Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 63 of 216
Found at i:18815936 original size:30 final size:31
Alignment explanation
Indices: 18815896--18815953 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
18815886 ATATTTTATA
*
18815896 TAAATTTTTATATA-TTTTCTTT-TAAAATTT
1 TAAATATTTATATACTTTT-TTTATAAAATTT
18815926 TAAATATTTATATACTTTTTTTATAAAA
1 TAAATATTTATATACTTTTTTTATAAAA
18815954 ATAGATTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (31 bp):
TAAATATTTATATACTTTTTTTATAAAATTT
Found at i:18820088 original size:45 final size:45
Alignment explanation
Indices: 18820021--18820146 Score: 126
Period size: 45 Copynumber: 2.8 Consensus size: 45
18820011 GCAATATTTG
* *
18820021 TTGTGTATCCACAACTAAAGGCATATTCCATCTACAAGTTATCTA
1 TTGTGTATCCACAGCCAAAGGCATATTCCATCTACAAGTTATCTA
* * * *** *
18820066 TTGTGTATCCACAGCCAGAGGCAGATTCTATCTGTGAGTTATTTA
1 TTGTGTATCCACAGCCAAAGGCATATTCCATCTACAAGTTATCTA
* * * *
18820111 CTATGAAATCCACAGCCAAAGGCATATTTCATCTAC
1 TTGTG-TATCCACAGCCAAAGGCATATTCCATCTAC
18820147 TAGATTGTGT
Statistics
Matches: 62, Mismatches: 18, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
45 39 0.63
46 23 0.37
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (45 bp):
TTGTGTATCCACAGCCAAAGGCATATTCCATCTACAAGTTATCTA
Found at i:18836276 original size:17 final size:18
Alignment explanation
Indices: 18836250--18836289 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
18836240 ATAATTAAAA
18836250 AAATTAGAAATTAAATT-
1 AAATTAGAAATTAAATTC
*
18836267 AAATTGGAAATTAAATTC
1 AAATTAGAAATTAAATTC
18836285 AAATT
1 AAATT
18836290 TTGTAATCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (18 bp):
AAATTAGAAATTAAATTC
Found at i:18837514 original size:4 final size:4
Alignment explanation
Indices: 18837505--18837538 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
18837495 TAACTTGAGC
*
18837505 TTTA TTTA TTTT TTTA TTTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA T
18837539 GTACAAGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:18837527 original size:17 final size:17
Alignment explanation
Indices: 18837505--18837538 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18837495 TAACTTGAGC
*
18837505 TTTATTTATTTTTTTAT
1 TTTATTTATTTATTTAT
18837522 TTTATTTATTTATTTAT
1 TTTATTTATTTATTTAT
18837539 GTACAAGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTATTTATTTATTTAT
Found at i:18862191 original size:27 final size:26
Alignment explanation
Indices: 18862141--18862191 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
18862131 ATTATAAATT
* *
18862141 AAAAAAATAACTATTTATTTTATAAA
1 AAAAAAATAACTATTAATTATATAAA
*
18862167 AAAAAATATAACTGTTAATTATATA
1 AAAAAA-ATAACTATTAATTATATA
18862192 TTAATATAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (26 bp):
AAAAAAATAACTATTAATTATATAAA
Found at i:18863231 original size:16 final size:16
Alignment explanation
Indices: 18863194--18863235 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
18863184 ATTTTTAAAA
*
18863194 TATTTTTAAATTTATT
1 TATTTTAAAATTTATT
*
18863210 TTTTTTAAAGATTT-TT
1 TATTTTAAA-ATTTATT
18863226 TATTTTAAAA
1 TATTTTAAAA
18863236 AATTATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 1 0.05
16 17 0.77
17 4 0.18
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (16 bp):
TATTTTAAAATTTATT
Found at i:18863232 original size:25 final size:25
Alignment explanation
Indices: 18863178--18863232 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
18863168 ATTTTGGAAT
*
18863178 TTTTATATTTTTAAAATATTTTTAA
1 TTTTATATTTTTAAAAGATTTTTAA
* * * *
18863203 ATTTATTTTTTTTAAAGATTTTTTA
1 TTTTATATTTTTAAAAGATTTTTAA
18863228 TTTTA
1 TTTTA
18863233 AAAAATTATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTATATTTTTAAAAGATTTTTAA
Found at i:18864351 original size:10 final size:9
Alignment explanation
Indices: 18864328--18864352 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
18864318 CTACAAGAAT
18864328 ATTTTTGAC
1 ATTTTTGAC
18864337 ATTTTTGAC
1 ATTTTTGAC
18864346 ATTTTTG
1 ATTTTTG
18864353 TATATGTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.08, G:0.12, T:0.60
Consensus pattern (9 bp):
ATTTTTGAC
Found at i:18889679 original size:38 final size:38
Alignment explanation
Indices: 18889637--18889714 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
18889627 CTGCGATAAT
18889637 GTGATGATTCCTGACAATTAAAAATGTCTTTTTGTATA
1 GTGATGATTCCTGACAATTAAAAATGTCTTTTTGTATA
* * *
18889675 GTGATGATTCTTGACAATTAGAAATGTGTTTTTGTATA
1 GTGATGATTCCTGACAATTAAAAATGTCTTTTTGTATA
18889713 GT
1 GT
18889715 AAATGGATCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (38 bp):
GTGATGATTCCTGACAATTAAAAATGTCTTTTTGTATA
Found at i:18890349 original size:30 final size:31
Alignment explanation
Indices: 18890310--18890368 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
18890300 AGTGATAGAG
*
18890310 ACAGAATATGAGCGGGAATTTGTGAGACTCA
1 ACAGAATATGACCGGGAATTTGTGAGACTCA
*
18890341 ACAG-ATATGCCCGGGAATTTGTGAGACT
1 ACAGAATATGACCGGGAATTTGTGAGACT
18890369 GAAGCTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (31 bp):
ACAGAATATGACCGGGAATTTGTGAGACTCA
Found at i:18905398 original size:74 final size:76
Alignment explanation
Indices: 18905269--18905415 Score: 235
Period size: 74 Copynumber: 2.0 Consensus size: 76
18905259 ATGGAAATTA
* *
18905269 ATATTCTTTTGGAAAAAAATATAATTCATTTTTCTAACTTTACATTTTCCTTCTCTATTAATAAT
1 ATATTCTTTTGGAAAAAAATATAATTCATTTTTCTAACTTTACATTTGCCTTCTCTATTAATAAG
18905334 GGAATAATCCT
66 GGAATAATCCT
* * *
18905345 ATATTCTTTTGG-AAAGAATATAATTTATTTTT-TAACTTTCCATTTGCCTTCTCTATTAATAAG
1 ATATTCTTTTGGAAAAAAATATAATTCATTTTTCTAACTTTACATTTGCCTTCTCTATTAATAAG
18905408 GGAATAAT
66 GGAATAAT
18905416 ATTGGTTTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 36 0.55
75 18 0.27
76 12 0.18
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.46
Consensus pattern (76 bp):
ATATTCTTTTGGAAAAAAATATAATTCATTTTTCTAACTTTACATTTGCCTTCTCTATTAATAAG
GGAATAATCCT
Found at i:18907036 original size:18 final size:18
Alignment explanation
Indices: 18906986--18907130 Score: 100
Period size: 18 Copynumber: 8.3 Consensus size: 18
18906976 GTTCAAACAT
*
18906986 AACATA-GTTCGCAT-AT
1 AACATAGGTTCGCATAAC
* * *
18907002 AGCATATGTTTGCATAAC
1 AACATAGGTTCGCATAAC
*
18907020 AACAAAGGTTCGCATAAC
1 AACATAGGTTCGCATAAC
* * * *
18907038 ATCATGGGTTCGC-TTAT
1 AACATAGGTTCGCATAAC
*
18907055 AACATAGGTTCACATAAC
1 AACATAGGTTCGCATAAC
* *
18907073 AACATAAGTTCGCAT-AT
1 AACATAGGTTCGCATAAC
* * * *
18907090 AGCACAGGTCCACATAAC
1 AACATAGGTTCGCATAAC
* *
18907108 AACATGGGTTTGCATAAC
1 AACATAGGTTCGCATAAC
18907126 AACAT
1 AACAT
18907131 GAGTTCACAC
Statistics
Matches: 93, Mismatches: 32, Indels: 6
0.71 0.24 0.05
Matches are distributed among these distances:
16 5 0.05
17 30 0.32
18 58 0.62
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (18 bp):
AACATAGGTTCGCATAAC
Found at i:18907064 original size:35 final size:35
Alignment explanation
Indices: 18907020--18907123 Score: 118
Period size: 35 Copynumber: 3.0 Consensus size: 35
18907010 TTTGCATAAC
* * *
18907020 AACAAAGGTTCGCATAACATCATGGGTTCGCTTAT
1 AACAAAGGTTCACATAACAACATGGGTTCGCATAT
* **
18907055 AACATAGGTTCACATAACAACATAAGTTCGCATAT
1 AACAAAGGTTCACATAACAACATGGGTTCGCATAT
* * * *
18907090 AGCACAGGTCCACATAACAACATGGGTTTGCATA
1 AACAAAGGTTCACATAACAACATGGGTTCGCATA
18907124 ACAACATGAG
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (35 bp):
AACAAAGGTTCACATAACAACATGGGTTCGCATAT
Found at i:18917861 original size:18 final size:19
Alignment explanation
Indices: 18917838--18917878 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
18917828 TTCTTGTCGA
18917838 AAAATAATTAAA-TATTAT
1 AAAATAATTAAATTATTAT
*
18917856 AAAATAATTAAATTATTTT
1 AAAATAATTAAATTATTAT
18917875 AAAA
1 AAAA
18917879 ATATGAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATAATTAAATTATTAT
Found at i:18919426 original size:16 final size:16
Alignment explanation
Indices: 18919403--18919444 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
18919393 CGTTTGGTTC
18919403 GCTGTAATAGAATAGA
1 GCTGTAATAGAATAGA
* *
18919419 GGTGTAATGGAATAGA
1 GCTGTAATAGAATAGA
18919435 GCTGTAATAG
1 GCTGTAATAG
18919445 TAATTCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.26
Consensus pattern (16 bp):
GCTGTAATAGAATAGA
Found at i:18919514 original size:44 final size:45
Alignment explanation
Indices: 18919424--18919517 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 45
18919414 ATAGAGGTGT
* *
18919424 AATGGAATAGAGCTGTAATAGTAATTCAATTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATAGTAATTCAATTGTTTGGTTGAATGG
*
18919469 AATGAAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
18919513 AATGA
1 AATGA
18919518 TGTTGTAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 24 0.53
45 20 0.44
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (45 bp):
AATGAAATAGAACTGTAATAGTAATTCAATTGTTTGGTTGAATGG
Found at i:18919525 original size:39 final size:40
Alignment explanation
Indices: 18919424--18919528 Score: 108
Period size: 44 Copynumber: 2.5 Consensus size: 40
18919414 ATAGAGGTGT
18919424 AATGGAATAGA-GCTGTAATAGTAATTCAATTGTTTGGTTG
1 AATGGAAT-GATGCTGTAATAGTAATTCAATTGTTTGGTTG
*
18919464 AATGGAATGAAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTG
1 AATGGAATG--AT-G--CTGTAATAGTAATTCAAT-TGTTTGGTTG
*
18919508 AATGGAATGATGTTGTAATAG
1 AATGGAATGATGCTGTAATAG
18919529 CATAAGGAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 15
0.77 0.03 0.21
Matches are distributed among these distances:
39 9 0.16
40 8 0.14
41 2 0.04
42 2 0.04
43 2 0.04
44 23 0.41
45 10 0.18
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (40 bp):
AATGGAATGATGCTGTAATAGTAATTCAATTGTTTGGTTG
Found at i:18920759 original size:21 final size:19
Alignment explanation
Indices: 18920713--18920749 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
18920703 ATAAATTGAA
*
18920713 ATATTCAAAATAAAAAAAT
1 ATATTAAAAATAAAAAAAT
18920732 ATATTAAAAATAAAAAAA
1 ATATTAAAAATAAAAAAA
18920750 ATTAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (19 bp):
ATATTAAAAATAAAAAAAT
Found at i:18937761 original size:18 final size:17
Alignment explanation
Indices: 18937735--18937768 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18937725 AAGAAAAAGA
18937735 ATATAAGTTTGGTAATTG
1 ATATAAG-TTGGTAATTG
*
18937753 ATATTAGTTGGTAATT
1 ATATAAGTTGGTAATT
18937769 CATTTTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (17 bp):
ATATAAGTTGGTAATTG
Found at i:18938133 original size:26 final size:26
Alignment explanation
Indices: 18938104--18938154 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18938094 TAATTAAAAA
* *
18938104 ATATTATTTTAATAAACTAAACAAAC
1 ATATAATTATAATAAACTAAACAAAC
18938130 ATATAATTATAATAAACTAAACAAA
1 ATATAATTATAATAAACTAAACAAA
18938155 AATGCATGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (26 bp):
ATATAATTATAATAAACTAAACAAAC
Found at i:18943980 original size:21 final size:21
Alignment explanation
Indices: 18943919--18943980 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
18943909 ATTCGAGACT
*
18943919 AATTTAAAAATGATTTAAAAATC
1 AATTT-AAAAT-ATTTAAAAATA
* * **
18943942 TATTAAAAATATGGAAAAATA
1 AATTTAAAATATTTAAAAATA
18943963 AATTTAAAATATTTAAAA
1 AATTTAAAATATTTAAAA
18943981 TTACCCTAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 22 0.73
22 5 0.17
23 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (21 bp):
AATTTAAAATATTTAAAAATA
Found at i:18949775 original size:21 final size:21
Alignment explanation
Indices: 18949751--18949792 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
18949741 TATTTAATGG
18949751 TTATATTTAA-ATATTTAAAAT
1 TTATATTTAATATA-TTAAAAT
*
18949772 TTATATTTCATATATTAAAAT
1 TTATATTTAATATATTAAAAT
18949793 ATTAACAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATATTTAATATATTAAAAT
Found at i:18977442 original size:52 final size:51
Alignment explanation
Indices: 18977335--18977443 Score: 136
Period size: 50 Copynumber: 2.1 Consensus size: 51
18977325 TTTGTTAGCT
*
18977335 TGTGTGAACATTACCCTCCCATATATCCGAAGTCAATTTGAGTTGATTGTGG
1 TGTGTGAACATTACCCTCCCATATATCCCAAGT-AATTTGAGTTGATTGTGG
*
18977387 TGTGTGAACATTACCCTCCCA-A-ATCCTAACAAGT-ATTTG-GTTGGTTGTGG
1 TGTGTGAACATTACCCTCCCATATATCC---CAAGTAATTTGAGTTGATTGTGG
18977437 TGTGTGA
1 TGTGTGA
18977444 TGGTAAATGC
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
50 21 0.40
51 6 0.12
52 21 0.40
53 4 0.08
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (51 bp):
TGTGTGAACATTACCCTCCCATATATCCCAAGTAATTTGAGTTGATTGTGG
Found at i:18985076 original size:20 final size:20
Alignment explanation
Indices: 18985031--18985080 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
18985021 TATTTATTTT
* *
18985031 AATTACTTTTACTTTTATTA
1 AATTAATTTTACTTTTATAA
*
18985051 ATTTAATTTTAC-TTTATCAA
1 AATTAATTTTACTTTTAT-AA
18985071 AATTAATTTT
1 AATTAATTTT
18985081 CTCAAAAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (20 bp):
AATTAATTTTACTTTTATAA
Found at i:18988124 original size:34 final size:33
Alignment explanation
Indices: 18988083--18988156 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 33
18988073 GAATGAGGCA
18988083 TAAATAAAAAA-AGGAAACAAG-AATAAAATAAAA-
1 TAAATAAAAAATA--AAACAAGAAAT-AAATAAAAC
18988116 TAGAATAAAAAATAAAACAAGAAATAAATAAAAC
1 TA-AATAAAAAATAAAACAAGAAATAAATAAAAC
18988150 TAAATAA
1 TAAATAA
18988157 GAAGAAATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
33 22 0.59
34 14 0.38
35 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.15
Consensus pattern (33 bp):
TAAATAAAAAATAAAACAAGAAATAAATAAAAC
Found at i:18989368 original size:21 final size:21
Alignment explanation
Indices: 18989338--18989455 Score: 76
Period size: 21 Copynumber: 5.5 Consensus size: 21
18989328 TGCTAGTACA
* *
18989338 GTGTAAATAAACCACTCATTG
1 GTGTAGATAAACCACTCAATG
* *
18989359 GTGTAGATAAAAACTACTACACT-
1 GTGTAGAT--AAACCACT-CAATG
* * * *
18989382 ATATGGATAAACCACTCAACG
1 GTGTAGATAAACCACTCAATG
* **
18989403 ATGTAGATAAACTGCTCAAATG
1 GTGTAGATAAACCACTC-AATG
*
18989425 GTGTGGATAAACCACTCAATG
1 GTGTAGATAAACCACTCAATG
*
18989446 GTGCAGATAA
1 GTGTAGATAA
18989456 TTTGTTCACA
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
20 2 0.03
21 39 0.54
22 16 0.22
23 12 0.17
24 3 0.04
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.25
Consensus pattern (21 bp):
GTGTAGATAAACCACTCAATG
Found at i:18990048 original size:35 final size:35
Alignment explanation
Indices: 18990009--18990078 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
18989999 TAATTTCTAA
18990009 TTAACATTACTTAAGCATAATCAGATTCTTGAAGT
1 TTAACATTACTTAAGCATAATCAGATTCTTGAAGT
18990044 TTAACATTACTTAAGCATAATCAGATTCTTGAAGT
1 TTAACATTACTTAAGCATAATCAGATTCTTGAAGT
18990079 ACTTACTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (35 bp):
TTAACATTACTTAAGCATAATCAGATTCTTGAAGT
Found at i:18996419 original size:44 final size:43
Alignment explanation
Indices: 18996349--18996682 Score: 157
Period size: 44 Copynumber: 7.7 Consensus size: 43
18996339 ACTGGAGGCG
* * * *
18996349 ATCTGCT-CTCTGTAACTTTAGAGAGATAAAATATGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAAATAT-TGGTTTTA
* * * *
18996392 ATCTGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA-AAATATTGGTTTTA
* * * * *
18996436 ATCTGCTCCACTGCCACTTTAGGGAGATAAGAT-TTGCCATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAAATATTG--GT-TTTA
* * * *
18996481 GTCTGC-CTCACTGCAACTTCA-GGAGGATAAGA-CTTGCTTACTTA
1 ATCTGCTC-CACTGCAACTTCAGGGA-GATAAAATATTGGTT--TTA
* * * ***
18996525 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA---GATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAA-AATATTGGTTTTA
* * ** * **
18996566 ATCTGCT-CTCTACAACTTCAGAAAGATAAGATCCA-AAGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAAAT--ATTGGTTTTA
* * * * *
18996609 ATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA-AAATATTGGTTTTA
*
18996653 ATCTGCTCCACTGCAACTTTAGGGAGATAA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAA
18996683 GGTTCGCCAT
Statistics
Matches: 215, Mismatches: 55, Indels: 42
0.69 0.18 0.13
Matches are distributed among these distances:
39 1 0.00
40 18 0.08
41 7 0.03
42 4 0.02
43 19 0.09
44 128 0.60
45 38 0.18
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAAATATTGGTTTTA
Found at i:18997332 original size:88 final size:89
Alignment explanation
Indices: 18997205--18997422 Score: 271
Period size: 88 Copynumber: 2.5 Consensus size: 89
18997195 AACTGATGTC
* *
18997205 TTCGATCTGCTTCACTGCCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTACT-
1 TTCGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACT-CTA
**
18997269 GTTCAAGGAGACAAGGCTGGAGT-T
65 GCCCAAGGAGACAAGGCTGGAGTCT
* * * * ** *
18997293 TTCGATCTGCTTTGCTACCGGTACAGGAAGGCAAAATCTGCTATTTTTAACCTGTTCCACTGTAG
1 TTCGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTCTAG
* * *
18997358 CCCAGGGAGGCAAGGCTGGTGTCT
66 CCCAAGGAGACAAGGCTGGAGTCT
*
18997382 TT-GATCTGCTTCGCTGTCGGTACAGGAAGGCAAGATCTGCT
1 TTCGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCT
18997423 GTCTTCATTG
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
87 1 0.01
88 106 0.96
89 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (89 bp):
TTCGATCTGCTTCGCTGCCGGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTCTAG
CCCAAGGAGACAAGGCTGGAGTCT
Found at i:19000518 original size:17 final size:17
Alignment explanation
Indices: 19000496--19000530 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
19000486 AGAGCGGTGG
19000496 CTAAACTTGAACAGTGA
1 CTAAACTTGAACAGTGA
*
19000513 CTAAACTTGAACGGTGA
1 CTAAACTTGAACAGTGA
19000530 C
1 C
19000531 CTCCCTCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (17 bp):
CTAAACTTGAACAGTGA
Found at i:19010498 original size:17 final size:17
Alignment explanation
Indices: 19010468--19010525 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
19010458 AATATATGAT
19010468 TTGAACATGA-AATGAAA
1 TTGAA-ATGAGAATGAAA
*
19010485 TTGAAATGAGAATGATA
1 TTGAAATGAGAATGAAA
19010502 -TGAAAATG-GAATTG-AA
1 TTG-AAATGAGAA-TGAAA
19010518 TTGAAATG
1 TTGAAATG
19010526 GATCATGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 15 0.43
17 20 0.57
ACGTcount: A:0.48, C:0.02, G:0.22, T:0.28
Consensus pattern (17 bp):
TTGAAATGAGAATGAAA
Found at i:19010515 original size:28 final size:29
Alignment explanation
Indices: 19010473--19010535 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
19010463 ATGATTTGAA
19010473 CATG-AAATGAAATTGAAATGAGAAT-GAT
1 CATGAAAATGAAATTGAAATGA-AATGGAT
* *
19010501 -ATGAAAATGGAATTGAATTGAAATGGAT
1 CATGAAAATGAAATTGAAATGAAATGGAT
19010529 CATGAAA
1 CATGAAA
19010536 CTTGGTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 6 0.20
28 18 0.60
29 6 0.20
ACGTcount: A:0.49, C:0.03, G:0.22, T:0.25
Consensus pattern (29 bp):
CATGAAAATGAAATTGAAATGAAATGGAT
Found at i:19010526 original size:16 final size:15
Alignment explanation
Indices: 19010463--19010527 Score: 51
Period size: 17 Copynumber: 4.0 Consensus size: 15
19010453 TAGGCAATAT
* *
19010463 ATGATTTGAACATGAA
1 ATGAATTGAA-ATGGA
19010479 ATGAAATTGAAATGAGA
1 ATG-AATTGAAATG-GA
19010496 ATG-ATATGAAAATGGA
1 ATGAAT-TG-AAATGGA
19010512 ATTGAATTGAAATGGA
1 A-TGAATTGAAATGGA
19010528 TCATGAAACT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
15 2 0.05
16 18 0.44
17 19 0.46
18 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.23, T:0.28
Consensus pattern (15 bp):
ATGAATTGAAATGGA
Found at i:19013889 original size:11 final size:12
Alignment explanation
Indices: 19013861--19013888 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
19013851 CTGTTTATAA
19013861 TTTTTAACAATT
1 TTTTTAACAATT
19013873 TTTTTAACAATT
1 TTTTTAACAATT
19013885 TTTT
1 TTTT
19013889 ATAATTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTTTAACAATT
Found at i:19015614 original size:8 final size:8
Alignment explanation
Indices: 19015601--19015626 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
19015591 ATTCGGATGC
19015601 TTGTGAAA
1 TTGTGAAA
19015609 TTGTGAAA
1 TTGTGAAA
19015617 TTGTGAAA
1 TTGTGAAA
19015625 TT
1 TT
19015627 AAGAACATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (8 bp):
TTGTGAAA
Found at i:19026511 original size:39 final size:39
Alignment explanation
Indices: 19026390--19026520 Score: 147
Period size: 39 Copynumber: 3.4 Consensus size: 39
19026380 TTATGGGCTC
* * *
19026390 ACATGCCCGTGTGGGCCCACACAGCCTAGCCCAACACCT
1 ACATGCTCGTGTGGGCCCACACGGCCTGGCCCAACACCT
* * * * * *
19026429 AAATCCCCATGTGGGCCAACACGGCCTGACCCAACA-CT
1 ACATGCTCGTGTGGGCCCACACGGCCTGGCCCAACACCT
* *
19026467 AACATGCTTGTGTGGGCCCACACGGACTGGCCCAACACCT
1 -ACATGCTCGTGTGGGCCCACACGGCCTGGCCCAACACCT
19026507 ACATGCTCGTGTGG
1 ACATGCTCGTGTGG
19026521 TATGTCCGTG
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
38 2 0.03
39 70 0.95
40 2 0.03
ACGTcount: A:0.24, C:0.37, G:0.23, T:0.16
Consensus pattern (39 bp):
ACATGCTCGTGTGGGCCCACACGGCCTGGCCCAACACCT
Found at i:19036957 original size:16 final size:16
Alignment explanation
Indices: 19036936--19036966 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19036926 ATATGTACGC
*
19036936 TTGTGAAATTGTGAAG
1 TTGTGAAATTATGAAG
19036952 TTGTGAAATTATGAA
1 TTGTGAAATTATGAA
19036967 CATACATGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (16 bp):
TTGTGAAATTATGAAG
Found at i:19040088 original size:22 final size:22
Alignment explanation
Indices: 19040050--19040107 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
19040040 ATTTCTCCGA
* *
19040050 ATCAGATACAAAAGTAGAAAAT
1 ATCAGATACAGATGTAGAAAAT
* *
19040072 ATCAGATACAGATGTAGGACAT
1 ATCAGATACAGATGTAGAAAAT
* *
19040094 ATTAGATATAGATG
1 ATCAGATACAGATG
19040108 CAAATTCCTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.48, C:0.09, G:0.19, T:0.24
Consensus pattern (22 bp):
ATCAGATACAGATGTAGAAAAT
Found at i:19043212 original size:22 final size:23
Alignment explanation
Indices: 19043187--19043242 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
19043177 ATTTCTCAAA
*
19043187 ATCAGATACAGAA-ATAGAAAAT
1 ATCAAATACAGAATATAGAAAAT
* * *
19043209 ATCATATACA-AATGTAGAACAT
1 ATCAAATACAGAATATAGAAAAT
19043231 ATCAAATACAGA
1 ATCAAATACAGA
19043243 TGCAAATTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.89
23 1 0.04
ACGTcount: A:0.55, C:0.12, G:0.11, T:0.21
Consensus pattern (23 bp):
ATCAAATACAGAATATAGAAAAT
Found at i:19043930 original size:62 final size:63
Alignment explanation
Indices: 19043859--19043981 Score: 160
Period size: 63 Copynumber: 2.0 Consensus size: 63
19043849 TCCTAAGCCT
* * *
19043859 GTGTGACCTTAAAGCC-AAACAATGAGTTACACGGCCTCGG-CACATGCCCGTGTCTCTAGCTC
1 GTGTGACCTTAAAGCCAAAACAATAAGTTACACGG-CTCGGACACACGCCCGTGTCCCTAGCTC
* * * *
19043921 GTGTGACCTTAAATCCAAAACAGTAAGTTATACGGCTTGGACACACGCCCGTGTCCCTAGC
1 GTGTGACCTTAAAGCCAAAACAATAAGTTACACGGCTCGGACACACGCCCGTGTCCCTAGC
19043982 CCGTATGCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
62 19 0.37
63 33 0.63
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (63 bp):
GTGTGACCTTAAAGCCAAAACAATAAGTTACACGGCTCGGACACACGCCCGTGTCCCTAGCTC
Found at i:19048469 original size:16 final size:17
Alignment explanation
Indices: 19048448--19048479 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
19048438 AAATATGCAA
19048448 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
19048464 TCACATAACTTCATAT
1 TCACATAACTTCATAT
19048480 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:19048718 original size:43 final size:43
Alignment explanation
Indices: 19048640--19048811 Score: 183
Period size: 43 Copynumber: 4.0 Consensus size: 43
19048630 GACTCGTACA
* * * * *
19048640 ATGCCAATGTCCCAGACGTTGTCTTACATGTAATCACATATCG
1 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCACATATCG
* *
19048683 ATGCCACTGTCCCAGAACAGGGTCTTACAC-AAATCAAATA-CG
1 ATGCCACTGTCCCAG-ACATGGTCTTACACGAAATCACATATCG
*
19048725 ATGCCAATGTCCCAGACATGGTCTTACACGTAAA-CACA-AGTCG
1 ATGCCACTGTCCCAGACATGGTCTTACACG-AAATCACATA-TCG
* *
19048768 ATGCCAAC-ATCCCAGACATGGTCTTACACGAAAACACATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCACATATCG
19048811 A
1 A
19048812 AATCCTATGT
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
41 14 0.13
42 22 0.20
43 61 0.56
44 12 0.11
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:19048783 original size:85 final size:84
Alignment explanation
Indices: 19048640--19048796 Score: 219
Period size: 85 Copynumber: 1.9 Consensus size: 84
19048630 GACTCGTACA
* * * * *
19048640 ATGCCAATGTCCCAGACGTTGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGAACAGGG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACATATCGATGCCACTATCCCAG-ACAGGG
19048705 TCTTACACAAATCAAATACG
65 TCTTACACAAATCAAATACG
*
19048725 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACA-AGTCGATGCCAAC-ATCCCAGACATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACATA-TCGATGCC-ACTATCCCAGACAGG
19048788 GTCTTACAC
64 GTCTTACAC
19048797 GAAAACACAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
84 14 0.22
85 48 0.75
86 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (84 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACATATCGATGCCACTATCCCAGACAGGGT
CTTACACAAATCAAATACG
Found at i:19055024 original size:47 final size:48
Alignment explanation
Indices: 19054874--19055024 Score: 184
Period size: 47 Copynumber: 3.2 Consensus size: 48
19054864 GTCACAGTAA
** *
19054874 TGCAGATAAA-CTTCCAGTTAATAATATTATGGACAAGCCACCACTTT
1 TGCAGATAAATCCGCCACTTAATAATATTATGGACAAGCCACCACTTT
* *
19054921 TGCAGAT-AATCCGCCACTTAATAAAATTATAGACAAGCCACCACTTT
1 TGCAGATAAATCCGCCACTTAATAATATTATGGACAAGCCACCACTTT
* * * *
19054968 TGTAGATAAAT-TGCCACATT-ATAATATTGTGGACAAGCCACCATTTT
1 TGCAGATAAATCCGCCAC-TTAATAATATTATGGACAAGCCACCACTTT
19055015 TGCAGATAAA
1 TGCAGATAAA
19055025 CTGTCACTTT
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
46 2 0.02
47 82 0.92
48 5 0.06
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (48 bp):
TGCAGATAAATCCGCCACTTAATAATATTATGGACAAGCCACCACTTT
Found at i:19055103 original size:19 final size:20
Alignment explanation
Indices: 19055079--19055117 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
19055069 ATATGGCCAC
19055079 AAAAATC-ACTTTTCACTTT
1 AAAAATCAACTTTTCACTTT
*
19055098 AAAAATCAATTTTTCACTTT
1 AAAAATCAACTTTTCACTTT
19055118 GGCATGTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (20 bp):
AAAAATCAACTTTTCACTTT
Found at i:19059205 original size:3 final size:3
Alignment explanation
Indices: 19059193--19059231 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
19059183 TTTCTAAGTT
19059193 TGA T-A TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
19059232 TTTGGTTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:19061076 original size:11 final size:13
Alignment explanation
Indices: 19061052--19061083 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
19061042 TAGTTTATTA
19061052 ATATTTTAATATG
1 ATATTTTAATATG
19061065 AT-TTTTAA-ATG
1 ATATTTTAATATG
19061076 ATATTTTA
1 ATATTTTA
19061084 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:19071034 original size:31 final size:33
Alignment explanation
Indices: 19070996--19071057 Score: 101
Period size: 31 Copynumber: 1.9 Consensus size: 33
19070986 ATACACTTTT
19070996 TTAATATTAATATAA-TTATT-TTTAATTAATA
1 TTAATATTAATATAATTTATTATTTAATTAATA
*
19071027 TTAATATTAATATAATTTTTTATTTAATTAA
1 TTAATATTAATATAATTTATTATTTAATTAA
19071058 ATTTTAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 15 0.54
32 4 0.14
33 9 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (33 bp):
TTAATATTAATATAATTTATTATTTAATTAATA
Found at i:19071064 original size:28 final size:31
Alignment explanation
Indices: 19070998--19071065 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
19070988 ACACTTTTTT
*
19070998 AATATTAATATAATTATTTTTAATTAATATT
1 AATATTAATATAATTATTTTTAATTAATATA
*
19071029 AATATTAATATAA-T-TTTTTATTTAAT-TA
1 AATATTAATATAATTATTTTTAATTAATATA
*
19071057 AATTTTAAT
1 AATATTAAT
19071066 GAAATGATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 9 0.26
29 11 0.32
30 1 0.03
31 13 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (31 bp):
AATATTAATATAATTATTTTTAATTAATATA
Found at i:19071283 original size:16 final size:15
Alignment explanation
Indices: 19071262--19071293 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
19071252 TTTAGGATAA
19071262 TAATTTAGAGTTAATT
1 TAATTTAGA-TTAATT
19071278 TAATTTAGATTAATT
1 TAATTTAGATTAATT
19071293 T
1 T
19071294 TTACTATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
TAATTTAGATTAATT
Found at i:19071600 original size:32 final size:31
Alignment explanation
Indices: 19071515--19071600 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 31
19071505 TTTCTGGAAA
19071515 ATGATTTACTGAAAATATTTTCTGGTGTTTGG
1 ATGATTT-CTGAAAATATTTTCTGGTGTTTGG
* *
19071547 ATGAATTTGTGTAAAATATTTTCTGTTGTTTGG
1 ATG-ATTTCTG-AAAATATTTTCTGGTGTTTGG
19071580 CA-GATTTCCTGAAAATATTTT
1 -ATGATTT-CTGAAAATATTTT
19071601 TTGAAAAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
32 19 0.40
33 27 0.57
34 1 0.02
ACGTcount: A:0.27, C:0.07, G:0.19, T:0.48
Consensus pattern (31 bp):
ATGATTTCTGAAAATATTTTCTGGTGTTTGG
Found at i:19071660 original size:20 final size:20
Alignment explanation
Indices: 19071612--19071660 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
19071602 TGAAAAAGTT
* *
19071612 ATTTTTACATATATTAATAA
1 ATTTTTATACATATTAATAA
* *
19071632 AGTTATATACATATTAATAA
1 ATTTTTATACATATTAATAA
19071652 ATTTTTATA
1 ATTTTTATA
19071661 TTTTAAATTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTTTATACATATTAATAA
Found at i:19074124 original size:13 final size:13
Alignment explanation
Indices: 19074106--19074131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19074096 CCATTATTCA
19074106 TATATCTCTCACT
1 TATATCTCTCACT
19074119 TATATCTCTCACT
1 TATATCTCTCACT
19074132 CCTAACCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATCTCTCACT
Found at i:19074985 original size:22 final size:22
Alignment explanation
Indices: 19074938--19074985 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
19074928 GAATTCTTTT
* *
19074938 TAAATTTTTTATAATTTAATTG
1 TAAATTTATTATAATTTAATTC
*
19074960 TAAATTTATTCTAATTTACA-TC
1 TAAATTTATTATAATTTA-ATTC
19074982 TAAA
1 TAAA
19074986 AATATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
TAAATTTATTATAATTTAATTC
Found at i:19082337 original size:69 final size:69
Alignment explanation
Indices: 19082259--19082474 Score: 275
Period size: 69 Copynumber: 3.1 Consensus size: 69
19082249 ATTTCATCCT
19082259 TTTATATTTGTTTTATCTATTTATTTATTTATTATTCTTTTACTTTTTAAATA-TCTAAATTTAA
1 TTTATATTTGTTTTATCTATTTATTTATTTATTATTCTTTTACTTTTTAAATACT-TAAATTTAA
19082323 TATTA
65 TATTA
* * *
19082328 TTTATATTTGTTATATCTATTTATTTATTTGTTTCATATTATTTTAC-TTTTAAATACTTAAATT
1 TTTATATTTGTTTTATCTATTTATTTA-TT-TAT--TATTCTTTTACTTTTTAAATACTTAAATT
19082392 TAATATT-
62 TAATATTA
* *
19082399 TTTATATTTATTTTATC-A---ATTTATTTATTATTCTTTTACTTCTTAAATACTTAAATTTAAT
1 TTTATATTTGTTTTATCTATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAAT
19082460 ATTA
66 ATTA
19082464 TGTGTATATTT
1 T-T-TATATTT
19082475 TATCTATTTT
Statistics
Matches: 130, Mismatches: 8, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
63 10 0.08
64 23 0.18
65 3 0.02
66 3 0.02
67 12 0.09
69 26 0.20
70 3 0.02
71 17 0.13
72 22 0.17
73 11 0.08
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (69 bp):
TTTATATTTGTTTTATCTATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAAT
ATTA
Found at i:19098385 original size:50 final size:49
Alignment explanation
Indices: 19098275--19098453 Score: 161
Period size: 50 Copynumber: 3.7 Consensus size: 49
19098265 ATATTGGTGT
* ** * * *
19098275 CGATGCCATGCCCCAGATGTGGTCTTACACTGGCACTCATC--TCGA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCACTCCTCAGACCATGC
* *
19098322 TGATGCCATGTCCCAGACATGGTCTTACACTG-ACTCTTCTCTA-TCCATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCACTC--CTC-AGACCATGC
**
19098372 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGACTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCACTCCTCAGACCATGC
** *
19098422 CGATATCATGTCCCAAACATGGTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
19098454 GCACACTCAC
Statistics
Matches: 111, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
45 4 0.04
46 1 0.01
47 29 0.26
49 5 0.05
50 67 0.60
51 1 0.01
52 4 0.04
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCACTCCTCAGACCATGC
Found at i:19102760 original size:21 final size:21
Alignment explanation
Indices: 19102734--19102773 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19102724 TCCACATGGA
*
19102734 GTGTAGGGTTGGACGGAGTCC
1 GTGTAGAGTTGGACGGAGTCC
*
19102755 GTGTAGAGTTTGACGGAGT
1 GTGTAGAGTTGGACGGAGT
19102774 TGGAGTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.10, G:0.45, T:0.28
Consensus pattern (21 bp):
GTGTAGAGTTGGACGGAGTCC
Found at i:19107195 original size:56 final size:54
Alignment explanation
Indices: 19107102--19107260 Score: 228
Period size: 56 Copynumber: 2.9 Consensus size: 54
19107092 TACTTTTATT
* * *
19107102 CCCATATGACGTCATAGTCCCAGACTAGGTCTTACACTATGTGGTCTTCATTTC
1 CCCATATGATGTCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCACTTC
*
19107156 CCCATATGATGTCATAGCCACCATGACTAGGTCTTACACTATATGGTCTTCACTTC
1 CCCATATGATGTCATAGTC-CCA-GACTAGGTCTTACACTATATGGTCTTCACTTC
* * * *
19107212 CCCATATGGTGTAATAGTCCCAGACTAAGTATTACACTATATGGTCTTC
1 CCCATATGATGTCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTC
19107261 TTGCCATGGC
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
54 42 0.45
55 6 0.06
56 46 0.49
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (54 bp):
CCCATATGATGTCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCACTTC
Found at i:19108717 original size:20 final size:19
Alignment explanation
Indices: 19108684--19108737 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
19108674 ATTCCAAAAA
*
19108684 TAATATTATTTTAATAGATT
1 TAATATTATATTAATA-ATT
*
19108704 TAATATTAAATT-A-AATT
1 TAATATTATATTAATAATT
19108721 TAATAATTATATTAATA
1 TAAT-ATTATATTAATA
19108738 TTTTTTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 7 0.25
18 8 0.29
19 2 0.07
20 11 0.39
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
TAATATTATATTAATAATT
Found at i:19110275 original size:15 final size:14
Alignment explanation
Indices: 19110253--19110296 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
19110243 CCTTTTAATT
*
19110253 TTTA-TTTTCATTA
1 TTTATTTTTTATTA
*
19110266 TTTATTTTTTAAATA
1 TTTATTTTTT-ATTA
19110281 TTTATTTTTTATTA
1 TTTATTTTTTATTA
19110295 TT
1 TT
19110297 GAATTTCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 4 0.15
14 9 0.35
15 13 0.50
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTATTTTTTATTA
Found at i:19111445 original size:3 final size:3
Alignment explanation
Indices: 19111433--19111475 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
19111423 GGCTCGATTG
*
19111433 GAT G-T GAT GAT GAT GAT GAT GAT GAT GAT GAC GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
19111476 GCACCCTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.33, C:0.02, G:0.35, T:0.30
Consensus pattern (3 bp):
GAT
Found at i:19117283 original size:15 final size:16
Alignment explanation
Indices: 19117255--19117284 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
19117245 GAAAAAAAAT
19117255 TTAAATTCTATTTTCC
1 TTAAATTCTATTTTCC
19117271 TTAAATT-TATTTTC
1 TTAAATTCTATTTTC
19117285 TGTTGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (16 bp):
TTAAATTCTATTTTCC
Found at i:19120570 original size:2 final size:2
Alignment explanation
Indices: 19120563--19120605 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
19120553 AACAATAGTC
19120563 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19120605 A
1 A
19120606 AGACAAAGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19123244 original size:29 final size:30
Alignment explanation
Indices: 19123212--19123285 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
19123202 CAATTCAAGT
*
19123212 TTCATGTTTACAAA-TACAC-CAAATCAAAA
1 TTCATGTAT-CAAATTACACACAAATCAAAA
*
19123241 TTCATGTATCAAATTACACATTAAATCAAAA
1 TTCATGTATCAAATTACACA-CAAATCAAAA
*
19123272 TTCATATAT-AAATT
1 TTCATGTATCAAATT
19123286 TAATATTTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.10
29 13 0.33
30 5 0.13
31 17 0.44
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (30 bp):
TTCATGTATCAAATTACACACAAATCAAAA
Found at i:19124799 original size:26 final size:26
Alignment explanation
Indices: 19124737--19124802 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
19124727 AGTTCTTCAT
* * *
19124737 TGCTTTTGAAAAGTGCTTTTGAGAAC
1 TGCTTTTAAAAAATACTTTTGAGAAC
* * *
19124763 TGCTGTGAAAAAATACTTTTGAGAAG
1 TGCTTTTAAAAAATACTTTTGAGAAC
19124789 TGCTTTTAAAAAAT
1 TGCTTTTAAAAAAT
19124803 TTAGTTTAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (26 bp):
TGCTTTTAAAAAATACTTTTGAGAAC
Found at i:19125070 original size:82 final size:82
Alignment explanation
Indices: 19124947--19125100 Score: 276
Period size: 82 Copynumber: 1.9 Consensus size: 82
19124937 TTTTAGTAAG
19124947 AATATAAAAAAAATTATTATAACTTGTTGTTAATATTTTAATATATGAAATATAAATTTTAAATA
1 AATATAAAAAAAATTATTATAACTTGTTGTTAATATTTTAATATATGAAATAT--ATTTTAAATA
19125012 TTTTTAAGCAATAAATATT
64 TTTTTAAGCAATAAATATT
19125031 AATAT-AAAAAAATTATTATAAC-TGTTGTTAATATTTTAATATATGAAATATATTTTAAATATT
1 AATATAAAAAAAATTATTATAACTTGTTGTTAATATTTTAATATATGAAATATATTTTAAATATT
19125094 TTTAAGC
66 TTTAAGC
19125101 TAAACTATTT
Statistics
Matches: 70, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
80 19 0.27
82 29 0.41
83 17 0.24
84 5 0.07
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (82 bp):
AATATAAAAAAAATTATTATAACTTGTTGTTAATATTTTAATATATGAAATATATTTTAAATATT
TTTAAGCAATAAATATT
Found at i:19131162 original size:22 final size:22
Alignment explanation
Indices: 19131128--19131484 Score: 446
Period size: 22 Copynumber: 16.2 Consensus size: 22
19131118 ATGTAAAAAT
*
19131128 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* * * *
19131150 TATGGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
19131172 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* *
19131194 TGTTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
19131216 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* * * *
19131238 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
19131260 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
*
19131282 TGTTGAATT-AATGTTGTCCAAT
1 TGTTG-ATTAAATGTTGTCCAAA
19131304 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* * *
19131326 TATTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
**
19131348 TGTTGATTAAATACTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* * *
19131370 TGTTGATTTAATGCTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
*
19131392 TGTTGATTAAATGTTGTCTAAA
1 TGTTGATTAAATGTTGTCCAAA
* * * *
19131414 TGTTGATTGATTGATGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
19131436 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* **
19131458 TGTTAATTAAATGTTGTCTGAA
1 TGTTGATTAAATGTTGTCCAAA
19131480 TGTTG
1 TGTTG
19131485 GATAATTGTT
Statistics
Matches: 282, Mismatches: 51, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
21 3 0.01
22 276 0.98
23 3 0.01
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (22 bp):
TGTTGATTAAATGTTGTCCAAA
Found at i:19131484 original size:44 final size:44
Alignment explanation
Indices: 19131125--19131475 Score: 551
Period size: 44 Copynumber: 8.0 Consensus size: 44
19131115 TTGATGTAAA
* * *
19131125 AATTGTTGATTAAATGCTGTCCAAATATGGATTGAATGTTGTCC
1 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
19131169 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
1 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
* *
19131213 AATTGTTGATTAAATGTTGTCCAAATATTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
19131257 AATTGTTGATTAAATGTTGTCCAAATGTTGAATT-AATGTTGTCC
1 AATTGTTGATTAAATGTTGTCCAAATGTTG-ATTGAATGTTGTCC
*
19131301 AATTGTTGATTAAATGTTGTCCAAATATTGATTGAATGTTGTCC
1 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
** * *
19131345 AATTGTTGATTAAATACTGTCCAAATGTTGATTTAATGCTGTCC
1 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
* * *
19131389 AATTGTTGATTAAATGTTGTCTAAATGTTGATTGATTGATGTCC
1 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
* *
19131433 AATTGTTGATTAAATGTTGTCCAAATGTTAATTAAATGTTGTC
1 AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTC
19131476 TGAATGTTGG
Statistics
Matches: 281, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
43 3 0.01
44 275 0.98
45 3 0.01
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (44 bp):
AATTGTTGATTAAATGTTGTCCAAATGTTGATTGAATGTTGTCC
Found at i:19133534 original size:160 final size:160
Alignment explanation
Indices: 19133266--19133585 Score: 532
Period size: 160 Copynumber: 2.0 Consensus size: 160
19133256 TTTTAATATA
*
19133266 CACGGTCATCCATAAGAATTTCCAATGATGAGTTAAGAATTTCACATAATTATAAAAATAAAGAA
1 CACGGTCATCCATAAGAATTTCCAACGATGAGTTAAGAATTTCACATAATTATAAAAATAAAGAA
* *
19133331 GTTTAATATTGTTATGTAAAAATTCATCGTTAAAGGTCAAGATAAAAAATTTTGTTGCAAGAGAA
66 GTTTAATATTATTATGTAAAAATTCATCGTTAAAGGCCAAGATAAAAAATTTTGTTGCAAGAGAA
* ** **
19133396 AATATTTAAAATGGTTTAAGGAAACTTATT
131 AATATGTAAAATACTTTAAAAAAACTTATT
* *
19133426 CACGGTCATCCATAAGAATTTCTAACGATGAGTTAAGAATTTCACATAATTATAAAAATCAAGAA
1 CACGGTCATCCATAAGAATTTCCAACGATGAGTTAAGAATTTCACATAATTATAAAAATAAAGAA
* *
19133491 GTTTAATCTTATTATGTAAAAATTCATCGTTAAAGGCCAAGATAGAAAATTTTGTTGCAAGAGAA
66 GTTTAATATTATTATGTAAAAATTCATCGTTAAAGGCCAAGATAAAAAATTTTGTTGCAAGAGAA
19133556 AATATGTAAAATACTTTAAAAAAACTTATT
131 AATATGTAAAATACTTTAAAAAAACTTATT
19133586 TAATGCAACA
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
160 148 1.00
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (160 bp):
CACGGTCATCCATAAGAATTTCCAACGATGAGTTAAGAATTTCACATAATTATAAAAATAAAGAA
GTTTAATATTATTATGTAAAAATTCATCGTTAAAGGCCAAGATAAAAAATTTTGTTGCAAGAGAA
AATATGTAAAATACTTTAAAAAAACTTATT
Found at i:19133914 original size:7 final size:7
Alignment explanation
Indices: 19133902--19133940 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
19133892 AGAAACACCA
19133902 CTAAACC
1 CTAAACC
19133909 CTAAACC
1 CTAAACC
19133916 CTAAAACC
1 CT-AAACC
*
19133924 TTAAACC
1 CTAAACC
19133931 CTAAACC
1 CTAAACC
19133938 CTA
1 CTA
19133941 GGGTAAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:19133928 original size:15 final size:15
Alignment explanation
Indices: 19133904--19133940 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
19133894 AAACACCACT
19133904 AAACCCTAAACCCTA
1 AAACCCTAAACCCTA
*
19133919 AAACCTTAAACCCT-
1 AAACCCTAAACCCTA
19133933 AAACCCTA
1 AAACCCTA
19133941 GGGTAAGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACCCTAAACCCTA
Found at i:19135555 original size:13 final size:14
Alignment explanation
Indices: 19135514--19135555 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
19135504 AATCCAAGTC
* *
19135514 AAATAAAACAATTA
1 AAATAAAATAACTA
19135528 AAAT-AAATAACTA
1 AAATAAAATAACTA
19135541 AAATAAAATAA-TA
1 AAATAAAATAACTA
19135554 AA
1 AA
19135556 TCAAATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAATAACTA
Found at i:19137745 original size:62 final size:59
Alignment explanation
Indices: 19137641--19137841 Score: 165
Period size: 62 Copynumber: 3.2 Consensus size: 59
19137631 ATCACTTTAA
* * * *
19137641 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTAAATATTAAATCT
19137700 TATTAAATTAATAGAATA-TTAATCTACAAGATAAACATTAAATTAAATTAAATATTAAGATAAT
1 TATTAAATTAATAGAATACTT-A--T-CAAGATAAACATTAAATTAAATTAAATATT---A-AAT
19137764 CACTTT
58 --C--T
* * * **
19137770 AATATTAAATTAATAAAATA-ATATTAAGATAATTATTAAATTAAATTAAATATTAAATC-
1 --TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTAAATATTAAATCT
*
19137829 TATTAAAATAATA
1 TATTAAATTAATA
19137842 TTATATTTGG
Statistics
Matches: 118, Mismatches: 10, Indels: 30
0.75 0.06 0.19
Matches are distributed among these distances:
57 12 0.10
58 2 0.02
59 18 0.15
61 1 0.01
62 28 0.24
64 3 0.03
65 2 0.02
66 3 0.03
68 28 0.24
69 1 0.01
70 1 0.01
71 1 0.01
72 18 0.15
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.39
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTAAATATTAAATCT
Found at i:19137803 original size:23 final size:21
Alignment explanation
Indices: 19137777--19137825 Score: 55
Period size: 23 Copynumber: 2.3 Consensus size: 21
19137767 TTTAATATTA
19137777 AATTAATAAAATAATATTAAGAT
1 AATTAATAAAATAA-ATTAA-AT
* *
19137800 AATTATTAAATTAAATTAAAT
1 AATTAATAAAATAAATTAAAT
19137821 -ATTAA
1 AATTAA
19137826 ATCTATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 4 0.17
21 2 0.09
22 5 0.22
23 12 0.52
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTAATAAAATAAATTAAAT
Found at i:19137841 original size:68 final size:72
Alignment explanation
Indices: 19137700--19137844 Score: 165
Period size: 68 Copynumber: 2.1 Consensus size: 72
19137690 TATTAAATCT
*
19137700 TATTAAATTAATAGAATATTAATCTACAAGATAAACATTAAATTAAATTAAATATTAAGATAATC
1 TATTAAATTAATAGAATATTAATATACAAGATAAACATTAAATTAAATTAAATATTAAGATAATC
***
19137765 ACTTTAA
66 AAAATAA
* ** *
19137772 TATTAAATTAATA-AA-A-TAATAT-TAAGATAATTATTAAATTAAATTAAATATTAA-ATCTAT
1 TATTAAATTAATAGAATATTAATATACAAGATAAACATTAAATTAAATTAAATATTAAGAT-AAT
*
19137832 TAAAATAA
65 CAAAATAA
19137840 TATTA
1 TATTA
19137845 TATTTGGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
67 2 0.03
68 40 0.63
69 5 0.08
70 1 0.02
71 2 0.03
72 13 0.21
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (72 bp):
TATTAAATTAATAGAATATTAATATACAAGATAAACATTAAATTAAATTAAATATTAAGATAATC
AAAATAA
Found at i:19139341 original size:14 final size:14
Alignment explanation
Indices: 19139324--19139354 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
19139314 AATATTTGCT
*
19139324 TATCACAATTTCGC
1 TATCACAATTTCAC
19139338 TATCACAATTTCAC
1 TATCACAATTTCAC
19139352 TAT
1 TAT
19139355 GAATGCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (14 bp):
TATCACAATTTCAC
Found at i:19139675 original size:6 final size:6
Alignment explanation
Indices: 19139664--19139692 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
19139654 ATCACAAAGA
19139664 AAATAG AAATAG AAATAG AAATAG AAATA
1 AAATAG AAATAG AAATAG AAATAG AAATA
19139693 AAGAACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:19144551 original size:5 final size:5
Alignment explanation
Indices: 19144541--19144645 Score: 210
Period size: 5 Copynumber: 21.0 Consensus size: 5
19144531 AAATGTTATA
19144541 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
19144591 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
19144641 ATAAT
1 ATAAT
19144646 GTGATAATGA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 100 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:19155599 original size:26 final size:26
Alignment explanation
Indices: 19155563--19155615 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19155553 CAATAAAGGT
19155563 AGACAAAAACCAAACCATTTAATACA
1 AGACAAAAACCAAACCATTTAATACA
*
19155589 AGACAATAACCAAACCATTTAATACA
1 AGACAAAAACCAAACCATTTAATACA
19155615 A
1 A
19155616 CATAGGCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.23, G:0.04, T:0.17
Consensus pattern (26 bp):
AGACAAAAACCAAACCATTTAATACA
Found at i:19155897 original size:48 final size:48
Alignment explanation
Indices: 19155828--19155960 Score: 212
Period size: 48 Copynumber: 2.8 Consensus size: 48
19155818 TAGGATACAA
* *
19155828 ACAATGAAAGATACAAACAATAAACATCAGTTTGATAATGTCATTCAT
1 ACAATGACAGATACAAACAATAAACATCAGTTTGATAATGCCATTCAT
*** *
19155876 ACAATGGTTGATACAAACAATAAACATCAGTTTCATAATGCCATTCAT
1 ACAATGACAGATACAAACAATAAACATCAGTTTGATAATGCCATTCAT
19155924 ACAATGACAGATACAAACAATAAACATCAGTTTGATA
1 ACAATGACAGATACAAACAATAAACATCAGTTTGATA
19155961 CAAACAATAA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.26
Consensus pattern (48 bp):
ACAATGACAGATACAAACAATAAACATCAGTTTGATAATGCCATTCAT
Found at i:19156360 original size:44 final size:41
Alignment explanation
Indices: 19156283--19156389 Score: 130
Period size: 44 Copynumber: 2.6 Consensus size: 41
19156273 GAAAAAGATC
* *
19156283 AATCGATTTCTAACCCTATACC-A-TGTTAATCGATTATTG
1 AATCGATTTCTAACCCTAAACCAACTGTTAATCGATTACTG
*
19156322 AATCGATATTCTAACCCTAAACCAACTTTGTTAATCGATTCCTG
1 AATCGAT-TTCTAACCCTAAACCAAC--TGTTAATCGATTACTG
*
19156366 AATCAATTTCTAACCC-AAACCAAC
1 AATCGATTTCTAACCCTAAACCAAC
19156390 CCAAGTCACA
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
39 7 0.12
40 14 0.24
41 1 0.02
42 8 0.14
43 9 0.15
44 20 0.34
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (41 bp):
AATCGATTTCTAACCCTAAACCAACTGTTAATCGATTACTG
Found at i:19157493 original size:22 final size:21
Alignment explanation
Indices: 19157445--19157493 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
19157435 ATTTCATAGT
* *
19157445 TATTTTTTATATTTTTAATTA
1 TATTTTTTATATATTTAATAA
19157466 TAATTTTTTATGATATTTAATAA
1 T-ATTTTTTAT-ATATTTAATAA
19157489 TATTT
1 TATTT
19157494 GAAATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 13 0.54
23 10 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TATTTTTTATATATTTAATAA
Found at i:19157564 original size:32 final size:32
Alignment explanation
Indices: 19157470--19157562 Score: 90
Period size: 33 Copynumber: 3.0 Consensus size: 32
19157460 TAATTATAAT
*
19157470 TTTTTATGATA-TTTAA-TA-A-TATTTGAAATA
1 TTTTTAT-ATATTTTAATTAGATTATTT-AAAAA
*
19157500 TTTTTATATATTTTAATTAGATTATTTTAAAA
1 TTTTTATATATTTTAATTAGATTATTTAAAAA
*
19157532 TTTTTAATATATTTTATTTA-ATT-TTTAAAAA
1 TTTTT-ATATATTTTAATTAGATTATTTAAAAA
19157563 ATAATATAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
29 3 0.06
30 12 0.22
31 9 0.17
32 12 0.22
33 18 0.33
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (32 bp):
TTTTTATATATTTTAATTAGATTATTTAAAAA
Found at i:19163434 original size:18 final size:16
Alignment explanation
Indices: 19163400--19163435 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
19163390 CAATATAATA
19163400 TATTTTTAATAACTTT
1 TATTTTTAATAACTTT
19163416 TATTTTATAATATACTTT
1 TATTTT-TAATA-ACTTT
19163434 TA
1 TA
19163436 AAAGCTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTTTAATAACTTT
Found at i:19163452 original size:28 final size:28
Alignment explanation
Indices: 19163392--19163452 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
19163382 TATTAATCCA
*
19163392 ATATAATATATTTTTAATAACTTTTATT
1 ATATAATATACTTTTAATAACTTTTATT
*
19163420 TTATAATATACTTTTAA-AAGCTATTT-TT
1 ATATAATATACTTTTAATAA-CT-TTTATT
19163448 ATATA
1 ATATA
19163453 TTTCATCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 2 0.07
28 23 0.82
29 3 0.11
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (28 bp):
ATATAATATACTTTTAATAACTTTTATT
Found at i:19179609 original size:62 final size:62
Alignment explanation
Indices: 19179538--19179657 Score: 170
Period size: 62 Copynumber: 1.9 Consensus size: 62
19179528 TTTTTCCCCG
* * *
19179538 TTTTATTTTCCCCAAATCAGTTCTCCCCTT-CCCAAAATCCCTAACTTTTTTTCCCAATTCC
1 TTTTATTTTCCCCAAATCAGTTCCCCCCTTCCCCAAAATCCCTAACTCTTTTCCCCAATTCC
* * *
19179599 TTTTATTTTTCCCCAAATTAGTTCCCCCCTTCCCCGAAATCCCTGACTCTTTTCCCCAA
1 TTTTA-TTTTCCCCAAATCAGTTCCCCCCTTCCCCAAAATCCCTAACTCTTTTCCCCAA
19179658 CGTCAGCTGC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
61 5 0.10
62 23 0.45
63 23 0.45
ACGTcount: A:0.20, C:0.38, G:0.03, T:0.39
Consensus pattern (62 bp):
TTTTATTTTCCCCAAATCAGTTCCCCCCTTCCCCAAAATCCCTAACTCTTTTCCCCAATTCC
Found at i:19179695 original size:25 final size:25
Alignment explanation
Indices: 19179663--19179745 Score: 123
Period size: 25 Copynumber: 3.3 Consensus size: 25
19179653 CCCAACGTCA
19179663 GCTGCATCATCGTCAGCAGCCCTCT
1 GCTGCATCATCGTCAGCAGCCCTCT
*
19179688 GCTGCATCATCGTCGGCAGCCCTCT
1 GCTGCATCATCGTCAGCAGCCCTCT
**
19179713 GCTGCCGC-TCCGTCAGCAGCCCTCT
1 GCTGCATCAT-CGTCAGCAGCCCTCT
19179738 GCTGCATC
1 GCTGCATC
19179746 GCCGTGTAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
24 1 0.02
25 50 0.98
ACGTcount: A:0.12, C:0.42, G:0.23, T:0.23
Consensus pattern (25 bp):
GCTGCATCATCGTCAGCAGCCCTCT
Found at i:19181278 original size:4 final size:4
Alignment explanation
Indices: 19181269--19181366 Score: 53
Period size: 4 Copynumber: 25.0 Consensus size: 4
19181259 TTTGGAACCC
* * * *
19181269 TAAT TAAT TAAT T-TT TGAT TAAT TAAT TAAA TAAT CATAAT TCA- TAA-
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT --TAAT TAAT TAAT
* * * * *
19181316 TAAT TCTAT GAA- TAAT TAAT TAAT TAAT T-TT TGAT TAAT TAAT TAAA
1 TAAT T-AAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT
19181363 TAAT
1 TAAT
19181367 CATATTTCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
3 11 0.15
4 54 0.76
5 2 0.03
6 4 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:19181293 original size:19 final size:19
Alignment explanation
Indices: 19181269--19181361 Score: 62
Period size: 19 Copynumber: 4.6 Consensus size: 19
19181259 TTTGGAACCC
*
19181269 TAATTAATTAATTTTTGAT
1 TAATTAATTAATTTATGAT
* * *
19181288 TAATTAATTAAATAATCA-
1 TAATTAATTAATTTATGAT
*
19181306 TAATTCATAATAATTCTATGAATAAT
1 TAATT-A-ATTAATT-TATG----AT
*
19181332 TAATTAATTAATTTTTGAT
1 TAATTAATTAATTTATGAT
19181351 TAATTAATTAA
1 TAATTAATTAA
19181362 ATAATCATAT
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
18 5 0.09
19 28 0.50
20 5 0.09
21 2 0.04
23 3 0.05
24 6 0.11
25 2 0.04
26 5 0.09
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (19 bp):
TAATTAATTAATTTATGAT
Found at i:19181490 original size:59 final size:59
Alignment explanation
Indices: 19181272--19181676 Score: 596
Period size: 59 Copynumber: 6.8 Consensus size: 59
19181262 GGAACCCTAA
* *
19181272 TTAATTAATTTTTGATTAATTAATTAAATAATCATAATTCATAATAATTCTATGAATAATT
1 TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAAT-A-T
*
19181333 AATTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTCTATGAATA-
1 --TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAATAT
* * * *
19181393 GTAATTAATTATCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAT
1 TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAATAT
* * *
19181452 TTATTTAATTTTTGATTAATTAATTAAATAATCGTATTTCATAATAACTTTATGAATAT
1 TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAATAT
* *
19181511 TTATTTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAATAA
1 TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAATAT
* ** *
19181570 TTAATTAATTTTTGATTAACTAAACAAATAATCATATTTCATAATAATTTTATGAATAA
1 TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAATAT
* **
19181629 TTAATTAATTTTTGATTAACTAAACAAATAATCATATTTCATAATAAT
1 TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAAT
19181677 GATTATCGTA
Statistics
Matches: 321, Mismatches: 20, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
58 53 0.17
59 211 0.66
62 1 0.00
63 56 0.17
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (59 bp):
TTAATTAATTTTTGATTAATTAATTAAATAATCATATTTCATAATAATTTTATGAATAT
Found at i:19187281 original size:66 final size:66
Alignment explanation
Indices: 19187154--19187290 Score: 168
Period size: 66 Copynumber: 2.1 Consensus size: 66
19187144 CAAATTGTTT
* * * **
19187154 AACTTAAAGCGGAGGCAGCATCGAGAGAAGTAGAGGCTCAAAGAAAATATGATGAACTCCAAATA
1 AACTTAAAGCGGAGACAGCAGCGAGAGAAGTAGAGGCTAAAAGAAAATATGACAAACTCCAAATA
19187219 C
66 C
* * * *
19187220 AACTTAAAGCGGAGACAGCAGCGGGGGAAGTAGAGGC-AAATAGAAAATATGACAAATTCCAACT
1 AACTTAAAGCGGAGACAGCAGCGAGAGAAGTAGAGGCTAAA-AGAAAATATGACAAACTCCAAAT
*
19187284 AT
65 AC
19187286 AACTT
1 AACTT
19187291 CAAAAAATGA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
65 2 0.03
66 58 0.97
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (66 bp):
AACTTAAAGCGGAGACAGCAGCGAGAGAAGTAGAGGCTAAAAGAAAATATGACAAACTCCAAATA
C
Found at i:19187732 original size:85 final size:86
Alignment explanation
Indices: 19187580--19187776 Score: 292
Period size: 85 Copynumber: 2.3 Consensus size: 86
19187570 TACAAACGAA
* * * * *
19187580 AGAACATGACCTTTAG-TGACACTTTTCCTACAAACGCCGCTAAAGAATATGACCTTTAGTGGGG
1 AGAACATGACCTTTAGCAG-CGCTTTTCCCACAAACGCCGCTAAAGAATATGACCTTTAGCGGCG
19187644 CTTTTCCCAAAAATGCCGCTA-
65 CTTTTCCCAAAAATGCCGCTAT
*
19187665 ATAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAG-ATCATGACCTTTAGCGGCG
1 AGAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGAAT-ATGACCTTTAGCGGCG
19187729 CTTTTCCCAAAAATGCCGCTAT
65 CTTTTCCCAAAAATGCCGCTAT
*
19187751 AGAACATGACCTTTAGCAGCGTTTTT
1 AGAACATGACCTTTAGCAGCGCTTTT
19187777 TTCTTATAAA
Statistics
Matches: 101, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
84 2 0.02
85 74 0.73
86 25 0.25
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (86 bp):
AGAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGAATATGACCTTTAGCGGCGC
TTTTCCCAAAAATGCCGCTAT
Found at i:19187767 original size:43 final size:43
Alignment explanation
Indices: 19187578--19187776 Score: 238
Period size: 43 Copynumber: 4.7 Consensus size: 43
19187568 CCTACAAACG
* * * * *
19187578 AAAGAACATGACCTTTAGTGACACTTTTCCTACAAACGCCGCT
1 AAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCT
* * * *
19187621 AAAGAATATGACCTTTAGTGGGGCTTTTCCCAAAAATGCCGCT
1 AAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCT
* * *
19187664 -AATAACATGACCTTTAGCAGCGCTTTTCCCACAAACGCCGCT
1 AAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCT
* *
19187706 AAAGATCATGACCTTTAGCGGCGCTTTTCCCAAAAATGCCGCT
1 AAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCT
* * *
19187749 ATAGAACATGACCTTTAGCAGCGTTTTT
1 AAAGAACATGACCTTTAGCGGCGCTTTT
19187777 TTCTTATAAA
Statistics
Matches: 132, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 35 0.27
43 97 0.73
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
AAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCT
Found at i:19189398 original size:17 final size:17
Alignment explanation
Indices: 19189365--19189398 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
19189355 TTGGGAGAGT
*
19189365 AAAATTTGGGGTCAAAA
1 AAAATTTGGGGGCAAAA
*
19189382 AAAATTTGGGGGGAAAA
1 AAAATTTGGGGGCAAAA
19189399 TGGGTTCGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.29, T:0.21
Consensus pattern (17 bp):
AAAATTTGGGGGCAAAA
Found at i:19193392 original size:22 final size:24
Alignment explanation
Indices: 19193367--19193414 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
19193357 AAAAGATAGA
19193367 AATTTTTTTA-AT-AAAATAGCTT
1 AATTTTTTTATATAAAAATAGCTT
19193389 AATTTTTTTATATAAAAATAGCTT
1 AATTTTTTTATATAAAAATAGCTT
19193413 AA
1 AA
19193415 CAGATGAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 10 0.42
23 2 0.08
24 12 0.50
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (24 bp):
AATTTTTTTATATAAAAATAGCTT
Found at i:19195076 original size:31 final size:31
Alignment explanation
Indices: 19195041--19195103 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
19195031 AATAATTAAA
19195041 TAAAAGAACACTTAAAATAAACAAAGAATTT
1 TAAAAGAACACTTAAAATAAACAAAGAATTT
*
19195072 TAAAAGAACACTTAAAGTAAACAAAGAATTT
1 TAAAAGAACACTTAAAATAAACAAAGAATTT
19195103 T
1 T
19195104 CTCGTATAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.59, C:0.10, G:0.08, T:0.24
Consensus pattern (31 bp):
TAAAAGAACACTTAAAATAAACAAAGAATTT
Found at i:19199804 original size:24 final size:22
Alignment explanation
Indices: 19199774--19199818 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
19199764 TTGATAAATT
19199774 AAAATTAAAAATTTAATTATTAAA
1 AAAATTAAAAA-TTAATT-TTAAA
*
19199798 AAAATTAAATATTAATTTTAA
1 AAAATTAAAAATTAATTTTAA
19199819 GTTATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATTAAAAATTAATTTTAAA
Found at i:19199805 original size:16 final size:16
Alignment explanation
Indices: 19199769--19199812 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
19199759 GATGTTTGAT
19199769 AAATTAAA-ATT-AAA
1 AAATTAAATATTAAAA
* *
19199783 AATTTAATTATTAAAA
1 AAATTAAATATTAAAA
19199799 AAATTAAATATTAA
1 AAATTAAATATTAA
19199813 TTTTAAGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 6 0.25
15 3 0.12
16 15 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATTAAATATTAAAA
Found at i:19200486 original size:10 final size:10
Alignment explanation
Indices: 19200473--19200526 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
19200463 GACATGTAAC
19200473 AAAAATTATA
1 AAAAATTATA
19200483 AAAAA-TATA
1 AAAAATTATA
**
19200492 AAATTTTAGTA
1 AAAAATTA-TA
*
19200503 AAAAGTTATA
1 AAAAATTATA
*
19200513 AAAAAATATA
1 AAAAATTATA
19200523 AAAA
1 AAAA
19200527 TTGTAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 7 0.19
10 21 0.58
11 8 0.22
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:19200532 original size:29 final size:28
Alignment explanation
Indices: 19200473--19200559 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 28
19200463 GACATGTAAC
*
19200473 AAAAATTAT-AAAAAATATAAAATTTTAGT
1 AAAAATTATAAAAAAATATAAAA-ATT-GT
19200502 AAAAAGTTATAAAAAAATATAAAAATTGT
1 AAAAA-TTATAAAAAAATATAAAAATTGT
** **
19200531 AAATTTTTATAAAATCATA-AAAAATTGT
1 AAA-AATTATAAAAAAATATAAAAATTGT
19200559 A
1 A
19200560 TAATGCATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
28 10 0.20
29 21 0.42
30 6 0.12
31 13 0.26
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (28 bp):
AAAAATTATAAAAAAATATAAAAATTGT
Found at i:19200827 original size:39 final size:39
Alignment explanation
Indices: 19200742--19200829 Score: 92
Period size: 39 Copynumber: 2.3 Consensus size: 39
19200732 TTTTGGTACG
* *
19200742 ATAA-TTTTTATAGTTTTTTTTACGAATTTTATATTTCT
1 ATAATTTTTTATAGTTTTTGTTACGAATTTTAAATTTCT
* *
19200780 TTACATTTTTTATAG-TTTTGTTACGACTTTATAAAATTT-T
1 ATA-ATTTTTTATAGTTTTTGTTACGAATTT-T-AAATTTCT
19200820 ATAATTTTTT
1 ATAATTTTTT
19200830 TCTTCTATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
38 2 0.05
39 21 0.51
40 13 0.32
41 5 0.12
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (39 bp):
ATAATTTTTTATAGTTTTTGTTACGAATTTTAAATTTCT
Found at i:19200861 original size:9 final size:9
Alignment explanation
Indices: 19200849--19200898 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
19200839 GTTCTATATA
19200849 TTTTATAAT
1 TTTTATAAT
19200858 TTTTATAAT
1 TTTTATAAT
19200867 ATTTT-TACGAT
1 -TTTTATA--AT
19200878 TTTTAT-AT
1 TTTTATAAT
*
19200886 TTTTAAAAT
1 TTTTATAAT
19200895 TTTT
1 TTTT
19200899 CATTAAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
8 7 0.20
9 17 0.49
10 8 0.23
11 3 0.09
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:19200896 original size:17 final size:17
Alignment explanation
Indices: 19200865--19200898 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
19200855 AATTTTTATA
**
19200865 ATATTTTTACGATTTTT
1 ATATTTTTAAAATTTTT
19200882 ATATTTTTAAAATTTTT
1 ATATTTTTAAAATTTTT
19200899 CATTAAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (17 bp):
ATATTTTTAAAATTTTT
Found at i:19207633 original size:28 final size:27
Alignment explanation
Indices: 19207601--19207683 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 27
19207591 CTGAATGAGG
19207601 TCAATTTTTTTTCAATTTTTTAAGGGGT
1 TCAATTTTTTTTCAA-TTTTTAAGGGGT
*
19207629 TCAATTGTTTTTCAATTTTTAAGGGGT
1 TCAATTTTTTTTCAATTTTTAAGGGGT
* *
19207656 CCAAAATTTTTTTATTAACTTTTTAAGG
1 TC--AATTTTTTT-TCAA-TTTTTAAGG
19207684 ATTTAAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 13 0.28
28 14 0.30
29 8 0.17
30 3 0.06
31 9 0.19
ACGTcount: A:0.25, C:0.08, G:0.13, T:0.53
Consensus pattern (27 bp):
TCAATTTTTTTTCAATTTTTAAGGGGT
Found at i:19207666 original size:27 final size:27
Alignment explanation
Indices: 19207607--19207667 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 27
19207597 GAGGTCAATT
* *
19207607 TTTTTTCAATTTTTTAAGGGGTTCAAT
1 TTTTTTCAATTTTTTAAGGGGTCCAAA
19207634 TGTTTTTCAA-TTTTTAAGGGGTCCAAAA
1 T-TTTTTCAATTTTTTAAGGGGTCC-AAA
19207662 TTTTTT
1 TTTTTT
19207668 TATTAACTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (27 bp):
TTTTTTCAATTTTTTAAGGGGTCCAAA
Found at i:19208369 original size:21 final size:21
Alignment explanation
Indices: 19208343--19208391 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
19208333 GAGTGCAAAA
*
19208343 TTAAAAAACTTC-AAAAATTAT
1 TTAAAAAA-TTCTAAAAAATAT
19208364 TTAAAAAATTCTAAAAAATAT
1 TTAAAAAATTCTAAAAAATAT
*
19208385 ATAAAAA
1 TTAAAAA
19208392 TTTTCAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (21 bp):
TTAAAAAATTCTAAAAAATAT
Found at i:19208724 original size:39 final size:40
Alignment explanation
Indices: 19208671--19208803 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 40
19208661 GTTTGGATAG
* * * * *
19208671 AAAACGTTGATATAGATCGAGCATTAGCGGCGGTATTTGA
1 AAAACGCTGCTATAGGTCGACCATTAGCGGCGCTATTTGA
* **
19208711 AAAA-G-TCGCTATAGGTTGACCATTAGCGATGCTATTTGA
1 AAAACGCT-GCTATAGGTCGACCATTAGCGGCGCTATTTGA
* *
19208750 AAAACGCTGCTATAGGTCGACCATTAGCGGCACT-TCTTTA
1 AAAACGCTGCTATAGGTCGACCATTAGCGGCGCTAT-TTGA
*
19208790 AAAACGCCGCTATA
1 AAAACGCTGCTATA
19208804 TATCAAGCAT
Statistics
Matches: 76, Mismatches: 13, Indels: 8
0.78 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.41
40 43 0.57
41 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (40 bp):
AAAACGCTGCTATAGGTCGACCATTAGCGGCGCTATTTGA
Found at i:19208773 original size:40 final size:39
Alignment explanation
Indices: 19208671--19208778 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 39
19208661 GTTTGGATAG
* * * * *
19208671 AAAACGTTGATATAGATCGAGCATTAGCGGCGGTATTTGA
1 AAAACG-TGCTATAGGTCGACCATTAGCGACGCTATTTGA
* *
19208711 AAAA-GTCGCTATAGGTTGACCATTAGCGATGCTATTTGA
1 AAAACGT-GCTATAGGTCGACCATTAGCGACGCTATTTGA
19208750 AAAACGCTGCTATAGGTCGACCATTAGCG
1 AAAACG-TGCTATAGGTCGACCATTAGCG
19208779 GCACTTCTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
38 1 0.02
39 30 0.53
40 25 0.44
41 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (39 bp):
AAAACGTGCTATAGGTCGACCATTAGCGACGCTATTTGA
Found at i:19209235 original size:14 final size:14
Alignment explanation
Indices: 19209213--19209270 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
19209203 TTTAAAATAA
*
19209213 TTTAATGTTTAGAG
1 TTTAGTGTTTAGAG
*
19209227 TTTAGTGTTTACAG
1 TTTAGTGTTTAGAG
19209241 TTTAG-GTTGTAG-G
1 TTTAGTGTT-TAGAG
*
19209254 TTTA-TGGTTTAGTG
1 TTTAGT-GTTTAGAG
19209268 TTT
1 TTT
19209271 GGTTTGGGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
13 11 0.30
14 26 0.70
ACGTcount: A:0.19, C:0.02, G:0.26, T:0.53
Consensus pattern (14 bp):
TTTAGTGTTTAGAG
Found at i:19209243 original size:21 final size:20
Alignment explanation
Indices: 19209219--19209257 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
19209209 ATAATTTAAT
19209219 GTTTAGAGTT-TAGTGTTTACA
1 GTTTAG-GTTGTAG-GTTTACA
19209240 GTTTAGGTTGTAGGTTTA
1 GTTTAGGTTGTAGGTTTA
19209258 TGGTTTAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.03, G:0.28, T:0.49
Consensus pattern (20 bp):
GTTTAGGTTGTAGGTTTACA
Found at i:19209317 original size:28 final size:27
Alignment explanation
Indices: 19209285--19209337 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
19209275 TGGGTTTTAA
* *
19209285 GTTTTGGGATTAGGGTTTAATGTTTAGG
1 GTTTTGAGATTAGGG-TTAAAGTTTAGG
*
19209313 GTTTTTAGATTAGGGTTAAAGTTTA
1 GTTTTGAGATTAGGGTTAAAGTTTA
19209338 AAGTTTAGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (27 bp):
GTTTTGAGATTAGGGTTAAAGTTTAGG
Found at i:19210148 original size:43 final size:44
Alignment explanation
Indices: 19210077--19210164 Score: 151
Period size: 43 Copynumber: 2.0 Consensus size: 44
19210067 CATTTATGAT
19210077 AAAAACACCGCAAAAGGTAAGCAAATAGTGGCATTTTTGAAAAA
1 AAAAACACCGCAAAAGGTAAGCAAATAGTGGCATTTTTGAAAAA
* *
19210121 AAAAACATCGCAAAAGGTAAGC-AATAGTGGCGTTTTTGAAAAA
1 AAAAACACCGCAAAAGGTAAGCAAATAGTGGCATTTTTGAAAAA
19210164 A
1 A
19210165 TCGCCACAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 21 0.50
44 21 0.50
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.19
Consensus pattern (44 bp):
AAAAACACCGCAAAAGGTAAGCAAATAGTGGCATTTTTGAAAAA
Found at i:19211163 original size:9 final size:9
Alignment explanation
Indices: 19211148--19211185 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
19211138 TTTAAAGAGT
19211148 TTACATAAC
1 TTACATAAC
*
19211157 TTGCATAAC
1 TTACATAAC
*
19211166 TTACATAAT
1 TTACATAAC
19211175 TTACATAAC
1 TTACATAAC
19211184 TT
1 TT
19211186 TGAAGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (9 bp):
TTACATAAC
Found at i:19214794 original size:28 final size:28
Alignment explanation
Indices: 19214757--19214811 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
19214747 GTATCAGTAT
*
19214757 AGTGTAGGCCTTAGCCCATTACAGTAAC
1 AGTGTAGGCCTTAGCCCAATACAGTAAC
*
19214785 AGTGTGGGCCTTAGCCCAATACAGTAA
1 AGTGTAGGCCTTAGCCCAATACAGTAA
19214812 TCAATACAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (28 bp):
AGTGTAGGCCTTAGCCCAATACAGTAAC
Found at i:19214954 original size:26 final size:26
Alignment explanation
Indices: 19214916--19214995 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
19214906 GCCAACACAC
* *
19214916 CAATATCGTAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
* * *
19214942 TAATGACGCAGCAAAGCTGCTAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
19214968 CAATAACGCAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
19214994 CA
1 CA
19214996 GTATAAGTGG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTGCCAGTAA
Found at i:19215408 original size:19 final size:19
Alignment explanation
Indices: 19215384--19215456 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
19215374 AATCTTCAAG
19215384 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
19215403 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
19215422 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
19215441 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
19215457 ATATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:19215708 original size:23 final size:23
Alignment explanation
Indices: 19215664--19215708 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
19215654 TCTTATTTTG
* *
19215664 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
19215687 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
19215709 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:19215952 original size:16 final size:16
Alignment explanation
Indices: 19215931--19215966 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
19215921 ATCTTGTATC
19215931 ATTATTATTACTATTT
1 ATTATTATTACTATTT
*
19215947 ATTATTATTATTATTT
1 ATTATTATTACTATTT
19215963 -TTAT
1 ATTAT
19215967 ATTCATGCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTATTATTACTATTT
Found at i:19220987 original size:14 final size:15
Alignment explanation
Indices: 19220961--19220993 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
19220951 TCCCAAGCTG
19220961 GGAAGGTCCTTATGT
1 GGAAGGTCCTTATGT
*
19220976 GGAAGG-CCTTATTT
1 GGAAGGTCCTTATGT
19220990 GGAA
1 GGAA
19220994 AAGCGTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.30
Consensus pattern (15 bp):
GGAAGGTCCTTATGT
Done.