAAGCCAT
* *
14967176 TTTTTTTCAAAATTTATCAGATTAAGCCA
1 TTTTTTACAAAAATTATCAGATTAAGCCA
14967205 ATTTGGGAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (30 bp):
TTTTTTACAAAAATTATCAGATTAAGCCAT
Found at i:14971967 original size:13 final size:13
Alignment explanation
Indices: 14971949--14971973 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14971939 TAATGGTATA
14971949 TTGAATCCATGAT
1 TTGAATCCATGAT
14971962 TTGAATCCATGA
1 TTGAATCCATGA
14971974 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:14973877 original size:25 final size:25
Alignment explanation
Indices: 14973849--14973927 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
14973839 CTAATGGCCG
14973849 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
14973874 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
14973896 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
14973921 ATGTGAT
1 ATGTGAT
14973928 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:14973877 original size:47 final size:47
Alignment explanation
Indices: 14973824--14973977 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
14973814 ACAAGATATG
14973824 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
14973871 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
14973918 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
14973965 TATATGTGATAAG
1 TATATGTGATAAG
14973978 TCCCGAAGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:14983980 original size:40 final size:40
Alignment explanation
Indices: 14983925--14984006 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
14983915 CTTAAACTCA
14983925 CTTTTCTAGTCAACAACACGATGAAGCAAACAAATTGGTG
1 CTTTTCTAGTCAACAACACGATGAAGCAAACAAATTGGTG
*
14983965 CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
1 CTTTTCTAGTCAACAACACGATGAAGCAAACAAATTGGTG
14984005 CT
1 CT
14984007 AACTTACTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (40 bp):
CTTTTCTAGTCAACAACACGATGAAGCAAACAAATTGGTG
Found at i:14990640 original size:36 final size:36
Alignment explanation
Indices: 14990593--14990663 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
14990583 GGAGCACATC
* *
14990593 AGTCAAAATAGATCCGAAAGACTGCTGAACTGAATT
1 AGTCAAAATAGATCCAAAAGACTACTGAACTGAATT
* *
14990629 AGTCAGAATAGATCCAAAAGGCTACTGAACTGAAT
1 AGTCAAAATAGATCCAAAAGACTACTGAACTGAAT
14990664 AGAGTTTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (36 bp):
AGTCAAAATAGATCCAAAAGACTACTGAACTGAATT
Found at i:14994355 original size:23 final size:22
Alignment explanation
Indices: 14994315--14994374 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
14994305 AATTATTGTA
* * * *
14994315 ATTATAATTTAAGATCAAATATT
1 ATTATAA-TTATGGTCAAACATC
14994338 ATTATAATTACTGGTCAAACATC
1 ATTATAATTA-TGGTCAAACATC
14994361 ATTATAATTATGGT
1 ATTATAATTATGGT
14994375 AATTATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 7 0.22
23 25 0.78
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (22 bp):
ATTATAATTATGGTCAAACATC
Found at i:15008326 original size:20 final size:20
Alignment explanation
Indices: 15008295--15008423 Score: 107
Period size: 20 Copynumber: 6.5 Consensus size: 20
15008285 GGGTACCGAA
15008295 GTACAAACAGGGGCACGTAT
1 GTACAAACAGGGGCACGTAT
* * *
15008315 GTGCAAATAGGGGCACGTAC
1 GTACAAACAGGGGCACGTAT
* * * *
15008335 GTGCAAACAGGGGTATC-AAA
1 GTACAAACAGGGGCA-CGTAT
* *
15008355 GTACAAATAGGGGCGCGTAT
1 GTACAAACAGGGGCACGTAT
* * * ** *
15008375 ATGCAAACAGGGGTACCAAA
1 GTACAAACAGGGGCACGTAT
15008395 GTACAAACAGGGGCACGTAT
1 GTACAAACAGGGGCACGTAT
15008415 GTACAAACA
1 GTACAAACA
15008424 TTCAACAATT
Statistics
Matches: 80, Mismatches: 27, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
19 1 0.01
20 78 0.98
21 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.29, T:0.15
Consensus pattern (20 bp):
GTACAAACAGGGGCACGTAT
Found at i:15008343 original size:40 final size:39
Alignment explanation
Indices: 15008318--15008423 Score: 149
Period size: 40 Copynumber: 2.7 Consensus size: 39
15008308 CACGTATGTG
*
15008318 CAAATAGGGGCACGTACGTGCAAACAGGGGTATCAAAGTA
1 CAAATAGGGGCACGTATGTGCAAACAGGGGTA-CAAAGTA
* *
15008358 CAAATAGGGGCGCGTATATGCAAACAGGGGTACCAAAGTA
1 CAAATAGGGGCACGTATGTGCAAACAGGGGTA-CAAAGTA
* *
15008398 CAAACAGGGGCACGTATGTACAAACA
1 CAAATAGGGGCACGTATGTGCAAACA
15008424 TTCAACAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.39, C:0.19, G:0.28, T:0.14
Consensus pattern (39 bp):
CAAATAGGGGCACGTATGTGCAAACAGGGGTACAAAGTA
Found at i:15008402 original size:60 final size:60
Alignment explanation
Indices: 15008293--15008407 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
15008283 CAGGGTACCG
* * ** * *
15008293 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGCACGTACGTGCAAACAGGGGTATCA
1 AAGTACAAACAGGGGCACGTATATGCAAACAGGGGCACCAAAGTACAAACAGGGGTATCA
* * *
15008353 AAGTACAAATAGGGGCGCGTATATGCAAACAGGGGTACCAAAGTACAAACAGGGG
1 AAGTACAAACAGGGGCACGTATATGCAAACAGGGGCACCAAAGTACAAACAGGGG
15008408 CACGTATGTA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 46 1.00
ACGTcount: A:0.37, C:0.17, G:0.31, T:0.14
Consensus pattern (60 bp):
AAGTACAAACAGGGGCACGTATATGCAAACAGGGGCACCAAAGTACAAACAGGGGTATCA
Found at i:15014805 original size:46 final size:46
Alignment explanation
Indices: 15014738--15014831 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
15014728 TTCAATTGGG
* *
15014738 TTTATCATCCATCTCAACATAACATATTTTCCATATAGCTCACCAT
1 TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
*
15014784 TTTATCACCCATCTCAACATAACATATTTTACATGTAGCTCACCAT
1 TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
15014830 TT
1 TT
15014832 CAAAGTCTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (46 bp):
TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
Found at i:15015880 original size:18 final size:18
Alignment explanation
Indices: 15015857--15015894 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
15015847 AAAAATCACT
15015857 TAACAA-AATACTTTTAAA
1 TAACAACAATA-TTTTAAA
15015875 TAACAACTAATATTTTAAA
1 TAACAAC-AATATTTTAAA
15015894 T
1 T
15015895 TCATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (18 bp):
TAACAACAATATTTTAAA
Found at i:15018013 original size:24 final size:24
Alignment explanation
Indices: 15017986--15018034 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
15017976 ATTATGAACT
*
15017986 TTTATGCATACCTTCATAAGTTTC
1 TTTATGCATACCCTCATAAGTTTC
* *
15018010 TTTATTCATACCCTCATGAGTTTC
1 TTTATGCATACCCTCATAAGTTTC
15018034 T
1 T
15018035 ACTTATCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.47
Consensus pattern (24 bp):
TTTATGCATACCCTCATAAGTTTC
Found at i:15026251 original size:20 final size:20
Alignment explanation
Indices: 15026226--15026269 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
15026216 TACGTATGTG
*
15026226 CAAACAGGAGTACCAAAGTA
1 CAAACAGAAGTACCAAAGTA
**
15026246 CAAACAGAAGTACTGAAGTA
1 CAAACAGAAGTACCAAAGTA
15026266 CAAA
1 CAAA
15026270 TAGGGGCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.18, G:0.18, T:0.11
Consensus pattern (20 bp):
CAAACAGAAGTACCAAAGTA
Found at i:15026315 original size:40 final size:40
Alignment explanation
Indices: 15026255--15026349 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
15026245 ACAAACAGAA
*
15026255 GTACTGAAGTACAAATAGGGGCA-TATATGTGCAAAT-AGGG
1 GTACCGAAGTACAAATAGGGGCACT-TATGTGC-AATCAGGG
* *
15026295 GTACCGAAGTATAAATAGGGGCACTTATGTGCTATCAGGG
1 GTACCGAAGTACAAATAGGGGCACTTATGTGCAATCAGGG
*
15026335 GTACCGAAGTGCAAA
1 GTACCGAAGTACAAA
15026350 CTAAGAAACC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.04
40 45 0.94
41 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (40 bp):
GTACCGAAGTACAAATAGGGGCACTTATGTGCAATCAGGG
Found at i:15028619 original size:21 final size:21
Alignment explanation
Indices: 15028593--15028638 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
15028583 AGTGTAAATC
15028593 GGGGCACGTATGCGCAATTCA
1 GGGGCACGTATGCGCAATTCA
* *
15028614 GGGGCACGTATGTGTAATTCA
1 GGGGCACGTATGCGCAATTCA
15028635 GGGG
1 GGGG
15028639 ATAATTAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.39, T:0.22
Consensus pattern (21 bp):
GGGGCACGTATGCGCAATTCA
Found at i:15030477 original size:30 final size:30
Alignment explanation
Indices: 15030441--15030501 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
15030431 ATCCTAACAG
*
15030441 ATCGAAAGAACAAAGTGATAGTACTATCTC
1 ATCGAAAGAACAAAATGATAGTACTATCTC
15030471 ATCGAAAGAACAAAATGATAGTACTATCTC
1 ATCGAAAGAACAAAATGATAGTACTATCTC
15030501 A
1 A
15030502 GGCTTCATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (30 bp):
ATCGAAAGAACAAAATGATAGTACTATCTC
Found at i:15041632 original size:16 final size:16
Alignment explanation
Indices: 15041611--15041642 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15041601 ATTTTGTTAC
*
15041611 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
15041627 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
15041643 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:15043726 original size:42 final size:42
Alignment explanation
Indices: 15043646--15043727 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
15043636 CGTTTTCTCT
**
15043646 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
*
15043688 ATGCCATAG-CCTAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGTCC-AACTATGGTCTTACACA-TATGCACATAT
15043728 CACACTGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 2 0.06
42 31 0.89
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:15046541 original size:16 final size:16
Alignment explanation
Indices: 15046520--15046551 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15046510 GTTTTGTTGC
*
15046520 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
15046536 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
15046552 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:15046837 original size:51 final size:51
Alignment explanation
Indices: 15046779--15046969 Score: 212
Period size: 51 Copynumber: 3.8 Consensus size: 51
15046769 CCGGTTCACA
*
15046779 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
* * * *
15046830 TAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGATACACG
* * * * *
15046881 TAGTAGCTTGCACATAGTACTATACATGCGACCTATCA-T-T-CTAGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGA-TACACG
*
15046931 TAGTAGCCTGCACAAAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
15046970 TTCACTTTCA
Statistics
Matches: 114, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
49 5 0.04
50 36 0.32
51 70 0.61
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
Found at i:15046958 original size:101 final size:102
Alignment explanation
Indices: 15046777--15046961 Score: 286
Period size: 101 Copynumber: 1.8 Consensus size: 102
15046767 TACCGGTTCA
* *
15046777 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGCCTGCA
*
15046842 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
66 CAAAGTACTACACACGTGATCGAAGCTATCCGGTACG
* *
15046879 CATAGTAGCTTGCACATAGTACTATACATGCGACCTATCA-T-TCTAG-TACACGTAGTAGCCTG
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATC-AGATACACGTAGTAGCCTG
15046941 CACAAAGTACTACACACGTGA
64 CACAAAGTACTACACACGTGA
15046962 CCATCACTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 38 0.50
102 34 0.45
103 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGCCTGCA
CAAAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:15046985 original size:101 final size:102
Alignment explanation
Indices: 15046769--15046961 Score: 275
Period size: 102 Copynumber: 1.9 Consensus size: 102
15046759 ATTAATGATA
* *
15046769 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGT
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGT
* *
15046834 AGCCTGCACATAGTACTACACACGTGATCGAAGCTAT
66 AGCCTGCACAAAGTACTACACACGTGATCCAAGCTAT
* * * *
15046871 CCGGTACGCATAGTAGCTTGCACATAGTACTATACATGCGACCTATCA-T-TCTAG-TACACGTA
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATC-AGATACACGTA
15046933 GTAGCCTGCACAAAGTACTACACACGTGA
64 GTAGCCTGCACAAAGTACTACACACGTGA
15046962 CCATCACTTT
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
101 38 0.46
102 40 0.49
103 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (102 bp):
CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGT
AGCCTGCACAAAGTACTACACACGTGATCCAAGCTAT
Found at i:15047213 original size:16 final size:16
Alignment explanation
Indices: 15047188--15047218 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15047178 ATCTAATCCA
15047188 AAAATCACATTTTTGT
1 AAAATCACATTTTTGT
*
15047204 AAAATTACATTTTTG
1 AAAATCACATTTTTG
15047219 CCCCTAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (16 bp):
AAAATCACATTTTTGT
Found at i:15050595 original size:3 final size:3
Alignment explanation
Indices: 15050587--15050613 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15050577 CAAGAACAAA
15050587 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
15050614 GAAAAGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15050731 original size:4 final size:4
Alignment explanation
Indices: 15050722--15050751 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
15050712 TGGTCATGTG
15050722 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
15050752 CATCAAGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:15051572 original size:22 final size:22
Alignment explanation
Indices: 15051547--15051603 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 22
15051537 TACAAATTAA
15051547 ATCTCTAAGATTACAAAATCAT
1 ATCTCTAAGATTACAAAATCAT
* *
15051569 ATCTTCTAAGATTGC-ATATCAT
1 ATC-TCTAAGATTACAAAATCAT
15051591 A--TCTAAGATTACA
1 ATCTCTAAGATTACA
15051604 TATCCTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 10 0.33
22 10 0.33
23 10 0.33
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (22 bp):
ATCTCTAAGATTACAAAATCAT
Found at i:15051580 original size:23 final size:22
Alignment explanation
Indices: 15051537--15051594 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
15051527 AAAGGATATC
* *
15051537 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
15051558 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
15051581 TGCATATCATATCT
1 TACAAATCATATCT
15051595 AAGATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:15052155 original size:41 final size:42
Alignment explanation
Indices: 15052024--15052219 Score: 118
Period size: 41 Copynumber: 4.6 Consensus size: 42
15052014 TAGTCTGCTT
* * * * *
15052024 CACTGCAACTTTAGGGAAATAAGA-CTTGCTTTCTCAGTCTGCTC
1 CACTGCAAC-TTAGGGAGATAAGATC-TACTGT-TCAATCCGCTC
* * * **
15052068 CGCTGCAACCTTAGGGAGATAAGA-C--CTGATACGATCTACTC
1 CACTGCAA-CTTAGGGAGATAAGATCTACTG-TTCAATCCGCTC
* * *
15052109 TACTGCAACTTCAGAGAGATAAGATCTA-T-TTTAATCCGCTC
1 CACTGCAACTT-AGGGAGATAAGATCTACTGTTCAATCCGCTC
* *
15052150 CACTGCAACTTTAGGGAGATAGGAT-TACTGGCTTCAATCTGCTC
1 CACTGCAAC-TTAGGGAGATAAGATCTACT-G-TTCAATCCGCTC
*
15052194 CACTGCAACTTAGGGAGATAAAATCT
1 CACTGCAACTTAGGGAGATAAGATCT
15052220 GTAATTTTCA
Statistics
Matches: 118, Mismatches: 22, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
40 5 0.04
41 53 0.45
42 4 0.03
43 14 0.12
44 41 0.35
45 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
CACTGCAACTTAGGGAGATAAGATCTACTGTTCAATCCGCTC
Found at i:15052406 original size:44 final size:44
Alignment explanation
Indices: 15052323--15052440 Score: 141
Period size: 44 Copynumber: 2.7 Consensus size: 44
15052313 TTTCGATTTG
* * * * *
15052323 CTCCACTGCTGCTTAGGGAGATAAGA-TCTGTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGAGAGATAGGATTC-ATAATCTTCAACCTA
15052367 CTCCACTGCTGCTCAGAGAGATAGGATTCATAATCTTCAACCTA
1 CTCCACTGCTGCTCAGAGAGATAGGATTCATAATCTTCAACCTA
* *
15052411 TTCCACTGCTGAC-CAGTGAGATAGGATTCA
1 CTCCACTGCTG-CTCAGAGAGATAGGATTCA
15052441 CCTATTCCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 62 0.95
45 3 0.05
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
CTCCACTGCTGCTCAGAGAGATAGGATTCATAATCTTCAACCTA
Found at i:15052449 original size:34 final size:34
Alignment explanation
Indices: 15052406--15052626 Score: 208
Period size: 34 Copynumber: 5.9 Consensus size: 34
15052396 ATAATCTTCA
*
15052406 ACCTATTCCACTGCTGACCAGTGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
* *
15052440 ACCTATTCCACTGTTGACTAGGGAGATAGGACTTACAATCTTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGG-------A--TTC
15052483 AACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTC
1 -ACCTATTCCACTGCTGACCAGGGAGATAGG-------A--TTC
* *
15052527 AACCTATTCCACTGCTAACCAGGGAGATCGGATTC
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
15052562 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
15052596 ACCTATTCCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA
15052627 CTTACAATCT
Statistics
Matches: 167, Mismatches: 10, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
34 89 0.53
35 3 0.02
37 1 0.01
41 1 0.01
43 3 0.02
44 70 0.42
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:15052491 original size:78 final size:77
Alignment explanation
Indices: 15052362--15052675 Score: 324
Period size: 78 Copynumber: 4.0 Consensus size: 77
15052352 GTAATTTTCA
* * *
15052362 ACCTACTCCACTGCTG-CTCAGAGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACT-AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
15052426 GTGAGATAGGATTC
64 GGGAGATAGGATTC
*
15052440 ACCTATTCCACTGTTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCAG
15052505 GGAGATAGGACTTACAATCTTC
65 GGAGATAGG-------A--TTC
* * *
15052527 AACCTATTCCACTGCTAACCAGGGAGATCGG------A--TTC-ACCTATTCCACTGCTGACCAG
1 -ACCTATTCCACTGCTGACTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAG
15052583 GGAGATAGGATTC
65 GGAGATAGGATTC
* * *
15052596 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAATCTCTTCCACTGCTAACCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCAG
*
15052661 GGAGATAGGACTC
65 GGAGATAGGATTC
15052674 AC
1 AC
15052676 AATCTTCAAC
Statistics
Matches: 198, Mismatches: 16, Indels: 44
0.77 0.06 0.17
Matches are distributed among these distances:
68 27 0.14
69 3 0.02
71 1 0.01
75 1 0.01
77 3 0.02
78 125 0.63
79 7 0.04
81 1 0.01
85 1 0.01
87 3 0.02
88 26 0.13
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (77 bp):
ACCTATTCCACTGCTGACTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAGG
GAGATAGGATTC
Found at i:15052507 original size:44 final size:44
Alignment explanation
Indices: 15052440--15052711 Score: 323
Period size: 44 Copynumber: 6.6 Consensus size: 44
15052430 GATAGGATTC
* *
15052440 ACCTATTCCACTGTTGACTAGGGAGATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
15052484 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* *
15052528 ACCTATTCCACTGCTAACCAGGGAGATCGG-------A--TTC-
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
15052562 ACCTATTCCACTGCTGACCAGGGAGATAGG-------A--TTC-
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
15052596 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* * * *
15052640 ATCTCTTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
15052684 ACCTATTCCACTGCTGACCAGGGAGATA
1 ACCTATTCCACTGCTGACCAGGGAGATA
15052712 AAGTTTTGTG
Statistics
Matches: 203, Mismatches: 15, Indels: 20
0.85 0.06 0.08
Matches are distributed among these distances:
34 61 0.30
35 3 0.01
37 1 0.00
41 1 0.00
43 3 0.01
44 134 0.66
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (44 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
Found at i:15052690 original size:156 final size:156
Alignment explanation
Indices: 15052406--15052710 Score: 547
Period size: 156 Copynumber: 2.0 Consensus size: 156
15052396 ATAATCTTCA
* *
15052406 ACCTATTCCACTGCTGACCAGTGAGATAGGATTCACCTATTCCACTGTTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTGACTAGGGAGATAGGA
* *
15052471 CTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTC
66 CTTACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTC
15052536 CACTGCTAACCAGGGAGATCGGATTC
131 CACTGCTAACCAGGGAGATCGGATTC
15052562 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTGACTAGGGAGATAGGA
* *
15052627 CTTACAATCTTCAATCTCTTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTC
66 CTTACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTC
*
15052692 CACTGCTGACCAGGGAGAT
131 CACTGCTAACCAGGGAGAT
15052711 AAAGTTTTGT
Statistics
Matches: 142, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 142 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (156 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTGACTAGGGAGATAGGA
CTTACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTC
CACTGCTAACCAGGGAGATCGGATTC
Found at i:15053969 original size:6 final size:6
Alignment explanation
Indices: 15053953--15053993 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
15053943 TTGGCCTCTC
* *
15053953 CTTTGT CTTTTT -TTTTT CTTTTT CCTTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
15053994 TTATCACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.80
Consensus pattern (6 bp):
CTTTTT
Found at i:15059002 original size:22 final size:22
Alignment explanation
Indices: 15058954--15059007 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
15058944 AAAAATAAAA
*
15058954 AATATATAAATATACATATTTT
1 AATATATAAATATACATATTGT
* *
15058976 AATATGTAAATATATATATATGT
1 AATATATAAATATACATAT-TGT
15058999 -ATATA-AAAT
1 AATATATAAAT
15059008 TATGAAACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 4 0.15
22 21 0.78
23 2 0.07
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (22 bp):
AATATATAAATATACATATTGT
Found at i:15059658 original size:23 final size:22
Alignment explanation
Indices: 15059615--15059672 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
15059605 AAAGGATATC
* *
15059615 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
15059636 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
15059659 TGCATATCATATCT
1 TACAAATCATATCT
15059673 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:15074886 original size:20 final size:20
Alignment explanation
Indices: 15074861--15074926 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
15074851 CACATTAATG
15074861 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
15074881 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * *
15074901 CTCTTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTCGGTA
15074921 CCCCTG
1 CCCCTG
15074927 AATGCACATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.09, C:0.29, G:0.20, T:0.42
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:15075063 original size:40 final size:40
Alignment explanation
Indices: 15074865--15075054 Score: 240
Period size: 40 Copynumber: 4.8 Consensus size: 40
15074855 TTAATGCCCC
** * * *
15074865 TGTTTGTACTTCGGTACCCCTGTTTGTAC-TTCGGTACTCT
1 TGTTTGTACTTCGGTACCCCTGAATGCACATAC-GTGCTCT
* *
15074905 TGTTTGTACTTTGGTACCCCTGAATGCACATACGTGCTAT
1 TGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCTCT
*
15074945 TGTTTGTACTTCGGTACCTCTGAATGCACATACGTGCTCT
1 TGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCTCT
* * * *
15074985 TGCTTGTACTTCGATACCCCTG-ATGCACATGCATGCTCT
1 TGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCTCT
*
15075024 TGTTTGTACTTCGGTACCCCTAAATGCACAT
1 TGTTTGTACTTCGGTACCCCTGAATGCACAT
15075055 TTTTGCTCTG
Statistics
Matches: 130, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 34 0.26
40 94 0.72
41 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (40 bp):
TGTTTGTACTTCGGTACCCCTGAATGCACATACGTGCTCT
Found at i:15076095 original size:17 final size:18
Alignment explanation
Indices: 15076073--15076109 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
15076063 CCGTGTGACC
15076073 CATG-TTTCTCAAATTTT
1 CATGTTTTCTCAAATTTT
15076090 CATGTTTTTCTCAAATTTT
1 CATG-TTTTCTCAAATTTT
15076109 C
1 C
15076110 TATTTTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.22, C:0.19, G:0.05, T:0.54
Consensus pattern (18 bp):
CATGTTTTCTCAAATTTT
Found at i:15076122 original size:19 final size:19
Alignment explanation
Indices: 15076079--15076122 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
15076069 GACCCATGTT
*
15076079 TCTCAAATTTTCATGTTTT
1 TCTCAAATTTTCATGTTTA
15076098 TCTCAAATTTTCTAT-TTTA
1 TCTCAAATTTTC-ATGTTTA
*
15076117 TGTCAA
1 TCTCAA
15076123 TTAGATCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 20 0.91
20 2 0.09
ACGTcount: A:0.25, C:0.16, G:0.05, T:0.55
Consensus pattern (19 bp):
TCTCAAATTTTCATGTTTA
Found at i:15082547 original size:40 final size:40
Alignment explanation
Indices: 15082431--15082547 Score: 126
Period size: 40 Copynumber: 2.9 Consensus size: 40
15082421 AGTACCCCGA
* * * *
15082431 TTTGTACTTTGGTAGCCCTGAATGCATAAACATGCTCCTG
1 TTTGTACTTCGGTACCCCTGAATGCACATACATGCTCCTG
* * * * *
15082471 TTTATTCTTCGGTACCCCTGAATACACATGCGTGCTCCTG
1 TTTGTACTTCGGTACCCCTGAATGCACATACATGCTCCTG
* * *
15082511 TTTGTACTTCGGTATCCTTGAATGCACATTCATGCTC
1 TTTGTACTTCGGTACCCCTGAATGCACATACATGCTC
15082548 TAAATGCACT
Statistics
Matches: 61, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.37
Consensus pattern (40 bp):
TTTGTACTTCGGTACCCCTGAATGCACATACATGCTCCTG
Found at i:15093463 original size:83 final size:85
Alignment explanation
Indices: 15093308--15093471 Score: 287
Period size: 83 Copynumber: 1.9 Consensus size: 85
15093298 TACATATACA
*
15093308 TATATACATATATTTTTTTATATGATACTATCTATTGAGATAAGTGTATATTTCTATTGCATGAT
1 TATATACATATA-TTTTTTATATGATACTATCTATTGAAATAAGTGTATATTTCTATTGCATGAT
15093373 TCAATTACCACATGATAAGTG
65 TCAATTACCACATGATAAGTG
15093394 TATATACAT-TA-TTTTTATATGATACTATCTATTGAAATAAGTGTATATTTCTATTGCATGATT
1 TATATACATATATTTTTTATATGATACTATCTATTGAAATAAGTGTATATTTCTATTGCATGATT
*
15093457 CGATTACCACATGAT
66 CAATTACCACATGAT
15093472 GATAATGATT
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
83 65 0.86
85 2 0.03
86 9 0.12
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.45
Consensus pattern (85 bp):
TATATACATATATTTTTTATATGATACTATCTATTGAAATAAGTGTATATTTCTATTGCATGATT
CAATTACCACATGATAAGTG
Found at i:15096383 original size:6 final size:6
Alignment explanation
Indices: 15096366--15096408 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
15096356 TTCAAAAAGA
* * * *
15096366 TCATTT CCATTT TTATTT TCATTT TCATTT CCATTT CCATTT T
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
15096409 TGGAAACCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.63
Consensus pattern (6 bp):
TCATTT
Found at i:15096388 original size:12 final size:12
Alignment explanation
Indices: 15096366--15096407 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
15096356 TTCAAAAAGA
15096366 TCATTTCCATTT
1 TCATTTCCATTT
* *
15096378 TTATTTTCATTT
1 TCATTTCCATTT
15096390 TCATTTCCATTT
1 TCATTTCCATTT
*
15096402 CCATTT
1 TCATTT
15096408 TTGGAAACCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:15105363 original size:18 final size:16
Alignment explanation
Indices: 15105342--15105385 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
15105332 ACATTTGCTC
*
15105342 TTTCTTTTTTCCTTTTTT
1 TTTCTTTTTT-C-TATTT
*
15105360 TTTCTTTTCTCTATTT
1 TTTCTTTTTTCTATTT
15105376 TTTCTTTTTT
1 TTTCTTTTTT
15105386 ATTCGAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 13 0.57
17 1 0.04
18 9 0.39
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTCTTTTTTCTATTT
Found at i:15108316 original size:15 final size:16
Alignment explanation
Indices: 15108289--15108318 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15108279 GATAATAATT
15108289 AATATATATTATATAA
1 AATATATATTATATAA
15108305 AATATA-ATTATATA
1 AATATATATTATATA
15108319 TTAGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:15110906 original size:20 final size:20
Alignment explanation
Indices: 15110881--15110921 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
15110871 TTGTAAGGGA
*
15110881 TTGCACTTCGGTACCTTTGT
1 TTGCACTTCAGTACCTTTGT
*
15110901 TTGCACTTCAGTGCCTTTGT
1 TTGCACTTCAGTACCTTTGT
15110921 T
1 T
15110922 AGCATTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.24, G:0.20, T:0.46
Consensus pattern (20 bp):
TTGCACTTCAGTACCTTTGT
Found at i:15111636 original size:21 final size:21
Alignment explanation
Indices: 15111610--15111656 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
15111600 GTAATAATGA
15111610 TCATGTTTGATTTACCTTCGG
1 TCATGTTTGATTTACCTTCGG
* *
15111631 TCATGTTTGATTTGCCTTTGG
1 TCATGTTTGATTTACCTTCGG
15111652 T-ATGT
1 TCATGT
15111657 GGTGGTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.13, C:0.15, G:0.21, T:0.51
Consensus pattern (21 bp):
TCATGTTTGATTTACCTTCGG
Found at i:15114088 original size:41 final size:42
Alignment explanation
Indices: 15114019--15114097 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 42
15114009 CTGATAATTG
* * *
15114019 GCCCGTGTGACTCCACACAGTCGAGCACATGCCTGTGTGCTT
1 GCCCGTGTGACCCCACACAGCCGAGCACATGCCCGTGTGCTT
*
15114061 GCCCGTGTG-CCCCACACAGCCTAGCACATGCCCGTGT
1 GCCCGTGTGACCCCACACAGCCGAGCACATGCCCGTGT
15114098 CACTTCTCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 24 0.73
42 9 0.27
ACGTcount: A:0.16, C:0.38, G:0.25, T:0.20
Consensus pattern (42 bp):
GCCCGTGTGACCCCACACAGCCGAGCACATGCCCGTGTGCTT
Found at i:15116138 original size:28 final size:27
Alignment explanation
Indices: 15116084--15116136 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
15116074 ACCAATGAAC
*
15116084 CGGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGGAATCAGCACATAGCAACCCCT
15116111 CGGGGGAATCAGCACATAGCAACCCC
1 CGGGGGAATCAGCACATAGCAACCCC
15116137 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.34, G:0.26, T:0.11
Consensus pattern (27 bp):
CGGGGGAATCAGCACATAGCAACCCCT
Found at i:15116576 original size:29 final size:29
Alignment explanation
Indices: 15116543--15116606 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
15116533 TAATCCACCA
15116543 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
15116572 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
15116602 CCCAA
1 CCCAA
15116607 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:15116580 original size:30 final size:30
Alignment explanation
Indices: 15116550--15116606 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15116540 CCACCCAACT
15116550 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
15116579 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
15116607 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:15123503 original size:26 final size:26
Alignment explanation
Indices: 15123467--15123518 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15123457 CACCACTGAA
* *
15123467 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
15123493 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
15123519 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:15123592 original size:70 final size:71
Alignment explanation
Indices: 15123479--15123628 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
15123469 GGGGAATCAT
* *
15123479 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
15123543 ATATCG
66 ATATCG
***
15123549 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
15123614 ATATCG
66 ATATCG
15123620 CACTTAGCA
1 CACTTAGCA
15123629 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
ATATCG
Found at i:15123670 original size:103 final size:103
Alignment explanation
Indices: 15123548--15123769 Score: 374
Period size: 103 Copynumber: 2.2 Consensus size: 103
15123538 AATGGATATC
15123548 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
15123613 GAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
15123651 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
15123716 GATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
15123754 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
15123770 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 111 0.99
104 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:15123671 original size:26 final size:26
Alignment explanation
Indices: 15123641--15123691 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15123631 ACCAATGAAC
*
15123641 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
15123667 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
15123692 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:15124131 original size:29 final size:29
Alignment explanation
Indices: 15124098--15124161 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
15124088 TAATCCACCA
15124098 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
15124127 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
15124157 CCCAA
1 CCCAA
15124162 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:15124135 original size:30 final size:30
Alignment explanation
Indices: 15124105--15124161 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15124095 CCACCCAACT
15124105 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
15124134 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
15124162 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:15139030 original size:171 final size:171
Alignment explanation
Indices: 15138745--15139078 Score: 596
Period size: 171 Copynumber: 2.0 Consensus size: 171
15138735 GCTCTTTTTC
15138745 AAGAGGGGAAATCGACAAGGGAAGAATGGAGTTGAAAGGCAACTAGAAGGGAGAAAGAGAGAAAA
1 AAGAGGGGAAATCGACAAGGGAAGAATGGAGTTGAAAGGCAACTAGAAGGGAGAAAGAGAGAAAA
* * * **
15138810 TGTGAGAGAGAGATGTGTAAAGTGAGGGATGAGAAATAAGGGAGTGAAGGGGGATTTTTATGGGT
66 TGTGAGAGAGAGATATGTAAAGTGAAGGATGAGAAATAAGGAAGTGAAGGGGGATTTTTACAGGT
15138875 GGAGATGGCTGCTAAAAGTAGCAGCCAATCCCCTCTTGAAA
131 GGAGATGGCTGCTAAAAGTAGCAGCCAATCCCCTCTTGAAA
*
15138916 AAGAGGGGAAATCGACAAGGGAAGAATGGAGTTGAAAGGCAATTAGAAGGGAGAAAGAGAGAAAA
1 AAGAGGGGAAATCGACAAGGGAAGAATGGAGTTGAAAGGCAACTAGAAGGGAGAAAGAGAGAAAA
*
15138981 TGTGAGAGAGAGATATGTAAAGTGAAGGATGAGAAATAAGGAAGTGAAGGGGGCTTTTTACAGGT
66 TGTGAGAGAGAGATATGTAAAGTGAAGGATGAGAAATAAGGAAGTGAAGGGGGATTTTTACAGGT
*
15139046 GGAGATGGCTTCTAAAAGTAGCAGCCAATCCCC
131 GGAGATGGCTGCTAAAAGTAGCAGCCAATCCCC
15139079 CTTCCTTTGG
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
171 155 1.00
ACGTcount: A:0.40, C:0.08, G:0.35, T:0.17
Consensus pattern (171 bp):
AAGAGGGGAAATCGACAAGGGAAGAATGGAGTTGAAAGGCAACTAGAAGGGAGAAAGAGAGAAAA
TGTGAGAGAGAGATATGTAAAGTGAAGGATGAGAAATAAGGAAGTGAAGGGGGATTTTTACAGGT
GGAGATGGCTGCTAAAAGTAGCAGCCAATCCCCTCTTGAAA
Done.