Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 55 of 216
Found at i:16209293 original size:28 final size:28
Alignment explanation
Indices: 16209262--16209317 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
16209252 GTTTGTATTT
*
16209262 TATTATAATAA-GTTTATAATATAATATA
1 TATTATAATAACCTTTATAA-ATAATATA
*
16209290 TATTATTATAACCTTTATAAATAATATA
1 TATTATAATAACCTTTATAAATAATATA
16209318 AAAACTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (28 bp):
TATTATAATAACCTTTATAAATAATATA
Found at i:16215260 original size:18 final size:17
Alignment explanation
Indices: 16215237--16215279 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
16215227 TTTTTTTAAA
16215237 TATAAATTTTGGAAATTT
1 TATAAATTTT-GAAATTT
*
16215255 TATAAATATTTTAAATTT
1 TATAAAT-TTTGAAATTT
16215273 TA-AAATT
1 TATAAATT
16215280 ATTTTGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 4 0.17
18 15 0.65
19 3 0.13
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TATAAATTTTGAAATTT
Found at i:16215282 original size:18 final size:18
Alignment explanation
Indices: 16215249--16215289 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
16215239 TAAATTTTGG
16215249 AAATTTTATAAATATTTT
1 AAATTTTATAAATATTTT
16215267 AAATTTTA-AAATTATTTT
1 AAATTTTATAAA-TATTTT
*
16215285 GAATT
1 AAATT
16215290 ATTTTGTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
AAATTTTATAAATATTTT
Found at i:16215384 original size:9 final size:9
Alignment explanation
Indices: 16215370--16215403 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
16215360 ATACCAATAT
16215370 GTTATTTGA
1 GTTATTTGA
16215379 GTTATTTGA
1 GTTATTTGA
* *
16215388 ATTATTCGA
1 GTTATTTGA
16215397 GTTATTT
1 GTTATTT
16215404 AAATTGTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.56
Consensus pattern (9 bp):
GTTATTTGA
Found at i:16215398 original size:18 final size:18
Alignment explanation
Indices: 16215371--16215408 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
16215361 TACCAATATG
* *
16215371 TTATTTGAGTTATTTGAA
1 TTATTCGAGTTATTTAAA
16215389 TTATTCGAGTTATTTAAA
1 TTATTCGAGTTATTTAAA
16215407 TT
1 TT
16215409 GTAAAATTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.13, T:0.55
Consensus pattern (18 bp):
TTATTCGAGTTATTTAAA
Found at i:16218537 original size:17 final size:18
Alignment explanation
Indices: 16218515--16218555 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
16218505 ATGTATAAGT
16218515 ATGTATAT-TAATTA-AAA
1 ATGTATATGT-ATTATAAA
*
16218532 ATGTATGTGTATTATAAA
1 ATGTATATGTATTATAAA
16218550 ATGTAT
1 ATGTAT
16218556 GCATGTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (18 bp):
ATGTATATGTATTATAAA
Found at i:16218537 original size:21 final size:18
Alignment explanation
Indices: 16218513--16218556 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
16218503 ACATGTATAA
16218513 GTATGTATATTAATTAAAAAT
1 GTATGTATATT-A-T-AAAAT
*
16218534 GTATGTGTATTATAAAAT
1 GTATGTATATTATAAAAT
16218552 GTATG
1 GTATG
16218557 CATGTATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 1 0.05
21 10 0.45
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (18 bp):
GTATGTATATTATAAAAT
Found at i:16219591 original size:13 final size:13
Alignment explanation
Indices: 16219573--16219602 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
16219563 TCTATTGTTT
*
16219573 TTGTTTGTTTCTG
1 TTGTTTGCTTCTG
16219586 TTGTTTGCTTCTG
1 TTGTTTGCTTCTG
16219599 TTGT
1 TTGT
16219603 CTTTTAGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.10, G:0.23, T:0.67
Consensus pattern (13 bp):
TTGTTTGCTTCTG
Found at i:16220394 original size:40 final size:41
Alignment explanation
Indices: 16220349--16220541 Score: 131
Period size: 40 Copynumber: 4.6 Consensus size: 41
16220339 TTGTCTGCTG
*
16220349 CACTACTGCTTAGAGAGATAAGACTT-GATGTGATCTACTC
1 CACTACTGCTTAGGGAGATAAGACTTGGATGTGATCTACTC
* * * **
16220389 CACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTC
1 CACTACTGCTTAGGGAGATAAGA-CT-TGGATGTGATCTACTC
* ** * * * **
16220432 CACTGCAACTTCAGGGAGATAGGA-TTGGTTTCTTTTTCTGTATGCTC
1 CACTACTGCTT-AGGGAGATAAGACTTGG-AT-GTGATC--TA--CTC
* *
16220479 CACTACTGCTGAGGGAGATAAGACTT-GATGCGATCTACTC
1 CACTACTGCTTAGGGAGATAAGACTTGGATGTGATCTACTC
*
16220519 CACTACTGCTTAGAGAGATAAGA
1 CACTACTGCTTAGGGAGATAAGA
16220542 TCTGTGGTTT
Statistics
Matches: 116, Mismatches: 26, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
40 46 0.40
41 5 0.04
42 6 0.05
43 21 0.18
44 13 0.11
45 1 0.01
46 12 0.10
47 12 0.10
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (41 bp):
CACTACTGCTTAGGGAGATAAGACTTGGATGTGATCTACTC
Found at i:16220451 original size:44 final size:44
Alignment explanation
Indices: 16220386--16220586 Score: 112
Period size: 43 Copynumber: 4.6 Consensus size: 44
16220376 ATGTGATCTA
**
16220386 CTCCACTACTGCTT-AGGGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTACAACTTCAGGGAGATAAGATCTGTGGTTTTAATCCG
* * * ** *
16220429 CTCCACTGCAACTTCAGGGAGATAGGAT-TG-GTTTCTTTTTCTGTATG
1 CTCCACTACAACTTCAGGGAGATAAGATCTGTGGTT-TTAATC----CG
** * * *** **
16220476 CTCCACTACTGC-TGAGGGAGATAAGA-CT-T-GATGCGATCTA
1 CTCCACTACAACTTCAGGGAGATAAGATCTGTGGTTTTAATCCG
** *
16220516 CTCCACTACTGCTT-AGAGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTACAACTTCAGGGAGATAAGATCTGTGGTTTTAATCCG
*
16220559 CTCCACTGCAACTTCAGGGAGATAAGAT
1 CTCCACTACAACTTCAGGGAGATAAGAT
16220587 TGATTTCTTT
Statistics
Matches: 114, Mismatches: 31, Indels: 25
0.67 0.18 0.15
Matches are distributed among these distances:
40 24 0.21
41 3 0.03
42 4 0.04
43 33 0.29
44 26 0.23
45 1 0.01
46 13 0.11
47 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (44 bp):
CTCCACTACAACTTCAGGGAGATAAGATCTGTGGTTTTAATCCG
Found at i:16220537 original size:130 final size:129
Alignment explanation
Indices: 16220289--16220596 Score: 512
Period size: 130 Copynumber: 2.4 Consensus size: 129
16220279 ATATGATTCA
* * *
16220289 TGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTC--TTTTGTCTGCTGCAC
1 TGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTTTGTATGCTCCAC
* * *
16220352 TACTGCTTAGAGAGATAAGACTTGATGTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTG
66 TACTGCTGAGAGAGATAAGACTTGATGCGATCTACTCCACTACTGCTTAGAGAGATAAGATCTG
16220416 TGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTTCTGTATGCTCCA
1 TGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTT-TGTATGCTCCA
*
16220481 CTACTGCTGAGGGAGATAAGACTTGATGCGATCTACTCCACTACTGCTTAGAGAGATAAGATCTG
65 CTACTGCTGAGAGAGATAAGACTTGATGCGATCTACTCCACTACTGCTTAGAGAGATAAGATCTG
* *
16220546 TGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGATTTCTTT
1 TGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTT
16220597 CAAATTGACT
Statistics
Matches: 169, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
127 47 0.28
129 3 0.02
130 119 0.70
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (129 bp):
TGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTTTGTATGCTCCAC
TACTGCTGAGAGAGATAAGACTTGATGCGATCTACTCCACTACTGCTTAGAGAGATAAGATCTG
Found at i:16220685 original size:50 final size:50
Alignment explanation
Indices: 16220617--16220796 Score: 134
Period size: 50 Copynumber: 3.6 Consensus size: 50
16220607 GCAATGTCGG
* *
16220617 GGAA-CAAGATTCATCGTTGTAGCTTCAATATGTTCCACTGCACCGCC-A
1 GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCGA
* * ** * ** * ** *
16220665 GGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTCGA
1 -GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCGA
* * **
16220716 GGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCG-CTT
1 GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCGA
* * *
16220765 GG-AGATAAGATTCACTGTTGTAGCTTTAATCT
1 GGAAG-CAAGATTCACCGTTGTAGCTTCAATCT
16220797 TTTTAACTGC
Statistics
Matches: 97, Mismatches: 31, Indels: 6
0.72 0.23 0.04
Matches are distributed among these distances:
48 2 0.02
49 30 0.31
50 64 0.66
51 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (50 bp):
GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCGA
Found at i:16220808 original size:99 final size:98
Alignment explanation
Indices: 16220604--16220877 Score: 309
Period size: 99 Copynumber: 2.8 Consensus size: 98
16220594 TTTCAAATTG
* *
16220604 ACTGCAATGTCGGGGAA-CAAGATTCATCGTTGTAGCTTCAATATGTTCCACTGCACCGCCAGG-
1 ACTGCAATGTC-GGGAAGCAAGATTCATCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAGGA
* *
16220667 GAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTA
65 G-A-TAAGATTCACCGTTGCAGCTTCAATCTTTTTA
* * * * *
16220703 ATTGCAATGTCGAGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCTTGGA
1 ACTGCAATGTCG-GGAAGCAAGATTCATCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAGGA
* * *
16220768 GATAAGATTCACTGTTGTAGCTTTAATCTTTTTA
65 GATAAGATTCACCGTTGCAGCTTCAATCTTTTTA
* * * * * * *
16220802 ACTGCAATATCGGGAAAGCAAGATTCGTTGTTATGGCTTTAATCTGTTCCACTACACCGCCTAGG
1 ACTGCAATGTCGGG-AAGCAAGATTCATCGTTGTAGCTTCAATCTGTTCCACTGCACCG-CTAGG
16220867 AGATAAGATTC
64 AGATAAGATTC
16220878 GTTGTTCTTA
Statistics
Matches: 146, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
98 3 0.02
99 86 0.59
100 56 0.38
101 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (98 bp):
ACTGCAATGTCGGGAAGCAAGATTCATCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAGGAG
ATAAGATTCACCGTTGCAGCTTCAATCTTTTTA
Found at i:16221535 original size:129 final size:129
Alignment explanation
Indices: 16221225--16221690 Score: 763
Period size: 129 Copynumber: 3.6 Consensus size: 129
16221215 TAGGATTATC
* *
16221225 GGCTTCAATCTGCTTCATTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
* * *
16221290 TTAGAGAGACAAGATCTGTAATTT-CCAACCTATTCCACTACTGACCAGGGATATAGGACTTGT
66 TTAGAGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGGCTTGT
*
16221353 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTTCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
* * *
16221418 TTAGAGAGACAAGATCTGTAATTTCCCAACCTATTCTACTGCTGATAAGAGATATAGGGCTTGT
66 TTAGAGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGGCTTGT
* * * *
16221482 GGCTTAAATCTGCTTCCTTACACTTAAAGATAAGAGTCACCGTCTTCGATCTGCTCCGCGACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
* * * *
16221547 TTAGGGAGACAAGATCTATAATTTCCCAACCTATTCCACTGTTGGTCAGGGATATAGGGCTTGT
66 TTAGAGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGGCTTGT
*
16221611 GGCTTAAATCTACTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
1 GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
16221676 TTAGAGAGACAAGAT
66 TTAGAGAGACAAGAT
16221691 ATGCTATCTT
Statistics
Matches: 310, Mismatches: 27, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
128 86 0.28
129 224 0.72
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (129 bp):
GGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGC
TTAGAGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGGCTTGT
Found at i:16222944 original size:14 final size:15
Alignment explanation
Indices: 16222927--16222961 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
16222917 TCATTTTTTA
16222927 TTTTTTA-TTTTCAC
1 TTTTTTATTTTTCAC
16222941 TTTTTTATTTTTCAC
1 TTTTTTATTTTTCAC
16222956 TTTTTT
1 TTTTTT
16222962 TACTCGAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTTATTTTTCAC
Found at i:16223874 original size:29 final size:30
Alignment explanation
Indices: 16223842--16223921 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 30
16223832 TCATTTTGAC
**
16223842 TTTGATTTTAATTTTTCTTTTTTT-TTGTT
1 TTTGATTTTAATTTTGATTTTTTTATTGTT
* *
16223871 TTTGATTTTGATTTTGATTTTTTTGATTTTT
1 TTTGATTTTAATTTTGATTTTTTT-ATTGTT
16223902 TTTGATTTT--TTTT-ATTTTTT
1 TTTGATTTTAATTTTGATTTTTT
16223922 ATTTGAAAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
28 7 0.16
29 25 0.56
31 13 0.29
ACGTcount: A:0.11, C:0.01, G:0.09, T:0.79
Consensus pattern (30 bp):
TTTGATTTTAATTTTGATTTTTTTATTGTT
Found at i:16223874 original size:35 final size:37
Alignment explanation
Indices: 16223827--16223911 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 37
16223817 TTTCCTTCTC
*
16223827 TTTTTTCA-TTTTGACTTTGATTTTAATTTTTCT-TT
1 TTTTTTGATTTTTGACTTTGATTTTAATTTTTCTATT
* * *
16223862 TTTTTTG-TTTTTGATTTTGATTTTGATTTTTTTGATT
1 TTTTTTGATTTTTGACTTTGATTTTAATTTTTCT-ATT
16223899 TTTTTTGATTTTT
1 TTTTTTGATTTTT
16223912 TTTATTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 28 0.67
37 9 0.21
38 5 0.12
ACGTcount: A:0.12, C:0.04, G:0.09, T:0.75
Consensus pattern (37 bp):
TTTTTTGATTTTTGACTTTGATTTTAATTTTTCTATT
Found at i:16223879 original size:12 final size:11
Alignment explanation
Indices: 16223864--16223927 Score: 57
Period size: 10 Copynumber: 6.0 Consensus size: 11
16223854 TTTTCTTTTT
16223864 TTTTGTTTTTGA
1 TTTT-TTTTTGA
*
16223876 TTTTGATTTTGA
1 TTTT-TTTTTGA
16223888 --TTTTTTTGA
1 TTTTTTTTTGA
16223897 -TTTTTTTTGA
1 TTTTTTTTTGA
16223907 -TTTTTTTT-A
1 TTTTTTTTTGA
16223916 TTTTTTATTTGA
1 TTTTTT-TTTGA
16223928 AAGGATCTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
9 7 0.15
10 24 0.52
11 3 0.07
12 12 0.26
ACGTcount: A:0.12, C:0.00, G:0.11, T:0.77
Consensus pattern (11 bp):
TTTTTTTTTGA
Found at i:16223900 original size:6 final size:6
Alignment explanation
Indices: 16223829--16223910 Score: 59
Period size: 6 Copynumber: 14.7 Consensus size: 6
16223819 TCCTTCTCTT
* * * ** * *
16223829 TTTTCA TTTTGA CTTTGA TTTTAA TTTTTC TTTT-T TTTTGT TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
16223876 TTTTGA TTTTGA -TTT-- TTTTGA TTTT-- TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
16223911 TTTTATTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
4 7 0.11
5 7 0.11
6 48 0.77
ACGTcount: A:0.12, C:0.04, G:0.10, T:0.74
Consensus pattern (6 bp):
TTTTGA
Found at i:16223904 original size:19 final size:19
Alignment explanation
Indices: 16223869--16223921 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
16223859 TTTTTTTTTG
16223869 TTTTTGATTTTGATTTTGATT
1 TTTTTGATTTT--TTTTGATT
16223890 TTTTTGATTTTTTTTGATT
1 TTTTTGATTTTTTTTGATT
*
16223909 TTTTTTATTTTTT
1 TTTTTGATTTTTT
16223922 ATTTGAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 20 0.65
21 11 0.35
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.79
Consensus pattern (19 bp):
TTTTTGATTTTTTTTGATT
Found at i:16228221 original size:17 final size:18
Alignment explanation
Indices: 16228199--16228239 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
16228189 ATGTCTAAGT
16228199 ATGTATAT-TAATTA-AAA
1 ATGTATATGT-ATTATAAA
*
16228216 ATGTATGTGTATTATAAA
1 ATGTATATGTATTATAAA
16228234 ATGTAT
1 ATGTAT
16228240 GCATGTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (18 bp):
ATGTATATGTATTATAAA
Found at i:16228221 original size:21 final size:18
Alignment explanation
Indices: 16228197--16228240 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
16228187 ACATGTCTAA
16228197 GTATGTATATTAATTAAAAAT
1 GTATGTATATT-A-T-AAAAT
*
16228218 GTATGTGTATTATAAAAT
1 GTATGTATATTATAAAAT
16228236 GTATG
1 GTATG
16228241 CATGTATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 1 0.05
21 10 0.45
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (18 bp):
GTATGTATATTATAAAAT
Found at i:16228253 original size:6 final size:6
Alignment explanation
Indices: 16228242--16228268 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
16228232 AAATGTATGC
16228242 ATGTAT ATGTAT ATGTAT ATGTAT ATG
1 ATGTAT ATGTAT ATGTAT ATGTAT ATG
16228269 ACAAAATCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (6 bp):
ATGTAT
Found at i:16229030 original size:17 final size:16
Alignment explanation
Indices: 16229006--16229041 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
16228996 AAAATAAAAG
16229006 AAATAAAAAAAAATGA
1 AAATAAAAAAAAATGA
*
16229022 AAATAAAAATATAATGA
1 AAATAAAAA-AAAATGA
16229039 AAA
1 AAA
16229042 CAAGAACCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (16 bp):
AAATAAAAAAAAATGA
Found at i:16229206 original size:13 final size:13
Alignment explanation
Indices: 16229188--16229217 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
16229178 TCTATTGTTT
*
16229188 TTGTTTGTTTCTG
1 TTGTTTGCTTCTG
16229201 TTGTTTGCTTCTG
1 TTGTTTGCTTCTG
16229214 TTGT
1 TTGT
16229218 CTTTTAGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.10, G:0.23, T:0.67
Consensus pattern (13 bp):
TTGTTTGCTTCTG
Found at i:16230347 original size:39 final size:39
Alignment explanation
Indices: 16230251--16230349 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 39
16230241 GTAAAACTAT
* *
16230251 TACTCAAATTCCTCTTGCAAAATCAATTATGTATCCAAA
1 TACTCAAATTCCTCTTGAAAAATCAATTATGTAACCAAA
* *
16230290 TACTC-AACTCCGTTTTGAAAAATCAACTT-TGTAACCAAA
1 TACTCAAATTCC-TCTTGAAAAATCAA-TTATGTAACCAAA
* *
16230329 TACTCAAATTTCACTTGAAAA
1 TACTCAAATTCCTCTTGAAAA
16230350 CCCAAATTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
38 5 0.10
39 38 0.78
40 6 0.12
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.32
Consensus pattern (39 bp):
TACTCAAATTCCTCTTGAAAAATCAATTATGTAACCAAA
Found at i:16230823 original size:39 final size:39
Alignment explanation
Indices: 16230753--16230874 Score: 136
Period size: 39 Copynumber: 3.1 Consensus size: 39
16230743 CTAGAACTAT
* * * *
16230753 TACTCAAATTCATATTGGAAACCCAATTTTGTATCCAAA
1 TACTTAAATTCATATTGGAAACTCAACTTTGTAACCAAA
* *
16230792 TACTTAACTTCATATTGGAAACTCAACTTTGTAACAAAA
1 TACTTAAATTCATATTGGAAACTCAACTTTGTAACCAAA
* * ** * *
16230831 TACTCAAATTCCTCCTGAAAACTCAACTTTATAACCAAA
1 TACTTAAATTCATATTGGAAACTCAACTTTGTAACCAAA
16230870 TACTT
1 TACTT
16230875 TGTAAAAATT
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (39 bp):
TACTTAAATTCATATTGGAAACTCAACTTTGTAACCAAA
Found at i:16234376 original size:37 final size:39
Alignment explanation
Indices: 16234317--16234412 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 39
16234307 CGGATAGATT
* * * *
16234317 CGATGAGGCACCGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
*
16234354 CGATGAGGCACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
16234393 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
16234413 TACTGGAGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
37 20 0.40
38 2 0.04
39 25 0.50
40 3 0.06
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:16234485 original size:8 final size:8
Alignment explanation
Indices: 16234472--16234497 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
16234462 TTAATAGGGT
16234472 AAATAATA
1 AAATAATA
16234480 AAATAATA
1 AAATAATA
16234488 AAATAATA
1 AAATAATA
16234496 AA
1 AA
16234498 CTAAATGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATAATA
Found at i:16239683 original size:17 final size:18
Alignment explanation
Indices: 16239663--16239696 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16239653 AAAGAAGAGA
*
16239663 TAAAAGAAA-AAAAATTT
1 TAAAACAAATAAAAATTT
16239680 TAAAACAAATAAAAATT
1 TAAAACAAATAAAAATT
16239697 GAAACTATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (18 bp):
TAAAACAAATAAAAATTT
Found at i:16240885 original size:30 final size:29
Alignment explanation
Indices: 16240831--16240894 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
16240821 TTATTTCCTA
* *
16240831 AAATATATTATAAATATTATATATAATAAT
1 AAATATATTATAAATATCACATATAA-AAT
*
16240861 AAATATATTTATAAA-ATCACATATAAATT
1 AAATATA-TTATAAATATCACATATAAAAT
16240890 AAATA
1 AAATA
16240895 AGTACTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 7 0.23
30 16 0.53
31 7 0.23
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (29 bp):
AAATATATTATAAATATCACATATAAAAT
Found at i:16242746 original size:27 final size:26
Alignment explanation
Indices: 16242680--16242746 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
16242670 GAGAGTATTT
*
16242680 TAAATTTTATA-TAAGATATAAAACA
1 TAAAATTTATACTAAGATATAAAACA
* * *
16242705 TAAAATTTCAAACTAATATATAAACCA
1 TAAAATTT-ATACTAAGATATAAAACA
*
16242732 TAAACTATTATACTA
1 TAAAAT-TTATACTA
16242747 TTATTTAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 7 0.21
26 2 0.06
27 22 0.67
28 2 0.06
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.34
Consensus pattern (26 bp):
TAAAATTTATACTAAGATATAAAACA
Found at i:16249341 original size:20 final size:20
Alignment explanation
Indices: 16249316--16249358 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
16249306 TAAGACTAAA
* *
16249316 TCAGAAACATATAAAAATTT
1 TCAGAAAAAGATAAAAATTT
*
16249336 TCAGAAAAAGATGAAAATTT
1 TCAGAAAAAGATAAAAATTT
16249356 TCA
1 TCA
16249359 AACTGCAGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.28
Consensus pattern (20 bp):
TCAGAAAAAGATAAAAATTT
Found at i:16254102 original size:37 final size:37
Alignment explanation
Indices: 16254052--16254126 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
16254042 CTGAGTGAGC
16254052 ACAAGTGATCAAAATGGGTATGTAATCACCACTATTA
1 ACAAGTGATCAAAATGGGTATGTAATCACCACTATTA
16254089 ACAAGTGATCAAAATGGGTATGTAATCACCACTATTA
1 ACAAGTGATCAAAATGGGTATGTAATCACCACTATTA
16254126 A
1 A
16254127 ATATTCTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (37 bp):
ACAAGTGATCAAAATGGGTATGTAATCACCACTATTA
Found at i:16255111 original size:30 final size:32
Alignment explanation
Indices: 16255063--16255148 Score: 140
Period size: 30 Copynumber: 2.8 Consensus size: 32
16255053 AAATGCATGG
*
16255063 TTGTGAAATGATAACAAATATCAACTTTAATT
1 TTGTGAAATGATAACAAATACCAACTTTAATT
16255095 TTGTGAAAT-A-AACAAATACCAACTTTAATT
1 TTGTGAAATGATAACAAATACCAACTTTAATT
*
16255125 ATGTGAAATGATAACAAATACCAA
1 TTGTGAAATGATAACAAATACCAA
16255149 GTTGGATGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 27 0.54
31 2 0.04
32 21 0.42
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
TTGTGAAATGATAACAAATACCAACTTTAATT
Found at i:16257545 original size:11 final size:11
Alignment explanation
Indices: 16257493--16257560 Score: 56
Period size: 11 Copynumber: 6.5 Consensus size: 11
16257483 TAAGAATAAT
16257493 AGAGA-ATTTG
1 AGAGATATTTG
*
16257503 AGAGAT-TTCTT
1 AGAGATATT-TG
16257514 AGAG-TGATTTG
1 AGAGAT-ATTTG
16257525 AGA-ATA-TTG
1 AGAGATATTTG
16257534 AGAGATATTTG
1 AGAGATATTTG
*
16257545 AGAGAAATTTG
1 AGAGATATTTG
*
16257556 TGAGA
1 AGAGA
16257561 ATAAAGTAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
9 6 0.13
10 12 0.26
11 27 0.57
12 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.28, T:0.34
Consensus pattern (11 bp):
AGAGATATTTG
Found at i:16257555 original size:31 final size:30
Alignment explanation
Indices: 16257494--16257555 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 30
16257484 AAGAATAATA
* **
16257494 GAGAATTTGAGAGATTTCTTAGAGTGATTT
1 GAGAATTTGAGAGATTTCTGAGAGAAATTT
16257524 GAGAATATTGAGAGATATT-TGAGAGAAATTT
1 GAGAAT-TTGAGAGAT-TTCTGAGAGAAATTT
16257555 G
1 G
16257556 TGAGAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 6 0.22
31 19 0.70
32 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.35
Consensus pattern (30 bp):
GAGAATTTGAGAGATTTCTGAGAGAAATTT
Found at i:16258208 original size:19 final size:20
Alignment explanation
Indices: 16258162--16258234 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
16258152 CAACAAAACT
*
16258162 AAAAGAATCATTAAAAACCCC
1 AAAAAAATCA-TAAAAACCCC
16258183 AAAAAAATC-TAAAAACCCTC
1 AAAAAAATCATAAAAACCC-C
* **
16258203 -ATAAAATCATAAAAAAACC
1 AAAAAAATCATAAAAACCCC
*
16258222 TAAAAAATCATAA
1 AAAAAAATCATAA
16258235 TCTATTTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
19 17 0.39
20 19 0.43
21 8 0.18
ACGTcount: A:0.63, C:0.19, G:0.01, T:0.16
Consensus pattern (20 bp):
AAAAAAATCATAAAAACCCC
Found at i:16258208 original size:20 final size:19
Alignment explanation
Indices: 16258162--16258234 Score: 67
Period size: 19 Copynumber: 3.6 Consensus size: 19
16258152 CAACAAAACT
16258162 AAAAGAATCATTAAAAACCCC
1 AAAA-AATCA-TAAAAACCCC
16258183 AAAAAAATC-TAAAAACCCTC
1 -AAAAAATCATAAAAACCC-C
* * *
16258203 ATAAAATCATAAAAAAACCT
1 AAAAAATCAT-AAAAACCCC
16258223 AAAAAATCATAA
1 AAAAAATCATAA
16258235 TCTATTTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
19 18 0.41
20 11 0.25
21 11 0.25
22 4 0.09
ACGTcount: A:0.63, C:0.19, G:0.01, T:0.16
Consensus pattern (19 bp):
AAAAAATCATAAAAACCCC
Found at i:16258369 original size:19 final size:20
Alignment explanation
Indices: 16258341--16258383 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
16258331 TAGTTTCTTT
*
16258341 TTTTAAGAAA-ATCTTAGAA
1 TTTTAAGAAATATCTAAGAA
* *
16258360 TTTTATGAAATTTCTAAGAA
1 TTTTAAGAAATATCTAAGAA
16258380 TTTT
1 TTTT
16258384 TTGGTCGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTTAAGAAATATCTAAGAA
Found at i:16259135 original size:31 final size:30
Alignment explanation
Indices: 16259099--16259157 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
16259089 TATATATTAT
*
16259099 TTTTTAA-ATCAATACTTTTTACTTATTATCA
1 TTTTTAATAT-AATAC-TTTTAATTATTATCA
*
16259130 TTTTTAATATATTACTTTTAATTATTAT
1 TTTTTAATATAATACTTTTAATTATTAT
16259158 TTCATGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.48
31 11 0.44
32 2 0.08
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (30 bp):
TTTTTAATATAATACTTTTAATTATTATCA
Found at i:16259148 original size:15 final size:15
Alignment explanation
Indices: 16259090--16259156 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 15
16259080 GCACATTATT
*
16259090 ATATATTATTTTTTA
1 ATATATTACTTTTTA
*
16259105 A-ATCAATACTTTTTA
1 ATAT-ATTACTTTTTA
*
16259120 CT-TATTATCATTTTTA
1 ATATATTA-C-TTTTTA
16259136 ATATATTAC-TTTTA
1 ATATATTACTTTTTA
16259150 AT-TATTA
1 ATATATTA
16259157 TTTCATGTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
13 5 0.12
14 12 0.29
15 12 0.29
16 8 0.19
17 5 0.12
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATATTACTTTTTA
Found at i:16259198 original size:16 final size:16
Alignment explanation
Indices: 16259177--16259231 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
16259167 TTCCATTTAT
16259177 ATATTTTTTAAGAATA
1 ATATTTTTTAAGAATA
* *
16259193 ATATTTAATATAA-ATTA
1 ATATTT--TTTAAGAATA
*
16259210 ATATATTTTAAGAATA
1 ATATTTTTTAAGAATA
16259226 ATATTT
1 ATATTT
16259232 AGTATAGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 4 0.13
16 14 0.47
17 8 0.27
18 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (16 bp):
ATATTTTTTAAGAATA
Found at i:16273058 original size:27 final size:27
Alignment explanation
Indices: 16272916--16273180 Score: 232
Period size: 27 Copynumber: 9.8 Consensus size: 27
16272906 CCCTTCGTAA
* * *
16272916 TTCGCCATAAAGCCTTTCCTTTCATACT
1 TTCGCCACAAAGGCTTTTCTTTCATA-T
*
16272944 TT-GCCACAAAGACTTTTCTTTCATGA-
1 TTCGCCACAAAGGCTTTTCTTTCAT-AT
* *
16272970 TTCACCATAAAAGGCTTTTCTTTCATAT
1 TTCGCCA-CAAAGGCTTTTCTTTCATAT
*** *
16272998 TTCATTACAAATGCTTTT-TTTCATAT
1 TTCGCCACAAAGGCTTTTCTTTCATAT
*
16273024 TTCACCACAAAGGCTTTTCTTTCATGA-
1 TTCGCCACAAAGGCTTTTCTTTCAT-AT
* * * *
16273051 TTCGCCACAAATGCTTTTATCTCATAG
1 TTCGCCACAAAGGCTTTTCTTTCATAT
* * *
16273078 TTCGTCACAAATGCTTTTCTCTCATAT
1 TTCGCCACAAAGGCTTTTCTTTCATAT
*** **
16273105 TTCGCCACAAAATTTTTTCTCCCATAT
1 TTCGCCACAAAGGCTTTTCTTTCATAT
* *
16273132 TTCTCCACAAAGGCTTTCCTTTCATAT
1 TTCGCCACAAAGGCTTTTCTTTCATAT
*
16273159 TTTGCCACAAAGGCTTTTCTTT
1 TTCGCCACAAAGGCTTTTCTTT
16273181 TTTGACGTGT
Statistics
Matches: 195, Mismatches: 35, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
26 26 0.13
27 144 0.74
28 25 0.13
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (27 bp):
TTCGCCACAAAGGCTTTTCTTTCATAT
Found at i:16279791 original size:9 final size:9
Alignment explanation
Indices: 16279777--16279802 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
16279767 TAAAAACACA
16279777 AACTAAAAT
1 AACTAAAAT
16279786 AACTAAAAT
1 AACTAAAAT
16279795 AACTAAAA
1 AACTAAAA
16279803 ATTAATGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:16282841 original size:15 final size:15
Alignment explanation
Indices: 16282817--16282850 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
16282807 GGGAAGGGAA
* *
16282817 TGATCCTGGTCTGAG
1 TGATCATGGTCTCAG
16282832 TGATCATGGTCTCAG
1 TGATCATGGTCTCAG
16282847 TGAT
1 TGAT
16282851 GATCCTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (15 bp):
TGATCATGGTCTCAG
Found at i:16283460 original size:56 final size:56
Alignment explanation
Indices: 16283381--16283487 Score: 196
Period size: 56 Copynumber: 1.9 Consensus size: 56
16283371 ATGTATGGAA
*
16283381 TCCAGCACTGGACGCAGATGGAGATGTTTTATAATGGGTTGAATGCACATATGGGT
1 TCCAGCACTGGACACAGATGGAGATGTTTTATAATGGGTTGAATGCACATATGGGT
*
16283437 TCCAGCACTGGACATAGATGGAGATGTTTTATAATGGGTTGAATGCACATA
1 TCCAGCACTGGACACAGATGGAGATGTTTTATAATGGGTTGAATGCACATA
16283488 CGAGGATAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (56 bp):
TCCAGCACTGGACACAGATGGAGATGTTTTATAATGGGTTGAATGCACATATGGGT
Found at i:16283527 original size:33 final size:33
Alignment explanation
Indices: 16283485--16283550 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
16283475 TTGAATGCAC
* * *
16283485 ATACGAGGATAGTAGTTGATGCTTTTGCCAATG
1 ATACGAGGATAATAGTTGATGCTTCTACCAATG
16283518 ATACGAGGATAATAGTTGATGCTTCTACCAATG
1 ATACGAGGATAATAGTTGATGCTTCTACCAATG
16283551 GTACCCTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (33 bp):
ATACGAGGATAATAGTTGATGCTTCTACCAATG
Found at i:16288320 original size:5 final size:5
Alignment explanation
Indices: 16288312--16288348 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
16288302 TTAAATTAAT
16288312 AAAAG AAAAG TAAAAG AAAAG AAAAG AAAAAG AAAAG
1 AAAAG AAAAG -AAAAG AAAAG AAAAG -AAAAG AAAAG
16288349 TTTCATCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 20 0.67
6 10 0.33
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:16288333 original size:16 final size:16
Alignment explanation
Indices: 16288312--16288348 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
16288302 TTAAATTAAT
*
16288312 AAAAGAAAAGTAAAAG
1 AAAAGAAAAGAAAAAG
16288328 AAAAGAAAAGAAAAAG
1 AAAAGAAAAGAAAAAG
16288344 AAAAG
1 AAAAG
16288349 TTTCATCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAGAAAAAG
Found at i:16288342 original size:11 final size:10
Alignment explanation
Indices: 16288312--16288348 Score: 56
Period size: 11 Copynumber: 3.5 Consensus size: 10
16288302 TTAAATTAAT
16288312 AAAAGAAAAG
1 AAAAGAAAAG
16288322 TAAAAGAAAAG
1 -AAAAGAAAAG
16288333 AAAAGAAAAAG
1 AAAAG-AAAAG
16288344 AAAAG
1 AAAAG
16288349 TTTCATCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:16291803 original size:20 final size:22
Alignment explanation
Indices: 16291768--16291808 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
16291758 AATACAAGCA
16291768 TTTTCATTATGTTTTAGTTAAG
1 TTTTCATTATGTTTTAGTTAAG
*
16291790 TTTTC-TTA-GTTTTATTTAA
1 TTTTCATTATGTTTTAGTTAA
16291809 ATTCAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (22 bp):
TTTTCATTATGTTTTAGTTAAG
Found at i:16292919 original size:15 final size:14
Alignment explanation
Indices: 16292892--16292923 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
16292882 TATCTCTTGA
16292892 ATTTTATTTATTTT
1 ATTTTATTTATTTT
16292906 ATTTTATGTTATTTT
1 ATTTTAT-TTATTTT
16292921 ATT
1 ATT
16292924 ATTCAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (14 bp):
ATTTTATTTATTTT
Found at i:16300018 original size:29 final size:28
Alignment explanation
Indices: 16299986--16300260 Score: 203
Period size: 29 Copynumber: 9.5 Consensus size: 28
16299976 AGTTTGTCGC
* *
16299986 AAGGCATACCTTTAATCGAGATAGCCAAA
1 AAGGCAT-CCTTTAATAGAGATAGCCACA
*
16300015 AAGGCATCCTATTAACAGAGATAGCCACA
1 AAGGCATCCT-TTAATAGAGATAGCCACA
*
16300044 AAGGCATCCTTCTAGTAGAGATAGCCACA
1 AAGGCATCCTT-TAATAGAGATAGCCACA
* * * ** *
16300073 AATGCCTCAATTTAACGGAGATAGCCATA
1 AAGGCATC-CTTTAATAGAGATAGCCACA
* *
16300102 AAAG-ATTCCGTTTAATAGAGATAGCCATA
1 AAGGCA-TCC-TTTAATAGAGATAGCCACA
* *
16300131 AATGCATCATTTTAATAGAGATAGCCACA
1 AAGGCATC-CTTTAATAGAGATAGCCACA
* **
16300160 AAGGCTTCCTTTTAATAGAGATTTCCACA
1 AAGGCATCC-TTTAATAGAGATAGCCACA
* * * *
16300189 AAGG-ATTCCTTTTGATAGAGGTAACCACG
1 AAGGCA-TCC-TTTAATAGAGATAGCCACA
* * * *
16300218 AATGCTTCTTTTTCATAGAGATAGCCACA
1 AAGGCATC-CTTTAATAGAGATAGCCACA
16300247 AAGGCATCCGTTTA
1 AAGGCATCC-TTTA
16300261 GAAATAGCAG
Statistics
Matches: 192, Mismatches: 42, Indels: 24
0.74 0.16 0.09
Matches are distributed among these distances:
28 4 0.02
29 185 0.96
30 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (28 bp):
AAGGCATCCTTTAATAGAGATAGCCACA
Found at i:16300150 original size:87 final size:87
Alignment explanation
Indices: 16300026--16300251 Score: 236
Period size: 87 Copynumber: 2.6 Consensus size: 87
16300016 AGGCATCCTA
* * * * * * *
16300026 TTAACAGAGATAGCCACAAAGGCATCCTTCTAGTAGAGATAGCCACAAATGCCTCAATTTAACGG
1 TTAATAGAGATAGCCACAAATGCATCATTTTAATAGAGATAGCCACAAAGGCCTCAATTTAACAG
*
16300091 AGATAGCCATAAAAGATTCCGT
66 AGATAGCCACAAAAGATTCCGT
* * ** *
16300113 TTAATAGAGATAGCCATAAATGCATCATTTTAATAGAGATAGCCACAAAGGCTTCCTTTTAATAG
1 TTAATAGAGATAGCCACAAATGCATCATTTTAATAGAGATAGCCACAAAGGCCTCAATTTAACAG
** * *
16300178 AGATTTCCACAAAGGATTCCTT
66 AGATAGCCACAAAAGATTCCGT
* * * * * * *
16300200 TTGATAGAGGTAACCACGAATGCTTCTTTTTCATAGAGATAGCCACAAAGGC
1 TTAATAGAGATAGCCACAAATGCATCATTTTAATAGAGATAGCCACAAAGGC
16300252 ATCCGTTTAG
Statistics
Matches: 114, Mismatches: 25, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
87 114 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (87 bp):
TTAATAGAGATAGCCACAAATGCATCATTTTAATAGAGATAGCCACAAAGGCCTCAATTTAACAG
AGATAGCCACAAAAGATTCCGT
Found at i:16304178 original size:29 final size:29
Alignment explanation
Indices: 16304138--16304207 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
16304128 AAGGAATTCC
* *
16304138 TTTAATTA-AGATAATCACACAGGCACCCT
1 TTTAA-TAGAGATAACCACAAAGGCACCCT
** **
16304167 TTTAATAGAGATTGCCACAAAGGCTTCCT
1 TTTAATAGAGATAACCACAAAGGCACCCT
16304196 TTTAATAGAGAT
1 TTTAATAGAGAT
16304208 CGCCATAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 2 0.06
29 32 0.94
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (29 bp):
TTTAATAGAGATAACCACAAAGGCACCCT
Found at i:16304227 original size:29 final size:29
Alignment explanation
Indices: 16304164--16304234 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
16304154 ACACAGGCAC
* * *
16304164 CCTTTTAATAGAGATTGCCACAAAGGCTT
1 CCTTTTAATAGAGATCGCCACAAAAGATT
* *
16304193 CCTTTTAATAGAGATCGCCATAAAATATT
1 CCTTTTAATAGAGATCGCCACAAAAGATT
* *
16304222 CTTTTTGATAGAG
1 CCTTTTAATAGAG
16304235 GCAGCCATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (29 bp):
CCTTTTAATAGAGATCGCCACAAAAGATT
Found at i:16315085 original size:43 final size:43
Alignment explanation
Indices: 16314977--16315088 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
16314967 GGAGATCTTG
* * ** *
16314977 ATGTTAATTTGGCATGGATATAAGTTAAGCAAGTAAAAGATTA
1 ATGTTAATTAGGCATGGATATATGTTAAAAAACTAAAAGATTA
*
16315020 ATGTTAATTAGGCATGGATATATGTTAAAAAACTAAAAGGTTA
1 ATGTTAATTAGGCATGGATATATGTTAAAAAACTAAAAGATTA
16315063 ATGTTAATTAGGCATGGATATATGTT
1 ATGTTAATTAGGCATGGATATATGTT
16315089 TACGATAGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (43 bp):
ATGTTAATTAGGCATGGATATATGTTAAAAAACTAAAAGATTA
Found at i:16325430 original size:23 final size:23
Alignment explanation
Indices: 16325404--16325447 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
16325394 TAATTAAACC
* *
16325404 TTAATTTACTTAATTAATCATAT
1 TTAATTAAATTAATTAATCATAT
*
16325427 TTAATTAAATTCATTAATCAT
1 TTAATTAAATTAATTAATCAT
16325448 TAATAATACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAATTAAATTAATTAATCATAT
Found at i:16337597 original size:11 final size:11
Alignment explanation
Indices: 16337581--16337605 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16337571 GATGCGTCCC
16337581 CAAACAGAATA
1 CAAACAGAATA
16337592 CAAACAGAATA
1 CAAACAGAATA
16337603 CAA
1 CAA
16337606 TCATCTGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.20, G:0.08, T:0.08
Consensus pattern (11 bp):
CAAACAGAATA
Found at i:16346188 original size:26 final size:26
Alignment explanation
Indices: 16346159--16346208 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16346149 AAATGATAGA
* *
16346159 ATTAATTA-TATAAATATTTTAAAATT
1 ATTAAATATTATAAA-ATTTAAAAATT
16346185 ATTAAATATTATAAAATTTAAAAA
1 ATTAAATATTATAAAATTTAAAAA
16346209 CACTACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTAAATATTATAAAATTTAAAAATT
Found at i:16346192 original size:18 final size:19
Alignment explanation
Indices: 16346162--16346202 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
16346152 TGATAGAATT
*
16346162 AATTATATAAATATTTTAA
1 AATTATATAAATATTATAA
16346181 AATTAT-TAAATATTATAA
1 AATTATATAAATATTATAA
16346199 AATT
1 AATT
16346203 TAAAAACACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AATTATATAAATATTATAA
Found at i:16348096 original size:33 final size:33
Alignment explanation
Indices: 16348054--16348131 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
16348044 GCTGTGTGCG
* *
16348054 AGGCCGTGTGTGACACACGGGCAATGCCATTTT
1 AGGCCGTGTGGGACACACGGGCAAGGCCATTTT
*
16348087 AGGCCGTGTGGGCCACACGGGCAAGGCCATTTT
1 AGGCCGTGTGGGACACACGGGCAAGGCCATTTT
* *
16348120 GGGCCCTGTGGG
1 AGGCCGTGTGGG
16348132 CCTAAATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.21
Consensus pattern (33 bp):
AGGCCGTGTGGGACACACGGGCAAGGCCATTTT
Found at i:16348358 original size:28 final size:28
Alignment explanation
Indices: 16348326--16348383 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
16348316 AGCATGTCCA
* * *
16348326 ATATCTGTTTTGAGTATGCATGATATAT
1 ATATCTATTATGAGCATGCATGATATAT
*
16348354 ATATCTATTATGAGCATGCATTATATAT
1 ATATCTATTATGAGCATGCATGATATAT
16348382 AT
1 AT
16348384 TATGGTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.45
Consensus pattern (28 bp):
ATATCTATTATGAGCATGCATGATATAT
Found at i:16350009 original size:46 final size:46
Alignment explanation
Indices: 16349899--16350152 Score: 383
Period size: 46 Copynumber: 5.6 Consensus size: 46
16349889 TACATATGAT
* * *
16349899 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
16349942 CACTTATCACTTT-TTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTT-ACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
16349988 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGTTAAAGCCAC
1 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
16350034 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTAC
16350080 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTAC
16350126 CACTTATCACTTTGTCT-CTTGATCAGA
1 CACTTATCACTTTGT-TACTTGATCAGA
16350153 AGTACTCAAA
Statistics
Matches: 192, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
43 10 0.05
44 3 0.02
45 20 0.10
46 156 0.81
47 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:16350052 original size:92 final size:92
Alignment explanation
Indices: 16349897--16350152 Score: 428
Period size: 92 Copynumber: 2.8 Consensus size: 92
16349887 CTTACATATG
* * * *
16349897 ATCACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTTTCA
1 ATCACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCA
16349959 CTTGATCAGATAAGTGTAGCTAAAGCT
66 CTTGATCAGATAAGTGTAGCTAAAGCT
* *
16349986 ATCACTTATCACTTTGTTACTTGATCAGATAAGTGTAGTTAAAGCCACCACTTATCACTTTGTCA
1 ATCACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCA
16350051 CTTGATCAGATAAGTGTAGCTAAAGCT
66 CTTGATCAGATAAGTGTAGCTAAAGCT
*
16350078 ATCACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCT
1 ATCACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCA
16350143 CTTGATCAGA
66 CTTGATCAGA
16350153 AGTACTCAAA
Statistics
Matches: 155, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
89 12 0.08
90 3 0.02
91 20 0.13
92 120 0.77
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (92 bp):
ATCACTTATCACTTTGTTACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCA
CTTGATCAGATAAGTGTAGCTAAAGCT
Found at i:16362026 original size:37 final size:37
Alignment explanation
Indices: 16361978--16362051 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
16361968 TTAGACAAAG
*
16361978 AAAGATTTTGGACACATAGAGGAGAATTAGGTATTAC
1 AAAGATTTTGGACACATAGAGGAGAATTAGATATTAC
16362015 AAAGATTTTGGACACATAGAGGAGAATTAGATATTAC
1 AAAGATTTTGGACACATAGAGGAGAATTAGATATTAC
16362052 TACATTGTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (37 bp):
AAAGATTTTGGACACATAGAGGAGAATTAGATATTAC
Found at i:16362294 original size:13 final size:13
Alignment explanation
Indices: 16362271--16362303 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
16362261 ATGGATTAAA
16362271 TTTTGTTAACTTAG
1 TTTT-TTAACTTAG
16362285 TTTTTTAACTTAG
1 TTTTTTAACTTAG
16362298 TTTTTT
1 TTTTTT
16362304 TTTTGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.18, C:0.06, G:0.09, T:0.67
Consensus pattern (13 bp):
TTTTTTAACTTAG
Found at i:16372718 original size:298 final size:298
Alignment explanation
Indices: 16372175--16372776 Score: 1141
Period size: 298 Copynumber: 2.0 Consensus size: 298
16372165 CACGGTAACA
16372175 GAGAGTTACATGGTTTGGAGATATGGCCATGTGTGACACATGACCTGGCACACAAGTGTGTGGTA
1 GAGAGTTACATGGTTTGGAGATATGGCCATGTGTGACACATGACCTGGCACACAAGTGTGTGGTA
16372240 GACCGTGTGACCCACAAGGCCTCTCATACGGGCATGGAAGAAGCAAAGGATCATCACACACGACC
66 GACCGTGTGACCCACAAGGCCTCTCATACGGGCATGGAAGAAGCAAAGGATCATCACACACGACC
*
16372305 TCATGTAAGGTGTGTGTGACACACAACCTGGACAAATAGGCATGTGGATACTAGGCGTATTTTTT
131 TCACGTAAGGTGTGTGTGACACACAACCTGGACAAATAGGCATGTGGATACTAGGCGTATTTTTT
*
16372370 TATTCTTTTTCGAAGCATCACACGGGGTAAAATGACCCACACAGCCTAGCGACATGGCCTTGTGT
196 TATTCTTTTTCGAAGCATCACACGGGGTAAAATGACCCACACAACCTAGCGACATGGCCTTGTGT
16372435 GGAACATAGCCTGGACACACAGGAGTGTTCTAGGCTAT
261 GGAACATAGCCTGGACACACAGGAGTGTTCTAGGCTAT
16372473 GAGAGTTACATGGTTTGGAGATATGGCCATGTGTGACACATGACCTGGCACACAAGTGTGTGGTA
1 GAGAGTTACATGGTTTGGAGATATGGCCATGTGTGACACATGACCTGGCACACAAGTGTGTGGTA
* **
16372538 GACCGTGTGACCCACACGGCCTCTCATACGGGTGTGGAAGAAGCAAAGGATCATCACACACGACC
66 GACCGTGTGACCCACAAGGCCTCTCATACGGGCATGGAAGAAGCAAAGGATCATCACACACGACC
*
16372603 TCACGTAAGGTGTGTGTGACACACAACGTGGACAAATAGGCATGTGGATACTAGGCGTATTTTTT
131 TCACGTAAGGTGTGTGTGACACACAACCTGGACAAATAGGCATGTGGATACTAGGCGTATTTTTT
16372668 TATTCTTTTTCGAAGCATCACACGGGGTAAAATGACCCACACAACCTAGCGACATGGCCTTGTGT
196 TATTCTTTTTCGAAGCATCACACGGGGTAAAATGACCCACACAACCTAGCGACATGGCCTTGTGT
16372733 GGAACATAGCCTGGACACACAGGAGTGTTCTAGGCTAT
261 GGAACATAGCCTGGACACACAGGAGTGTTCTAGGCTAT
*
16372771 GTGAGT
1 GAGAGT
16372777 CTTGGAGCTT
Statistics
Matches: 297, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
298 297 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (298 bp):
GAGAGTTACATGGTTTGGAGATATGGCCATGTGTGACACATGACCTGGCACACAAGTGTGTGGTA
GACCGTGTGACCCACAAGGCCTCTCATACGGGCATGGAAGAAGCAAAGGATCATCACACACGACC
TCACGTAAGGTGTGTGTGACACACAACCTGGACAAATAGGCATGTGGATACTAGGCGTATTTTTT
TATTCTTTTTCGAAGCATCACACGGGGTAAAATGACCCACACAACCTAGCGACATGGCCTTGTGT
GGAACATAGCCTGGACACACAGGAGTGTTCTAGGCTAT
Found at i:16373434 original size:18 final size:18
Alignment explanation
Indices: 16373411--16373461 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
16373401 TGCTTGTTTC
16373411 TATTTTATT-TTCTTTATT
1 TATTTTATTATT-TTTATT
16373429 TATTTTATTATTTTTATTAT
1 TATTTTATTATTTTTA-T-T
16373449 TATCTTTATTATT
1 TAT-TTTATTATT
16373462 ATGTAATCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 13 0.45
19 3 0.10
20 4 0.14
21 9 0.31
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (18 bp):
TATTTTATTATTTTTATT
Found at i:16373439 original size:21 final size:21
Alignment explanation
Indices: 16373415--16373461 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
16373405 TGTTTCTATT
16373415 TTATTTTCT-TTATTTAT-TTTA
1 TTATTTT-TATTA-TTATCTTTA
16373436 TTATTTTTATTATTATCTTTA
1 TTATTTTTATTATTATCTTTA
16373457 TTATT
1 TTATT
16373462 ATGTAATCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (21 bp):
TTATTTTTATTATTATCTTTA
Found at i:16373456 original size:12 final size:12
Alignment explanation
Indices: 16373433--16373463 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
16373423 TTTATTTATT
*
16373433 TTATTATTTTTA
1 TTATTATCTTTA
16373445 TTATTATCTTTA
1 TTATTATCTTTA
16373457 TTATTAT
1 TTATTAT
16373464 GTAATCTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (12 bp):
TTATTATCTTTA
Found at i:16377767 original size:11 final size:11
Alignment explanation
Indices: 16377740--16377793 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
16377730 TTTTCTTTCT
16377740 ATATTATTAATA
1 ATATTATTAA-A
16377752 ATATTATTAAA
1 ATATTATTAAA
* *
16377763 ATATTATTTAT
1 ATATTATTAAA
*
16377774 ATATTATTAAT
1 ATATTATTAAA
16377785 ATATT-TTAA
1 ATATTATTAA
16377794 TTTATATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
10 4 0.10
11 25 0.64
12 10 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATATTATTAAA
Found at i:16377802 original size:25 final size:22
Alignment explanation
Indices: 16377740--16377789 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
16377730 TTTTCTTTCT
*
16377740 ATATTATTAATAATATTATTAAA
1 ATATTATTTAT-ATATTATTAAA
*
16377763 ATATTATTTATATATTATTAAT
1 ATATTATTTATATATTATTAAA
16377785 ATATT
1 ATATT
16377790 TTAATTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 15 0.60
23 10 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
ATATTATTTATATATTATTAAA
Found at i:16377815 original size:15 final size:15
Alignment explanation
Indices: 16377779--16377817 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
16377769 TTTATATATT
*
16377779 ATTA-ATATATTTTA
1 ATTATATATATTTCA
16377793 ATTTATATATATTTCA
1 A-TTATATATATTTCA
16377809 ATTATATAT
1 ATTATATAT
16377818 TTAAATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 11 0.50
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTATATATATTTCA
Found at i:16377849 original size:15 final size:15
Alignment explanation
Indices: 16377825--16377862 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
16377815 TATTTAAATG
*
16377825 ATAAATAATAATAAA
1 ATAAACAATAATAAA
16377840 ATAAACAATAATAAA
1 ATAAACAATAATAAA
16377855 ATAAACAA
1 ATAAACAA
16377863 ACCAATTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (15 bp):
ATAAACAATAATAAA
Found at i:16378016 original size:21 final size:21
Alignment explanation
Indices: 16377976--16378014 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
16377966 AAATCATGGA
16377976 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
16377997 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
16378015 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:16378351 original size:23 final size:21
Alignment explanation
Indices: 16378309--16378367 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 21
16378299 TTTTACTTTG
*
16378309 TTATATAGATTATTATT--TA
1 TTATATAGAGTATTATTAATA
16378328 TCTATATAGAGTATTATT-A-A
1 T-TATATAGAGTATTATTAATA
16378348 TTATATAGAGTATTATTAAT
1 TTATATAGAGTATTATTAAT
16378368 CCATAGATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (21 bp):
TTATATAGAGTATTATTAATA
Found at i:16378354 original size:19 final size:19
Alignment explanation
Indices: 16378309--16378367 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
16378299 TTTTACTTTG
* *
16378309 TTATATAGATTATTATTTA
1 TTATATAGAGTATTATTAA
16378328 TCTATATAGAGTATTATTAA
1 T-TATATAGAGTATTATTAA
16378348 TTATATAGAGTATTATTAA
1 TTATATAGAGTATTATTAA
16378367 T
1 T
16378368 CCATAGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (19 bp):
TTATATAGAGTATTATTAA
Found at i:16378438 original size:21 final size:21
Alignment explanation
Indices: 16378414--16378454 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
16378404 AGATTGATTA
* *
16378414 TATAGATATATCCAACTTTTC
1 TATAGAGATATACAACTTTTC
*
16378435 TATAGAGATATAGAACTTTT
1 TATAGAGATATACAACTTTT
16378455 ATCAGTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (21 bp):
TATAGAGATATACAACTTTTC
Found at i:16379717 original size:9 final size:9
Alignment explanation
Indices: 16379703--16379733 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
16379693 ATGCTAACCA
16379703 TATGCAAAT
1 TATGCAAAT
16379712 TATGCAAAT
1 TATGCAAAT
16379721 TATGCAAAT
1 TATGCAAAT
16379730 TATG
1 TATG
16379734 TGACCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (9 bp):
TATGCAAAT
Found at i:16391210 original size:387 final size:389
Alignment explanation
Indices: 16390278--16391446 Score: 2225
Period size: 389 Copynumber: 3.0 Consensus size: 389
16390268 ATCATCGTGC
16390278 TATTAAACTAGGAATCAATTGCGAAGCTAATAGCATAACCTTCCACCTATTGGTCTCCAAGCTCT
1 TATTAAACTAGGAATCAATTGCGAAGCTAATAGCATAACCTTCCACCTATTGGTCTCCAAGCTCT
*
16390343 CATCCTCACCTATGTATCCCCAATTATGCCCCGCCCTCAAGCATAACCTCAAACGCAATAAACTC
66 CATCCTCACCTATGTATCCCCAATTATGCCCCGCCCTCAAGCGTAACCTCAAACGCAATAAACTC
*
16390408 ATTCTGAGCAACAACCTAAAGACATTGATTCTTACCTTTTTCGGCCTCATGCTGTGGTGTTTGAC
131 ATTCTGAGCAACAACCTAAAGACATCGATTCTTACCTTTTTCGGCCTCATGCTGTGGTGTTTGAC
*
16390473 CCGACCTGAATGTGGCAGTTATTAATGTTGAAAAAAATGGTAAAAGCTAAATATGCTTAAGTTTT
196 CCGACCTGAACGTGGCAGTTATTAATGTTGAAAAAAATGGTAAAAGCTAAATATGCTTAAGTTTT
16390538 CTTCGTGATTTTTTCTCCTTAAATTGTTTTATTTATAAAATTATTATTTTAATAAATAAATGTCA
261 CTTCGTGATTTTTTCTCCTTAAATTGTTTTATTTATAAAATTATTATTTTAATAAATAAATGTCA
*
16390603 TATTAGAAAATGAGAAAAAATATATATATGCTTTTATTTATAAATATTTTATAATTTTTATATG
326 TATTAGAAAATGAGAAAAAATATATATATGCATTTATTTATAAATATTTTATAATTTTTATATG
16390667 TATTAAACTAGGAATCAATTGCGAAGCTAATAGCATAACCTTCCACCTATTGGTCTCCAAGCTCT
1 TATTAAACTAGGAATCAATTGCGAAGCTAATAGCATAACCTTCCACCTATTGGTCTCCAAGCTCT
16390732 CATCCTCACCTATGTATCCCCAATTATGCCCCGCCCTCAAGCGTAACCTCAAACGCAATAAACTC
66 CATCCTCACCTATGTATCCCCAATTATGCCCCGCCCTCAAGCGTAACCTCAAACGCAATAAACTC
*
16390797 ATTCTGAGCAACAACCTAAAGACATCGATTCTTACCTTTTTCGGCCTCATGCTGTAGTGTTTGAC
131 ATTCTGAGCAACAACCTAAAGACATCGATTCTTACCTTTTTCGGCCTCATGCTGTGGTGTTTGAC
16390862 CCGACCTGAACGTGGCAGTTATTAATGTTGAAAAAAATGGTAAAAGCTAAATATGCTTAAGTTTT
196 CCGACCTGAACGTGGCAGTTATTAATGTTGAAAAAAATGGTAAAAGCTAAATATGCTTAAGTTTT
* **
16390927 CTTTGTGATTTTAACTCCTTAAATTGTTTTATTTATAAAATTATTATTTTAATAAATAAATGTCA
261 CTTCGTGATTTTTTCTCCTTAAATTGTTTTATTTATAAAATTATTATTTTAATAAATAAATGTCA
16390992 TATTAGAAAATGAG-AAAAA-ATATATATGCATTTATTTATAAATATTTTATAATTTTTATATG
326 TATTAGAAAATGAGAAAAAATATATATATGCATTTATTTATAAATATTTTATAATTTTTATATG
16391054 TATTAAACTAGGAATCAATTGCGAAGCTAATAGCATAACCTTCCACCTATTGGTCTCCAAGCTCT
1 TATTAAACTAGGAATCAATTGCGAAGCTAATAGCATAACCTTCCACCTATTGGTCTCCAAGCTCT
16391119 CATCCTCACCTATGTATCCCCAATTATGCCCCGCCCTCAAGCGTAACCTCAAACGCAATAAACTC
66 CATCCTCACCTATGTATCCCCAATTATGCCCCGCCCTCAAGCGTAACCTCAAACGCAATAAACTC
*
16391184 ATTCTGAGCAACAACCTAAAGACATCGATTCTTACCTTTTTCGGCCTCATGTTGTGGTGTTTGAC
131 ATTCTGAGCAACAACCTAAAGACATCGATTCTTACCTTTTTCGGCCTCATGCTGTGGTGTTTGAC
*
16391249 CCGACCTGAAGGTGGCAGTTATTAATGTTGAAAAAAATGGTAAAAGCTAAATATGCTTAAGTTTT
196 CCGACCTGAACGTGGCAGTTATTAATGTTGAAAAAAATGGTAAAAGCTAAATATGCTTAAGTTTT
16391314 CTTCGTGATTTTTTCTCCTTAAATTGTTTTATTTATAAAATTATTATTTTAATAAATAAATGTCA
261 CTTCGTGATTTTTTCTCCTTAAATTGTTTTATTTATAAAATTATTATTTTAATAAATAAATGTCA
*
16391379 TATTAGAAAATGAGAAAAAATATATATATGCATTTGTTTATAAATATTTTATAATTTTTATATG
326 TATTAGAAAATGAGAAAAAATATATATATGCATTTATTTATAAATATTTTATAATTTTTATATG
16391443 TATT
1 TATT
16391447 TTCATCAAAA
Statistics
Matches: 763, Mismatches: 15, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
387 375 0.49
388 10 0.01
389 378 0.50
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (389 bp):
TATTAAACTAGGAATCAATTGCGAAGCTAATAGCATAACCTTCCACCTATTGGTCTCCAAGCTCT
CATCCTCACCTATGTATCCCCAATTATGCCCCGCCCTCAAGCGTAACCTCAAACGCAATAAACTC
ATTCTGAGCAACAACCTAAAGACATCGATTCTTACCTTTTTCGGCCTCATGCTGTGGTGTTTGAC
CCGACCTGAACGTGGCAGTTATTAATGTTGAAAAAAATGGTAAAAGCTAAATATGCTTAAGTTTT
CTTCGTGATTTTTTCTCCTTAAATTGTTTTATTTATAAAATTATTATTTTAATAAATAAATGTCA
TATTAGAAAATGAGAAAAAATATATATATGCATTTATTTATAAATATTTTATAATTTTTATATG
Found at i:16391498 original size:24 final size:24
Alignment explanation
Indices: 16391463--16391521 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
16391453 AAAAATGAAC
*
16391463 TTTTAAATAATTTTTAATTTTAATT
1 TTTTAAA-AATTTTTAATTTTAAAT
*
16391488 TTTTTAAAATTTTTAATTTTAAAT
1 TTTTAAAAATTTTTAATTTTAAAT
16391512 TTTTAAAAAT
1 TTTTAAAAAT
16391522 CAAGATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTAAAAATTTTTAATTTTAAAT
Found at i:16394345 original size:12 final size:12
Alignment explanation
Indices: 16394328--16394353 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16394318 TGTTAGAGTA
16394328 GAGCTTTCGAAT
1 GAGCTTTCGAAT
16394340 GAGCTTTCGAAT
1 GAGCTTTCGAAT
16394352 GA
1 GA
16394354 ATCCCCATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (12 bp):
GAGCTTTCGAAT
Found at i:16408469 original size:34 final size:34
Alignment explanation
Indices: 16408426--16408490 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
16408416 TTAAAGCTAG
*
16408426 TTAAAGGTTAAAAAAGAAGTTTAGGGAACAATTA
1 TTAAAGGTTAAAAAAGAAGTTTACGGAACAATTA
16408460 TTAAAGGTTAAAAAAGAAGTTTACGGAACAA
1 TTAAAGGTTAAAAAAGAAGTTTACGGAACAA
16408491 AATTGTTGCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.25
Consensus pattern (34 bp):
TTAAAGGTTAAAAAAGAAGTTTACGGAACAATTA
Found at i:16412993 original size:22 final size:22
Alignment explanation
Indices: 16412965--16413022 Score: 116
Period size: 22 Copynumber: 2.6 Consensus size: 22
16412955 GCAGAGCAGA
16412965 GTAAACCTCTTATTCAGCTGTG
1 GTAAACCTCTTATTCAGCTGTG
16412987 GTAAACCTCTTATTCAGCTGTG
1 GTAAACCTCTTATTCAGCTGTG
16413009 GTAAACCTCTTATT
1 GTAAACCTCTTATT
16413023 TTGCTCAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (22 bp):
GTAAACCTCTTATTCAGCTGTG
Found at i:16417591 original size:13 final size:13
Alignment explanation
Indices: 16417573--16417601 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
16417563 TTGCTAAGAG
16417573 ATAATATCTTATA
1 ATAATATCTTATA
16417586 ATAATATCTTATA
1 ATAATATCTTATA
16417599 ATA
1 ATA
16417602 TCTCACTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (13 bp):
ATAATATCTTATA
Found at i:16417651 original size:56 final size:56
Alignment explanation
Indices: 16417499--16417653 Score: 211
Period size: 56 Copynumber: 2.8 Consensus size: 56
16417489 AGTTATTTAA
* * *
16417499 GAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAATATCCCATTCG
1 GAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTATAATATCCCACTAG
* ** *
16417555 GAATCAAATTGCTAAGAGATAATATCTTATAATAATATCTTATAATATCTCACTAG
1 GAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTATAATATCCCACTAG
* * * *
16417611 GAATCAAATTGTTAAAAAATAATATCCCATAATTACATCTTAT
1 GAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTAT
16417654 CATCCCCTCA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 85 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (56 bp):
GAATCAAATTGCTAAAAGATAATATCCCATAATAATATCTTATAATATCCCACTAG
Found at i:16421240 original size:57 final size:56
Alignment explanation
Indices: 16421145--16421302 Score: 262
Period size: 57 Copynumber: 2.8 Consensus size: 56
16421135 AGTAGTTACG
*
16421145 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAGTATCCCAT
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAATATCCCAT
* *
16421201 TAGGAATCAAATTGTCTAAGAGATAATATCCCATAATAATATCCTATAATATCTCAT
1 TAGGAATCAAATTG-CTAAAAGATAATATCCCATAATAATATCCTATAATATCCCAT
* *
16421258 TAGGAATCAAATTACTAAAAGGTAATATCCCATAATAATATCCTA
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTA
16421303 ACATTTACTT
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
56 43 0.45
57 52 0.55
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAATATCCCAT
Found at i:16428506 original size:29 final size:29
Alignment explanation
Indices: 16428391--16428526 Score: 96
Period size: 29 Copynumber: 4.6 Consensus size: 29
16428381 TCAACACCGG
* *
16428391 TACATAGTACTTGATAA-ATATAACA-CTGG
1 TACATAGTACCTGATAATATA-AACATC-GA
* * * * *
16428420 CACATAGTGCCTGATACAACATGAACATCAA
1 TACATAGTACCTGAT--AATATAAACATCGA
* * **
16428451 TACAAAGTACCTGATAATGTAGTCATCGA
1 TACATAGTACCTGATAATATAAACATCGA
16428480 TACATAGTACCTGATAATATAAACATCGA
1 TACATAGTACCTGATAATATAAACATCGA
* * *
16428509 CACATAGTGCCTGTTAAT
1 TACATAGTACCTGATAAT
16428527 CCCAAATGAC
Statistics
Matches: 81, Mismatches: 22, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
29 60 0.74
31 18 0.22
32 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (29 bp):
TACATAGTACCTGATAATATAAACATCGA
Found at i:16433995 original size:32 final size:32
Alignment explanation
Indices: 16433954--16434021 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
16433944 GTTCAACTAA
* * *
16433954 TTATTATGAGTTATCAAATTAAATTAATTAAT
1 TTATCATGAGTTATCAAATTAAAGTAATCAAT
* *
16433986 TTATCATGAGTTATTAAATTCAAGTAATCAAT
1 TTATCATGAGTTATCAAATTAAAGTAATCAAT
16434018 TTAT
1 TTAT
16434022 AAGTTTATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.46
Consensus pattern (32 bp):
TTATCATGAGTTATCAAATTAAAGTAATCAAT
Found at i:16436386 original size:87 final size:86
Alignment explanation
Indices: 16436161--16436495 Score: 373
Period size: 87 Copynumber: 3.8 Consensus size: 86
16436151 GATTGTCAAA
* * **
16436161 ACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTCGATGGTTGAAACCATCC
1 ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCC
*
16436226 CTTTTCATTAATGGATGGTCGTC
66 CTTTTCA-T-ATTGATGGTCGTC
* * * *
16436249 ACCATCCTTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACTATCT
1 ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCC
* *
16436314 CTTTTCATATTCGATGGTTGCC
66 CTTTTCATATT-GATGGTCGTC
** * ** * * * **
16436336 ACCATCCCTTTTCATAGTCGATAATTGAAACTATCCCTTTTCATATTCGATGGTCATCACCATCC
1 ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCC
* *
16436401 TTTTTCATAGTTGATGGTCATC
66 CTTTTCATA-TTGATGGTCGTC
* * * ** *
16436423 ACCATCCTTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTTGATAGTTGAAACTATCC
1 ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCC
16436488 CTTTTCAT
66 CTTTTCAT
16436496 TTTTTTAATA
Statistics
Matches: 199, Mismatches: 46, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
86 2 0.01
87 131 0.66
88 66 0.33
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.39
Consensus pattern (86 bp):
ACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCC
CTTTTCATATTGATGGTCGTC
Found at i:16436468 original size:29 final size:29
Alignment explanation
Indices: 16436161--16436473 Score: 326
Period size: 29 Copynumber: 10.8 Consensus size: 29
16436151 GATTGTCAAA
16436161 ACCATCCCTTTTCATA-TTCGATGGTCGTC
1 ACCATCCCTTTTCATAGTT-GATGGTCGTC
* * **
16436190 ACCATCCCTTTTCATAGTCGATGGTTGAA
1 ACCATCCCTTTTCATAGTTGATGGTCGTC
* *
16436219 ACCATCCCTTTTCATTAATGGATGGTCGTC
1 ACCATCCCTTTTCA-TAGTTGATGGTCGTC
*
16436249 ACCATCCTTTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATAGTTGATGGTCGTC
* * ***
16436278 ACCATCCCTTTTCATAGTCGATAGTCAAA
1 ACCATCCCTTTTCATAGTTGATGGTCGTC
* * * *
16436307 ACTATCTCTTTTCATA-TTCGATGGTTGCC
1 ACCATCCCTTTTCATAGTT-GATGGTCGTC
* ** * **
16436336 ACCATCCCTTTTCATAGTCGATAATTGAA
1 ACCATCCCTTTTCATAGTTGATGGTCGTC
* *
16436365 ACTATCCCTTTTCATA-TTCGATGGTCATC
1 ACCATCCCTTTTCATAGTT-GATGGTCGTC
* *
16436394 ACCATCCTTTTTCATAGTTGATGGTCATC
1 ACCATCCCTTTTCATAGTTGATGGTCGTC
*
16436423 ACCATCCTTTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATAGTTGATGGTCGTC
16436452 ACCATCCCTTTTCATAGTTGAT
1 ACCATCCCTTTTCATAGTTGAT
16436474 AGTTGAAACT
Statistics
Matches: 233, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
28 2 0.01
29 204 0.88
30 27 0.12
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.39
Consensus pattern (29 bp):
ACCATCCCTTTTCATAGTTGATGGTCGTC
Found at i:16437991 original size:73 final size:74
Alignment explanation
Indices: 16437872--16438027 Score: 242
Period size: 73 Copynumber: 2.1 Consensus size: 74
16437862 ATTGTCCAAA
* *
16437872 TAGAGCAAAAGATTTCAAGGATATCAAAGATTCCATAAGGGAAAAGGGAAAGGTGTGGCTATTGA
1 TAGAGCAAAAGATTTCAAGGATATCAAAGATTCAATAAGGGAAAAGGGAAAGGTGTGGCCATTGA
16437937 TGAGAA-CC
66 TGAGAACCC
* * * *
16437945 TAGAGCAAAATATTTCAAGGATATCAAAGATTTAATAAGGGAAAAGGTAAATGTGTGGCCATTGA
1 TAGAGCAAAAGATTTCAAGGATATCAAAGATTCAATAAGGGAAAAGGGAAAGGTGTGGCCATTGA
16438010 TGAGAACCC
66 TGAGAACCC
*
16438019 TGGAGCAAA
1 TAGAGCAAA
16438028 GAAGAGATGC
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
73 65 0.87
74 10 0.13
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.22
Consensus pattern (74 bp):
TAGAGCAAAAGATTTCAAGGATATCAAAGATTCAATAAGGGAAAAGGGAAAGGTGTGGCCATTGA
TGAGAACCC
Found at i:16446476 original size:97 final size:97
Alignment explanation
Indices: 16446310--16446491 Score: 303
Period size: 97 Copynumber: 1.9 Consensus size: 97
16446300 TTTCATATGT
*
16446310 CTTTCCATTAACCTTTACTTACCCGTTGAACCATATAGAATTACATCAGATACTCAGGAATACTC
1 CTTTCCATTAAACTTTACTTACCCGTTGAACCATATAGAATTACATCAGATACTCAGGAATACTC
*
16446375 ACACAAAGTGTACCTTTTCATATAATCGTAAC
66 ACACAAAGTGTAACTTTTCATATAATCGTAAC
* * *
16446407 CTTTCCATTAAACTTTACTTACCCGTTGAACTATATAGAATTACAT-TGAATACTGAGGAATACT
1 CTTTCCATTAAACTTTACTTACCCGTTGAACCATATAGAATTACATCAG-ATACTCAGGAATACT
16446471 CACACAAAGTGTAACTTTTCA
65 CACACAAAGTGTAACTTTTCA
16446492 AATGGGCCTG
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 1 0.01
97 78 0.99
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.33
Consensus pattern (97 bp):
CTTTCCATTAAACTTTACTTACCCGTTGAACCATATAGAATTACATCAGATACTCAGGAATACTC
ACACAAAGTGTAACTTTTCATATAATCGTAAC
Found at i:16451257 original size:15 final size:17
Alignment explanation
Indices: 16451226--16451258 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16451216 AATTACTCAT
16451226 TCAAATAACATAATTTA
1 TCAAATAACATAATTTA
16451243 TCAAATAA-A-AATTTA
1 TCAAATAACATAATTTA
16451258 T
1 T
16451259 TATTATACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
TCAAATAACATAATTTA
Found at i:16452299 original size:20 final size:20
Alignment explanation
Indices: 16452270--16452317 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
16452260 TGCTAGTTTA
* *
16452270 TTTGACTTTTGTTTTGTTGT
1 TTTGATTTTTGTTTCGTTGT
16452290 TTTGATTTTTTGTTTCGTTGT
1 TTTGA-TTTTTGTTTCGTTGT
*
16452311 TTGGATT
1 TTTGATT
16452318 GATGTAGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.06, C:0.04, G:0.21, T:0.69
Consensus pattern (20 bp):
TTTGATTTTTGTTTCGTTGT
Found at i:16452302 original size:21 final size:21
Alignment explanation
Indices: 16452276--16452317 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
16452266 TTTATTTGAC
* *
16452276 TTTTGTTTTGTTGTTTTGATT
1 TTTTGTTTCGTTGTTTGGATT
16452297 TTTTGTTTCGTTGTTTGGATT
1 TTTTGTTTCGTTGTTTGGATT
16452318 GATGTAGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.02, G:0.21, T:0.71
Consensus pattern (21 bp):
TTTTGTTTCGTTGTTTGGATT
Found at i:16452523 original size:21 final size:21
Alignment explanation
Indices: 16452499--16452540 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
16452489 AAAATAAACA
16452499 ACACCAAATTCATTTTTTAAT
1 ACACCAAATTCATTTTTTAAT
16452520 ACACCAAATTCATTTTTTAAT
1 ACACCAAATTCATTTTTTAAT
16452541 TCATTCATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.43
Consensus pattern (21 bp):
ACACCAAATTCATTTTTTAAT
Found at i:16453423 original size:20 final size:20
Alignment explanation
Indices: 16453349--16453428 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 20
16453339 CGCGATGCTA
*
16453349 AACAGGGGCACAATAGTGCAT
1 AACAGGGGCACGA-AGTGCAT
*
16453370 -ACAGGGGTACTGAAGTGCA-
1 AACAGGGGCAC-GAAGTGCAT
* *
16453389 AGCAGGGGCTCCGAAGTGCAT
1 AACAGGGGC-ACGAAGTGCAT
*
16453410 AATAGGGGCACGAATGTGC
1 AACAGGGGCACGAA-GTGC
16453429 GATTAAGGGC
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
20 33 0.72
21 13 0.28
ACGTcount: A:0.31, C:0.19, G:0.35, T:0.15
Consensus pattern (20 bp):
AACAGGGGCACGAAGTGCAT
Found at i:16458536 original size:126 final size:126
Alignment explanation
Indices: 16458311--16458814 Score: 891
Period size: 126 Copynumber: 4.0 Consensus size: 126
16458301 TGTAAAGAAG
*
16458311 CTATTTGGTTGAAGGGACTCTTTAGTAAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
1 CTATTTGGTTGAAGGGACTCTTTAGTGAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
*
16458376 GACAGACAGAGTGCCATCTTCCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
66 GACAGTCAGAGTGCCATCTTCCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
16458437 CTATTTGGTTGAAGGGACTCTTTAGTGAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
1 CTATTTGGTTGAAGGGACTCTTTAGTGAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
* *
16458502 GATAGTCAGAGTGTCATCTTCCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
66 GACAGTCAGAGTGCCATCTTCCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
*
16458563 CTATTTGGTTGAAGGGACTCTTTAGTGGACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
1 CTATTTGGTTGAAGGGACTCTTTAGTGAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
* * * * *
16458628 GATAGTTAAAGTGCCATCTTCATTACAAAAGATCAAATGTTTCATGAGAGAAAAAAACACA
66 GACAGTCAGAGTGCCATCTTCCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
*
16458689 CTATTTGGTTGAAGGGACTCTTGAGTGAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
1 CTATTTGGTTGAAGGGACTCTTTAGTGAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
* *
16458754 GACAGTCAGAGTGTCATCTTTCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
66 GACAGTCAGAGTGCCATCTTCCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
16458815 TTGATGTTTG
Statistics
Matches: 359, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 359 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
CTATTTGGTTGAAGGGACTCTTTAGTGAACTCAATGAAGACCTTCAAATCAATACAGTATTTTGT
GACAGTCAGAGTGCCATCTTCCTTACAAAAGATCAAATGTTTCATGAGAGAACAAAACACA
Found at i:16469012 original size:35 final size:35
Alignment explanation
Indices: 16468959--16469029 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
16468949 TTAAACTTTA
*
16468959 ACTTTCCAACTACATGCAAAAGTTACTTTCTCACC
1 ACTTTCCAACGACATGCAAAAGTTACTTTCTCACC
* *
16468994 ACTTTCCAACGACGTGCAAAAGTTATTTTCTCACC
1 ACTTTCCAACGACATGCAAAAGTTACTTTCTCACC
16469029 A
1 A
16469030 TTATACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (35 bp):
ACTTTCCAACGACATGCAAAAGTTACTTTCTCACC
Found at i:16474032 original size:26 final size:26
Alignment explanation
Indices: 16473998--16474048 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16473988 CAATTTCTAA
* *
16473998 AAAAAGATGCCTTTGTGGTTATCTCT
1 AAAAAGATGCCTTTATGGCTATCTCT
*
16474024 AAAAGGATGCCTTTATGGCTATCTC
1 AAAAAGATGCCTTTATGGCTATCTC
16474049 AGTCAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (26 bp):
AAAAAGATGCCTTTATGGCTATCTCT
Found at i:16474155 original size:29 final size:29
Alignment explanation
Indices: 16474109--16474166 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
16474099 GCAGTTTCAG
*
16474109 TAAGGAAGCCTTTATGGTGATCTCTGTTA
1 TAAGAAAGCCTTTATGGTGATCTCTGTTA
* *
16474138 TAAGAAAGCCTTTGTGGTTATCTCTGTTA
1 TAAGAAAGCCTTTATGGTGATCTCTGTTA
16474167 AAGGAATGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (29 bp):
TAAGAAAGCCTTTATGGTGATCTCTGTTA
Found at i:16476071 original size:6 final size:6
Alignment explanation
Indices: 16476060--16476099 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
16476050 AGGTTTCTAA
* *
16476060 AAATGG AAATGG AAATGG AAATGT AAATGA AAATGG AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
16476100 TTGAAATCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.55, C:0.00, G:0.25, T:0.20
Consensus pattern (6 bp):
AAATGG
Found at i:16483626 original size:6 final size:6
Alignment explanation
Indices: 16483599--16483638 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
16483589 ATGTTTTCAA
* * *
16483599 AAATGG AATTGA AAATGT AAATGG AAATGG AAATGG AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
16483639 TTATAATCCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.23
Consensus pattern (6 bp):
AAATGG
Found at i:16483809 original size:26 final size:26
Alignment explanation
Indices: 16483780--16483840 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
16483770 ATATTTTCTT
*
16483780 AAAATTTTACCTAGGCCAAAATCGTC
1 AAAATTTTACCAAGGCCAAAATCGTC
* ** *
16483806 AAAATTTAACCAAGGGTAAAATTGTC
1 AAAATTTTACCAAGGCCAAAATCGTC
16483832 AAAATTTTA
1 AAAATTTTA
16483841 TTTGAGGTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (26 bp):
AAAATTTTACCAAGGCCAAAATCGTC
Found at i:16490370 original size:835 final size:836
Alignment explanation
Indices: 16488760--16491271 Score: 4972
Period size: 836 Copynumber: 3.0 Consensus size: 836
16488750 CCTTAACACC
16488760 ATTTGTTGTTAGTATCATTGCTTCTAGATGACACTCTAAATGTTTATTTGGAAATTTCGAATGGG
1 ATTTGTTGTTAGTATCATTGCTTCTAGATGACACTCTAAATGTTTATTTGGAAATTTCGAATGGG
16488825 ACAGTAACCACCATATTAATAAAAGAGGTGGAAGGCCAACAACATCCTTTATATTATGCGAGTAA
66 ACAGTAACCACCATATTAATAAAAGAGGTGGAAGGCCAACAACATCCTTTATATTATGCGAGTAA
16488890 GGTACTCTAAAAAAGTGAACTGAGGTACCCTAAGCTAGAGAAGATTATTTTTTCCTTGGTGATAG
131 GGTACTCTAAAAAAGTGAACTGAGGTACCCTAAGCTAGAGAAGATTATTTTTTCCTTGGTGATAG
16488955 TTGCCAAAAAGCTTCACCCGTATTTCCAAGCCTATTTGGTCATCATTTTGTTAGACCTGTCGTTG
196 TTGCCAAAAAGCTTCACCCGTATTTCCAAGCCTATTTGGTCATCATTTTGTTAGACCTGTCGTTG
16489020 TGAGAAATTCTAGGAAAGATTGATGCCTCTGGTCACATGGTGAAATAGAGTGTAAAACTCAAAGA
261 TGAGAAATTCTAGGAAAGATTGATGCCTCTGGTCACATGGTGAAATAGAGTGTAAAACTCAAAGA
16489085 GTGGAATTCATTGTCGGATGTTCTTTTGCTCATTATATAGAGTCAAAACATTGTAGTAAACCCTT
326 GTGGAATTCATTGTCGGATGTTCTTTTGCTCATTATATAGAGTCAAAACATTGTAGTAAACCCTT
16489150 CGAAAGCTCAAGAAACTATTGCAGAACCTTTCGCAAAAAGTCTCTTGAGAATATTGTCACGTGGT
391 CGAAAGCTCAAGAAACTATTGCAGAACCTTTCGCAAAAAGTCTCTTGAGAATATTGTCACGTGGT
16489215 TTTTTCATGTGGATGGTTCTACAAGAAAGTTGGGTTCTAAAGTAGGTATCTCGTTAGTTTATCTG
456 TTTTTCATGTGGATGGTTCTACAAGAAAGTTGGGTTCTAAAGTAGGTATCTCGTTAGTTTATCTG
16489280 AATGATAACGAGTGGGAGGATGGTCTATCTTTTTCTTTTATGGCTTCTAATAATGTTATTGAAAT
521 AATGATAACGAGTGGGAGGATGGTCTATCTTTTTCTTTTATGGCTTCTAATAATGTTATTGAAAT
16489345 ATGAAGCAATGGTGGATGGTTTAGAACTTGCATAGAAATTGAAAGTTCAAAAGCTTCATGTTTAC
586 ATGAAGCAATGGTGGATGGTTTAGAACTTGCATAGAAATTGAAAGTTCAAAAGCTTCATGTTTAC
16489410 ATCGATTCCCAATTTATGGTAAAGTAGATCCAAAGAGAGTATGAAGTTAAAGATCCCATTTTAGC
651 ATCGATTCCCAATTTATGGTAAAGTAGATCCAAAGAGAGTATGAAGTTAAAGATCCCATTTTAGC
16489475 TAAATGCTACTCCATGGTGATGAAGATATTGCAAGGTTTCCTAGAAGTCCTAGTTGACAAGGTTC
716 TAAATGCTACTCCATGGTGATGAAGATATTGCAAGGTTTCCTAGAAGTCCTAGTTGACAAGGTTC
16489540 CTTGATTTGGAAACATAAAGGTTGATTCTTTGTCCCGAGTTGCATCCGCAGTAGGA
781 CTTGATTTGGAAACATAAAGGTTGATTCTTTGTCCCGAGTTGCATCCGCAGTAGGA
16489596 ATTTGTTGTTAGTATCATTGCTTCTAGATGACACTCTAAATGTTTATTTGGAAATTTCGAATGGG
1 ATTTGTTGTTAGTATCATTGCTTCTAGATGACACTCTAAATGTTTATTTGGAAATTTCGAATGGG
16489661 ACAGTAACCACCATATTAATAAAAGAGGTGGAAGGCCAACAACATCCTTTATATTATGCGAGTAA
66 ACAGTAACCACCATATTAATAAAAGAGGTGGAAGGCCAACAACATCCTTTATATTATGCGAGTAA
16489726 GGTACTCTAAAAAAGTGAACTGAGGTACCCTAAGCTAGAGAAGATTATTTTTTCCTTGGTGATAG
131 GGTACTCTAAAAAAGTGAACTGAGGTACCCTAAGCTAGAGAAGATTATTTTTTCCTTGGTGATAG
16489791 TTGCCAAAAAGCTTCACCCGTATTTCCAAGCCTATTTGGTCATCATTTTGTTAGACCTGTCGTTG
196 TTGCCAAAAAGCTTCACCCGTATTTCCAAGCCTATTTGGTCATCATTTTGTTAGACCTGTCGTTG
16489856 TGAGAAATTCTAGGAAAGATTG-TGCCTCTGGTCACATGGTGAAATAGAGTGTAAAACTCAAAGA
261 TGAGAAATTCTAGGAAAGATTGATGCCTCTGGTCACATGGTGAAATAGAGTGTAAAACTCAAAGA
16489920 GTGGAATTCATTGTCGGATGTTCTTTTGCTCATTATATAGAGTCAAAACATTGTAGTAAACCCTT
326 GTGGAATTCATTGTCGGATGTTCTTTTGCTCATTATATAGAGTCAAAACATTGTAGTAAACCCTT
*
16489985 CGAAAGCTCAAGAAACTATTGCAGAACCTTTCGCAAAAAGTCTCTTGAGAATATTATCACGTGGT
391 CGAAAGCTCAAGAAACTATTGCAGAACCTTTCGCAAAAAGTCTCTTGAGAATATTGTCACGTGGT
16490050 TTTTTCATGTGGATGGTTCTACAAGAAAGTTGGGTTCTAAAGTAGGTATCTCGTTAGTTTATCTG
456 TTTTTCATGTGGATGGTTCTACAAGAAAGTTGGGTTCTAAAGTAGGTATCTCGTTAGTTTATCTG
16490115 AATGATAACGAGTGGGAGGATGGTCTATCTTTTTCTTTTATGGCTTCTAATAATGTTATTGAAAT
521 AATGATAACGAGTGGGAGGATGGTCTATCTTTTTCTTTTATGGCTTCTAATAATGTTATTGAAAT
16490180 ATGAAGCAATGGTGGATGGTTTAGAACTTGCATAGAAATTGAAAGTTCAAAAGCTTCATGTTTAC
586 ATGAAGCAATGGTGGATGGTTTAGAACTTGCATAGAAATTGAAAGTTCAAAAGCTTCATGTTTAC
16490245 ATCGATTCCCAATTTATGGTAAAGTAGATCCAAAGAGAGTATGAAGTTAAAGATCCCATTTTAGC
651 ATCGATTCCCAATTTATGGTAAAGTAGATCCAAAGAGAGTATGAAGTTAAAGATCCCATTTTAGC
16490310 TAAATGCTACTCCATGGTGATGAAGATATTGCAAGGTTTCCTAGAAGTCCTAGTTGACAAGGTTC
716 TAAATGCTACTCCATGGTGATGAAGATATTGCAAGGTTTCCTAGAAGTCCTAGTTGACAAGGTTC
16490375 CTTGATTTGGAAACATAAAGGTTGATTCTTTGTCCCGAGTTGCATCCGCAGTAGGA
781 CTTGATTTGGAAACATAAAGGTTGATTCTTTGTCCCGAGTTGCATCCGCAGTAGGA
16490431 ATTTGTTGTTAGTATCATTGCTTCTAGATGACACTCTAAATGTTTATTTGGAAATTTCGAATGGG
1 ATTTGTTGTTAGTATCATTGCTTCTAGATGACACTCTAAATGTTTATTTGGAAATTTCGAATGGG
16490496 ACAGTAACCACCATATTAATAAAAGAGGTGGAAGGCCAACAACATCCTTTATATTATGCGAGTAA
66 ACAGTAACCACCATATTAATAAAAGAGGTGGAAGGCCAACAACATCCTTTATATTATGCGAGTAA
*
16490561 GGTACTCTAAAAAAGTGAACTGAGGTACCCTAAGCTAGAGAAGATTATTTTTGCCTTGGTGATAG
131 GGTACTCTAAAAAAGTGAACTGAGGTACCCTAAGCTAGAGAAGATTATTTTTTCCTTGGTGATAG
16490626 TTGCCAAAAAGCTTCACCCGTATTTCCAAGCCTATTTGGTCATCATTTTGTTAGACCTGTCGTTG
196 TTGCCAAAAAGCTTCACCCGTATTTCCAAGCCTATTTGGTCATCATTTTGTTAGACCTGTCGTTG
16490691 TGAGAAATTCTAGGAAAGATTGATGCCTCTGGTCACATGGTGAAATAGAGTGTAAAACTCAAAGA
261 TGAGAAATTCTAGGAAAGATTGATGCCTCTGGTCACATGGTGAAATAGAGTGTAAAACTCAAAGA
*
16490756 GTGGAATTCATTGTCGGATGTTCTTTTGCTCATTATATAGAGTCAAAACATTGTAGTAAACCTTT
326 GTGGAATTCATTGTCGGATGTTCTTTTGCTCATTATATAGAGTCAAAACATTGTAGTAAACCCTT
16490821 CGAAAGCTCAAGAAACTATTGCAGAACCTTTCGCAAAAAGTCTCTTGAGAATATTGTCACGTGGT
391 CGAAAGCTCAAGAAACTATTGCAGAACCTTTCGCAAAAAGTCTCTTGAGAATATTGTCACGTGGT
16490886 TTTTTCATGTGGATGGTTCTACAAGAAAGTTGGGTTCTAAAGTAGGTATCTCGTTAGTTTATCTG
456 TTTTTCATGTGGATGGTTCTACAAGAAAGTTGGGTTCTAAAGTAGGTATCTCGTTAGTTTATCTG
16490951 AATGATAACGAGTGGGAGGATGGTCTATCTTTTTCTTTTATGGCTTCTAATAATGTTATTGAAAT
521 AATGATAACGAGTGGGAGGATGGTCTATCTTTTTCTTTTATGGCTTCTAATAATGTTATTGAAAT
* *
16491016 ATGAAGCAATGGTGGATGGTTTGGAACTTGCACAGAAATTGAAAGTTCAAAAGCTTCATGTTTAC
586 ATGAAGCAATGGTGGATGGTTTAGAACTTGCATAGAAATTGAAAGTTCAAAAGCTTCATGTTTAC
16491081 ATCGATTCCCAATTTATGGTAAAGTAGATCCAAAGAGAGTATGAAGTTAAAGATCCCATTTTAGC
651 ATCGATTCCCAATTTATGGTAAAGTAGATCCAAAGAGAGTATGAAGTTAAAGATCCCATTTTAGC
16491146 TAAATGCTACTCCATGGTGATGAAGATATTGCAAGGTTTCCTAGAAGTCCTAGTTGACAAGGTTC
716 TAAATGCTACTCCATGGTGATGAAGATATTGCAAGGTTTCCTAGAAGTCCTAGTTGACAAGGTTC
16491211 CTTGATTTGGAAACATAAAGGTTGATTCTTTGTCCCGAGTTGCATCCGCAGTAGGA
781 CTTGATTTGGAAACATAAAGGTTGATTCTTTGTCCCGAGTTGCATCCGCAGTAGGA
16491267 ATTTG
1 ATTTG
16491272 AGAAAAGGGC
Statistics
Matches: 1669, Mismatches: 6, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
835 833 0.50
836 836 0.50
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (836 bp):
ATTTGTTGTTAGTATCATTGCTTCTAGATGACACTCTAAATGTTTATTTGGAAATTTCGAATGGG
ACAGTAACCACCATATTAATAAAAGAGGTGGAAGGCCAACAACATCCTTTATATTATGCGAGTAA
GGTACTCTAAAAAAGTGAACTGAGGTACCCTAAGCTAGAGAAGATTATTTTTTCCTTGGTGATAG
TTGCCAAAAAGCTTCACCCGTATTTCCAAGCCTATTTGGTCATCATTTTGTTAGACCTGTCGTTG
TGAGAAATTCTAGGAAAGATTGATGCCTCTGGTCACATGGTGAAATAGAGTGTAAAACTCAAAGA
GTGGAATTCATTGTCGGATGTTCTTTTGCTCATTATATAGAGTCAAAACATTGTAGTAAACCCTT
CGAAAGCTCAAGAAACTATTGCAGAACCTTTCGCAAAAAGTCTCTTGAGAATATTGTCACGTGGT
TTTTTCATGTGGATGGTTCTACAAGAAAGTTGGGTTCTAAAGTAGGTATCTCGTTAGTTTATCTG
AATGATAACGAGTGGGAGGATGGTCTATCTTTTTCTTTTATGGCTTCTAATAATGTTATTGAAAT
ATGAAGCAATGGTGGATGGTTTAGAACTTGCATAGAAATTGAAAGTTCAAAAGCTTCATGTTTAC
ATCGATTCCCAATTTATGGTAAAGTAGATCCAAAGAGAGTATGAAGTTAAAGATCCCATTTTAGC
TAAATGCTACTCCATGGTGATGAAGATATTGCAAGGTTTCCTAGAAGTCCTAGTTGACAAGGTTC
CTTGATTTGGAAACATAAAGGTTGATTCTTTGTCCCGAGTTGCATCCGCAGTAGGA
Found at i:16495191 original size:22 final size:23
Alignment explanation
Indices: 16495166--16495209 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
16495156 GAAGGTGACG
16495166 ATTTTGGTTT-TTCTTT-TTTCCA
1 ATTTT-GTTTCTTCTTTCTTTCCA
*
16495188 ATTTTTTTTCTTCTTTCTTTCC
1 ATTTTGTTTCTTCTTTCTTTCC
16495210 CTTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 11 0.58
23 5 0.26
ACGTcount: A:0.07, C:0.18, G:0.05, T:0.70
Consensus pattern (23 bp):
ATTTTGTTTCTTCTTTCTTTCCA
Found at i:16495214 original size:22 final size:23
Alignment explanation
Indices: 16495176--16495219 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
16495166 ATTTTGGTTT
16495176 TTCTTTTTTCCAATTTT-TTTTC
1 TTCTTTTTTCCAATTTTATTTTC
*
16495198 TTCTTTCTTTCC-CTTTTATTTT
1 TTCTTT-TTTCCAATTTTATTTT
16495220 TCCTTGTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (23 bp):
TTCTTTTTTCCAATTTTATTTTC
Found at i:16496087 original size:10 final size:9
Alignment explanation
Indices: 16496050--16496105 Score: 53
Period size: 10 Copynumber: 6.2 Consensus size: 9
16496040 TTTATTAATG
*
16496050 TATTTTGTT
1 TATTTTATT
*
16496059 TATATT-TT
1 TATTTTATT
16496067 TATTTTATT
1 TATTTTATT
16496076 TATTTGTATT
1 TATTT-TATT
*
16496086 TATTTCTATA
1 TATTT-TATT
16496096 TATTTT-TT
1 TATTTTATT
16496104 TA
1 TA
16496106 GATACCTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
8 10 0.25
9 13 0.32
10 17 0.43
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (9 bp):
TATTTTATT
Found at i:16497491 original size:16 final size:16
Alignment explanation
Indices: 16497470--16497504 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
16497460 TTGTGTTTTG
16497470 TTTTGAATGCATGACA
1 TTTTGAATGCATGACA
* *
16497486 TTTTGACTGCATGGCA
1 TTTTGAATGCATGACA
16497502 TTT
1 TTT
16497505 CATTATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (16 bp):
TTTTGAATGCATGACA
Found at i:16500065 original size:10 final size:12
Alignment explanation
Indices: 16500034--16500060 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
16500024 TATTCATAAA
16500034 TTTGTATATTCT
1 TTTGTATATTCT
16500046 TTTGTATATTCT
1 TTTGTATATTCT
16500058 TTT
1 TTT
16500061 ATATTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTGTATATTCT
Found at i:16500768 original size:8 final size:8
Alignment explanation
Indices: 16500757--16500810 Score: 55
Period size: 8 Copynumber: 7.2 Consensus size: 8
16500747 TCTAAAAAAC
16500757 AAAATCAA
1 AAAATCAA
16500765 AAAATC-A
1 AAAATCAA
*
16500772 AAAATAAAA
1 AAAAT-CAA
16500781 AAAATC--
1 AAAATCAA
16500787 AAAATC--
1 AAAATCAA
16500793 AAAATCAA
1 AAAATCAA
16500801 AAAATCAA
1 AAAATCAA
16500809 AA
1 AA
16500811 TTGTAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 12 0.30
7 6 0.15
8 16 0.40
9 6 0.15
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAATCAA
Found at i:16500791 original size:22 final size:20
Alignment explanation
Indices: 16500743--16500811 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 20
16500733 CAATCAAAGA
*
16500743 AAAATCTAAAA-AACAAAATC
1 AAAATC-AAAATAAAAAAATC
16500763 AAAAAATCAAAAATAAAAAAAATC
1 --AAAATC-AAAAT-AAAAAAATC
*
16500787 AAAATCAAAATCAAAAAATC
1 AAAATCAAAATAAAAAAATC
16500807 AAAAT
1 AAAAT
16500812 TGTAAAATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
20 13 0.31
21 5 0.12
22 16 0.38
24 8 0.19
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAATCAAAATAAAAAAATC
Found at i:16500819 original size:14 final size:14
Alignment explanation
Indices: 16500743--16500811 Score: 71
Period size: 14 Copynumber: 5.4 Consensus size: 14
16500733 CAATCAAAGA
16500743 AAAATCTAAAAAA-C
1 AAAATC-AAAAAATC
16500757 AAAATCAAAAAATC
1 AAAATCAAAAAATC
*
16500771 AAAA--ATAAAA--
1 AAAATCAAAAAATC
16500781 AAAATC--AAAATC
1 AAAATCAAAAAATC
16500793 AAAATCAAAAAATC
1 AAAATCAAAAAATC
16500807 AAAAT
1 AAAAT
16500812 TGTAAAATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
10 8 0.17
12 11 0.23
13 6 0.13
14 22 0.47
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAATCAAAAAATC
Found at i:16500842 original size:6 final size:6
Alignment explanation
Indices: 16500831--16500865 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
16500821 AGAATGATGA
*
16500831 AAAAAG AAAAAG AAAAAG GAAAAG AAAGAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAA-AAG AAAA
16500866 GGAGAGGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:16502247 original size:88 final size:88
Alignment explanation
Indices: 16502135--16502625 Score: 752
Period size: 88 Copynumber: 5.6 Consensus size: 88
16502125 CGGAGCAGAC
* * *
16502135 TGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATC-AAAAGTACCAGCCTTGTC
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGA-TACCAGCCTTGTC
*
16502199 CCCCTGGGCAGTAGTGGAGTAGGT
65 TCCCTGGGCAGTAGTGGAGTAGGT
* *
16502223 TGAAAATAACAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATC-AAAAGTACCAGCCTTGTC
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGA-TACCAGCCTTGTC
*
16502287 GCCCTGGGCAGTAGTGGAGTAGGT
65 TCCCTGGGCAGTAGTGGAGTAGGT
16502311 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGATACCAGCCTTGTCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGATACCAGCCTTGTCT
*
16502376 CCCAGGGCAGTAGTGGAGTAGGT
66 CCCTGGGCAGTAGTGGAGTAGGT
* *
16502399 TGAAAATAGCAGATCTTGCCTTCCTGTACTAACAGAGAAGCAGATCGAAGATACTAGCCTTGTCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGATACCAGCCTTGTCT
* *
16502464 CCCTGGGCAGTAATAGAGTAGGT
66 CCCTGGGCAGTAGTGGAGTAGGT
* * *
16502487 TGAAAATAACAGATCTTGCCTTCCTGTACTGACAGAAAAGCAGATCGAAGATACTAGCCTTGTCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGATACCAGCCTTGTCT
* *
16502552 CCCTGGGCAGCAGTTGAGTAGGT
66 CCCTGGGCAGTAGTGGAGTAGGT
* * * * *
16502575 CGAAAATGGCAGATCTTGCTTTCCTGTACTGGCAGCGAAGCAGATCGAAGA
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGA
16502626 CATCAGTCTT
Statistics
Matches: 376, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
88 373 0.99
89 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (88 bp):
TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGAGAAGCAGATCGAAGATACCAGCCTTGTCT
CCCTGGGCAGTAGTGGAGTAGGT
Found at i:16502901 original size:50 final size:49
Alignment explanation
Indices: 16502819--16503002 Score: 129
Period size: 50 Copynumber: 3.7 Consensus size: 49
16502809 TTAGCATTAC
* * * *
16502819 AGTGGAAAAGATTGAAGCCACAATGACAGATCTTACTCCCCTAGCGGTGT
1 AGTGGAAAAGATTGAAGCCACGACGGCGGATCTTACT-CCCTAGCGGTGT
* * ** ** * ** *
16502869 AGTGGAACAGATTGAAGTCACGACGGCGGATC-TGGTTTCTTGACATTGCA
1 AGTGGAAAAGATTGAAGCCACGACGGCGGATCTTACTCCCTAG-CGGTG-T
* * *
16502919 ATTTGAAAAGATTGAAGCCA-GAACGGCGGATCTTACTTCCCTGGCGGTGT
1 AGTGGAAAAGATTGAAGCCACG-ACGGCGGATCTTAC-TCCCTAGCGGTGT
* * *
16502969 AGTGGAATAGATTGAAGTCACGACGGCGAATCTT
1 AGTGGAAAAGATTGAAGCCACGACGGCGGATCTT
16503003 GTTTCCTCGA
Statistics
Matches: 97, Mismatches: 31, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
48 3 0.03
49 6 0.06
50 79 0.81
51 5 0.05
52 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGGAAAAGATTGAAGCCACGACGGCGGATCTTACTCCCTAGCGGTGT
Found at i:16502951 original size:100 final size:101
Alignment explanation
Indices: 16502823--16503019 Score: 297
Period size: 100 Copynumber: 2.0 Consensus size: 101
16502813 CATTACAGTG
*
16502823 GAAAAGATTGAAGCCACAATGACAGATCTTACTCCCCTAGCGGTGTAGTGGAACAGATTGAAGTC
1 GAAAAGATTGAAGCCACAACGACAGATCTTACTCCCCTAGCGGTGTAGTGGAACAGATTGAAGTC
* *
16502888 ACGACGGCGGATCTGGTTT-CTTGACATTGCAATTT
66 ACGACGGCGAATCTGGTTTCCTCGACATTGCAATTT
* * * * * *
16502923 GAAAAGATTGAAGCCAGAACGGCGGATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAGTC
1 GAAAAGATTGAAGCCACAACGACAGATCTTACTCCCCTAGCGGTGTAGTGGAACAGATTGAAGTC
*
16502988 ACGACGGCGAATCTTGTTTCCTCGACATTGCA
66 ACGACGGCGAATCTGGTTTCCTCGACATTGCA
16503020 GTTAAACAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 75 0.87
101 11 0.13
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (101 bp):
GAAAAGATTGAAGCCACAACGACAGATCTTACTCCCCTAGCGGTGTAGTGGAACAGATTGAAGTC
ACGACGGCGAATCTGGTTTCCTCGACATTGCAATTT
Done.