Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 72 of 216
Found at i:21746736 original size:12 final size:11
Alignment explanation
Indices: 21746716--21746749 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
21746706 GAAAATAAAG
21746716 AAAATAAAATA
1 AAAATAAAATA
21746727 AAATATAAAATA
1 AAA-ATAAAATA
21746739 TAAAATAAAAT
1 -AAAATAAAAT
21746750 TGGCTTGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.14
12 15 0.71
13 3 0.14
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:21751278 original size:32 final size:32
Alignment explanation
Indices: 21751237--21751302 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
21751227 ACCATAAATA
*
21751237 CAGTAATATGATTGGCACAAAGCCATCAGGAG
1 CAGTAATATGATCGGCACAAAGCCATCAGGAG
* * *
21751269 CAGTGATATGATCGGCACACAGCCATCAGTAG
1 CAGTAATATGATCGGCACAAAGCCATCAGGAG
21751301 CA
1 CA
21751303 TCGCAGCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (32 bp):
CAGTAATATGATCGGCACAAAGCCATCAGGAG
Found at i:21751351 original size:26 final size:26
Alignment explanation
Indices: 21751302--21751355 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
21751292 CATCAGTAGC
*
21751302 ATCGCAGCAAAGCTGCCAACAATAGT
1 ATCGCAGCAAAGCTACCAACAATAGT
* **
21751328 ATCGCAGGAAAGCTACCAGTAATAGT
1 ATCGCAGCAAAGCTACCAACAATAGT
21751354 AT
1 AT
21751356 ATGTGGCCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
ATCGCAGCAAAGCTACCAACAATAGT
Found at i:21751372 original size:27 final size:26
Alignment explanation
Indices: 21751337--21751402 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
21751327 TATCGCAGGA
* *
21751337 AAGCTACCAGTAATAGT-ATATGTGGCC
1 AAGCCACCAGTAACAGTGAT-TGTGG-C
21751364 AAGCCACCAGTAACAGTGATTGTGGC
1 AAGCCACCAGTAACAGTGATTGTGGC
21751390 AGAGCCACCAGTA
1 A-AGCCACCAGTA
21751403 CAATACTTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 31 0.89
28 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (26 bp):
AAGCCACCAGTAACAGTGATTGTGGC
Found at i:21751613 original size:54 final size:55
Alignment explanation
Indices: 21751550--21751778 Score: 299
Period size: 54 Copynumber: 4.2 Consensus size: 55
21751540 GGGCAAAATA
* *
21751550 GTCATTTTACCCTACAGGGGCATTACAG-TCATTTTA-CTTCATGAGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACGGATCATTTTACCCT-ATGAGGGTATTACG
* *
21751604 GTCATTTTACCCTACAGGGGTATTA-GGATCATTTTACCCTATAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACGGATCATTTTACCCTATGAGGGTATTACG
* * * *
21751658 GTTATTTTATCCTACAGGGGCATTAC-GATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGCATTACGGATCATTTTACCCTATGAGGGTATTACG
* * *
21751712 ATCATTTTACCCTACAGGGGCATTACGG-TCATTTTACCCTAT-AGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGCATTACGGATCATTTTACCCTATGA-GGGTATTACG
21751766 GTCATTTTACCCT
1 GTCATTTTACCCT
21751779 TTGAGGTTAT
Statistics
Matches: 154, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
53 1 0.01
54 150 0.97
55 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (55 bp):
GTCATTTTACCCTACAGGGGCATTACGGATCATTTTACCCTATGAGGGTATTACG
Found at i:21751624 original size:27 final size:27
Alignment explanation
Indices: 21751550--21751778 Score: 257
Period size: 27 Copynumber: 8.5 Consensus size: 27
21751540 GGGCAAAATA
* *
21751550 GTCATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
21751577 GTCATTTTA--CTTCATGAGGGTATTACG
1 GTCATTTTACCCTACA-G-GGGTATTACG
21751604 GTCATTTTACCCTACAGGGGTATTA-G
1 GTCATTTTACCCTACAGGGGTATTACG
* *
21751630 GATCATTTTACCCTATAAGGGTATTACG
1 G-TCATTTTACCCTACAGGGGTATTACG
* * *
21751658 GTTATTTTATCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* ** *
21751685 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
21751712 ATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
21751739 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTACG
21751766 GTCATTTTACCCT
1 GTCATTTTACCCT
21751779 TTGAGGTTAT
Statistics
Matches: 169, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
25 4 0.02
26 3 0.02
27 155 0.92
28 3 0.02
29 4 0.02
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:21751789 original size:27 final size:27
Alignment explanation
Indices: 21751742--21751829 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
21751732 CATTACGGTC
* *
21751742 ATTTTACCCTAT-AGGGGTATTTCAGTC
1 ATTTTACCCTTTGA-GGGTATTTCAGTA
* *
21751769 ATTTTACCCTTTGAGGTTATTTCATTA
1 ATTTTACCCTTTGAGGGTATTTCAGTA
* * * *
21751796 ATTTTATCCATCGAGGGTATTTTAGTA
1 ATTTTACCCTTTGAGGGTATTTCAGTA
21751823 ATTTTAC
1 ATTTTAC
21751830 AAATTTAGGG
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (27 bp):
ATTTTACCCTTTGAGGGTATTTCAGTA
Found at i:21764576 original size:34 final size:34
Alignment explanation
Indices: 21764537--21764610 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
21764527 GGTTTGAAAT
*
21764537 TTTCATGTATCGTGATCTTCCAATTCAATGCTTA
1 TTTCATGTATCGTGATCTGCCAATTCAATGCTTA
21764571 TTTCATGTATCGTGATCTGCCAATTCAATGCTTA
1 TTTCATGTATCGTGATCTGCCAATTCAATGCTTA
21764605 TTTCAT
1 TTTCAT
21764611 TGAAGGCAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (34 bp):
TTTCATGTATCGTGATCTGCCAATTCAATGCTTA
Found at i:21768507 original size:30 final size:26
Alignment explanation
Indices: 21768462--21768538 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 26
21768452 AAATTTGTTA
*
21768462 TTTATTTATTTATTTATTTTAAACATTTT
1 TTTA-TTA-TTATTTATTTTAAA-ATTGT
21768491 TTCTCATATATTATTTATTTT-AAATTGT
1 TT-T-AT-TATTATTTATTTTAAAATTGT
21768519 TTTATTATTATTTATTTTAA
1 TTTATTATTATTTATTTTAA
21768539 GTTTTTCACA
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
25 13 0.30
26 3 0.07
27 1 0.02
28 6 0.14
29 4 0.09
30 13 0.30
31 3 0.07
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (26 bp):
TTTATTATTATTTATTTTAAAATTGT
Found at i:21768542 original size:22 final size:24
Alignment explanation
Indices: 21768499--21768895 Score: 80
Period size: 26 Copynumber: 15.3 Consensus size: 24
21768489 TTTTCTCATA
21768499 TATTATTTATTTTAAATTGTTTTAT
1 TATTATTTATTTTAAA-TGTTTTAT
21768524 TATTATTTATTTT-AA-GTTTT-T
1 TATTATTTATTTTAAATGTTTTAT
* * * * ** *
21768545 CA-CATGTATTTTAAACTACTTCAAAC
1 TATTATTTATTTTAAA-T-GTT-TTAT
** *
21768571 TATTATCCATTTT-AATTTTTTAT
1 TATTATTTATTTTAAATGTTTTAT
21768594 ATATTATTTATTTTTAAACTGTCATATATAT
1 -TATTATTTA-TTTTAAA-TGT--T-T-TAT
* *
21768625 TATTTATTTATTTTTATTGTCTTTTTAT
1 TA-TTATTTATTTTAAATG---TTTTAT
21768653 ATATATCATTTATTTTTTAAAACTGATTTT-T
1 -TAT-T-ATTTA--TTTT-AAA-TG-TTTTAT
* *
21768684 ATATTATTTATTTTAAACTTCTTTTTACA
1 -TATTATTTATTTTAAA--T-GTTTTA-T
* *
21768713 TATTATTTATTTT-AA-GCCTTTAA
1 TATTATTTATTTTAAATG-TTTTAT
*
21768736 TA-TA-TTATTTTAAATTGTCTTAT
1 TATTATTTATTTTAAA-TGTTTTAT
* *
21768759 ATGTTATTTATTTTAAATCG-CTTAGT
1 -TATTATTTATTTTAAAT-GTTTTA-T
* *
21768785 ATATTATTTATTTTAATTTGTTTTACA
1 -TATTATTTATTTTAA-ATGTTTTA-T
* * *
21768812 TATTATTTACTTTAGATTGTTTTACA
1 TATTATTTATTTTA-AATGTTTTA-T
* *
21768838 TATTATTTACTTTAGATTGTTTTA-
1 TATTATTTATTTTA-AATGTTTTAT
* * *
21768862 TATTATTTACTTCAAATTGTTCTAT
1 TATTATTTATTTTAAA-TGTTTTAT
21768887 ATATTATTT
1 -TATTATTT
21768896 TGTTTTGCTT
Statistics
Matches: 286, Mismatches: 41, Indels: 89
0.69 0.10 0.21
Matches are distributed among these distances:
20 8 0.03
21 11 0.04
22 9 0.03
23 8 0.03
24 38 0.13
25 25 0.09
26 91 0.32
27 25 0.09
28 17 0.06
29 12 0.04
30 15 0.05
31 15 0.05
32 9 0.03
33 1 0.00
34 2 0.01
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (24 bp):
TATTATTTATTTTAAATGTTTTAT
Found at i:21768650 original size:59 final size:56
Alignment explanation
Indices: 21768587--21768725 Score: 149
Period size: 59 Copynumber: 2.4 Consensus size: 56
21768577 CCATTTTAAT
* *
21768587 TTTTTATATATTATTTATTTTT-AAACTGTCATATATATTAT-TTATTTATTTT-TATTGTC
1 TTTTTATATATTATTTATTTTTAAAACTG--AT-T-T-TTATATTATTTATTTTAAACT-TC
21768646 TTTTTATATATATCATTTATTTTTTAAAACTGATTTTTATATTATTTATTTTAAACTTC
1 TTTTTATATAT-T-ATTTA-TTTTTAAAACTGATTTTTATATTATTTATTTTAAACTTC
*
21768705 TTTTTACATATTATTTATTTT
1 TTTTTATATATTATTTATTTT
21768726 AAGCCTTTAA
Statistics
Matches: 71, Mismatches: 3, Indels: 15
0.80 0.03 0.17
Matches are distributed among these distances:
56 4 0.06
57 5 0.07
58 5 0.07
59 35 0.49
60 4 0.06
61 7 0.10
62 5 0.07
63 6 0.08
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (56 bp):
TTTTTATATATTATTTATTTTTAAAACTGATTTTTATATTATTTATTTTAAACTTC
Found at i:21768708 original size:26 final size:25
Alignment explanation
Indices: 21768679--21768895 Score: 120
Period size: 26 Copynumber: 8.6 Consensus size: 25
21768669 TTAAAACTGA
21768679 TTTTTATATTATTTATTTTAAACTTC
1 TTTTTATATTATTTATTTTAAA-TTC
*
21768705 TTTTTACATATTATTTATTTT-AA-GC
1 TTTTT--ATATTATTTATTTTAAATTC
* * *
21768730 CTTTAATA-TA-TTATTTTAAATTG
1 TTTTTATATTATTTATTTTAAATTC
* * *
21768753 TCTTATATGTTATTTATTTTAAATCGC
1 T-TTTTATATTATTTATTTTAAAT-TC
** * *
21768780 TTAGTATATTATTTATTTTAATTTG
1 TTTTTATATTATTTATTTTAAATTC
* * * *
21768805 TTTTACATATTATTTACTTTAGATTG
1 TTTT-TATATTATTTATTTTAAATTC
* * *
21768831 TTTTACATATTATTTACTTTAGATT-
1 TTTT-TATATTATTTATTTTAAATTC
* * * *
21768856 GTTTTATATTATTTACTTCAAATTG
1 TTTTTATATTATTTATTTTAAATTC
*
21768881 TTCTATATATTATTT
1 TT-TTTATATTATTT
21768896 TGTTTTGCTT
Statistics
Matches: 151, Mismatches: 29, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
21 7 0.05
22 4 0.03
23 3 0.02
24 21 0.14
25 12 0.08
26 87 0.58
27 3 0.02
28 14 0.09
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (25 bp):
TTTTTATATTATTTATTTTAAATTC
Found at i:21768841 original size:52 final size:52
Alignment explanation
Indices: 21768679--21768895 Score: 170
Period size: 52 Copynumber: 4.3 Consensus size: 52
21768669 TTAAAACTGA
*
21768679 TTTT-TATATTATTTATTTTAAACTTCT-TTTTACATATTATTTA-TTTTAA--G
1 TTTTATATATTATTTATTTT-AA-TT-TGTTTTACATATTATTTACTTTAAATTG
* * * * * * *
21768729 CCTTTA-ATA-TA-TTATTTTAAATTGTCTTATATGTTATTTATTTTAAATCG
1 -TTTTATATATTATTTATTTTAATTTGTTTTACATATTATTTACTTTAAATTG
* *
21768779 -CTTAGTATATTATTTATTTTAATTTGTTTTACATATTATTTACTTTAGATTG
1 TTTTA-TATATTATTTATTTTAATTTGTTTTACATATTATTTACTTTAAATTG
* * *
21768831 TTTTACATATTATTTACTTTAGA-TTGTTTT--ATATTATTTACTTCAAATTG
1 TTTTATATATTATTTATTTTA-ATTTGTTTTACATATTATTTACTTTAAATTG
*
21768881 TTCTATATATTATTT
1 TTTTATATATTATTT
21768896 TGTTTTGCTT
Statistics
Matches: 134, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
46 1 0.01
47 14 0.10
48 10 0.07
49 7 0.05
50 37 0.28
51 8 0.06
52 53 0.40
53 4 0.03
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (52 bp):
TTTTATATATTATTTATTTTAATTTGTTTTACATATTATTTACTTTAAATTG
Found at i:21768881 original size:50 final size:51
Alignment explanation
Indices: 21768785--21768895 Score: 145
Period size: 50 Copynumber: 2.2 Consensus size: 51
21768775 ATCGCTTAGT
* * * *
21768785 ATATTATTTATTTTAATTTGTTTTACATATTATTTACTTTAGATTGTTTTAC
1 ATATTATTTACTTTAATTTGTTTTA-ATATTATTTACTTCAAATTGTTCTAC
*
21768837 ATATTATTTACTTTAGA-TTGTTTT-ATATTATTTACTTCAAATTGTTCTAT
1 ATATTATTTACTTTA-ATTTGTTTTAATATTATTTACTTCAAATTGTTCTAC
21768887 ATATTATTT
1 ATATTATTT
21768896 TGTTTTGCTT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
50 31 0.58
52 21 0.40
53 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.60
Consensus pattern (51 bp):
ATATTATTTACTTTAATTTGTTTTAATATTATTTACTTCAAATTGTTCTAC
Found at i:21781344 original size:51 final size:50
Alignment explanation
Indices: 21781285--21781423 Score: 174
Period size: 51 Copynumber: 2.7 Consensus size: 50
21781275 AGTGAAAGTG
21781285 ATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGAGTA-CTGAATAGCT
1 ATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGAGTATC-GAATAG-T
* * * *
21781336 -TCGATCACGTGTATAGTACTATATGCAGGCTACTACGTGTATCGAATAGT
1 AT-GATCACGTGTGTAGTACTATGTGCAGGCTACTATGAGTATCGAATAGT
* *
21781386 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
1 -ATGATCACGTGTGTAGTACTATGTGCAGGCTACTATG
21781424 TGAATTGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
50 2 0.03
51 71 0.95
52 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
ATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGAGTATCGAATAGT
Found at i:21781670 original size:16 final size:16
Alignment explanation
Indices: 21781649--21781680 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21781639 TGATTGAAAG
*
21781649 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
21781665 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
21781681 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:21783483 original size:46 final size:45
Alignment explanation
Indices: 21783413--21783698 Score: 181
Period size: 46 Copynumber: 6.4 Consensus size: 45
21783403 GGGTGTTACA
*
21783413 TTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATACACAAACC
1 TTATCTCCTTGAAGTTGCAGTGGAGCAGGAT-AAAATACACAAACC
* * ** **
21783459 TTATCTCCTTGAAGTTGCAATGGAGCAGGTTGAAGTTAC-CAATTC
1 TTATCTCCTTGAAGTTGCAGTGGAGCAGGAT-AAAATACACAAACC
* * * ** * *
21783504 TTATCTCCTTGAAGTTCCAGCGGAGTA-GATCGAA-GCTACAAATC
1 TTATCTCCTTGAAGTTGCAGTGGAGCAGGATAAAATAC-ACAAACC
* * * * ** ** *
21783548 TCT-TCTCCCTGAAATTACATTGGAGCA-GATCGAAGCCACAATCC
1 T-TATCTCCTTGAAGTTGCAGTGGAGCAGGATAAAATACACAAACC
* * *
21783592 TTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATACCCAAACC
1 TTATCTCCTTGAAGTTGCAGTGGAGCAGGAT-AAAATACACAAACC
* * * **
21783638 TTATCT-CTCTAAAGTTGCAGTGGAGCAGGTTGAAATTAC-CAATTC
1 TTATCTCCT-TGAAGTTGCAGTGGAGCAGGAT-AAAATACACAAACC
21783683 TTATCTCCTTGAAGTT
1 TTATCTCCTTGAAGTT
21783699 ACAGCAGAGT
Statistics
Matches: 185, Mismatches: 46, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 60 0.32
45 49 0.26
46 74 0.40
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (45 bp):
TTATCTCCTTGAAGTTGCAGTGGAGCAGGATAAAATACACAAACC
Found at i:21783580 original size:44 final size:44
Alignment explanation
Indices: 21783413--21783618 Score: 128
Period size: 44 Copynumber: 4.6 Consensus size: 44
21783403 GGGTGTTACA
* * ** ** *
21783413 TTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATACACAAACC
1 TTATCTCCCTGAAATTACAGTGGAGCA-GAT-CGAAGCCACAATCC
* * * * * * ** *
21783459 TTATCTCCTTGAAGTTGCAATGGAGCAGGTTGAAGTTACCAATTC
1 TTATCTCCCTGAAATTACAGTGGAGCAGATCGAAGCCA-CAATCC
* * * * * *
21783504 TTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAAT-C
1 TTATCTCCCTGAAATTACAGTGGAGCAGATCGAAGCCAC-AATCC
*
21783548 TCT-TCTCCCTGAAATTACATTGGAGCAGATCGAAGCCACAATCC
1 T-TATCTCCCTGAAATTACAGTGGAGCAGATCGAAGCCACAATCC
* *
21783592 TTATCTCCCTGAAGTTGCAGTGGAGCA
1 TTATCTCCCTGAAATTACAGTGGAGCA
21783619 AGATAAAAAT
Statistics
Matches: 128, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
43 4 0.03
44 58 0.45
45 41 0.32
46 25 0.20
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (44 bp):
TTATCTCCCTGAAATTACAGTGGAGCAGATCGAAGCCACAATCC
Found at i:21783713 original size:179 final size:179
Alignment explanation
Indices: 21783413--21783752 Score: 567
Period size: 179 Copynumber: 1.9 Consensus size: 179
21783403 GGGTGTTACA
* *
21783413 TTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATACACAAACCTTATCTCCTTGAAGTTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATACACAAACCTTATCTCCTTAAAGTTGCA
* * * *
21783478 ATGGAGCAGGTTGAAGTTACCAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTAC
66 ATGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTACAGCAGAGTAGATCAAAGCTAC
21783543 AAATCTCTTCTCCCT-GAAATTACATTGGAGCAGATCGAAGCCACAATCC
131 AAATCTCTTCTCCCTAG-AATTACATTGGAGCAGATCGAAGCCACAATCC
*
21783592 TTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATACCCAAACCTTATCT-CTCTAAAGTTGC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATACACAAACCTTATCTCCT-TAAAGTTGC
*
21783656 AGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTACAGCAGAGTAGATCAAAGCTA
65 AATGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTACAGCAGAGTAGATCAAAGCTA
*
21783721 CAAGTCTCTTCTCCCTAGAATTACATTGGAGC
130 CAAATCTCTTCTCCCTAGAATTACATTGGAGC
21783753 GGACCGAGAC
Statistics
Matches: 150, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
178 2 0.01
179 147 0.98
180 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (179 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATACACAAACCTTATCTCCTTAAAGTTGCA
ATGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTACAGCAGAGTAGATCAAAGCTAC
AAATCTCTTCTCCCTAGAATTACATTGGAGCAGATCGAAGCCACAATCC
Found at i:21785282 original size:25 final size:26
Alignment explanation
Indices: 21785254--21785308 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
21785244 ACTATTATCC
* *
21785254 ATTTTAAA-TTTTTTATATATTATTT
1 ATTTTAAACTGTTATATATATTATTT
21785279 ATTTTTAAACTGTTATATATATTATTT
1 A-TTTTAAACTGTTATATATATTATTT
21785306 ATT
1 ATT
21785309 ATTTTGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 1 0.04
26 9 0.35
27 16 0.62
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (26 bp):
ATTTTAAACTGTTATATATATTATTT
Found at i:21785384 original size:25 final size:25
Alignment explanation
Indices: 21785339--21785520 Score: 101
Period size: 26 Copynumber: 7.2 Consensus size: 25
21785329 ATATATCATC
** *
21785339 TATTT-TTTTAAAACTGATTTTCTAT
1 TATTTATTTT-AAACTTCTTTTATAT
21785364 TATTTATTTTAAACTTCTTTTTACATAT
1 TATTTATTTTAAACTTC-TTTT--ATAT
* *
21785392 TATTTATTTCAAGC--CTTTTATA-
1 TATTTATTTTAAACTTCTTTTATAT
* * *
21785414 TA-TTATTTTAAATTGTCTTATATGT
1 TATTTATTTTAAACT-TCTTTTATAT
*
21785439 TATTTATTTTAAA-TCGCTTTGTATAT
1 TATTTATTTTAAACT-TCTTT-TATAT
* *
21785465 TATTTATTTT-AATTTGTTTTACATAT
1 TATTTATTTTAAACTTCTTTT--ATAT
* * *
21785491 TATTTACTTTAGA-TTGTTTTATAT
1 TATTTATTTTAAACTTCTTTTATAT
21785515 TATTTA
1 TATTTA
21785521 CTTCAAATTG
Statistics
Matches: 125, Mismatches: 18, Indels: 29
0.73 0.10 0.17
Matches are distributed among these distances:
21 8 0.06
22 2 0.02
23 3 0.02
24 17 0.14
25 25 0.20
26 54 0.43
27 1 0.01
28 15 0.12
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.60
Consensus pattern (25 bp):
TATTTATTTTAAACTTCTTTTATAT
Found at i:21785445 original size:26 final size:25
Alignment explanation
Indices: 21785361--21785545 Score: 137
Period size: 26 Copynumber: 7.3 Consensus size: 25
21785351 ACTGATTTTC
* *
21785361 TATTATTTATTTTAAACTTCTTTTTACA
1 TATTATTTATTTTAAA--T-TGTTTATA
* ***
21785389 TATTATTTA-TTTCAAGCCTTT-TA
1 TATTATTTATTTTAAATTGTTTATA
21785412 TA-TA-TTATTTTAAATTGTCTTATA
1 TATTATTTATTTTAAATTGT-TTATA
* * *
21785436 TGTTATTTATTTTAAATCGCTTTGTA
1 TATTATTTATTTTAAATTG-TTTATA
* *
21785462 TATTATTTATTTTAATTTGTTTTACA
1 TATTATTTATTTTAAATTG-TTTATA
* *
21785488 TATTATTTACTTTAGATTGTTT-TA
1 TATTATTTATTTTAAATTGTTTATA
* *
21785512 TATTATTTACTTCAAATTGTTCTATA
1 TATTATTTATTTTAAATTGTT-TATA
21785538 TATTATTT
1 TATTATTT
21785546 TGTTTCGTTT
Statistics
Matches: 125, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
21 3 0.02
22 8 0.06
23 5 0.04
24 26 0.21
25 6 0.05
26 62 0.50
27 6 0.05
28 9 0.07
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.60
Consensus pattern (25 bp):
TATTATTTATTTTAAATTGTTTATA
Found at i:21785532 original size:50 final size:48
Alignment explanation
Indices: 21785356--21785545 Score: 168
Period size: 50 Copynumber: 3.8 Consensus size: 48
21785346 TTAAAACTGA
* * * *
21785356 TTTTCTATTATTTATTTTAAACTTCTTTTTACATATTATTTATTTCAAGCC
1 TTTTATATTATTTATTTTAAA-TT-GTTTTACATATTATTTATTT-AATCG
* * *
21785407 TTTTATA-TA-TTATTTTAAATTGTCTTATATGTTATTTATTTTAAATCG
1 TTTTATATTATTTATTTTAAATTGTTTTACATATTATTTA-TTT-AATCG
* *
21785455 CTTTGTATATTATTTATTTTAATTTGTTTTACATATTATTTACTTTAGATTG
1 -TTT-TATATTATTTATTTTAAATTGTTTTACATATTATTTA-TTTA-ATCG
* * * *
21785507 TTTTATATTATTTACTTCAAATTGTTCTATATATTATTT
1 TTTTATATTATTTATTTTAAATTGTTTTACATATTATTT
21785546 TGTTTCGTTT
Statistics
Matches: 114, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
47 13 0.11
48 8 0.07
49 13 0.11
50 37 0.32
51 12 0.11
52 31 0.27
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.61
Consensus pattern (48 bp):
TTTTATATTATTTATTTTAAATTGTTTTACATATTATTTATTTAATCG
Found at i:21789929 original size:28 final size:30
Alignment explanation
Indices: 21789892--21789961 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
21789882 TTTTTTTATA
* *
21789892 ATTTTATAAAATAA-ATTATG-ATTTTTAG
1 ATTTTTTAAAATAATATTATGAATATTTAG
* *
21789920 ATTTTTT-AAATAATTTTTTGACATATTTAG
1 ATTTTTTAAAATAATATTATGA-ATATTTAG
21789950 ATTTTTTAAAAT
1 ATTTTTTAAAAT
21789962 TATCATTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
27 6 0.18
28 10 0.29
30 14 0.41
31 4 0.12
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (30 bp):
ATTTTTTAAAATAATATTATGAATATTTAG
Found at i:21793328 original size:26 final size:26
Alignment explanation
Indices: 21793297--21793349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21793287 AGAGATAAGC
21793297 GGTTAGAAAATACAGAGCGCAAGTAT
1 GGTTAGAAAATACAGAGCGCAAGTAT
* *
21793323 GGTTAGAAAATACAGAGTGCATGTAT
1 GGTTAGAAAATACAGAGCGCAAGTAT
21793349 G
1 G
21793350 CCTTTTTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (26 bp):
GGTTAGAAAATACAGAGCGCAAGTAT
Found at i:21798128 original size:18 final size:18
Alignment explanation
Indices: 21798088--21798137 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
21798078 ACACAGATCA
*
21798088 CAAAGTTGTGAGCTCACT
1 CAAAGTTGCGAGCTCACT
*
21798106 CAAAGTTGCGAGCTCATT
1 CAAAGTTGCGAGCTCACT
* *
21798124 TAAAGATGCGAGCT
1 CAAAGTTGCGAGCT
21798138 TAACCAAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (18 bp):
CAAAGTTGCGAGCTCACT
Found at i:21802490 original size:17 final size:17
Alignment explanation
Indices: 21802439--21802523 Score: 71
Period size: 17 Copynumber: 4.8 Consensus size: 17
21802429 ATTGCATAGT
*
21802439 TGTGAGCTCATCCAAATA
1 TGTGAGCTCA-CCAAAGA
** * *
21802457 TGCAAGCTGAGCCAAAGT
1 TGTGAGCTCA-CCAAAGA
*
21802475 TTTGAGCTCACCAAAGA
1 TGTGAGCTCACCAAAGA
*
21802492 TGTGAGCTCAGCAAAGA
1 TGTGAGCTCACCAAAGA
*
21802509 TGCGAGCTCAACCAA
1 TGTGAGCTC-ACCAA
21802524 GTTGTGATCG
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
17 29 0.57
18 22 0.43
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (17 bp):
TGTGAGCTCACCAAAGA
Found at i:21804778 original size:25 final size:24
Alignment explanation
Indices: 21804750--21804803 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
21804740 ATATGGAAAA
*
21804750 AAATAACAAATATTTTTATACTAAT
1 AAATAACAAATA-TATTATACTAAT
* *
21804775 AAATGATAAATATATTATACTAAT
1 AAATAACAAATATATTATACTAAT
21804799 AAATA
1 AAATA
21804804 TTAAATCTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATAACAAATATATTATACTAAT
Found at i:21824234 original size:50 final size:50
Alignment explanation
Indices: 21824159--21824296 Score: 177
Period size: 50 Copynumber: 2.8 Consensus size: 50
21824149 TATTGAGGTT
* * * *
21824159 ATGAGAGGTCCCATTTAAGACCATGTCTTGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATATAAGACCATGTCTAGGACATGGCATGGGCACCGAG
** *
21824209 ATGAGAGGTCCCCCATAAGACCATGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATATAAGACCATGTCTAGGACATGGCATGGGCACCGAG
* ** *
21824259 TTGAGAACTCCCATGTAAGACCATGTCTAGGACATGGC
1 ATGAGAGGTCCCATATAAGACCATGTCTAGGACATGGC
21824297 TTTAACATGT
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATATAAGACCATGTCTAGGACATGGCATGGGCACCGAG
Found at i:21824530 original size:20 final size:20
Alignment explanation
Indices: 21824505--21824543 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21824495 TGAGTTATTT
*
21824505 AAATAAGCAAGTAAGTAAAC
1 AAATAAGAAAGTAAGTAAAC
*
21824525 AAATAAGAAAGTAATTAAA
1 AAATAAGAAAGTAAGTAAA
21824544 GAAGAAGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.64, C:0.05, G:0.13, T:0.18
Consensus pattern (20 bp):
AAATAAGAAAGTAAGTAAAC
Found at i:21833495 original size:12 final size:10
Alignment explanation
Indices: 21833467--21833506 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
21833457 TATGAACATG
21833467 ATTAATTTTA
1 ATTAATTTTA
21833477 ATTAATTTTA
1 ATTAATTTTA
*
21833487 TAGTTAATTTTG
1 -A-TTAATTTTA
21833499 ATTAATTT
1 ATTAATTT
21833507 GGACTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 17 0.63
11 2 0.07
12 8 0.30
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (10 bp):
ATTAATTTTA
Found at i:21849112 original size:68 final size:68
Alignment explanation
Indices: 21849032--21849170 Score: 215
Period size: 68 Copynumber: 2.0 Consensus size: 68
21849022 TGTGGGCCAC
** *
21849032 TCAGTCGGTTATATGAATATAAAAAATTTGATCTCTTTCATTATCTTCTTAGCCGAATGGATGAT
1 TCAGTCGGTTATATGAATATAAAAAATTCCATCACTTTCATTATCTTCTTAGCCGAATGGATGAT
21849097 TAA
66 TAA
* **
21849100 TCAGTCGGTTATATGAATATAGAAAATTCCATCACTTTCATTATCTTCTTAGTTGAATGGATGAT
1 TCAGTCGGTTATATGAATATAAAAAATTCCATCACTTTCATTATCTTCTTAGCCGAATGGATGAT
*
21849165 TGA
66 TAA
21849168 TCA
1 TCA
21849171 TGAGCTCTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.40
Consensus pattern (68 bp):
TCAGTCGGTTATATGAATATAAAAAATTCCATCACTTTCATTATCTTCTTAGCCGAATGGATGAT
TAA
Found at i:21851797 original size:38 final size:38
Alignment explanation
Indices: 21851755--21851858 Score: 109
Period size: 38 Copynumber: 2.7 Consensus size: 38
21851745 GGCGACGCCG
* **
21851755 TGTAAATGATTATCTACTAGTCCTTTTGGGCAACACCT
1 TGTAAATGATTATCTACTGGTCCTTTTGGGCAACACAA
** * ** *
21851793 TGTAAATGGCTATCTATTGGTCCTTCGGGGCGACACAA
1 TGTAAATGATTATCTACTGGTCCTTTTGGGCAACACAA
* *
21851831 TGTAAATAATTTTCTACTGGTCCTTTTG
1 TGTAAATGATTATCTACTGGTCCTTTTG
21851859 CGTGACACTG
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (38 bp):
TGTAAATGATTATCTACTGGTCCTTTTGGGCAACACAA
Found at i:21851873 original size:76 final size:73
Alignment explanation
Indices: 21851736--21851901 Score: 181
Period size: 76 Copynumber: 2.2 Consensus size: 73
21851726 ATTATCTAAA
* ** * *
21851736 GTCCTTCGGGGCGACGCCGTGTAAATGATTATCTACTAGTCCTTTTGGGCAACACCTTGTAAATG
1 GTCCTTCGGGGCGACACAATGTAAATAATTATCTACTAGTCCTTTTGCGCAACACCTTGTAAATG
*
21851801 GCTATCTATTG
66 G-TA--TATAG
* * **
21851812 GTCCTTCGGGGCGACACAATGTAAATAATTTTCTACTGGTCCTTTTGCGTGACA-CTGTGTAAAT
1 GTCCTTCGGGGCGACACAATGTAAATAATTATCTACTAGTCCTTTTGCGCAACACCT-TGTAAAT
21851876 GGTATATAG
65 GGTATATAG
* *
21851885 GTCCTTCGAGGTGACAC
1 GTCCTTCGGGGCGACAC
21851902 CTCAAAAGGG
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
73 19 0.25
75 4 0.05
76 54 0.70
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (73 bp):
GTCCTTCGGGGCGACACAATGTAAATAATTATCTACTAGTCCTTTTGCGCAACACCTTGTAAATG
GTATATAG
Found at i:21862006 original size:28 final size:28
Alignment explanation
Indices: 21861975--21862041 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
21861965 TATACGACAT
* * *
21861975 GCAGAAACAGTCTGGGCCTGGGCCCTAA
1 GCAGTAACAGTCTAGGCCTGAGCCCTAA
*
21862003 GCAGTAACAGTCTAGGCCTTAGCCCTAA
1 GCAGTAACAGTCTAGGCCTGAGCCCTAA
21862031 GCAGTAACAGT
1 GCAGTAACAGT
21862042 GTAATGTGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.27, T:0.18
Consensus pattern (28 bp):
GCAGTAACAGTCTAGGCCTGAGCCCTAA
Found at i:21862100 original size:28 final size:28
Alignment explanation
Indices: 21862046--21862102 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
21862036 AACAGTGTAA
* * *
21862046 TGTGGGCCTTAGCCCATTTCAGTAATAG
1 TGTGGGCCTTAGCCCAATACAGAAATAG
21862074 TGTGGGCCTTAGCCCAATACAGAAATAG
1 TGTGGGCCTTAGCCCAATACAGAAATAG
21862102 T
1 T
21862103 ATAGTGCAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (28 bp):
TGTGGGCCTTAGCCCAATACAGAAATAG
Found at i:21862466 original size:27 final size:27
Alignment explanation
Indices: 21862436--21862736 Score: 363
Period size: 27 Copynumber: 11.1 Consensus size: 27
21862426 TATCATGGTA
*
21862436 ATTTTACCCTAT-GGGGGTATTTCAGTT
1 ATTTTACCCT-TCGAGGGTATTTCAGTT
* * * *
21862463 ATTTTACCTTTCGGGGGTATTTCAATC
1 ATTTTACCCTTCGAGGGTATTTCAGTT
* *
21862490 AGTTTACCCTTCGGGGGTATTTCAGTT
1 ATTTTACCCTTCGAGGGTATTTCAGTT
* *
21862517 ATTTTACCCTTCAAGGGTATTTCAATT
1 ATTTTACCCTTCGAGGGTATTTCAGTT
21862544 ATTTTACCCTTCGAGGGTATTTCAGTT
1 ATTTTACCCTTCGAGGGTATTTCAGTT
* * *
21862571 ATTTTACCCTTTGAGGGTATTTCGGTC
1 ATTTTACCCTTCGAGGGTATTTCAGTT
* * *
21862598 ATTTTAACCTTTGAAGGTATTTCAGTT
1 ATTTTACCCTTCGAGGGTATTTCAGTT
* * *
21862625 ATTTTGCCCTTTGAGGGTATTTCAGTC
1 ATTTTACCCTTCGAGGGTATTTCAGTT
*
21862652 ATTTTACCCTTCGGGGGTATTTCAGTT
1 ATTTTACCCTTCGAGGGTATTTCAGTT
* * *
21862679 ATTTTACCATTCGAGGGTATTT-TGATC
1 ATTTTACCCTTCGAGGGTATTTCAG-TT
*
21862706 ATTTTACCCTTCGAGGGTATTTCAGTC
1 ATTTTACCCTTCGAGGGTATTTCAGTT
21862733 ATTT
1 ATTT
21862737 GCCCATGAAT
Statistics
Matches: 237, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 234 0.99
28 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCAGTT
Found at i:21873393 original size:64 final size:65
Alignment explanation
Indices: 21873323--21873449 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
21873313 GTTGTTCCGA
*
21873323 GTGTTAGTTTAGTTAATTATTATTGTA-ATTAGGCTT-TTTTGCACTTTTAGTCCCTATACCTTA
1 GTGTTAGTTAAGTTAATTATTATTGTAGATTAGGCTTATTTT-CACTTTTAGTCCCTATACCTTA
21873386 G
65 G
* *
21873387 GTGTTAGTTAAGTTAATTATTATTGTAGCTTAGGCTTATTTTCACTTTTAGTCCCTGTACCTT
1 GTGTTAGTTAAGTTAATTATTATTGTAGATTAGGCTTATTTTCACTTTTAGTCCCTATACCTT
21873450 GGTTGTAAGA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
64 26 0.45
65 28 0.48
66 4 0.07
ACGTcount: A:0.21, C:0.13, G:0.16, T:0.50
Consensus pattern (65 bp):
GTGTTAGTTAAGTTAATTATTATTGTAGATTAGGCTTATTTTCACTTTTAGTCCCTATACCTTAG
Found at i:21874976 original size:6 final size:6
Alignment explanation
Indices: 21874958--21874993 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
21874948 GCAAATGAAT
21874958 CATTTC TCATTTC CATTTC CATTTC CATTTC CATTT
1 CATTTC -CATTTC CATTTC CATTTC CATTTC CATTT
21874994 TGAGAAAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:21876884 original size:23 final size:22
Alignment explanation
Indices: 21876852--21876894 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
21876842 TTTATAACAT
* *
21876852 AAAAAAATTATTTCAAATTATC
1 AAAAAAATTAATTAAAATTATC
21876874 AAAACAAATTAATTAAAATTA
1 AAAA-AAATTAATTAAAATTA
21876895 ACATAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAAAAATTAATTAAAATTATC
Found at i:21880808 original size:13 final size:13
Alignment explanation
Indices: 21880790--21880820 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
21880780 GCACCTACCA
21880790 GCTCGCCAGGCCT
1 GCTCGCCAGGCCT
21880803 GCTCGCCAGGCCT
1 GCTCGCCAGGCCT
*
21880816 TCTCG
1 GCTCG
21880821 ACACACCTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.45, G:0.29, T:0.19
Consensus pattern (13 bp):
GCTCGCCAGGCCT
Found at i:21881127 original size:25 final size:26
Alignment explanation
Indices: 21881085--21881138 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
21881075 TTCTCCTAAA
**
21881085 TTTCAATTTTATTTAATTATTTAAT-T
1 TTTCAATTTTATAGAATTA-TTAATAT
21881111 TTTCAA-TTTATAGAATTATTAATAT
1 TTTCAATTTTATAGAATTATTAATAT
21881136 TTT
1 TTT
21881139 ATACTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 14 0.56
26 6 0.24
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (26 bp):
TTTCAATTTTATAGAATTATTAATAT
Found at i:21893022 original size:23 final size:23
Alignment explanation
Indices: 21892996--21893113 Score: 148
Period size: 23 Copynumber: 5.1 Consensus size: 23
21892986 AGTGTTATTG
21892996 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
*
21893019 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* * *
21893042 TTCTA-TAGTAGCTACGACTACAT
1 ATC-AGTGGTAGCTACGGCTACAT
* *
21893065 ATCAGTGGTAGCTACAGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
* *
21893088 ATCAGTGGTAGCTTCGACTACAT
1 ATCAGTGGTAGCTACGGCTACAT
21893111 ATC
1 ATC
21893114 GGAGTGGCAC
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
22 1 0.01
23 77 0.97
24 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:21894356 original size:49 final size:49
Alignment explanation
Indices: 21894301--21894440 Score: 217
Period size: 49 Copynumber: 2.9 Consensus size: 49
21894291 CAATAAGTGA
* *
21894301 TATGTGATTCCGTGTAAGACCGTAGTTGGGCTATGGCATCGATATATGT
1 TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGT
* * *
21894350 TATGTGATTACGTGTAAGGCCATAGCTGGGCTATGGCATCGGTATATGT
1 TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGT
* *
21894399 TATGTGATTATGTGTAAGACCATAGTTGGACTATGGCATCGA
1 TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGA
21894441 GAAAATAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 81 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.34
Consensus pattern (49 bp):
TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGT
Found at i:21896978 original size:25 final size:25
Alignment explanation
Indices: 21896950--21897076 Score: 95
Period size: 25 Copynumber: 5.1 Consensus size: 25
21896940 GCTTGTACAT
21896950 GTATGCTCAT-ACGAGCTATGAATCG
1 GTATGCTC-TCACGAGCTATGAATCG
* * *
21896975 GTATGCTCTCACAAGCTGTAAATCG
1 GTATGCTCTCACGAGCTATGAATCG
* *
21897000 GTATGCTCTCAAGAGCTGA-GATTCG
1 GTATGCTCTCACGAGCT-ATGAATCG
* *
21897025 GTAAGCTCTCAGGAG-T-TGCAATCG
1 GTATGCTCTCACGAGCTATG-AATCG
*
21897049 GTAAGCTCAT-ACGAGCTGA-GAATCG
1 GTATGCTC-TCACGAGCT-ATGAATCG
21897074 GTA
1 GTA
21897077 ATCCCTAATG
Statistics
Matches: 82, Mismatches: 12, Indels: 16
0.75 0.11 0.15
Matches are distributed among these distances:
23 1 0.01
24 18 0.22
25 62 0.76
26 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATGAATCG
Found at i:21897066 original size:49 final size:50
Alignment explanation
Indices: 21896954--21897077 Score: 137
Period size: 49 Copynumber: 2.5 Consensus size: 50
21896944 GTACATGTAT
* *
21896954 GCTCATACGAGCT-ATGAATCGGTATGCTCTCACAAGCTGTAAATCGGTAT
1 GCTCATACGAGCTGA-GAATCGGTAAGCTCTCACAAGCTGTAAATCGGTAA
* * ** * *
21897004 GCTC-TCAAGAGCTGAGATTCGGTAAGCTCTCAGGAGTTG-CAATCGGTAA
1 GCTCAT-ACGAGCTGAGAATCGGTAAGCTCTCACAAGCTGTAAATCGGTAA
21897053 GCTCATACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
21897078 TCCCTAATGA
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
49 30 0.49
50 30 0.49
51 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAATCGGTAAGCTCTCACAAGCTGTAAATCGGTAA
Found at i:21906127 original size:21 final size:21
Alignment explanation
Indices: 21906103--21906144 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
21906093 ATTAGAGTAG
21906103 AAAGAAATTGGAAAGATGAAA
1 AAAGAAATTGGAAAGATGAAA
21906124 AAAGAAATTGGAAAGATGAAA
1 AAAGAAATTGGAAAGATGAAA
21906145 TTTTGAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.14
Consensus pattern (21 bp):
AAAGAAATTGGAAAGATGAAA
Found at i:21908369 original size:40 final size:40
Alignment explanation
Indices: 21908251--21908370 Score: 159
Period size: 40 Copynumber: 3.0 Consensus size: 40
21908241 GCACACCAGT
* *
21908251 TTGTGGACAAGCCACCAATAATGCAGATAAACTGCCAGTA
1 TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCTAGTA
* * * *
21908291 TTATGGACAAGTCACCAGTAATACAGATAAACTACTAGTA
1 TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCTAGTA
* * *
21908331 TTGTGGACAAGCCACCAGTATTGCAGACAAGCTGCTAGTA
1 TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCTAGTA
21908371 ATTCCTCCAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (40 bp):
TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCTAGTA
Found at i:21918325 original size:3 final size:3
Alignment explanation
Indices: 21918319--21918395 Score: 129
Period size: 3 Copynumber: 25.7 Consensus size: 3
21918309 CGTCTTTTTT
*
21918319 TTC TTC TTC TCC TTC TTC TTC TTC TTTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC
21918365 TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
21918396 TTATTTTCTA
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.03
3 65 0.93
4 3 0.04
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:21918954 original size:12 final size:12
Alignment explanation
Indices: 21918937--21918978 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
21918927 CGCGACACGA
21918937 CCATGTGTCAGG
1 CCATGTGTCAGG
21918949 CCATGTGGT-AGG
1 CCATGT-GTCAGG
* *
21918961 CTATGTGCCAGG
1 CCATGTGTCAGG
21918973 CCATGT
1 CCATGT
21918979 AGAGCACATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.88
13 2 0.08
ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26
Consensus pattern (12 bp):
CCATGTGTCAGG
Found at i:21919336 original size:22 final size:23
Alignment explanation
Indices: 21919286--21919341 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
21919276 TTTATATGAA
**
21919286 AATATGTGAGTATGCATATCGTAT
1 AATATGTGA-TATAAATATCGTAT
21919310 AATATGTGATATAAATAT-GTAT
1 AATATGTGATATAAATATCGTAT
* *
21919332 GATATATGAT
1 AATATGTGAT
21919342 TATGATATGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 12 0.43
23 7 0.25
24 9 0.32
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (23 bp):
AATATGTGATATAAATATCGTAT
Found at i:21919626 original size:22 final size:22
Alignment explanation
Indices: 21919598--21919642 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
21919588 TAAGATATGC
*
21919598 TATGTTATGATTCGATATAATA
1 TATGTTATGATTCAATATAATA
* *
21919620 TATGTTATGCTTCAATATGATA
1 TATGTTATGATTCAATATAATA
21919642 T
1 T
21919643 GATACGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (22 bp):
TATGTTATGATTCAATATAATA
Found at i:21931057 original size:37 final size:37
Alignment explanation
Indices: 21931015--21931089 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
21931005 GACATATATG
*
21931015 TCATTTTTATAATTAATTTAAAATACTAGGTTGATTT
1 TCATTTTTATAATGAATTTAAAATACTAGGTTGATTT
*
21931052 TCATTTTTATAATGAATTTAAAATATTAGGTTGATTT
1 TCATTTTTATAATGAATTTAAAATACTAGGTTGATTT
21931089 T
1 T
21931090 TTTTTTCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.52
Consensus pattern (37 bp):
TCATTTTTATAATGAATTTAAAATACTAGGTTGATTT
Found at i:21934251 original size:18 final size:17
Alignment explanation
Indices: 21934208--21934268 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 17
21934198 TAATTTTTGT
21934208 ATAAATTTATAAAAAAA
1 ATAAATTTATAAAAAAA
21934225 TATTAAAATTTATAAAAATAA
1 -A-T-AAATTTATAAAAA-AA
*
21934246 ATAAATTTAAAAATAAAA
1 ATAAATTTATAAA-AAAA
21934264 ATAAA
1 ATAAA
21934269 AATAAATAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
18 18 0.47
19 4 0.11
20 14 0.37
21 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAAATTTATAAAAAAA
Found at i:21934258 original size:16 final size:14
Alignment explanation
Indices: 21934236--21934282 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 14
21934226 ATTAAAATTT
21934236 ATAAAAATAAATAA
1 ATAAAAATAAATAA
21934250 ATTTAAAAAT-AA-AA
1 A--TAAAAATAAATAA
21934264 ATAAAAATAAATAA
1 ATAAAAATAAATAA
21934278 A-AAAA
1 ATAAAA
21934283 TTTAAAAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
12 7 0.24
13 6 0.21
14 7 0.24
15 2 0.07
16 7 0.24
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAAAATAAATAA
Found at i:21934271 original size:38 final size:38
Alignment explanation
Indices: 21934208--21934280 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
21934198 TAATTTTTGT
* * **
21934208 ATAAATTTATAAAAAAATATTAAAATTTATAAAAATAA
1 ATAAATTTATAAAAAAAAATAAAAATAAATAAAAATAA
21934246 ATAAATTTA-AAAATAAAAATAAAAATAAATAAAAA
1 ATAAATTTATAAAA-AAAAATAAAAATAAATAAAAA
21934281 AATTTAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 4 0.13
38 26 0.87
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (38 bp):
ATAAATTTATAAAAAAAAATAAAAATAAATAAAAATAA
Found at i:21944521 original size:46 final size:46
Alignment explanation
Indices: 21944380--21944672 Score: 385
Period size: 46 Copynumber: 6.6 Consensus size: 46
21944370 TACGTAAGAT
*
21944380 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* * *
21944424 CACTTATCACTTTGTCACTTGATAAAAAAAAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGAT--CAGATAAGTGTAGCTAAGGCTAC
21944472 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* * *
21944518 CACTTATCACTTTGTCACTTGATCAGATAACTGTAGCTAAAGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
21944564 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-A-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
21944600 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
21944646 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
21944673 AGTACTCAAA
Statistics
Matches: 222, Mismatches: 13, Indels: 26
0.85 0.05 0.10
Matches are distributed among these distances:
36 29 0.13
38 3 0.01
40 2 0.01
41 2 0.01
42 2 0.01
44 13 0.06
45 5 0.02
46 123 0.55
48 43 0.19
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:21944605 original size:36 final size:36
Alignment explanation
Indices: 21944564--21944636 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
21944554 CTAAAGCTAA
21944564 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
* *
21944600 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
21944636 C
1 C
21944637 TAAAGCTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:21944607 original size:82 final size:82
Alignment explanation
Indices: 21944518--21944672 Score: 265
Period size: 82 Copynumber: 1.9 Consensus size: 82
21944508 CTAAGGCTAC
*
21944518 CACTTATCACTTTGTCACTTGATCAGATAACTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAACTGTAGCTAAAGCTAACACTTATCACTTTATCACT
21944583 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
* * * *
21944600 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAACTGTAGCTAAAGCTAACACTTATCACTTTATCACT
21944665 TGATCAGA
66 TGATCAGA
21944673 AGTACTCAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 68 1.00
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAACTGTAGCTAAAGCTAACACTTATCACTTTATCACT
TGATCAGATAAGTATAG
Found at i:21966591 original size:56 final size:56
Alignment explanation
Indices: 21966505--21966680 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
21966495 ACAAGGGATG
21966505 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
21966561 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
21966617 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
21966673 ATGGGCAA
1 ATGGGCAA
21966681 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:21967389 original size:40 final size:40
Alignment explanation
Indices: 21967305--21967529 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
21967295 TCGAATGATG
* * * *
21967305 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
21967345 TCCGGACTAAGAT-CCGAAGGCATTTGCGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
21967385 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
*
21967424 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
21967464 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
21967505 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
21967530 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 3 0.02
39 30 0.18
40 118 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:21967518 original size:80 final size:80
Alignment explanation
Indices: 21967305--21967529 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
21967295 TCGAATGATG
* * * * *
21967305 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
21967368 TTGCGCGAGATACTAAT
64 TTGCGCGAGATACTAAA
*
21967385 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
* *
21967447 TTGTGCGAGTTACTAAA
64 TTGCGCGAGATACTAAA
* *
21967464 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
21967529 G
66 G
21967530 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 60 0.48
80 59 0.47
81 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GCGCGAGATACTAAA
Found at i:21967552 original size:119 final size:119
Alignment explanation
Indices: 21967305--21967536 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 119
21967295 TCGAATGATG
* *
21967305 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
21967370 GCGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAAA
66 GCGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAAA
* * * **
21967424 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
21967487 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGA-ACGAGT
64 TTGCGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCA-TTGATACGAGT
21967537 AGCTATATCT
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
118 3 0.03
119 67 0.70
120 22 0.23
121 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GCGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAAA
Found at i:21972833 original size:23 final size:22
Alignment explanation
Indices: 21972790--21972833 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
21972780 TTGTAAGTCG
21972790 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
21972813 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
21972834 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:21972914 original size:45 final size:45
Alignment explanation
Indices: 21972863--21972956 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
21972853 AACAGATACT
* *
21972863 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
21972908 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
21972953 CGGT
1 CGGT
21972957 TCACATAGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:21973020 original size:51 final size:50
Alignment explanation
Indices: 21972953--21973137 Score: 228
Period size: 51 Copynumber: 3.7 Consensus size: 50
21972943 CAATGATGTT
* *
21972953 CGGTTCACATAGTAGCCTACACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCA-TACCATC
* * * * *
21973004 CGATACACGTAGTAGCCTACACATAGTACTACACATGTGATCGAAACTATT
1 CGGTACACGTAGTAGCCTACACATAGTACTACACATGTGA-CCATACCATC
* * * *
21973055 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGTGACC-TATCATTC
1 CGGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCATACCA-TC
*
21973105 CGGTACACGTAGTAGCCTGCACATAGTACTACA
1 CGGTACACGTAGTAGCCTACACATAGTACTACA
21973138 TACATGACCA
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.02
50 33 0.29
51 77 0.68
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCATACCATC
Found at i:21973168 original size:101 final size:101
Alignment explanation
Indices: 21972958--21973144 Score: 259
Period size: 101 Copynumber: 1.8 Consensus size: 101
21972948 ATGTTCGGTT
21972958 CACATAGTAGCCTACACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTA
1 CACATAGTAGCCTACACATAGTACTACACATGTGACCA-TACCATCCGATACACGTAGTAGCCTA
** * *
21973023 CACATAGTACTACACATGTGATCGAAACTATTCGGTA
65 CACATAGTACTACACACATGATCCAAACTATTCCGTA
* * * * *
21973060 CGCATAGTAGCCTGCACATAGTACTACACATGTGACC-TATCATTCCGGTACACGTAGTAGCCTG
1 CACATAGTAGCCTACACATAGTACTACACATGTGACCATACCA-TCCGATACACGTAGTAGCCTA
*
21973124 CACATAGTACTACATACATGA
65 CACATAGTACTACACACATGA
21973145 CCATCACTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
100 4 0.05
101 37 0.49
102 35 0.46
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
CACATAGTAGCCTACACATAGTACTACACATGTGACCATACCATCCGATACACGTAGTAGCCTAC
ACATAGTACTACACACATGATCCAAACTATTCCGTA
Found at i:21976825 original size:42 final size:42
Alignment explanation
Indices: 21976765--21976848 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
21976755 TAACCTAATT
* * * *
21976765 GGGAAAATAATTCCCTTATTCTAGTAAACTACTAGAAGATAA
1 GGGAAAATAATTACCTTATTATAATAAACTACTAAAAGATAA
*
21976807 GGGAAAATAATTATCTTATTATAATAAACTACTAAAAGATAA
1 GGGAAAATAATTACCTTATTATAATAAACTACTAAAAGATAA
21976849 AATAAAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.30
Consensus pattern (42 bp):
GGGAAAATAATTACCTTATTATAATAAACTACTAAAAGATAA
Found at i:21976908 original size:19 final size:19
Alignment explanation
Indices: 21976886--21976931 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
21976876 TGATTTATTC
21976886 TAAGATTTATCTA-CATAAA
1 TAAGATTTATCTATC-TAAA
21976905 TAAGATTTATCTATCTAAA
1 TAAGATTTATCTATCTAAA
21976924 TAA-ATTTA
1 TAAGATTTA
21976932 AAATATATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.19
19 20 0.77
20 1 0.04
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (19 bp):
TAAGATTTATCTATCTAAA
Found at i:21981584 original size:42 final size:42
Alignment explanation
Indices: 21981525--21981608 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
21981515 TAACCTAATT
*
21981525 GGGAAAATAATTCCCTTATTCTAGTAAACTACTAAAAGATAA
1 GGGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
21981567 GGGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
21981609 AATAAAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.29
Consensus pattern (42 bp):
GGGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
Found at i:21981670 original size:19 final size:19
Alignment explanation
Indices: 21981646--21981691 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
21981636 TGGTTTATTC
21981646 TAAGATTTATCTA-CATAAA
1 TAAGATTTATCTATC-TAAA
21981665 TAAGATTTATCTATCTAAA
1 TAAGATTTATCTATCTAAA
21981684 TAA-ATTTA
1 TAAGATTTA
21981692 AAATATATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.19
19 20 0.77
20 1 0.04
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (19 bp):
TAAGATTTATCTATCTAAA
Found at i:21989800 original size:18 final size:18
Alignment explanation
Indices: 21989777--21989814 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
21989767 ATGGACATGT
* *
21989777 CACACGGGCGTGTGGGCC
1 CACACGGGCATGTGGACC
21989795 CACACGGGCATGTGGACC
1 CACACGGGCATGTGGACC
21989813 CA
1 CA
21989815 GGATTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.34, G:0.37, T:0.11
Consensus pattern (18 bp):
CACACGGGCATGTGGACC
Found at i:21995412 original size:37 final size:37
Alignment explanation
Indices: 21995362--21995440 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
21995352 TTGAGGCTAA
*
21995362 AATTTCTTTTAGGGGGTAGAGTTGTAACGCCTTGAAT
1 AATTTCTTTTAGGGGGTAGAGTTGTAACGCCCTGAAT
*
21995399 AATTTCTTTTAGGGGGTTGAGTTGTAACGCCCTGAAT
1 AATTTCTTTTAGGGGGTAGAGTTGTAACGCCCTGAAT
21995436 AATTT
1 AATTT
21995441 AAGTTTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.24, C:0.11, G:0.25, T:0.39
Consensus pattern (37 bp):
AATTTCTTTTAGGGGGTAGAGTTGTAACGCCCTGAAT
Found at i:21998956 original size:25 final size:26
Alignment explanation
Indices: 21998899--21998957 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
21998889 GTCCCGATAT
21998899 ATGGCTCTTCGTGAGCTTCCTGATTA
1 ATGGCTCTTCGTGAGCTTCCTGATTA
* *
21998925 AAGGCTCTTTGTGAGCTTCCTG-TTA
1 ATGGCTCTTCGTGAGCTTCCTGATTA
21998950 ATGGCTCT
1 ATGGCTCT
21998958 CCAGAGCTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (26 bp):
ATGGCTCTTCGTGAGCTTCCTGATTA
Found at i:21998998 original size:25 final size:25
Alignment explanation
Indices: 21998968--21999056 Score: 117
Period size: 25 Copynumber: 3.6 Consensus size: 25
21998958 CCAGAGCTTC
21998968 CCAATATTGGCTCGCTTGAACCTTT
1 CCAATATTGGCTCGCTTGAACCTTT
*
21998993 CCAATATTGGCTCGCTTGAACCTTC
1 CCAATATTGGCTCGCTTGAACCTTT
* * *
21999018 CCGATATTGGCTTGCTTGAATC-TT
1 CCAATATTGGCTCGCTTGAACCTTT
*
21999042 CCTGATATTGGCTCG
1 CC-AATATTGGCTCG
21999057 TATGAGCTTC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 3 0.05
25 54 0.95
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (25 bp):
CCAATATTGGCTCGCTTGAACCTTT
Found at i:21999077 original size:24 final size:24
Alignment explanation
Indices: 21999039--21999130 Score: 89
Period size: 24 Copynumber: 3.8 Consensus size: 24
21999029 TTGCTTGAAT
* *
21999039 CTTCCTGATATTGGCTCGTATGAG
1 CTTCCTGTTAATGGCTCGTATGAG
*
21999063 CTTCCTGTTAATGGCTC-TCTGGAG
1 CTTCCTGTTAATGGCTCGTAT-GAG
**
21999087 CTT-CTCGTTACATGGCTCACATGAG
1 CTTCCT-GTTA-ATGGCTCGTATGAG
21999112 CTTCCTGTTAAATGGCTCG
1 CTTCCTGTT-AATGGCTCG
21999131 AGAGAGAGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
23 4 0.07
24 25 0.45
25 23 0.41
26 4 0.07
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (24 bp):
CTTCCTGTTAATGGCTCGTATGAG
Found at i:22009379 original size:18 final size:19
Alignment explanation
Indices: 22009356--22009392 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
22009346 AAATGTTAAA
*
22009356 AATTAAATTTAT-TATAAT
1 AATTAAAATTATGTATAAT
22009374 AATTAAAATTATGTATAAT
1 AATTAAAATTATGTATAAT
22009393 TGATGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
AATTAAAATTATGTATAAT
Found at i:22016494 original size:6 final size:6
Alignment explanation
Indices: 22016483--22016515 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
22016473 GATTTTAGAT
*
22016483 TTTTAG TTTTAG TTTTAA TTTTAG TTTTAG TTT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTT
22016516 CGTTATCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.70
Consensus pattern (6 bp):
TTTTAG
Found at i:22018654 original size:20 final size:22
Alignment explanation
Indices: 22018629--22018669 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
22018619 TAAATATATT
22018629 AATATATTAT-TTA-ATTATAA
1 AATATATTATATTATATTATAA
22018649 AATATATTATATTATATTATA
1 AATATATTATATTATATTATA
22018670 TTATATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 3 0.16
22 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATATTATATTATATTATAA
Found at i:22018661 original size:5 final size:5
Alignment explanation
Indices: 22018623--22018678 Score: 57
Period size: 5 Copynumber: 11.6 Consensus size: 5
22018613 ATGTTTTAAA
*
22018623 TATAT TA-A- TATAT TAT-T TA-AT TATAAAA TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TAT--AT TATAT TATAT TATAT TATAT
22018671 TATAT TAT
1 TATAT TAT
22018679 TATGTAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
3 2 0.05
4 8 0.19
5 29 0.67
7 4 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (5 bp):
TATAT
Found at i:22020966 original size:5 final size:5
Alignment explanation
Indices: 22020956--22020981 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22020946 TGAGCATTCG
22020956 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
22020982 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:22021091 original size:21 final size:20
Alignment explanation
Indices: 22021045--22021091 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
22021035 TGAAGTTTTC
*
22021045 TCGAATTGAGTCGAGTGAGA
1 TCGAATTGAGTCGAATGAGA
*
22021065 TGGAATTCGAGTCGAATCGA-A
1 TCGAATT-GAGTCGAAT-GAGA
22021086 TCGAAT
1 TCGAAT
22021092 GTATTTGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 6 0.27
21 14 0.64
22 2 0.09
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (20 bp):
TCGAATTGAGTCGAATGAGA
Found at i:22022020 original size:9 final size:9
Alignment explanation
Indices: 22022006--22022042 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22021996 TATAGTTTGA
22022006 TATTCGAAT
1 TATTCGAAT
22022015 TATTCGAAT
1 TATTCGAAT
*
22022024 TATTCGAGT
1 TATTCGAAT
22022033 TATTCGAAT
1 TATTCGAAT
22022042 T
1 T
22022043 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22027168 original size:22 final size:22
Alignment explanation
Indices: 22027143--22027193 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 22
22027133 TCTTAACTCT
22027143 TATTTACTGAA-ATATTTAGGCG
1 TATTTACT-AATATATTTAGGCG
*
22027165 TATTTTCTAACTTATATTTAGGCG
1 TATTTACTAA--TATATTTAGGCG
22027189 TATTT
1 TATTT
22027194 TCTTTGCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 7 0.28
24 16 0.64
ACGTcount: A:0.27, C:0.10, G:0.14, T:0.49
Consensus pattern (22 bp):
TATTTACTAATATATTTAGGCG
Found at i:22030769 original size:99 final size:99
Alignment explanation
Indices: 22030514--22030998 Score: 544
Period size: 99 Copynumber: 4.9 Consensus size: 99
22030504 TAACTCGTAA
** * * * * *
22030514 CTTTAATCTATTTAACTGTGATGTCAGGAAAGTAAGATTCGCTGTCGTAGCTTTAATCTATTCCA
1 CTTTAATCT-TTTAACTGCAATGTCGGGAAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* *
22030579 TTACACCG-CTAGGGAAGTAAGATTCACCGTTGT-G
65 CTGCACCGCCT-GGGAAGTAAGATTCACCGTTGTAG
* * * * *
22030613 ACTTCAATCTTCTTAACTGCAATTTCGGGGAAGGAAGATTCACTGTTGTAGCTTCAATCTGTTCC
1 -CTTTAATCTT-TTAACTGCAATGTCGGGAAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
*
22030678 ACTGCACCGCCTGAGAAGTAAGATTCACCGTTGTAG
64 ACTGCACCGCCTGGGAAGTAAGATTCACCGTTGTAG
* * * * *
22030714 CTTTAATATTTTAACTGCAATGTCGGGAAAACAAGATTCGCCGTTGTGGCTTCAATCTGTTCCAT
1 CTTTAATCTTTTAACTGCAATGTCGGGAAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCAC
* * * * *
22030779 TCCACTGCTTGGGAAGTAAGATTCGCTGTTGTAG
66 TGCACCGCCTGGGAAGTAAGATTCACCGTTGTAG
* * * * * *
22030813 CTTCAATCTTTTAACTGGAATGTTGGGAAAACAAGATTCGCTATTGTGGCTTCAATCTGTTCCAC
1 CTTTAATCTTTTAACTGCAATGTCGGGAAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCAC
* **
22030878 TGCACCGCCTGAGAAGTAAGATTCGTCGTTGTAG
66 TGCACCGCCTGGGAAGTAAGATTCACCGTTGTAG
* * ** *
22030912 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAATG-TTCGCCATTGTTGCTTCAATCTGTTCC
1 CTTTAATC-TTTTAACTGCAATGTCGGGAAAGCAA-GATTCGCTGTTGTAGCTTCAATCTGTTCC
22030976 ACTGCACCGCCTGGGAAGTAAGA
64 ACTGCACCGCCTGGGAAGTAAGA
22030999 CCTGTAGCGA
Statistics
Matches: 328, Mismatches: 52, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
99 169 0.52
100 155 0.47
101 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (99 bp):
CTTTAATCTTTTAACTGCAATGTCGGGAAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCAC
TGCACCGCCTGGGAAGTAAGATTCACCGTTGTAG
Found at i:22030980 original size:50 final size:50
Alignment explanation
Indices: 22030590--22030981 Score: 274
Period size: 50 Copynumber: 7.9 Consensus size: 50
22030580 TACACCGCTA
* ** *
22030590 GGGAAGTAAGATTCACCGTTGT-GACTTCAATCT-TCTTAACTGCAATTTCG
1 GGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTGT-TCCACTGCAATGTCG
* * * ** * *
22030640 GGGAAGGAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAATGTCG
* * * * **
22030690 GAGAAGTAAGATTCACCGTTGTAGCTTTAATAT-TTTAACTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAATGTCG
* ** * * * * *
22030739 GGAAAACAAGATTCGCCGTTGTGGCTTCAATCTGTTCCATTCCACTG-CTT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAATGTC-G
* ** * *
22030789 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCT-TTTAACTGGAATGTTG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAATGTCG
* ** ** * ** * *
22030838 GGAAAACAAGATTCGCTATTGTGGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAATGTCG
* * * * **
22030888 GAGAAGTAAGATTCGTCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAATGTCG
* *
22030938 GGGAAGTAATG-TTCGCCATTGTTGCTTCAATCTGTTCCACTGCA
1 GGGAAGTAA-GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCA
22030982 CCGCCTGGGA
Statistics
Matches: 251, Mismatches: 84, Indels: 14
0.72 0.24 0.04
Matches are distributed among these distances:
49 71 0.28
50 177 0.71
51 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAATGTCG
Found at i:22030992 original size:50 final size:50
Alignment explanation
Indices: 22030543--22030998 Score: 244
Period size: 50 Copynumber: 9.2 Consensus size: 50
22030533 GATGTCAGGA
** * * * * *
22030543 AAGTAAGATTCGCTGTCGTAGCTTTAATCTATTCCATTACACCG-CTAGGG
1 AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCT-GGG
* * ** **** *
22030593 AAGTAAGATTCACCGTTGT-GACTTCAATCT-TCTTAACTGCAATTTCGGGG
1 AAGTAAGATTCGCCATTGTAG-CTTCAATCTGT-TCCACTGCACCGCCTGGG
* * ** *
22030643 AAGGAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGAG
1 AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
* * * * ** ** *
22030693 AAGTAAGATTCACCGTTGTAGCTTTAATAT-TTTAACTGCAATGTC-GGG
1 AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
** * * * * * *
22030741 AAAACAAGATTCGCCGTTGTGGCTTCAATCTGTTCCATTCCACTGCTTGGG
1 -AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
** ** * ** *
22030792 AAGTAAGATTCGCTGTTGTAGCTTCAATCT-TTTAACTGGAATG-TTGGG
1 AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
** * * *
22030840 AAAACAAGATTCGCTATTGTGGCTTCAATCTGTTCCACTGCACCGCCTGAG
1 -AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
* * * * ** ** * *
22030891 AAGTAAGATTCGTCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
*
22030941 AAGTAATG-TTCGCCATTGTTGCTTCAATCTGTTCCACTGCACCGCCTGGG
1 AAGTAA-GATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
22030991 AAGTAAGA
1 AAGTAAGA
22030999 CCTGTAGCGA
Statistics
Matches: 301, Mismatches: 92, Indels: 26
0.72 0.22 0.06
Matches are distributed among these distances:
48 7 0.02
49 70 0.23
50 214 0.71
51 10 0.03
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (50 bp):
AAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGG
Found at i:22031381 original size:88 final size:87
Alignment explanation
Indices: 22031306--22031584 Score: 288
Period size: 88 Copynumber: 3.2 Consensus size: 87
22031296 ATAGGATTAT
* * * * * * ** *
22031306 TGGCTTCGATCTGCTTCATTGCTAATACAAGAAGGCAAGATCTGGTGTTTTTGACCTGCTCCGTT
1 TGGCTTCGATCTACTTCACTGCCAATACAAGAAGGCAAGATCTGCTATCTTCAACCTGCTCCGCT
22031371 GCAACCCAGGGAGGCAAGGCTAG
66 GCAACCCAGGGA-GCAAGGCTAG
* * * *
22031394 TGTCTTCGATCTACTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCGCT
1 TGGCTTCGATCTACTTCACTGCCAATACAAGAAGGCAAGATCTGCTATCTTCAACCTGCTCCGCT
22031459 GCAACCCAGGGAGGCAAGGCTAG
66 GCAACCCAGGGA-GCAAGGCTAG
* ** ** * * * * *
22031482 TGTCTTCGATCTGTTTCACTGTTAGTATAGGAAGGCAAGATCTGCTATCTTCAACCTGATCTGCT
1 TGGCTTCGATCTACTTCACTGCCAATACAAGAAGGCAAGATCTGCTATCTTCAACCTGCTCCGCT
* *
22031547 GTAACCCCGGGAGGCAAGGCTAG
66 GCAACCCAGGGA-GCAAGGCTAG
* *
22031570 TGTCTTCGATTTACT
1 TGGCTTCGATCTACT
22031585 CTACTATTGC
Statistics
Matches: 165, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 165 1.00
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (87 bp):
TGGCTTCGATCTACTTCACTGCCAATACAAGAAGGCAAGATCTGCTATCTTCAACCTGCTCCGCT
GCAACCCAGGGAGCAAGGCTAG
Found at i:22031430 original size:44 final size:43
Alignment explanation
Indices: 22031377--22031520 Score: 110
Period size: 44 Copynumber: 3.3 Consensus size: 43
22031367 CGTTGCAACC
* *
22031377 CAGGGAGGCAAGGCTAGTGTCTTCGATCTACTTCGCTGCCAGTA
1 CAGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTG-CAGTA
* * * * * ***
22031421 CAGGAAGGCAAGATCT-GCTATCTTCAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAG-GCTAG-TGTCTTCGATCTGCTTCGCTGCAGTA
* * * *
22031465 CAGGGAGGCAAGGCTAGTGTCTTCGATCTGTTTCACTGTTAGTA
1 CAGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTG-CAGTA
*
22031509 TAGGAAGGCAAG
1 CAGGAAGGCAAG
22031521 ATCTGCTATC
Statistics
Matches: 72, Mismatches: 24, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
43 17 0.24
44 37 0.51
45 18 0.25
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (43 bp):
CAGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGCAGTA
Found at i:22031459 original size:45 final size:44
Alignment explanation
Indices: 22031410--22031539 Score: 102
Period size: 44 Copynumber: 2.9 Consensus size: 44
22031400 CGATCTACTT
22031410 CGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
1 CGCTG-CAGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
*** * * * * * * *
22031455 CGCTGCAACCCAGGGAGGCAAG-GCTAG-TGTCTTCGATCTGTTT
1 CGCTGCAGTACAGGAAGGCAAGATCT-GCTATCTTCAACCTGCTC
* * *
22031498 CACTGTTAGTATAGGAAGGCAAGATCTGCTATCTTCAACCTG
1 CGCTG-CAGTACAGGAAGGCAAGATCTGCTATCTTCAACCTG
22031540 ATCTGCTGTA
Statistics
Matches: 60, Mismatches: 21, Indels: 8
0.67 0.24 0.09
Matches are distributed among these distances:
43 17 0.28
44 26 0.43
45 17 0.28
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (44 bp):
CGCTGCAGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
Found at i:22032927 original size:21 final size:21
Alignment explanation
Indices: 22032903--22032946 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
22032893 TTAGCCTCTC
*
22032903 CATTTTTACTTTTTCATTTTT
1 CATTTTCACTTTTTCATTTTT
* *
22032924 CATTTTCATTTTTTTATTTTT
1 CATTTTCACTTTTTCATTTTT
22032945 CA
1 CA
22032947 CATTTTTTCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (21 bp):
CATTTTCACTTTTTCATTTTT
Found at i:22032929 original size:13 final size:14
Alignment explanation
Indices: 22032903--22032936 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
22032893 TTAGCCTCTC
*
22032903 CATTTTTACTTTTT
1 CATTTTTACATTTT
22032917 CATTTTT-CATTTT
1 CATTTTTACATTTT
22032930 CATTTTT
1 CATTTTT
22032937 TTATTTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTACATTTT
Found at i:22033794 original size:29 final size:30
Alignment explanation
Indices: 22033757--22033826 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
22033747 GATTTTGATT
* * *
22033757 TTTTCTTTTTTCATTTTTTC-TTTCTTTT-C
1 TTTTGTTTTTTC-TATTTTCATTTCTTTTGA
*
22033786 TTTTGTTTTTTCTATTTTCATTTTTTTTGA
1 TTTTGTTTTTTCTATTTTCATTTCTTTTGA
22033816 TTTTGTTTTTT
1 TTTTGTTTTTT
22033827 TGATTGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.17
29 18 0.51
30 11 0.31
ACGTcount: A:0.06, C:0.10, G:0.04, T:0.80
Consensus pattern (30 bp):
TTTTGTTTTTTCTATTTTCATTTCTTTTGA
Found at i:22033824 original size:15 final size:14
Alignment explanation
Indices: 22033749--22033845 Score: 63
Period size: 15 Copynumber: 6.6 Consensus size: 14
22033739 TTGATTTTGA
22033749 TTTTGATTTTTTCTT
1 TTTTGATTTTTT-TT
*
22033764 TTTTCATTTTTTCTT
1 TTTTGATTTTTT-TT
**
22033779 TCTTTTCTTTTGTTTT
1 T-TTTGATTTT-TTTT
*
22033795 TTCT-ATTTTCATTTT
1 TTTTGATTTT--TTTT
*
22033810 TTTTGATTTTGTTT
1 TTTTGATTTTTTTT
**
22033824 TTTTGATTGATTTT
1 TTTTGATTTTTTTT
22033838 TTTT-ATTT
1 TTTTGATTT
22033846 CGATTTTTCT
Statistics
Matches: 66, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
13 3 0.05
14 22 0.33
15 24 0.36
16 15 0.23
17 2 0.03
ACGTcount: A:0.08, C:0.07, G:0.06, T:0.78
Consensus pattern (14 bp):
TTTTGATTTTTTTT
Found at i:22033850 original size:15 final size:15
Alignment explanation
Indices: 22033791--22033853 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
22033781 TTTTCTTTTG
*
22033791 TTTTTTCTATTTTC-A
1 TTTTTTTTA-TTTCGA
*
22033806 TTTTTTTTGATTTTG-
1 TTTTTTTT-ATTTCGA
*
22033821 TTTTTTTGA-TT-GA
1 TTTTTTTTATTTCGA
22033834 TTTTTTTTATTTCGA
1 TTTTTTTTATTTCGA
22033849 TTTTT
1 TTTTT
22033854 CTTTTCTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
12 1 0.03
13 10 0.26
14 3 0.08
15 24 0.62
16 1 0.03
ACGTcount: A:0.11, C:0.05, G:0.08, T:0.76
Consensus pattern (15 bp):
TTTTTTTTATTTCGA
Found at i:22047512 original size:44 final size:44
Alignment explanation
Indices: 22047439--22048424 Score: 166
Period size: 44 Copynumber: 22.5 Consensus size: 44
22047429 CCAAGCCTTG
* * * * *
22047439 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
* * *
22047483 TATCCCTAAGCAGTAGTGGAGAAGATTGAAGATGGAAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
* * * ** * *
22047527 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG-ATTGAAGATCTTA
* * * * * *
22047570 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
** ** *
22047614 TCTCCCTAAGCAGTAGTGGAGAAGATCAAAGACGGCAA-ATTTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTG-AAGATCTTA
* * ** * *
22047658 TCTTTCC-AAG-A-TAGTGG-GAAGCATATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGTGGAGAAG---ATTGAAG--ATTGAAGATCTTA
* * * * * ** *
22047702 TCTCCTTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
* ** *
22047746 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAA-ATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTG-AAGATCTTA
* * * * ** * *
22047790 TATTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCA-CCAAG-CCTTG
1 T-CTCCCTAAGCAGTAGT-GG-AGAAGATTGAAG-ATTGAAGATCTTA
* * * * * *
22047833 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
* * *** *
22047877 TCTCCCTAAGCCGTAGTGGAGCAGAACAAAGATGGCAA-ATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTG-AAGATCTTA
* * * ** * *
22047921 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG--ATTGAAGATCTTA
* ** * * *
22047965 TCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
* ** *
22048009 TCTCCCTAAGCAATAGTGGAGAAGATTGAAGACAGAAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
* * * ** * *
22048053 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG--ATTGAAGATCTTA
* * * * *
22048097 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAA-ATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTG-AAGATCTTA
* **
22048141 TCTCCCTAAGCAGTAGTGGAGAAGATCGAAGACGGCAA-ATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTG-AAGATCTTA
* * * * ** * *
22048185 TCTTTCC-AAG-A-TAGGGGAAGCAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGTGG-AGAAGATTGAAG--ATTGAAGATCTTA
* * * * ** *
22048228 TCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
* * ** *
22048272 TCTCCCTAAGCAGTAATGGAGCAGATCAAAGA-TGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGA-AGATCTTA
* * * ** * *
22048316 TCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG--ATTGAAGATCTTA
* * * * * *
22048360 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
22048404 TCTCCCTAAGCAGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAG
22048425 CAGAACAAAG
Statistics
Matches: 646, Mismatches: 218, Indels: 156
0.63 0.21 0.15
Matches are distributed among these distances:
41 4 0.01
42 46 0.07
43 92 0.14
44 437 0.68
45 48 0.07
46 16 0.02
47 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGATTGAAGATCTTA
Found at i:22047766 original size:263 final size:264
Alignment explanation
Indices: 22047299--22048750 Score: 2390
Period size: 263 Copynumber: 5.5 Consensus size: 264
22047289 GTGAAACACT
* * **
22047299 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCATAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * * *
22047364 TAGTGGAGTAGATCGAGGACGGTAAATCTTATCTTTCCAAGATAGTCGGAAGCAAATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
22047429 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATATCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* **
22047494 AGTAGTGGAGAAGATTGAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG-
196 AGTAGTGGAGCAGATCAAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
22047558 CACC
261 CACC
22047562 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
22047627 TAGTGGAGAAGATCAAAGACGGCAAATTTTATCTTTCCAAGATAGTGGGAAGCATATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
22047692 CCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* *
22047757 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATATTTCCAAGATAGTGGGAAGCAGATTTAAG-
196 AGTAGTGGAGCAGATCAAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
22047821 CACC
261 CACC
*
22047825 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCCG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22047890 TAGTGGAGCAGAACAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
22047955 CCAAGCCTTGTCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* * ** **
22048020 AATAGTGGAGAAGATTGAAGACAGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
196 AGTAGTGGAGCAGATCAAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
22048085 CACC
261 CACC
*
22048089 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22048154 TAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAG-GGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
22048218 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* *
22048283 AGTAATGGAGCAGATCAAAGAT-GACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAG
196 AGTAGTGGAGCAGATCAAAGATGGA-AAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
22048347 CCACC
260 CCACC
22048352 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * *
22048417 TAGTGGAGCAGAACAAAGATGACAAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
22048482 CCAAGCCTTGTCTCCATGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAAC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* * * *
22048547 AGAAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGC
196 AGTAGTGGAGCAGATCAAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
22048612 CACC
261 CACC
*
22048616 AAGCCTTGTCTCCCTGAGCAGCAGCTGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22048681 TAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTCAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
22048746 GCAAG
131 CCAAG
22048751 TCTTATCCTC
Statistics
Matches: 1107, Mismatches: 78, Indels: 7
0.93 0.07 0.01
Matches are distributed among these distances:
262 2 0.00
263 727 0.66
264 377 0.34
265 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (264 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCAAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
CACC
Found at i:22048029 original size:395 final size:396
Alignment explanation
Indices: 22047299--22048750 Score: 2415
Period size: 395 Copynumber: 3.7 Consensus size: 396
22047289 GTGAAACACT
* * **
22047299 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCATAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * *
22047364 TAGTGGAGTAGATCGAGGACGGTAAATCTTATCTTTCCAAGATAGTCGGAAGCAAATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCA
* *
22047429 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATATCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* ** *
22047494 AGTAGTGGAGAAGATTGAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG-
196 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
22047558 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
261 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
22047623 GCAGTAGTGGAGAAGATCAAAGACGGCAAATTTTATCTTTCCAAGATAGTGGGAAGCATATTTAA
326 GCAGTAGTGGAGAAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
22047688 GCCACC
391 GCCACC
* *
22047694 AAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
22047759 TAGTGGAGCAGATCAAAGATGGCAAATCTTATATTTCCAAGATAGTGGGAAGCAGATTTAAG-CA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCA
22047823 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* *
22047888 CGTAGTGGAGCAGAACAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
196 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* *
22047953 CACCAAGCCTTGTCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
261 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* ** * *
22048018 GCAATAGTGGAGAAGATTGAAGACAGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
326 GCAGTAGTGGAGAAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
22048083 GCCACC
391 GCCACC
*
22048089 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
22048154 TAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAG-GGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCA
*
22048218 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* * *
22048283 AGTAATGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGC
196 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
22048348 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
261 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * * *
22048413 GCAGTAGTGGAGCAGAACAAAGATGACAAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAA
326 GCAGTAGTGGAGAAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
22048478 GCCACC
391 GCCACC
* *
22048484 AAGCCTTGTCTCCATGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAACAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
*
22048549 AAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCA
*
22048614 CCAAGCCTTGTCTCCCTGAGCAGCAGCTGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
131 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* * *
22048679 AGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTCAAGC
196 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
*
22048744 CAGCAAG
261 CACCAAG
22048751 TCTTATCCTC
Statistics
Matches: 982, Mismatches: 72, Indels: 5
0.93 0.07 0.00
Matches are distributed among these distances:
394 139 0.14
395 697 0.71
396 146 0.15
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (396 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCA
CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGAAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GCCACC
Found at i:22048795 original size:44 final size:45
Alignment explanation
Indices: 22048731--22048832 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 45
22048721 GATAGTGGGA
*
22048731 AGCAGATTCAAGCCAGCAAGTCTTATC-CTCCTGAAGTGGCAGTGG
1 AGCAGATTAAAGCCAGCAAGTCTTATCTC-CCTGAAGTGGCAGTGG
* *
22048776 AGCAGATTAAAGCTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGCCAGCAAGTCTTATCTCCCTGAAGTGGCAGTGG
* *
22048820 AGTAGATTGAAGC
1 AGCAGATTAAAGC
22048833 ACGAATTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
44 37 0.73
45 14 0.27
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (45 bp):
AGCAGATTAAAGCCAGCAAGTCTTATCTCCCTGAAGTGGCAGTGG
Found at i:22048806 original size:132 final size:132
Alignment explanation
Indices: 22047299--22048750 Score: 2388
Period size: 132 Copynumber: 11.0 Consensus size: 132
22047289 GTGAAACACT
* * **
22047299 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCATAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * * *
22047364 TAGTGGAGTAGATCGAGGACGGTAAATCTTATCTTTCCAAGATAGTCGGAAGCAAATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22047429 CC
131 CC
* *
22047431 AAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATATCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* ** * *
22047496 TAGTGGAGAAGATTGAAGATGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG-CA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22047560 CC
131 CC
22047562 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
22047627 TAGTGGAGAAGATCAAAGACGGCAAATTTTATCTTTCCAAGATAGTGGGAAGCATATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22047692 CC
131 CC
* *
22047694 AAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22047759 TAGTGGAGCAGATCAAAGATGGCAAATCTTATATTTCCAAGATAGTGGGAAGCAGATTTAAG-CA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22047823 CC
131 CC
*
22047825 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCCG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22047890 TAGTGGAGCAGAACAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22047955 CC
131 CC
* * *
22047957 AAGCCTTGTCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAA
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* ** * *
22048022 TAGTGGAGAAGATTGAAGACAGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22048087 CC
131 CC
*
22048089 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22048154 TAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAG-GGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22048218 CC
131 CC
*
22048220 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * *
22048285 TAATGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22048350 CC
131 CC
22048352 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * *
22048417 TAGTGGAGCAGAACAAAGATGACAAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22048482 CC
131 CC
* *
22048484 AAGCCTTGTCTCCATGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAACAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22048549 AAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
22048614 CC
131 CC
*
22048616 AAGCCTTGTCTCCCTGAGCAGCAGCTGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
22048681 TAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTCAAGCCA
66 TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
22048746 GC
131 CC
22048748 AAG
1 AAG
22048751 TCTTATCCTC
Statistics
Matches: 1237, Mismatches: 80, Indels: 6
0.93 0.06 0.00
Matches are distributed among these distances:
131 373 0.30
132 864 0.70
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:22049138 original size:19 final size:21
Alignment explanation
Indices: 22049036--22049132 Score: 144
Period size: 21 Copynumber: 4.7 Consensus size: 21
22049026 ATTTTCGAGA
*
22049036 ATATACAATTTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
22049057 AT-T-CAATTTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
22049076 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
22049097 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
22049118 ATATACAATCTTAGA
1 ATATACAATCTTAGA
22049133 AGATATGATT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.25
20 2 0.03
21 52 0.72
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:22049168 original size:21 final size:23
Alignment explanation
Indices: 22049124--22049168 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
22049114 TGATATATAC
*
22049124 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
22049147 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
22049168 A
1 A
22049169 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:22054369 original size:30 final size:30
Alignment explanation
Indices: 22054324--22054445 Score: 174
Period size: 30 Copynumber: 4.1 Consensus size: 30
22054314 CATGGCCGTA
* *
22054324 TGTCTAGCCCGTGTGTCTCACACGACTGTG
1 TGTCCAGCTCGTGTGTCTCACACGACTGTG
22054354 TGTCCAGCTCGTGTGTCTCACAC-AGCTGTG
1 TGTCCAGCTCGTGTGTCTCACACGA-CTGTG
* ** *
22054384 TGTCCAGCTCATGTGTCTCACACGGTTGTA
1 TGTCCAGCTCGTGTGTCTCACACGACTGTG
22054414 TGTCCAGCTCGTGTGTCTCACACGACTGTG
1 TGTCCAGCTCGTGTGTCTCACACGACTGTG
22054444 TG
1 TG
22054446 GGAAGGCCTA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 1 0.01
30 79 0.99
ACGTcount: A:0.14, C:0.29, G:0.26, T:0.31
Consensus pattern (30 bp):
TGTCCAGCTCGTGTGTCTCACACGACTGTG
Found at i:22056064 original size:6 final size:6
Alignment explanation
Indices: 22056053--22056116 Score: 56
Period size: 6 Copynumber: 10.2 Consensus size: 6
22056043 GAAATCTAAG
* * * *
22056053 AAATAA AAATAAA ATAACTAA AAACAA AAACAA AAACAA AAACAA AAATAA
1 AAATAA AAAT-AA A-AA-TAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
22056104 AACTAA AAATAA A
1 AAATAA AAATAA A
22056117 TTTGAAATGA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
6 40 0.78
7 5 0.10
8 5 0.10
9 1 0.02
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (6 bp):
AAATAA
Found at i:22056111 original size:18 final size:19
Alignment explanation
Indices: 22056068--22056112 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
22056058 AAAATAAAAT
22056068 AACTAAAAACAAAAACAAA
1 AACTAAAAACAAAAACAAA
*
22056087 AAC-AAAAACAAAAA-TAA
1 AACTAAAAACAAAAACAAA
22056104 AACTAAAAA
1 AACTAAAAA
22056113 TAAATTTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 16 0.67
19 3 0.12
ACGTcount: A:0.80, C:0.13, G:0.00, T:0.07
Consensus pattern (19 bp):
AACTAAAAACAAAAACAAA
Found at i:22058844 original size:12 final size:12
Alignment explanation
Indices: 22058824--22058858 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
22058814 AGTTACATGG
*
22058824 CCTAACACACGA
1 CCTAGCACACGA
22058836 CCTAGCACACGA
1 CCTAGCACACGA
22058848 CCTAGCACACG
1 CCTAGCACACG
22058859 GACGTCTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.34, C:0.43, G:0.14, T:0.09
Consensus pattern (12 bp):
CCTAGCACACGA
Found at i:22068299 original size:35 final size:35
Alignment explanation
Indices: 22068260--22068336 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
22068250 CCTGCAAAAT
22068260 ACACCAATGCTCATAAA-AGCTAGTCCAACCGAAAC
1 ACACCAATGCTCA-AAAGAGCTAGTCCAACCGAAAC
***
22068295 ACACCAATGCTCAAAAGAGCTAGTCCCTTCGAAAC
1 ACACCAATGCTCAAAAGAGCTAGTCCAACCGAAAC
22068330 ACACCAA
1 ACACCAA
22068337 ACAGAGAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 3 0.08
35 35 0.92
ACGTcount: A:0.42, C:0.32, G:0.12, T:0.14
Consensus pattern (35 bp):
ACACCAATGCTCAAAAGAGCTAGTCCAACCGAAAC
Found at i:22072597 original size:25 final size:24
Alignment explanation
Indices: 22072569--22072615 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
22072559 AATGTAAATG
*
22072569 TAAAAATTAAATTAAAACAAAATTA
1 TAAAAA-TAAAATAAAACAAAATTA
*
22072594 TAAAAATAAAATAAAATAAAAT
1 TAAAAATAAAATAAAACAAAAT
22072616 AATGGCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
TAAAAATAAAATAAAACAAAATTA
Found at i:22072645 original size:31 final size:31
Alignment explanation
Indices: 22072598--22072672 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
22072588 AAATTATAAA
*
22072598 AATA-AAATAAAATAAAATAATGGCTAAATT
1 AATAGAAATAAAGTAAAATAATGGCTAAATT
22072628 AATAGAAATAAAGTAAAATAATGGCTAAATT
1 AATAGAAATAAAGTAAAATAATGGCTAAATT
22072659 AATAGAAATAAAGT
1 AATAGAAATAAAGT
22072673 GTTCCTAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 4 0.09
31 39 0.91
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.25
Consensus pattern (31 bp):
AATAGAAATAAAGTAAAATAATGGCTAAATT
Found at i:22084125 original size:16 final size:15
Alignment explanation
Indices: 22084101--22084130 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
22084091 TGGGTTGAGA
22084101 AAATTATTTAATTAG
1 AAATTATTTAATTAG
22084116 AAATTAATTTAATTA
1 AAATT-ATTTAATTA
22084131 ATTAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AAATTATTTAATTAG
Found at i:22100525 original size:171 final size:172
Alignment explanation
Indices: 22100192--22100525 Score: 442
Period size: 171 Copynumber: 1.9 Consensus size: 172
22100182 TTATATATCA
*
22100192 TAATTTAATATCAAGTACCATTAAGGTAATCTATACATGTATCATCACATTTCATAGCATATTGC
1 TAATTTAATATCAAGTACCATTAAGG-AATCTATACATGTATCATCACATTTCATAGCATATTAC
* ** *
22100257 TTTGATGTTATGAATTGAGAGTCTCAACTAAGGTCTTTAGACCATATAGGTCTATACCATATTTC
65 TTTGATATTATGAATTGAGAGTCTCAACTAAGGTCTTTAGACCATATAAATCCATACCATATTTC
* * *
22100322 ATTCATATCACTATGGCCACTCACATCAAAGTTACATTATTCT
130 ATTCATATCACTACGACCACTCACACCAAAGTTACATTATTCT
* * * * *
22100365 TAATTTCATATCAAGTGCCATTAAGG-CTCTATACATGTATCATCACTTTTCATAGCATATTATT
1 TAATTTAATATCAAGTACCATTAAGGAATCTATACATGTATCATCACATTTCATAGCATATTACT
* * *
22100429 TTGATATTATTAACTT-AG-GTTCTCAGCTAAGGTCTTTAGACCATATAAATCCATACCATGTTT
66 TTGATATTATGAA-TTGAGAG-TCTCAACTAAGGTCTTTAGACCATATAAATCCATACCATATTT
* *
22100492 CATTCATATTC-CTACGACCACTTATACCAAAGTT
129 CATTCATA-TCACTACGACCACTCACACCAAAGTT
22100526 GTAATGACCT
Statistics
Matches: 140, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
170 1 0.01
171 111 0.79
172 4 0.03
173 24 0.17
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (172 bp):
TAATTTAATATCAAGTACCATTAAGGAATCTATACATGTATCATCACATTTCATAGCATATTACT
TTGATATTATGAATTGAGAGTCTCAACTAAGGTCTTTAGACCATATAAATCCATACCATATTTCA
TTCATATCACTACGACCACTCACACCAAAGTTACATTATTCT
Found at i:22100935 original size:24 final size:24
Alignment explanation
Indices: 22100905--22100952 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
22100895 TTTAAAGAAA
22100905 AATAAATATTGTCATCCTTTTTAT
1 AATAAATATTGTCATCCTTTTTAT
* * *
22100929 AATAAATCTTTTCATCTTTTTTAT
1 AATAAATATTGTCATCCTTTTTAT
22100953 TCTTCTCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.54
Consensus pattern (24 bp):
AATAAATATTGTCATCCTTTTTAT
Found at i:22107845 original size:14 final size:15
Alignment explanation
Indices: 22107815--22107847 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
22107805 ACCATTGATA
22107815 TAAAATATAATATTT
1 TAAAATATAATATTT
22107830 TAAAATATAA-ATTT
1 TAAAATATAATATTT
22107844 TAAA
1 TAAA
22107848 TAATGGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAATATAATATTT
Found at i:22108154 original size:21 final size:21
Alignment explanation
Indices: 22108129--22108171 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22108119 ATATACAAAG
22108129 TATCATAAAGATAAATAATAT
1 TATCATAAAGATAAATAATAT
* *
22108150 TATCATAAATATAAATATTAT
1 TATCATAAAGATAAATAATAT
22108171 T
1 T
22108172 TATTTATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (21 bp):
TATCATAAAGATAAATAATAT
Found at i:22108179 original size:26 final size:26
Alignment explanation
Indices: 22108149--22108199 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22108139 ATAAATAATA
22108149 TTATCA-TAAATATAAATATTATTTAT
1 TTATCATTAAA-ATAAATATTATTTAT
22108175 TTATCATTAAAATAAATATTATTTA
1 TTATCATTAAAATAAATATTATTTA
22108200 CCTTAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATCATTAAAATAAATATTATTTAT
Found at i:22123312 original size:35 final size:35
Alignment explanation
Indices: 22123266--22123340 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
22123256 AAATATAAAC
22123266 TAATAGTTTAGTGATGTAATTTACCCACAAACAAA
1 TAATAGTTTAGTGATGTAATTTACCCACAAACAAA
22123301 TAATAGTTTAGTGATGTAATTTACCCACAAACAAA
1 TAATAGTTTAGTGATGTAATTTACCCACAAACAAA
22123336 TAATA
1 TAATA
22123341 TGGAAAGTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (35 bp):
TAATAGTTTAGTGATGTAATTTACCCACAAACAAA
Found at i:22131033 original size:15 final size:15
Alignment explanation
Indices: 22131013--22131043 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22131003 CCAACCTTCA
22131013 AATTTTACCTCAATT
1 AATTTTACCTCAATT
22131028 AATTTTACCTCAATT
1 AATTTTACCTCAATT
22131043 A
1 A
22131044 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:22133303 original size:11 final size:11
Alignment explanation
Indices: 22133287--22133313 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22133277 TAGAAATTAG
22133287 TTTGTGAAACT
1 TTTGTGAAACT
22133298 TTTGTGAAACT
1 TTTGTGAAACT
22133309 TTTGT
1 TTTGT
22133314 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:22134839 original size:93 final size:92
Alignment explanation
Indices: 22134708--22134902 Score: 277
Period size: 93 Copynumber: 2.1 Consensus size: 92
22134698 TTGATTTTAG
* *
22134708 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
22134772 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* * *
22134800 TAAATTCGTATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
22134865 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
22134893 CAAATTCATA
1 TAAATTCATA
22134903 AACTATAATC
Statistics
Matches: 91, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
92 16 0.18
93 70 0.77
94 5 0.05
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:22134960 original size:17 final size:17
Alignment explanation
Indices: 22134935--22134968 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22134925 ATAATTTTAA
*
22134935 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
22134952 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
22134969 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Done.