Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 78 of 216
Found at i:23906072 original size:19 final size:21
Alignment explanation
Indices: 23906038--23906086 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
23906028 ACAATTCTTG
*
23906038 AAACACGAATTTTTTTTTT-A
1 AAACATGAATTTTTTTTTTAA
23906058 AAACATGAA-TTTTTTTTTAA
1 AAACATGAATTTTTTTTTTAA
23906078 AAACATGAA
1 AAACATGAA
23906087 CATTTGTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (21 bp):
AAACATGAATTTTTTTTTTAA
Found at i:23906097 original size:57 final size:58
Alignment explanation
Indices: 23905989--23906111 Score: 153
Period size: 57 Copynumber: 2.1 Consensus size: 58
23905979 TAAGAAAATT
23905989 ATTTTTTTTAAAAAACATGAATATATTTTTAAAAACACGACAATTCTTGAAACAC-GA
1 ATTTTTTTTAAAAAACATGAATATATTTTTAAAAACACGACAATTCTTGAAACACGGA
** * * *
23906046 ATTTTTTTTTTAAAACATGAATTTTTTTTTAAAAACATGA-ACATT-TGTGAAACACGTGA
1 ATTTTTTTTAAAAAACATGAATATATTTTTAAAAACACGACA-ATTCT-TGAAACACG-GA
23906105 ATTTTTT
1 ATTTTTT
23906112 GAAAACATGA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
56 2 0.04
57 46 0.81
59 9 0.16
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (58 bp):
ATTTTTTTTAAAAAACATGAATATATTTTTAAAAACACGACAATTCTTGAAACACGGA
Found at i:23906143 original size:17 final size:16
Alignment explanation
Indices: 23906078--23906144 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 16
23906068 TTTTTTTTAA
*
23906078 AAACATGAACATTTGTG
1 AAACATGAA-ATTTTTG
*
23906095 AAACACGTGAATTTTTTG
1 AAACA--TGAAATTTTTG
23906113 AAAACATGATAATTTTTG
1 -AAACATGA-AATTTTTG
23906131 AAACATGGAAATTT
1 AAACAT-GAAATTT
23906145 CTACAAGACA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
17 19 0.45
18 14 0.33
19 9 0.21
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (16 bp):
AAACATGAAATTTTTG
Found at i:23906813 original size:19 final size:19
Alignment explanation
Indices: 23906785--23906821 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23906775 AACACCATTT
*
23906785 AAATACATTAAATAAAATA
1 AAATACATTAAAAAAAATA
*
23906804 AAATAGATTAAAAAAAAT
1 AAATACATTAAAAAAAAT
23906822 TTACCAAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (19 bp):
AAATACATTAAAAAAAATA
Found at i:23907031 original size:12 final size:12
Alignment explanation
Indices: 23907011--23907053 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
23907001 ACTACTTTTA
23907011 TTCTTTTTTATT
1 TTCTTTTTTATT
23907023 GTT-TTTTTTATT
1 -TTCTTTTTTATT
*
23907035 TTCTTTTTT-CT
1 TTCTTTTTTATT
23907046 TTCTTTTT
1 TTCTTTTT
23907054 CTCTCTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 11 0.39
12 15 0.54
13 2 0.07
ACGTcount: A:0.05, C:0.09, G:0.02, T:0.84
Consensus pattern (12 bp):
TTCTTTTTTATT
Found at i:23907074 original size:27 final size:26
Alignment explanation
Indices: 23907033--23907086 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
23907023 GTTTTTTTTA
* * *
23907033 TTTTCTTTTTTCTTTCTTTTTCTCTCT
1 TTTTCTTTCTCCTTTCTTCTTCT-TCT
23907060 TTTTCTTTCTCCTTTCTTCTTCTTCT
1 TTTTCTTTCTCCTTTCTTCTTCTTCT
23907086 T
1 T
23907087 CCCTTTACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (26 bp):
TTTTCTTTCTCCTTTCTTCTTCTTCT
Found at i:23907080 original size:20 final size:20
Alignment explanation
Indices: 23907039--23907105 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
23907029 TTTATTTTCT
*
23907039 TTTTTCTTTCT-TTTTCTCTC
1 TTTTTCTTTCTCCTTTCT-TC
23907059 TTTTTCTTTCTCCTTTCTTC
1 TTTTTCTTTCTCCTTTCTTC
* *
23907079 TTCTTC-TTC-CC-TT-TAC
1 TTTTTCTTTCTCCTTTCTTC
23907095 TTTTTCTTTCT
1 TTTTTCTTTCT
23907106 TTTGAGTTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
16 7 0.17
17 5 0.12
18 2 0.05
19 3 0.08
20 18 0.45
21 5 0.12
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTCTTTCTCCTTTCTTC
Found at i:23907604 original size:30 final size:30
Alignment explanation
Indices: 23907570--23907639 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
23907560 AATATGGGGC
*
23907570 CAAAATGTAATTTCT-AGAAAGTTAAATGGT
1 CAAAATGTAATTT-TGAGAAAGTTAAAGGGT
* * *
23907600 CAAAATGAAATTTTGAGAAATTTAAGGGGT
1 CAAAATGTAATTTTGAGAAAGTTAAAGGGT
*
23907630 TAAAATGTAA
1 CAAAATGTAA
23907640 ATATAGGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 1 0.03
30 32 0.97
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (30 bp):
CAAAATGTAATTTTGAGAAAGTTAAAGGGT
Found at i:23907713 original size:8 final size:8
Alignment explanation
Indices: 23907700--23907726 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
23907690 CTGAATGTAA
23907700 TTTATATT
1 TTTATATT
23907708 TTTATATT
1 TTTATATT
23907716 TTTATATT
1 TTTATATT
23907724 TTT
1 TTT
23907727 TTCACAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTATATT
Found at i:23914265 original size:30 final size:30
Alignment explanation
Indices: 23914229--23914285 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
23914219 TATTTCTATT
23914229 AAGAAGAGAGAATTTTCATTTTCACCCTAC
1 AAGAAGAGAGAATTTTCATTTTCACCCTAC
**
23914259 AAGAAGAGAGAATTTTTGTTTTCACCC
1 AAGAAGAGAGAATTTTCATTTTCACCC
23914286 CAAAAGGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (30 bp):
AAGAAGAGAGAATTTTCATTTTCACCCTAC
Found at i:23914297 original size:30 final size:30
Alignment explanation
Indices: 23914229--23914306 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
23914219 TATTTCTATT
* * *
23914229 AAGAAGAGAGAATTTTCATTTTCACCCTAC
1 AAGAAGAGAGAATTTTTATTTTCACCCCAA
*
23914259 AAGAAGAGAGAATTTTTGTTTTCACCCCAA
1 AAGAAGAGAGAATTTTTATTTTCACCCCAA
* *
23914289 AAGGAGAGAAAACTTTTT
1 AAGAAGAGAGAA-TTTTT
23914307 CTAGTTCTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 36 0.88
31 5 0.12
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (30 bp):
AAGAAGAGAGAATTTTTATTTTCACCCCAA
Found at i:23918609 original size:26 final size:25
Alignment explanation
Indices: 23918576--23918628 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
23918566 GAATTTGAGT
* *
23918576 ATTTAGGG-TTAAATTGTGAAAATAA
1 ATTTAGGGACTAAAGTGTG-AAATAA
23918601 ATTTGAGGGACTAAAGTGTGAAATAA
1 ATTT-AGGGACTAAAGTGTGAAATAA
23918627 AT
1 AT
23918629 GCAATGTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
26 12 0.50
27 8 0.33
ACGTcount: A:0.43, C:0.02, G:0.23, T:0.32
Consensus pattern (25 bp):
ATTTAGGGACTAAAGTGTGAAATAA
Found at i:23919691 original size:41 final size:41
Alignment explanation
Indices: 23919644--23919844 Score: 242
Period size: 41 Copynumber: 4.9 Consensus size: 41
23919634 GTGAAATTAT
23919644 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
*
23919685 TCAGACTATACGTCTAGCAGGCTAAATGCCGGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
* * * *
23919726 TCGGACTATACGTCTAGCAGGCTAAGTGTCGGTGAACTAAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
* * * * *
23919767 TCAGGCTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
* * * * * *
23919808 TTAAACTATAAGCCTATCAGG-TGAAGTGCCAGTGAAT
1 TCAGACTATACGTCTAGCAGGCT-AAGTGCCGGTGAAT
23919845 CTATTTAAAT
Statistics
Matches: 139, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
40 1 0.01
41 138 0.99
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (41 bp):
TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
Found at i:23926742 original size:13 final size:13
Alignment explanation
Indices: 23926724--23926748 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23926714 CATTTCTAGG
23926724 TCATTTTCATTTT
1 TCATTTTCATTTT
23926737 TCATTTTCATTT
1 TCATTTTCATTT
23926749 GGAAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (13 bp):
TCATTTTCATTTT
Found at i:23937728 original size:29 final size:30
Alignment explanation
Indices: 23937678--23937738 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
23937668 AAGTTTTCGT
* *
23937678 TTTGGTCACTTAACTAAACAAA-TTTACAA
1 TTTGGTCACTAAAATAAACAAAGTTTACAA
** *
23937707 TTTGGTCACTAAAATATTCAAAGTTTTCAA
1 TTTGGTCACTAAAATAAACAAAGTTTACAA
23937737 TT
1 TT
23937739 AAGCCGTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.39
Consensus pattern (30 bp):
TTTGGTCACTAAAATAAACAAAGTTTACAA
Found at i:23938211 original size:14 final size:14
Alignment explanation
Indices: 23938188--23938219 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
23938178 GACGATTTTC
*
23938188 AAAAGTAAAAGAAA
1 AAAAGAAAAAGAAA
23938202 AAAAGAAAAAGAAA
1 AAAAGAAAAAGAAA
23938216 AAAA
1 AAAA
23938220 AACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAAGAAA
Found at i:23955826 original size:12 final size:12
Alignment explanation
Indices: 23955806--23955838 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
23955796 AAACCTAATG
23955806 ATTGTAAAGCTA
1 ATTGTAAAGCTA
*
23955818 ATTGAAAAGCTA
1 ATTGTAAAGCTA
23955830 ATTGTAAAG
1 ATTGTAAAG
23955839 GTTAGTCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (12 bp):
ATTGTAAAGCTA
Found at i:23960352 original size:6 final size:6
Alignment explanation
Indices: 23960343--23960372 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
23960333 GTGTGACTGT
*
23960343 GAATGC GAATGA GAATGC GAATGC GAATGC
1 GAATGC GAATGC GAATGC GAATGC GAATGC
23960373 TCAAGGGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.17
Consensus pattern (6 bp):
GAATGC
Found at i:23968979 original size:39 final size:40
Alignment explanation
Indices: 23968934--23969158 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
23968924 GCTCATCGTT
* * * *
23968934 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
23968974 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
23969013 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
23969053 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
23969093 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
23969134 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
23969159 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23969167 original size:41 final size:41
Alignment explanation
Indices: 23969090--23969167 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23969080 CTTGTATCTC
* * *
23969090 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23969131 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23969168 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23976837 original size:39 final size:40
Alignment explanation
Indices: 23976792--23977015 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
23976782 GCTCCTCGTT
* * * *
23976792 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
23976832 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
23976871 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
23976911 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
23976950 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
23976991 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
23977016 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 66 0.42
40 78 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23976895 original size:79 final size:78
Alignment explanation
Indices: 23976792--23977016 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
23976782 GCTCCTCGTT
* * *
23976792 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
23976857 TTTAATAACTCGCA
66 CTT-ATAACTCGCA
* * * *
23976871 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
23976935 AACTTGTATCTCGCA
65 -ACTTATAACTCGCA
* * * * * *
23976950 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
23977014 GAC
64 GAC
23977017 AGCATTCAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 91 0.75
80 27 0.22
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
CTTATAACTCGCA
Found at i:23977024 original size:41 final size:41
Alignment explanation
Indices: 23976947--23977024 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23976937 CTTGTATCTC
* * *
23976947 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23976988 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23977025 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23981627 original size:34 final size:35
Alignment explanation
Indices: 23981583--23981649 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 35
23981573 CAGTAAAATA
*
23981583 TTTTCCGTAAATTGATTT-CT-GTAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTAG-AAAATATTTTAC
*
23981617 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTT
23981650 CTGCTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 16 0.55
35 12 0.41
36 1 0.03
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.49
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:23982123 original size:14 final size:14
Alignment explanation
Indices: 23982106--23982133 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23982096 GGAAATGATT
23982106 TTCCGGAAAATCAA
1 TTCCGGAAAATCAA
23982120 TTCCGGAAAATCAA
1 TTCCGGAAAATCAA
23982134 ACAGACCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.21
Consensus pattern (14 bp):
TTCCGGAAAATCAA
Found at i:23990154 original size:10 final size:11
Alignment explanation
Indices: 23990130--23990167 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
23990120 ATTTTTTAAA
23990130 TTTTAAAATAT
1 TTTTAAAATAT
23990141 TTTTAAAATAT
1 TTTTAAAATAT
*
23990152 TTTTAAAATTT
1 TTTTAAAATAT
23990163 TTTTA
1 TTTTA
23990168 TTTTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:23998229 original size:39 final size:39
Alignment explanation
Indices: 23998182--23998256 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
23998172 TAATGACCTC
23998182 GTCATGTGTGTGTTACCTTCATATGATACCCTTAATGAG
1 GTCATGTGTGTGTTACCTTCATATGATACCCTTAATGAG
23998221 GTCATGTGTGTGTTACCTTCATATGATACCCTTAAT
1 GTCATGTGTGTGTTACCTTCATATGATACCCTTAAT
23998257 TCTTTTAAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (39 bp):
GTCATGTGTGTGTTACCTTCATATGATACCCTTAATGAG
Found at i:24000684 original size:28 final size:30
Alignment explanation
Indices: 24000630--24000685 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 30
24000620 ATTTTTGCAT
* *
24000630 TGATGAATCTATGTGATTTTAGATGTTAAA
1 TGATGAATCTATGAGATATTAGATGTTAAA
*
24000660 TGATGAAT-T-TGAGATATTAGTTGTTA
1 TGATGAATCTATGAGATATTAGATGTTA
24000686 TTTAAAAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 14 0.61
29 1 0.04
30 8 0.35
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (30 bp):
TGATGAATCTATGAGATATTAGATGTTAAA
Found at i:24001276 original size:38 final size:37
Alignment explanation
Indices: 24001185--24001283 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
24001175 AGAAATGCAG
* * *
24001185 TGATTTTGGGCTATGTGCCTTGCAGGCTTTGTATCGA
1 TGATTTTGGGCTATGTGCATAGCAGGCTTTGTACCGA
* * * *
24001222 TGATTTTGGGATATGTGCATAGTAGGTTTTGTGCCGA
1 TGATTTTGGGCTATGTGCATAGCAGGCTTTGTACCGA
* *
24001259 TGTTATTTGGGCTATGTGCTTAGCA
1 TGAT-TTTGGGCTATGTGCATAGCA
24001284 AAATTTGTGC
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
37 33 0.66
38 17 0.34
ACGTcount: A:0.16, C:0.12, G:0.30, T:0.41
Consensus pattern (37 bp):
TGATTTTGGGCTATGTGCATAGCAGGCTTTGTACCGA
Found at i:24001341 original size:75 final size:76
Alignment explanation
Indices: 24001262--24001416 Score: 179
Period size: 76 Copynumber: 2.1 Consensus size: 76
24001252 GTGCCGATGT
* * ** * * *
24001262 TATTTGGGCTAT-GTGCTTAGCAAAATTTGTGCTTGTGAT-TTCGGGCTGTGTGCCTAGCAGGGT
1 TATTTGGGCT-TCGTGCCTAGCAAAATTTATGCCAGTGATATTCGAGCTCTGTGCCTAGCAGGCT
*
24001325 TTGTGTTGGTCA
65 TTGTGCTGGTCA
** *
24001337 TATTTGGGCTTCGTGCCTAGCAAGCTTTATGCCAGTGATATTCGAGCTCTGTGCCTAGTAGGCTT
1 TATTTGGGCTTCGTGCCTAGCAAAATTTATGCCAGTGATATTCGAGCTCTGTGCCTAGCAGGCTT
*
24001402 TGTGCTGGTGA
66 TGTGCTGGTCA
24001413 TATT
1 TATT
24001417 CGAGCTCTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
74 1 0.02
75 31 0.47
76 34 0.52
ACGTcount: A:0.15, C:0.16, G:0.30, T:0.39
Consensus pattern (76 bp):
TATTTGGGCTTCGTGCCTAGCAAAATTTATGCCAGTGATATTCGAGCTCTGTGCCTAGCAGGCTT
TGTGCTGGTCA
Found at i:24001391 original size:38 final size:38
Alignment explanation
Indices: 24001349--24001435 Score: 111
Period size: 38 Copynumber: 2.3 Consensus size: 38
24001339 TTTGGGCTTC
24001349 GTGCCTAGCAAGCTTTATGCCAGTGATATTCGAGCTCT
1 GTGCCTAGCAAGCTTTATGCCAGTGATATTCGAGCTCT
* * * **
24001387 GTGCCTAGTAGGCTTTGTGCTGGTGATATTCGAGCTCT
1 GTGCCTAGCAAGCTTTATGCCAGTGATATTCGAGCTCT
* *
24001425 ATGGCTAGCAA
1 GTGCCTAGCAA
24001436 CCTTCGTGCA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.32
Consensus pattern (38 bp):
GTGCCTAGCAAGCTTTATGCCAGTGATATTCGAGCTCT
Found at i:24001433 original size:76 final size:75
Alignment explanation
Indices: 24001296--24001435 Score: 165
Period size: 76 Copynumber: 1.9 Consensus size: 75
24001286 ATTTGTGCTT
* * * * * * *
24001296 GTGATTTCGGGCTGTGTGCCTAGCAGGGTTTGTGTTGGTCATATTTGGGCTTCGTGCCTAGCAAG
1 GTGATTTCGAGCTCTGTGCCTAGCAGGCTTTGTGCTGGTCATATTCGAGCTTCATGCCTAGCAAG
24001361 CTTTATGCCA
66 CTTTATGCCA
* * *
24001371 GTGATATTCGAGCTCTGTGCCTAGTAGGCTTTGTGCTGGTGATATTCGAGC-TCTATGGCTAGCA
1 GTGAT-TTCGAGCTCTGTGCCTAGCAGGCTTTGTGCTGGTCATATTCGAGCTTC-ATGCCTAGCA
24001435 A
64 A
24001436 CCTTCGTGCA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
75 7 0.13
76 46 0.87
ACGTcount: A:0.16, C:0.19, G:0.31, T:0.35
Consensus pattern (75 bp):
GTGATTTCGAGCTCTGTGCCTAGCAGGCTTTGTGCTGGTCATATTCGAGCTTCATGCCTAGCAAG
CTTTATGCCA
Found at i:24001527 original size:41 final size:41
Alignment explanation
Indices: 24001437--24001543 Score: 106
Period size: 41 Copynumber: 2.6 Consensus size: 41
24001427 GGCTAGCAAC
* * * * *
24001437 CTTCGTGCAAGTGTATTATATCAGGCTTTGTGCTTAGTTGG
1 CTTCGTGCCAGTGTATTATATCAGGCTTCGAGCCTAGTAGG
* * * * *
24001478 CTTTGTGCCGGTGTGTTATATCAGGCTTCGAGCCTGGTAGT
1 CTTCGTGCCAGTGTATTATATCAGGCTTCGAGCCTAGTAGG
* *
24001519 CTTCGTGCCAATGTATTGTATCAGG
1 CTTCGTGCCAGTGTATTATATCAGG
24001544 TAAGTTGTAC
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.16, C:0.18, G:0.28, T:0.38
Consensus pattern (41 bp):
CTTCGTGCCAGTGTATTATATCAGGCTTCGAGCCTAGTAGG
Found at i:24008687 original size:41 final size:41
Alignment explanation
Indices: 24008642--24008730 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 41
24008632 GATATTAAAC
* * * * *
24008642 CAAGCTCTATGCCTAGCAGGCTTTGTGCCTGTGACTTATAT
1 CAAGCTCTATGCCAAGAAAGCTTCGTGCCGGTGACTTATAT
* *
24008683 CAAGCTCTGTGCCAAGAAAGCTTCGTGCCGGTGATTTATAT
1 CAAGCTCTATGCCAAGAAAGCTTCGTGCCGGTGACTTATAT
*
24008724 CAGGCTC
1 CAAGCTC
24008731 AGTACCTAAC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (41 bp):
CAAGCTCTATGCCAAGAAAGCTTCGTGCCGGTGACTTATAT
Found at i:24008747 original size:41 final size:41
Alignment explanation
Indices: 24008653--24008764 Score: 109
Period size: 41 Copynumber: 2.7 Consensus size: 41
24008643 AAGCTCTATG
* * * * * *
24008653 CCTAGCAGGCTTTGTGCCTGTGACTTATATCAAGCTCTGTG
1 CCTAACAGGCTTCGTGCCAGTGATTTATATCAAGCTCAGTA
* * * *
24008694 CC-AAGAAAGCTTCGTGCCGGTGATTTATATCAGGCTCAGTA
1 CCTAA-CAGGCTTCGTGCCAGTGATTTATATCAAGCTCAGTA
*
24008735 CCTAACAGGCTTCGTTCCAGTGATTTATAT
1 CCTAACAGGCTTCGTGCCAGTGATTTATAT
24008765 TAGAATCTGT
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
40 1 0.02
41 53 0.95
42 2 0.04
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.32
Consensus pattern (41 bp):
CCTAACAGGCTTCGTGCCAGTGATTTATATCAAGCTCAGTA
Found at i:24014611 original size:41 final size:41
Alignment explanation
Indices: 24014553--24014647 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 41
24014543 GAGATAATAA
* * **
24014553 ATCAGGCTCTGTACCTAGTAGGCTTCGTGCCGCTGATTTAT
1 ATCAGGCTCTGTACCTAGCAAGCTTCGTGCCAATGATTTAT
*
24014594 ATCAGGCTCTGTGCCTAGCAAGCTTCGTGCCAATGATTTAT
1 ATCAGGCTCTGTACCTAGCAAGCTTCGTGCCAATGATTTAT
*
24014635 ATCAGGCTTTGTA
1 ATCAGGCTCTGTA
24014648 GAAAGCTTGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (41 bp):
ATCAGGCTCTGTACCTAGCAAGCTTCGTGCCAATGATTTAT
Found at i:24014668 original size:37 final size:40
Alignment explanation
Indices: 24014553--24014673 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 40
24014543 GAGATAATAA
* * * **
24014553 ATCAGGCTCTGTACCTAGTAGGCTTCGTGCCGCTGATTTAT
1 ATCAGGCTCTGT-GCTAGAAAGCTTCGTGCCAATGATTTAT
*
24014594 ATCAGGCTCTGTGCCTAGCAAGCTTCGTGCCAATGATTTAT
1 ATCAGGCTCTGTG-CTAGAAAGCTTCGTGCCAATGATTTAT
* * *
24014635 ATCAGGCT-T-TG-TAGAAAGCTTGGTGTCAGTGATTTAT
1 ATCAGGCTCTGTGCTAGAAAGCTTCGTGCCAATGATTTAT
24014672 AT
1 AT
24014674 TAGCAAGCTT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
37 24 0.34
39 2 0.03
40 1 0.01
41 43 0.61
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (40 bp):
ATCAGGCTCTGTGCTAGAAAGCTTCGTGCCAATGATTTAT
Found at i:24024020 original size:29 final size:29
Alignment explanation
Indices: 24023987--24024077 Score: 77
Period size: 29 Copynumber: 3.3 Consensus size: 29
24023977 GAAACTATTG
*
24023987 AATTATCTTTTCTTTATCAATGTTGTTAA
1 AATTATCTTCTCTTTATCAATGTTGTTAA
* * * *
24024016 AATTATCATGTGTTTGA--AACTATTG----
1 AATTATCTTCTCTTT-ATCAA-TGTTGTTAA
24024041 AATTATCTTCTCTTTATCAATGTTGTTAA
1 AATTATCTTCTCTTTATCAATGTTGTTAA
24024070 AATTATCT
1 AATTATCT
24024078 CCTTATATTA
Statistics
Matches: 46, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
24 1 0.02
25 16 0.35
26 2 0.04
28 2 0.04
29 24 0.52
30 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (29 bp):
AATTATCTTCTCTTTATCAATGTTGTTAA
Found at i:24024031 original size:54 final size:54
Alignment explanation
Indices: 24023967--24024076 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
24023957 CAACACTTTC
*
24023967 TCATGTGTTTGAAACTATTGAATTATCTTTTCTTTATCAATGTTGTTAAAATTA
1 TCATGTGTTTGAAACTATTGAATTATCTTCTCTTTATCAATGTTGTTAAAATTA
24024021 TCATGTGTTTGAAACTATTGAATTATCTTCTCTTTATCAATGTTGTTAAAATTA
1 TCATGTGTTTGAAACTATTGAATTATCTTCTCTTTATCAATGTTGTTAAAATTA
24024075 TC
1 TC
24024077 TCCTTATATT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (54 bp):
TCATGTGTTTGAAACTATTGAATTATCTTCTCTTTATCAATGTTGTTAAAATTA
Found at i:24051499 original size:24 final size:24
Alignment explanation
Indices: 24051455--24051507 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
24051445 TTTTCGATTT
*
24051455 ATTTCAAACTTTCATATATATATC
1 ATTTCAAACTTTCATATATATATA
**
24051479 ATTTCAAACTTATTTTA-ATATATA
1 ATTTCAAACTT-TCATATATATATA
24051503 ATTTC
1 ATTTC
24051508 CCTTCTTCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (24 bp):
ATTTCAAACTTTCATATATATATA
Found at i:24056312 original size:40 final size:41
Alignment explanation
Indices: 24056240--24056345 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
24056230 CCAATCTCAA
* * * *
24056240 AAAAAAAAAGAAGAAGAAGAAGCAAAAGCAAAATC-AAGATC
1 AAAATAAAA-AAGAAGAAAAAGAAAAAGCAAAATCAAAAATC
*
24056281 AAAATAAAAAAGAAGAAAAAGAAAAATCAAAATCAAAAATC
1 AAAATAAAAAAGAAGAAAAAGAAAAAGCAAAATCAAAAATC
*
24056322 AAAAT-AAAATGAAAGAAAAAGAAA
1 AAAATAAAAAAG-AAGAAAAAGAAA
24056346 GACGAAAAGA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 27 0.47
41 30 0.53
ACGTcount: A:0.74, C:0.07, G:0.12, T:0.08
Consensus pattern (41 bp):
AAAATAAAAAAGAAGAAAAAGAAAAAGCAAAATCAAAAATC
Found at i:24056318 original size:13 final size:12
Alignment explanation
Indices: 24056297--24056330 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
24056287 AAAAAGAAGA
*
24056297 AAAAGAAAAATC
1 AAAATAAAAATC
24056309 AAAATCAAAAATC
1 AAAAT-AAAAATC
24056322 AAAATAAAA
1 AAAATAAAA
24056331 TGAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.76, C:0.09, G:0.03, T:0.12
Consensus pattern (12 bp):
AAAATAAAAATC
Found at i:24056382 original size:62 final size:61
Alignment explanation
Indices: 24056288--24056403 Score: 137
Period size: 62 Copynumber: 1.9 Consensus size: 61
24056278 ATCAAAATAA
*
24056288 AAAAGAAGAAAAAGAAAAATCAAAATCAAAAATCA-AAATAAAATGAAAGAAAAAGAAAGACG
1 AAAAGAAGAAAAAGAAAAATCAAAATCAAAAAT-ATAAAAAAAATGAAA-AAAAAGAAAGACG
* * * * *
24056350 AAAAGAAGAAAAAAGGAAAATCTAGAT-GAAAATATAAAAAAAATGACAAAAAAG
1 AAAAGAAG-AAAAAGAAAAATCAAAATCAAAAATATAAAAAAAATGAAAAAAAAG
24056404 GAAAAAAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
61 7 0.15
62 24 0.52
63 15 0.33
ACGTcount: A:0.72, C:0.05, G:0.14, T:0.09
Consensus pattern (61 bp):
AAAAGAAGAAAAAGAAAAATCAAAATCAAAAATATAAAAAAAATGAAAAAAAAGAAAGACG
Found at i:24057712 original size:25 final size:25
Alignment explanation
Indices: 24057684--24057734 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
24057674 TATTTGTGAT
24057684 AATTTATTCATTTTGAGTTATGCCC
1 AATTTATTCATTTTGAGTTATGCCC
24057709 AATTTATTCATTTTGAGTTATGCCC
1 AATTTATTCATTTTGAGTTATGCCC
24057734 A
1 A
24057735 GAACCAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (25 bp):
AATTTATTCATTTTGAGTTATGCCC
Found at i:24058623 original size:44 final size:44
Alignment explanation
Indices: 24058570--24058852 Score: 221
Period size: 44 Copynumber: 6.2 Consensus size: 44
24058560 TCTCTAAGCA
* * * *
24058570 ACAGTGGAGCAGATCGAAGCCAGAAATCTTATCTCCTTGAGATT
1 ACAGCGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATT
* * * *
24058614 ACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTAAGATT
1 ACAGCGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATT
* * ** * * *
24058658 ACAGTGGAGCGGATT-AAAATA-AAGGAACTTATCTCTCT-AAAGTT
1 ACAGCGGAGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TT
* * **
24058702 ACAGTAGAGTAGATTGCATCAGATTGAAACTAGAAATCTTATCTCTTTGAGATT
1 AC---AGCG--GA--G---CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATT
*
24058756 ACAGCGAAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATT
1 ACAGCGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATT
* *
24058800 ACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 ACAGCGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATT
*
24058844 ACAGTGGAG
1 ACAGCGGAG
24058853 TGGATTAAAA
Statistics
Matches: 190, Mismatches: 33, Indels: 32
0.75 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 6 0.03
44 143 0.75
47 4 0.02
49 3 0.02
51 4 0.02
54 20 0.11
55 7 0.04
56 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (44 bp):
ACAGCGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATT
Found at i:24059058 original size:50 final size:50
Alignment explanation
Indices: 24059004--24059167 Score: 177
Period size: 50 Copynumber: 3.3 Consensus size: 50
24058994 CCACATCGGT
* * * *
24059004 GAATCTTGCTTCCCCAACATTGCGGTTAAAAAGATTAAAGCTATAACAAC
1 GAATCTTACCTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAAC
* * ** * * * *
24059054 GAATCTTACCT-CTCAAGCAGTGCAGTGGAACAGATTAAAGCCACAACGAT
1 GAATCTTACCTCCCCAA-CATTGCAGTTAAAAAGATTAAAGCTACAACAAC
** *
24059104 GAATCTTACCTCCCTGACATTGCAGTTAAAAAGATTAAAGCTACAACAGC
1 GAATCTTACCTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAAC
24059154 GAATCTTACCTCCC
1 GAATCTTACCTCCC
24059168 AGGCGGTGCA
Statistics
Matches: 89, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
49 4 0.04
50 83 0.93
51 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (50 bp):
GAATCTTACCTCCCCAACATTGCAGTTAAAAAGATTAAAGCTACAACAAC
Found at i:24059132 original size:100 final size:99
Alignment explanation
Indices: 24058977--24059702 Score: 687
Period size: 100 Copynumber: 7.2 Consensus size: 99
24058967 CAAACGATGT
* * * * * *
24058977 AGTGGAACAGATTAAATCCACATCGGTGAATCTTGCTTCCCCAACATTGCGGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGATGAATCTTGCTT-CCCGACATTGCAGTTAAAAGGATTAA
* * * *
24059042 AGCTATAACAACGAATCTTACCTCTCAAGCAGTGC
65 AGCTACAACAGCGAATCTTACCTCCCAGGCAGTGC
* * *
24059077 AGTGGAACAGATTAAAGCCACAACGATGAATCTTACCTCCCTGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGATGAATCTTGCTTCCC-GACATTGCAGTTAAAAGGATTAA
*
24059142 AGCTACAACAGCGAATCTTACCTCCCAGGCGGTGC
65 AGCTACAACAGCGAATCTTACCTCCCAGGCAGTGC
* * *
24059177 AGTGGAACAGATTAAACCCATAAC-AGTGAATCTTG-TCTCCCTGACATTGCAGTTGAAAA-GAC
1 AGTGGAACAGATTAAAGCCACAACGA-TGAATCTTGCT-TCCC-GACATTGCAGTT-AAAAGGAT
* * * * * * * *
24059239 TAAAGCCACACCGGCGAGTGTTACTTCCCTGGCAATGC
62 TAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGC
* * * *
24059277 AGTGAAACAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCAACATTGCAGTTAAAAGGATTAA
1 AGTGGAACAGATTAAAGCCACAACGATGAATCTTGC-TTCCCGACATTGCAGTTAAAAGGATTAA
* * * ** * *
24059342 AG-TCATAAC-GACGAAACTCACTCTCTTAGCCAGTGT
65 AGCT-ACAACAG-CGAATCTTAC-CTCCCAGGCAGTGC
* * * * * * *
24059378 AATAGAGCAGATTAAAGCCACATCGGTGAATCTTACTTTCCCGACATTGCAGCTAAAAGGATTAA
1 AGTGGAACAGATTAAAGCCACAACGATGAATCTTGC-TTCCCGACATTGCAGTTAAAAGGATTAA
* *
24059443 AGCTACAACAGCGAATCTTACTTCCCAGGTAGTGC
65 AGCTACAACAGCGAATCTTACCTCCCAGGCAGTGC
* * *
24059478 AGTGGAACAGATTAAAGCCACAAC-AGTAAATCTTGCTTTCTCGACATTGCAGTTAAAAGGATTG
1 AGTGGAACAGATTAAAGCCACAACGA-TGAATCTTGC-TTCCCGACATTGCAGTTAAAAGGATTA
* * * *
24059542 AAG-TCACAAC-GATGAATCTCACTCTCTCAGCCAGTGC
64 AAGCT-ACAACAG-CGAATCTTAC-CTCCCAGGCAGTGC
* * * *
24059579 AGTAGAGCAGATTAAAGCCACATC-AGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTA
1 AGTGGAACAGATTAAAGCCACAACGA-TGAATCTTGC-TTCCCGACATTGCAGTTAAAAGGATTA
* *
24059643 AAGCTACAACAGCGAATCTTACTTCCTAGGCAGTGC
64 AAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGC
* *
24059679 AGTGGAACAGATTGAAGCTACAAC
1 AGTGGAACAGATTAAAGCCACAAC
24059703 AGCAAATCTC
Statistics
Matches: 508, Mismatches: 99, Indels: 38
0.79 0.15 0.06
Matches are distributed among these distances:
99 11 0.02
100 324 0.64
101 168 0.33
102 5 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (99 bp):
AGTGGAACAGATTAAAGCCACAACGATGAATCTTGCTTCCCGACATTGCAGTTAAAAGGATTAAA
GCTACAACAGCGAATCTTACCTCCCAGGCAGTGC
Found at i:24059178 original size:50 final size:50
Alignment explanation
Indices: 24059028--24059711 Score: 256
Period size: 50 Copynumber: 13.6 Consensus size: 50
24059018 CAACATTGCG
* * * *
24059028 GTTAAAAAGATTAAAGCTATAACAACGAATCTTACCTCTCAAGCAGTGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGCA
** * * * * * *
24059078 GTGGAACAGATTAAAGCCACAAC-GATGAATCTTACCTCCCTGACATTGCA
1 GTTAAAAAGATTAAAGCTACAACAG-CGAATCTTACCTCCCAGGCAGTGCA
*
24059128 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCGGTGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGCA
** * * * * * ** * * *
24059178 GTGGAACAGATTAAACCCATAACAGTGAATCTTGTCTCCCTGACATTGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGCA
* * * * * * * * * *
24059228 GTTGAAAAGACTAAAGCCACACCGGCGAGTGTTACTTCCCTGGCAATGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGCA
* * * * ** * * * *
24059278 GTGAAACAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCA-ACATTGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC-CTCCCAGGCAGTGCA
* * * * ** * *
24059328 GTTAAAAGGATTAAAG-TCATAAC-GACGAAACTCACTCTCTTAGCCAGTGTA
1 GTTAAAAAGATTAAAGCT-ACAACAG-CGAATCTTAC-CTCCCAGGCAGTGCA
* ** * * * * * * *
24059379 -ATAGAGCAGATTAAAGCCACATCGGTGAATCTTACTTTCCC-GACATTGCA
1 GTTA-AAAAGATTAAAGCTACAACAGCGAATCTTAC-CTCCCAGGCAGTGCA
* * * *
24059429 GCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGTAGTGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGCA
** * * ** * * * * *
24059479 GTGGAACAGATTAAAGCCACAACAGTAAATCTTGCTTTCTC-GACATTGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC-CTCCCAGGCAGTGCA
* * * * * *
24059529 GTTAAAAGGATTGAAG-TCACAAC-GATGAATCTCACTCTCTCAGCCAGTGCA
1 GTTAAAAAGATTAAAGCT-ACAACAG-CGAATCTTAC-CTCCCAGGCAGTGCA
** * * * * * * *
24059580 G-TAGAGCAGATTAAAGCCACATCAGTGAATCTTGCTTTCCC-GACATTGCA
1 GTTA-AAAAGATTAAAGCTACAACAGCGAATCTTAC-CTCCCAGGCAGTGCA
* * * *
24059630 GCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCTAGGCAGTGCA
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGCA
** * * *
24059680 GTGGAACAGATTGAAGCTACAACAGCAAATCT
1 GTTAAAAAGATTAAAGCTACAACAGCGAATCT
24059712 CACTTCCCCA
Statistics
Matches: 455, Mismatches: 159, Indels: 40
0.70 0.24 0.06
Matches are distributed among these distances:
49 11 0.02
50 369 0.81
51 73 0.16
52 2 0.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (50 bp):
GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCAGTGCA
Found at i:24059481 original size:201 final size:201
Alignment explanation
Indices: 24058984--24059734 Score: 868
Period size: 201 Copynumber: 3.7 Consensus size: 201
24058974 TGTAGTGGAA
* * * * * * * *
24058984 CAGATTAAATCCACATCGGTGAATCTTGCTTCCCCAACATTGCGGTTAAAAAGATTAAAGCTATA
1 CAGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACA
* * * * *
24059049 ACAACGAATCTTACCTCTCAAGCAGTGCAGTGGAACAGATTAAAGCCACAAC-GATGAATCTTAC
66 ACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAG-TAAATCTTAC
* * * * * * *
24059113 -CTCCCTGACATTGCAGTTAAAAAGATTAAAG-CTACAAC-AGCGAATCTTAC-CTCCCAGGCGG
130 TTTCCC-AACATTGCAGTTAAAAGGATTAAAGTC-ACAACGA-CGAATCTCACTCTCTCAGCCAG
* *
24059174 TGCAGTGGAA
192 TGCAGTAGAG
* * * * * * *
24059184 CAGATTAAACCCATAACAGTGAATCTTG-TCTCCCTGACATTGCAGTTGAAAA-GACTAAAGCCA
1 CAGATTAAAGCCACATCAGTGAATCTTGCTTTCCC-GACATTGCAGCT-AAAAGGATTAAAGCTA
* * * * * * * * *
24059247 CACCGGCGAGTGTTACTTCCCTGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTAAATCTTG
64 CAACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTAAATCTTA
* * *
24059312 CTTTCCCAACATTGCAGTTAAAAGGATTAAAGTCATAACGACGAAACTCACTCTCTTAGCCAGTG
129 CTTTCCCAACATTGCAGTTAAAAGGATTAAAGTCACAACGACGAATCTCACTCTCTCAGCCAGTG
* *
24059377 TAATAGAG
194 CAGTAGAG
* *
24059385 CAGATTAAAGCCACATCGGTGAATCTTACTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACA
1 CAGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACA
* *
24059450 ACAGCGAATCTTACTTCCCAGGTAGTGCAGTGGAACAGATTAAAGCCACAACAGTAAATCTTGCT
66 ACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTAAATCTTACT
* * * *
24059515 TTCTCGACATTGCAGTTAAAAGGATTGAAGTCACAACGATGAATCTCACTCTCTCAGCCAGTGCA
131 TTCCCAACATTGCAGTTAAAAGGATTAAAGTCACAACGACGAATCTCACTCTCTCAGCCAGTGCA
24059580 GTAGAG
196 GTAGAG
24059586 CAGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACA
1 CAGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACA
* * * * *
24059651 ACAGCGAATCTTACTTCCTAGGCAGTGCAGTGGAACAGATTGAAGCTACAACAGCAAATCTCACT
66 ACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTAAATCTTACT
* **
24059716 TCCCCAACATCACAGTTAA
131 TTCCCAACATTGCAGTTAA
24059735 GCAGATTAAG
Statistics
Matches: 463, Mismatches: 79, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
199 4 0.01
200 132 0.29
201 322 0.70
202 5 0.01
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (201 bp):
CAGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACA
ACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTAAATCTTACT
TTCCCAACATTGCAGTTAAAAGGATTAAAGTCACAACGACGAATCTCACTCTCTCAGCCAGTGCA
GTAGAG
Found at i:24063573 original size:43 final size:42
Alignment explanation
Indices: 24063525--24063704 Score: 188
Period size: 43 Copynumber: 4.2 Consensus size: 42
24063515 GCTTATAGAA
**
24063525 AAAAACGCCGCTAAAGATCATGTTCTTTTCCGGCGCTTTTTC
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTC
***
24063567 ATAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGGA
1 A-AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTC
* * *
24063610 AGAAAATGCCTCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTGTTC
1 A-AAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTTTTC
24063653 AAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTGTTTC
1 AAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTT-TTTC
*
24063696 ACAAACGCC
1 AAAAACGCC
24063705 ACTGTTTTGA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
42 38 0.32
43 80 0.68
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTC
Found at i:24064149 original size:21 final size:21
Alignment explanation
Indices: 24064125--24064193 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
24064115 GCTTCTATCG
*
24064125 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
24064146 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
24064167 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
24064188 GTGCTT
1 CTGCTT
24064194 TAAGTTGTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.01, C:0.42, G:0.22, T:0.35
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:24068213 original size:47 final size:47
Alignment explanation
Indices: 24068162--24068671 Score: 860
Period size: 47 Copynumber: 10.7 Consensus size: 47
24068152 TTAGGATTCT
* * *
24068162 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
24068209 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24068256 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24068303 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24068350 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
24068399 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24068446 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
24068495 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24068542 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
24068589 ATGTGATGAGATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGA-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
24068637 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24068672 TCCCGAAGGG
Statistics
Matches: 444, Mismatches: 13, Indels: 12
0.95 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 309 0.70
48 40 0.09
49 94 0.21
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:24068403 original size:96 final size:96
Alignment explanation
Indices: 24068183--24068671 Score: 855
Period size: 96 Copynumber: 5.1 Consensus size: 96
24068173 GTGAACATGC
*
24068183 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
24068248 AATGGCCGATGTGATGAATGTGAAAGTG--T
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
24068277 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
24068342 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
24068373 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
24068438 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
24068469 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
24068534 AATGGCCGATGTGATGAATGTGAAAGTG--T
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
24068563 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAGATGTGAAAGTGTATATATGTGACAGGGCC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAAGTGTATATATGTGATAAGGCC
* * * * *
24068628 GAGTGGCCAACGTGATGGATGTGAAAGTGTAT
65 TAATGGCCGATGTGATGAATGTGAAAGTGTAT
24068660 A-A-ATGTGATAAG
1 ATATATGTGATAAG
24068672 TCCCGAAGGG
Statistics
Matches: 382, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
94 128 0.34
95 61 0.16
96 191 0.50
97 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:24068443 original size:143 final size:141
Alignment explanation
Indices: 24068162--24068671 Score: 860
Period size: 143 Copynumber: 3.6 Consensus size: 141
24068152 TTAGGATTCT
* * *
24068162 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
24068226 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24068291 GCCTAATGGCCG
130 GCCTAATGGCCG
24068303 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
24068368 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
24068433 GGCCTAATGGCCG
129 GGCCTAATGGCCG
24068446 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
24068511 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
24068576 GGCCTAATGGCCG
129 GGCCTAATGGCCG
* * * * * * *
24068589 ATGTGATGAGATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 ATGTGATGA-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
24068654 GTGTATAAATGTGATAAG
65 GTGTATATATGTGATAAG
24068672 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 11, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
140 1 0.00
141 62 0.18
142 54 0.15
143 177 0.50
144 11 0.03
145 47 0.13
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCG
Found at i:24068845 original size:36 final size:37
Alignment explanation
Indices: 24068790--24068867 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
24068780 CCGAGCTCTA
* *
24068790 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
24068826 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24068863 AAGAC
1 AAGAC
24068868 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24070138 original size:40 final size:40
Alignment explanation
Indices: 24070083--24070512 Score: 610
Period size: 40 Copynumber: 10.8 Consensus size: 40
24070073 GAGAATTGAG
* *
24070083 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTTCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
24070123 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
24070163 AGTGATATATCCGGGCTAAGTCTCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
24070203 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
24070243 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
24070283 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
24070323 AGTCATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
24070363 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
24070403 AGTGATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
24070443 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTACT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
* * * *
24070483 GGTGTTATATTCGGGCTAGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
24070513 TAATCATGCT
Statistics
Matches: 361, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 358 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:24074129 original size:38 final size:40
Alignment explanation
Indices: 24074087--24074176 Score: 94
Period size: 45 Copynumber: 2.2 Consensus size: 40
24074077 TCTATGTGAT
24074087 GATGTGAA-CAT-GCATATATGAGATAAGGCCTAATGGCC
1 GATGTGAATCATAGCATATATGAGATAAGGCCTAATGGCC
* * *
24074125 GATGTGATGAATGTGATAGTATATATGTGATAAGGCCTAATGGCC
1 GA--TG-TGAA--TCATAGCATATATGAGATAAGGCCTAATGGCC
24074170 GATGTGA
1 GATGTGA
24074177 TGAATGTGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
38 2 0.05
40 2 0.05
41 4 0.10
42 3 0.07
43 2 0.05
44 2 0.05
45 27 0.64
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (40 bp):
GATGTGAATCATAGCATATATGAGATAAGGCCTAATGGCC
Found at i:24074212 original size:47 final size:47
Alignment explanation
Indices: 24074080--24074583 Score: 881
Period size: 47 Copynumber: 10.7 Consensus size: 47
24074070 TTAGGATTCT
* *
24074080 ATGTGATG-ATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
24074126 ATGTGATGAATGTGATA--GTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24074171 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24074218 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
24074265 ATGTGATGAATGTGAAAGTATATATATGTGATAAGACCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24074312 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24074359 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24074406 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
24074455 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24074502 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
24074549 ATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24074584 CCCCGAAGGG
Statistics
Matches: 441, Mismatches: 12, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
45 42 0.10
46 9 0.02
47 343 0.78
49 47 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:24074758 original size:37 final size:37
Alignment explanation
Indices: 24074702--24074780 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
24074692 CCGAGCTCTA
* * * *
24074702 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCCGGT
*
24074739 AAGACCCGATAACTTCGTGTGGAGATTATGTCCCGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCCGGT
24074776 AAGAC
1 AAGAC
24074781 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCCGGT
Found at i:24076385 original size:9 final size:9
Alignment explanation
Indices: 24076371--24076621 Score: 167
Period size: 9 Copynumber: 29.8 Consensus size: 9
24076361 AAGTTATTTA
24076371 TTATGTAAG
1 TTATGTAAG
24076380 TTATGTAAG
1 TTATGTAAG
*
24076389 TTGTGTAAG
1 TTATGTAAG
24076398 TTATGTAAG
1 TTATGTAAG
* *
24076407 CTGTGTAAG
1 TTATGTAAG
*
24076416 TTGTGT-A-
1 TTATGTAAG
* *
24076423 TTATGAAAC
1 TTATGTAAG
24076432 TTATGTAAG
1 TTATGTAAG
*
24076441 TTGTGT-A-
1 TTATGTAAG
**
24076448 TTAAATAAG
1 TTATGTAAG
*
24076457 TTATGTCAG
1 TTATGTAAG
*
24076466 TTCTGT-A-
1 TTATGTAAG
* *
24076473 TTATGAAAC
1 TTATGTAAG
24076482 TTATGTAAG
1 TTATGTAAG
*
24076491 TTATGT--C
1 TTATGTAAG
24076498 TTATGTAAG
1 TTATGTAAG
*
24076507 TTATGTAAA
1 TTATGTAAG
*
24076516 ATATGT-A-
1 TTATGTAAG
24076523 TTATGTAAG
1 TTATGTAAG
*
24076532 TTATGTCAG
1 TTATGTAAG
*
24076541 TTGTGT-A-
1 TTATGTAAG
*
24076548 TTATGTAAA
1 TTATGTAAG
24076557 TTATGT-A-
1 TTATGTAAG
24076564 TTATGTAAG
1 TTATGTAAG
*
24076573 TTATGTAAT
1 TTATGTAAG
*
24076582 TTGTGT-A-
1 TTATGTAAG
*
24076589 TTATGTAAC
1 TTATGTAAG
* *
24076598 TTATTTAAT
1 TTATGTAAG
24076607 TTATGTAAG
1 TTATGTAAG
24076616 -TATGTA
1 TTATGTA
24076622 TTATTATGTA
Statistics
Matches: 190, Mismatches: 36, Indels: 33
0.73 0.14 0.13
Matches are distributed among these distances:
7 38 0.20
8 20 0.11
9 132 0.69
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:24076389 original size:25 final size:25
Alignment explanation
Indices: 24076360--24076668 Score: 225
Period size: 25 Copynumber: 12.2 Consensus size: 25
24076350 GATTTAGGAA
* *
24076360 TAAGTTATTTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* *
24076385 TAAGTTGTGTAAGTTATGTAAGCTGTG
1 TAAGTTGTGT-A-TTATGTAAGTTATG
* *
24076412 TAAGTTGTGTATTATGAAACTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
**
24076437 TAAGTTGTGTATTAAATAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* * * *
24076462 TCAGTTCTGTATTATGAAACTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* *
24076487 TAAGTTATGTCTTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
** *
24076512 TAAAATATGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* *
24076537 TCAGTTGTGTATTATGTAAATTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* * *
24076562 T-A-TTATGTAAGTTATGTAATTTGTG
1 TAAGTTGTGT-A-TTATGTAAGTTATG
* * *
24076587 T-A-TTATGTAACTTATTTAATTTATG
1 TAAGTTGTGT-A-TTATGTAAGTTATG
* *
24076612 TAAGTATGTATTATTATGTAATTTAT-
1 TAAGT-TGT-GTATTATGTAAGTTATG
* * *
24076638 TATGTAG-GATATTATCTAAGTTATG
1 TAAGTTGTG-TATTATGTAAGTTATG
24076663 TAAGTT
1 TAAGTT
24076669 TTTTTTTTGG
Statistics
Matches: 227, Mismatches: 47, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
23 5 0.02
24 15 0.07
25 161 0.71
26 7 0.03
27 35 0.15
28 3 0.01
29 1 0.00
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (25 bp):
TAAGTTGTGTATTATGTAAGTTATG
Found at i:24076500 original size:16 final size:16
Alignment explanation
Indices: 24076482--24076579 Score: 101
Period size: 16 Copynumber: 6.0 Consensus size: 16
24076472 ATTATGAAAC
*
24076482 TTATGTAAGTTATGTC
1 TTATGTAAGTTATGTA
24076498 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
24076516 ATATGT-A-TTATGTAA
1 TTATGTAAGTTATGT-A
* *
24076531 GTTATGTCAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
24076548 TTATGTAAATTATGTA
1 TTATGTAAGTTATGTA
24076564 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
24076580 ATTTGTGTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
15 2 0.03
16 54 0.78
17 3 0.04
18 10 0.14
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:24076552 original size:41 final size:40
Alignment explanation
Indices: 24076482--24076596 Score: 160
Period size: 41 Copynumber: 2.8 Consensus size: 40
24076472 ATTATGAAAC
*
24076482 TTATGTAAGTTATGTC-TTATGTAAGTTATGTAAAATATGTA
1 TTATGTAAGTTATGTCATTGTGT-A-TTATGTAAAATATGTA
*
24076523 TTATGTAAGTTATGTCAGTTGTGTATTATGTAAATTATGTA
1 TTATGTAAGTTATGTCA-TTGTGTATTATGTAAAATATGTA
*
24076564 TTATGTAAGTTATGTAATTTGTGTATTATGTAA
1 TTATGTAAGTTATGTCA-TTGTGTATTATGTAA
24076597 CTTATTTAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
41 62 0.91
42 1 0.01
43 5 0.07
ACGTcount: A:0.31, C:0.02, G:0.18, T:0.49
Consensus pattern (40 bp):
TTATGTAAGTTATGTCATTGTGTATTATGTAAAATATGTA
Found at i:24076754 original size:24 final size:26
Alignment explanation
Indices: 24076711--24076765 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
24076701 TTATGTTCGG
* *
24076711 TATGTGTTATTATGTAAGTTCTTTAT
1 TATGTGTTATTATGTAAGTTATGTAT
*
24076737 TATGT-TTGTTATGT-AGTTATGTAT
1 TATGTGTTATTATGTAAGTTATGTAT
24076761 TATGT
1 TATGT
24076766 AAGATATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 13 0.50
25 8 0.31
26 5 0.19
ACGTcount: A:0.22, C:0.02, G:0.18, T:0.58
Consensus pattern (26 bp):
TATGTGTTATTATGTAAGTTATGTAT
Found at i:24076959 original size:15 final size:15
Alignment explanation
Indices: 24076939--24076971 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
24076929 ATAATTATTT
*
24076939 ATAAATTTAATAGTA
1 ATAAATTTAATACTA
24076954 ATAAATTTAATACTA
1 ATAAATTTAATACTA
24076969 ATA
1 ATA
24076972 TAGAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:24078213 original size:25 final size:24
Alignment explanation
Indices: 24078179--24078232 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
24078169 TGGGGGAATA
24078179 GGAATTGGGGGGAA-ATGAAATCGG
1 GGAATTGGGGGGAATATGAAAT-GG
24078203 GGAATTGGGGGGAATATGAAATGG
1 GGAATTGGGGGGAATATGAAATGG
*
24078227 GAAATT
1 GGAATT
24078233 AGGGAATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.35, C:0.02, G:0.43, T:0.20
Consensus pattern (24 bp):
GGAATTGGGGGGAATATGAAATGG
Found at i:24078214 original size:40 final size:40
Alignment explanation
Indices: 24078148--24078227 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
24078138 TGGGGATTTA
* *
24078148 GGGAAATTAAATCGGGGAAACTGGGGGAATAGGAATTGGG
1 GGGAAATGAAATCGGGGAAACTGGGGGAATAGGAAATGGG
* *
24078188 GGGAAATGAAATCGGGG-AATTGGGGGGAATATGAAATGGG
1 GGGAAATGAAATCGGGGAAACT-GGGGGAATAGGAAATGGG
24078228 AAATTAGGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.09
40 32 0.91
ACGTcount: A:0.35, C:0.04, G:0.44, T:0.17
Consensus pattern (40 bp):
GGGAAATGAAATCGGGGAAACTGGGGGAATAGGAAATGGG
Found at i:24078789 original size:21 final size:21
Alignment explanation
Indices: 24078765--24078814 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
24078755 ATAGGCCCCT
24078765 AACTTTAACCCGTAACCTTTA
1 AACTTTAACCCGTAACCTTTA
*
24078786 AACTTAAACCCGTAACCTTTA
1 AACTTTAACCCGTAACCTTTA
24078807 AACTTTAA
1 AACTTTAA
24078815 ACTCTTAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (21 bp):
AACTTTAACCCGTAACCTTTA
Found at i:24078802 original size:28 final size:29
Alignment explanation
Indices: 24078770--24078826 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
24078760 CCCCTAACTT
*
24078770 TAACCCGTAACCTTTAAA-CTTAAACCCG
1 TAACCCGTAAACTTTAAACCTTAAACCCG
**
24078798 TAACCTTTAAACTTTAAACTCTTAAACCC
1 TAACCCGTAAACTTTAAAC-CTTAAACCC
24078827 TATACTACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 15 0.62
30 9 0.38
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.30
Consensus pattern (29 bp):
TAACCCGTAAACTTTAAACCTTAAACCCG
Found at i:24079828 original size:266 final size:266
Alignment explanation
Indices: 24079411--24080211 Score: 1368
Period size: 266 Copynumber: 3.0 Consensus size: 266
24079401 GTATTTTTCT
*
24079411 TTTTTGTGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
24079476 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACAAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACAAA
*
24079541 ACACTGCGTTTTGTTAAGATACGTTGCGACGCTTTGGATCAAGCGCCGCTAAAGCTATTCTTTAA
131 ACACTGCGTTTTGTTAAGATACGTTGCGACGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
24079606 CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
196 CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
24079671 AAGATA
261 AAGATA
* *
24079677 TTTTTGCGGTGTTTTAACGTCAGCGTCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* * *
24079742 TTGGTTTAGATATTTTGCGGCGTTTTCCTATAGGCGCCACTAAATGTAACATAGCTTAAGACCAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACAAA
* * *
24079807 ACACTGAGTTTTGTTAAGATACGCTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
131 ACACTGCGTTTTGTTAAGATACGTTGCGACGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
*
24079872 CGGCGTTTTCTAGTAAGCGCCAC-----TAA-TATA-ATCAAAATTAAAACTATGCGTTTTAGTT
196 CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
24079930 AAGATA
261 AAGATA
* *
24079936 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGATGCATT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* *
24080001 TTGGTTCAGATTTTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACTAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACAAA
24080066 ACACTGCGTTTTGTTAAGATACGTTGC-AGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTA
131 ACACTGCGTTTTGTTAAGATACGTTGCGA-CGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTA
* *
24080130 ATGGCGTTTTCTAGTAAGCGCCACTAATATAGGTATACATCAAAATTAAAACTACGCGTTTTAGT
195 ACGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
*
24080195 AAAGATA
260 TAAGATA
24080202 -TTTTGCGGCG
1 TTTTTGCGGCG
24080212 CTTTCTACGA
Statistics
Matches: 501, Mismatches: 26, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
259 238 0.48
260 4 0.01
261 3 0.01
264 2 0.00
265 14 0.03
266 240 0.48
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (266 bp):
TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACAAA
ACACTGCGTTTTGTTAAGATACGTTGCGACGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
AAGATA
Found at i:24080341 original size:116 final size:113
Alignment explanation
Indices: 24080185--24080425 Score: 288
Period size: 113 Copynumber: 2.1 Consensus size: 113
24080175 TTAAAACTAC
* * * * *
24080185 GCGTTTTAGTAAAGATATTTTGCGGCGCTTTCTACGAAACGCCGCTAATACGGTGCTTTAGCGGC
1 GCGTTTTGGTTAAGATATTTTGCGGCGCTATCTACAAAACGCCGCTAAGAC---GCTTTAGCGGC
24080250 G-CATATCACAAAGCGCCACTAAATCTAGGATACAACAACACCAAAAACGAT
63 GTCATATCA-AAAGCGCCACTAAATCTAGGATACAACAACACCAAAAACGAT
* *
24080301 GCGTTTTGGTTAAGATATTTTGCGGCGCATATC-GCAAAACGCCGCTAAGACGCTTTCGCGGCGT
1 GCGTTTTGGTTAAGATATTTTGCGGCGC-TATCTACAAAACGCCGCTAAGACGCTTTAGCGGCGT
** * * * * * *
24080365 TTTTTTAGAAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGAT
65 CATATCAAAAGCGCCACTAAATCTAGGATACAACAACACCAAAAACGAT
24080414 GCGTTTTGGTTA
1 GCGTTTTGGTTA
24080426 GGAGAAATTA
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
113 61 0.56
114 3 0.03
116 41 0.38
117 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (113 bp):
GCGTTTTGGTTAAGATATTTTGCGGCGCTATCTACAAAACGCCGCTAAGACGCTTTAGCGGCGTC
ATATCAAAAGCGCCACTAAATCTAGGATACAACAACACCAAAAACGAT
Found at i:24080510 original size:114 final size:114
Alignment explanation
Indices: 24080260--24080574 Score: 377
Period size: 113 Copynumber: 2.8 Consensus size: 114
24080250 GCATATCACA
* * * * *
24080260 AAGCGCCACTAAATCTAGGATACAACAACACCAAAAACGATGCGTTTTGGTTAAGATATTTTGCG
1 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGATTTTGCG
* * * * * * *
24080325 GCGC-ATATCGCAAAACGCCGCTAAGACGCTTTCGCGGCGTTTTTTTAG
66 GCGCGTTGTTGTAAAACGCCGCTAAGACACTTTAGCGGCATTTTTTTAG
** *
24080373 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGAAATTACG
1 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGATTTTGCG
24080438 GCGCGTTGTTGTAAAACGCCGCTAAGACACTTTAGCGGCATGTTTTTT-G
66 GCGCGTTGTTGTAAAACGCCGCTAAGACACTTTAGCGGCAT-TTTTTTAG
* * * * * * *
24080487 AAGCGCCACTAATTCTTGCATACATAAAGA-TGAAAACGTTGCGTTTTGGATAGGAGATTTTGCG
1 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGATTTTGCG
* *
24080551 GCGCGTGGTTGT-AAATGCCGCTAA
66 GCGCGTTGTTGTAAAACGCCGCTAA
24080575 TGATGTTCTT
Statistics
Matches: 173, Mismatches: 27, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
112 11 0.06
113 100 0.58
114 56 0.32
115 6 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (114 bp):
AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGATTTTGCG
GCGCGTTGTTGTAAAACGCCGCTAAGACACTTTAGCGGCATTTTTTTAG
Found at i:24097354 original size:66 final size:66
Alignment explanation
Indices: 24097246--24097369 Score: 187
Period size: 66 Copynumber: 1.9 Consensus size: 66
24097236 ATCTGGATAG
* * *
24097246 CTGTCAAGTGTGGTGAAAATTCTAGATGGAATCTGGAGTTAACTCATGCAGCGACATTGCAGGCA
1 CTGTCAAGTGCGGTGAAAATTCTAGACGCAATCTGGAGTTAACTCATGCAGCGACATTGCAGGCA
24097311 A
66 A
* *
24097312 CTGTCAAGTGCGGTGACAATTCTGGACGCAATCTAGGA-TTAACTCATGCAGCGACATT
1 CTGTCAAGTGCGGTGAAAATTCTAGACGCAATCT-GGAGTTAACTCATGCAGCGACATT
24097370 AATGCAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
66 49 0.94
67 3 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (66 bp):
CTGTCAAGTGCGGTGAAAATTCTAGACGCAATCTGGAGTTAACTCATGCAGCGACATTGCAGGCA
A
Found at i:24100221 original size:16 final size:15
Alignment explanation
Indices: 24100188--24100225 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
24100178 GGATTTTAAA
24100188 TTTTTAAAAATAGTT
1 TTTTTAAAAATAGTT
24100203 TTTTTAAAATATA-TAT
1 TTTTTAAAA-ATAGT-T
24100219 TTTTTAA
1 TTTTTAA
24100226 TTTTTAGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTTTTAAAAATAGTT
Found at i:24100339 original size:60 final size:61
Alignment explanation
Indices: 24100236--24100352 Score: 164
Period size: 60 Copynumber: 1.9 Consensus size: 61
24100226 TTTTTAGTGG
* * ** *
24100236 TAGAACTAAATTGATAAATTTTGTAAATGTTGAGGGCCAAATTTATTAATTTTTTTATAAT
1 TAGAAATAAAGTGATAAATTTTGTAAACATTGAGGGCCAAATTTATTAAATTTTTTATAAT
* *
24100297 TAGAAATAAAGTGATAAATTTT-TAAACATTGAGGGCGAAATTTGTTAAATTTTTTA
1 TAGAAATAAAGTGATAAATTTTGTAAACATTGAGGGCCAAATTTATTAAATTTTTTA
24100353 GATTTAGGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
60 29 0.59
61 20 0.41
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.42
Consensus pattern (61 bp):
TAGAAATAAAGTGATAAATTTTGTAAACATTGAGGGCCAAATTTATTAAATTTTTTATAAT
Found at i:24101601 original size:17 final size:18
Alignment explanation
Indices: 24101581--24101619 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
24101571 TATATTACTA
24101581 ATTTTT-TTATTT-TATAT
1 ATTTTTATTATTTATA-AT
24101598 ATTTTTATTATTTATAAT
1 ATTTTTATTATTTATAAT
24101616 ATTT
1 ATTT
24101620 ATCACGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 12 0.60
19 2 0.10
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTTTATTATTTATAAT
Found at i:24101840 original size:21 final size:20
Alignment explanation
Indices: 24101810--24101855 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
24101800 AAGAAAAGGA
24101810 AAATTAATTACATTA-TTTT
1 AAATTAATTACATTAGTTTT
*
24101829 GAAATTATATTACTTTAGTTTT
1 -AAATTA-ATTACATTAGTTTT
24101851 AAATT
1 AAATT
24101856 GGAAAAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 13 0.57
22 4 0.17
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.52
Consensus pattern (20 bp):
AAATTAATTACATTAGTTTT
Found at i:24108540 original size:71 final size:71
Alignment explanation
Indices: 24108463--24108605 Score: 286
Period size: 71 Copynumber: 2.0 Consensus size: 71
24108453 ATCTTTATGA
24108463 TGTTTTTCATGCATAAGTGTTACGTTGTATTACCTTAAATATTATCAAAATATGTGAGTCAGATT
1 TGTTTTTCATGCATAAGTGTTACGTTGTATTACCTTAAATATTATCAAAATATGTGAGTCAGATT
24108528 TATTGC
66 TATTGC
24108534 TGTTTTTCATGCATAAGTGTTACGTTGTATTACCTTAAATATTATCAAAATATGTGAGTCAGATT
1 TGTTTTTCATGCATAAGTGTTACGTTGTATTACCTTAAATATTATCAAAATATGTGAGTCAGATT
24108599 TATTGC
66 TATTGC
24108605 T
1 T
24108606 AAGTACTATT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.44
Consensus pattern (71 bp):
TGTTTTTCATGCATAAGTGTTACGTTGTATTACCTTAAATATTATCAAAATATGTGAGTCAGATT
TATTGC
Found at i:24124895 original size:21 final size:21
Alignment explanation
Indices: 24124847--24124896 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
24124837 TGTGTTCTAC
*
24124847 CGATAGAAGTCCAGGTTGTAT
1 CGATAGAAGCCCAGGTTGTAT
*
24124868 CGGTAGAA-CCCAGAGTTGTAT
1 CGATAGAAGCCCAG-GTTGTAT
*
24124889 TGATAGAA
1 CGATAGAA
24124897 TTCCCAGTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (21 bp):
CGATAGAAGCCCAGGTTGTAT
Found at i:24129003 original size:40 final size:40
Alignment explanation
Indices: 24128919--24129124 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
24128909 CATAAGTGTT
*
24128919 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATATGCA
1 ATTCAGGGGTACCAAAGTAC-AATAGGGGCACGTATGTGCA
* *
24128960 ATTCAGGGGTGCCAAAGTACAATAGGGGCACGTATGTGTA
1 ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
* * * * *
24129000 ATTCAGGGGTACCGAAGTATAACAAGGGCATGTATGTGCA
1 ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
* *
24129040 ATTCAGGGGTATCGAAGTACAATAGGGGCACGTATGTGCA
1 ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
* * *
24129080 ATTTAGGGGTACCAAAGTACAACAGGGGCATGTATGTGCA
1 ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
24129120 ATTCA
1 ATTCA
24129125 CGTATAATTA
Statistics
Matches: 144, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 125 0.87
41 19 0.13
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.22
Consensus pattern (40 bp):
ATTCAGGGGTACCAAAGTACAATAGGGGCACGTATGTGCA
Found at i:24137418 original size:26 final size:26
Alignment explanation
Indices: 24137382--24137436 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
24137372 GTCCTATATT
* *
24137382 TCTTTTGCATTATCACACAATGAGAC
1 TCTTTTGCATTATCACACAAGGAAAC
24137408 TCTTTTGCATTATCACACAAGGAAAC
1 TCTTTTGCATTATCACACAAGGAAAC
24137434 TCT
1 TCT
24137437 ACTATACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.35
Consensus pattern (26 bp):
TCTTTTGCATTATCACACAAGGAAAC
Found at i:24151677 original size:38 final size:38
Alignment explanation
Indices: 24151601--24151753 Score: 135
Period size: 38 Copynumber: 4.0 Consensus size: 38
24151591 AACCTTTATT
* * * * * *
24151601 ACACCAACAATAAGCTTGCTAAGCACTAAGCTTGAATA
1 ACACCGACACTAAGCTTACTAAGCACAAAGCCTAAATA
* * *
24151639 ACACCGACACTAAGATTGCTAAGCGCAAAGCCTAAATA
1 ACACCGACACTAAGCTTACTAAGCACAAAGCCTAAATA
** * * * *
24151677 ACATTGGCACTAAGCCTACTAGGCACAAAGCCTAGATA
1 ACACCGACACTAAGCTTACTAAGCACAAAGCCTAAATA
** * *
24151715 ACATGGGCACTAAGCTTACTAGGCACAAAGCCTAAATA
1 ACACCGACACTAAGCTTACTAAGCACAAAGCCTAAATA
24151753 A
1 A
24151754 TGGTATAACT
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 96 1.00
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.18
Consensus pattern (38 bp):
ACACCGACACTAAGCTTACTAAGCACAAAGCCTAAATA
Found at i:24174328 original size:22 final size:22
Alignment explanation
Indices: 24174282--24174328 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
24174272 AGTTGAACTG
* *
24174282 CCAGTAAATTACAAACAAGCTA
1 CCAGTAAATTACAAACAAACCA
* *
24174304 CCAGTAAATTGCAAATAAACCA
1 CCAGTAAATTACAAACAAACCA
24174326 CCA
1 CCA
24174329 ATACTCCACG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.26, G:0.09, T:0.17
Consensus pattern (22 bp):
CCAGTAAATTACAAACAAACCA
Found at i:24177494 original size:25 final size:24
Alignment explanation
Indices: 24177434--24177513 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 24
24177424 ACACACCACT
*
24177434 GCTCGTATGAGCTTACCAATTTTA
1 GCTCGTATGAGCTTACCAATTTCA
*
24177458 GCTTGTGA-GAGCTTACCAATTCTCA
1 GCTCGT-ATGAGCTTACCAATT-TCA
* **
24177483 GCTCATATGAGCTTACTGATTTCCA
1 GCTCGTATGAGCTTACCAATTT-CA
24177508 GCTCGT
1 GCTCGT
24177514 GAGAGCATAC
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
24 20 0.44
25 25 0.56
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (24 bp):
GCTCGTATGAGCTTACCAATTTCA
Found at i:24177519 original size:25 final size:26
Alignment explanation
Indices: 24177457--24177528 Score: 69
Period size: 25 Copynumber: 2.8 Consensus size: 26
24177447 TACCAATTTT
* * *
24177457 AGCTTGTGAGAGCTTAC-CAATTCTC
1 AGCTCGTGAGAGCTTACTGATTTCTC
*
24177482 AGCTCAT-ATGAGCTTACTGATTTC-C
1 AGCTCGTGA-GAGCTTACTGATTTCTC
*
24177507 AGCTCGTGAGAGCATACTGATT
1 AGCTCGTGAGAGCTTACTGATT
24177529 CATAGCCCGT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 1 0.03
25 32 0.84
26 5 0.13
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (26 bp):
AGCTCGTGAGAGCTTACTGATTTCTC
Found at i:24179499 original size:15 final size:15
Alignment explanation
Indices: 24179481--24179510 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24179471 TTTAAAACGT
*
24179481 TTTAATATAAAATAG
1 TTTAATAAAAAATAG
24179496 TTTAATAAAAAATAG
1 TTTAATAAAAAATAG
24179511 ACTTACCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (15 bp):
TTTAATAAAAAATAG
Found at i:24190867 original size:174 final size:174
Alignment explanation
Indices: 24190542--24190876 Score: 390
Period size: 174 Copynumber: 1.9 Consensus size: 174
24190532 AATGATCCAA
* * * * * *
24190542 AGAAATTGTCTAGATCTTTTATTATCTTGCAATTGGAACTATTTAATATATTCAAAAGTACTAAG
1 AGAAATTGCCTAGATCTTTCATTATCTTACAATTGGAACTATTCAATATATTCAAAAGTAATAAC
* * * * **
24190607 TTTATGGATTCTAGAACTATTGCAAAAGAGATTCAAAGAATTGATTACCAAAGACAAAAGAATTT
66 CTAATGGATTCTAGAACCATTGCAAAAGAGATTCAAAGAATTGATTACCAAAAACAAAAGAACAT
* *
24190672 TGAGAATAAGAATTACATTGGAAGCATTTATTCAAATGATTTAG
131 TGAGAAAAAAAATTACATTGGAAGCATTTATTCAAATGATTTAG
* * * *
24190716 AGAAATTGCCTAGGTCTTTCATTTTCTTACAATTGGAACTATTCATTATGTTC-AAAGTAATAAC
1 AGAAATTGCCTAGATCTTTCATTATCTTACAATTGGAACTATTCAATATATTCAAAAGTAATAAC
* * ** *
24190780 CTAATGGATT-TAGATCCA-TGACAAAAGATATTCAAAGAATT-AGTTACACAAAAACGGAGGAA
66 CTAATGGATTCTAGAACCATTG-CAAAAGAGATTCAAAGAATTGA-TTAC-CAAAAACAAAAGAA
*
24190842 CATTGAGAAAAAAAAATTGCATTGGAAGCATTTAT
128 CATTGAG-AAAAAAAATTACATTGGAAGCATTTAT
24190877 CAGAACAAAG
Statistics
Matches: 133, Mismatches: 24, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
171 3 0.02
172 29 0.22
173 32 0.24
174 69 0.52
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (174 bp):
AGAAATTGCCTAGATCTTTCATTATCTTACAATTGGAACTATTCAATATATTCAAAAGTAATAAC
CTAATGGATTCTAGAACCATTGCAAAAGAGATTCAAAGAATTGATTACCAAAAACAAAAGAACAT
TGAGAAAAAAAATTACATTGGAAGCATTTATTCAAATGATTTAG
Found at i:24191402 original size:9 final size:9
Alignment explanation
Indices: 24191390--24191414 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
24191380 AAAAAATATA
24191390 TTTTAAATT
1 TTTTAAATT
24191399 TTTTAAATT
1 TTTTAAATT
24191408 TTTTAAA
1 TTTTAAA
24191415 AAATTCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTTAAATT
Found at i:24192151 original size:25 final size:25
Alignment explanation
Indices: 24192123--24192172 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
24192113 CAGGTAAGGC
*
24192123 TCCTTCTCCTTCTTCCGTGCTTCAT
1 TCCTTCTCCTTCTTCCATGCTTCAT
* * *
24192148 TCCTTTTTCTTCTTCCATTCTTCAT
1 TCCTTCTCCTTCTTCCATGCTTCAT
24192173 CTTCTCTTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.06, C:0.36, G:0.04, T:0.54
Consensus pattern (25 bp):
TCCTTCTCCTTCTTCCATGCTTCAT
Found at i:24195117 original size:30 final size:30
Alignment explanation
Indices: 24195081--24195137 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
24195071 TTATATTCGA
* *
24195081 TATTTTTGTAAGTGCAATACACATAAAGGG
1 TATTTTTGTAAGAGCAATACAAATAAAGGG
24195111 TATTTTTGTAAGAGCAATACAAATAAA
1 TATTTTTGTAAGAGCAATACAAATAAA
24195138 TATAATTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (30 bp):
TATTTTTGTAAGAGCAATACAAATAAAGGG
Found at i:24196587 original size:29 final size:30
Alignment explanation
Indices: 24196531--24196588 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
24196521 TTGGTAAATG
* *
24196531 TACTTTCATAAAATGTCTATGTGGTACTTA
1 TACTTTCATAAAATGTCAATGTGATACTTA
24196561 TACTTT-A-AAAATGTTCAATGTGATACTT
1 TACTTTCATAAAATG-TCAATGTGATACTT
24196589 GAACTATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 13 0.52
30 6 0.24
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (30 bp):
TACTTTCATAAAATGTCAATGTGATACTTA
Found at i:24205977 original size:14 final size:15
Alignment explanation
Indices: 24205954--24205986 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
24205944 CACTTTGTGG
*
24205954 TAATTTTATTT-TTT
1 TAATTATATTTATTT
24205968 TAATTATATTTATTT
1 TAATTATATTTATTT
24205983 TAAT
1 TAAT
24205987 AAATGTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TAATTATATTTATTT
Found at i:24207017 original size:26 final size:26
Alignment explanation
Indices: 24206986--24207041 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
24206976 TACTAGTGAT
* *
24206986 TTATTTTGTATTCTAATGTTAATTTC
1 TTATTTTATATTCCAATGTTAATTTC
*
24207012 TTATTTTATATTCCGATGTTAATTTC
1 TTATTTTATATTCCAATGTTAATTTC
24207038 TTAT
1 TTAT
24207042 GTCCCATGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (26 bp):
TTATTTTATATTCCAATGTTAATTTC
Found at i:24209124 original size:34 final size:34
Alignment explanation
Indices: 24209083--24209153 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
24209073 AAGTAATAAA
24209083 GAATATCACTGATTTCACATGTCAATTAAAGAAT
1 GAATATCACTGATTTCACATGTCAATTAAAGAAT
24209117 GAATATCACTGATTTCACATGTCAATTAAAGAAT
1 GAATATCACTGATTTCACATGTCAATTAAAGAAT
24209151 GAA
1 GAA
24209154 ACACACTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (34 bp):
GAATATCACTGATTTCACATGTCAATTAAAGAAT
Found at i:24210418 original size:14 final size:15
Alignment explanation
Indices: 24210399--24210427 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24210389 TTATGTTACT
24210399 AAAAATA-TAAAATA
1 AAAAATATTAAAATA
24210413 AAAAATATTAAAATA
1 AAAAATATTAAAATA
24210428 TAATTTTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAATATTAAAATA
Found at i:24211512 original size:376 final size:378
Alignment explanation
Indices: 24210797--24211529 Score: 896
Period size: 376 Copynumber: 1.9 Consensus size: 378
24210787 GCAAAAATAT
* * * * * * *
24210797 TTCAATTGATTACCAATAAAATATTTTTTAAAACCTATATAACAGAATTTTTTTGTTATTATGGT
1 TTCAATTAATTACCAATAAAATATTTGTAAAAACATATATAAAAGAATTTTCTTGTTATCA--GT
* ** **
24210862 CAAAAAAGTTAAATATCTTTAATTAAAAATGCCATTTTCCATATATTTTATTATTTATTTAAATT
64 CAAAAAAGTTAAATATCGTTAACGAAAAATGCCATGGTCCATATATTTTATTATTTATTTAAATT
* ** **
24210927 TATTTTTTTAATGTTTTCAATTTAACCTAGCCTTTTATTGTTGGTTAATAAGAAATTTCTTTTTT
129 TATTATTTTAACATTTTCAATTTAACC-AGCCTTTTATTGTTGGTTAATAAGAAATTTCTGGTTT
* * * * *
24210992 CTAGAACAATTTATATGCATTTATTAACTAAAAGTAAGTTAAATGTTTCTATAGATTTGATTTGA
193 CTACAACAAATTATATGCATTTATTAACTAAAAGTAAGCTAAATATTTCTATAGATTTGATTCGA
* *
24211057 TTTATTTGTATTTCTATAAGTACATATAAATAAAAAAAATTTGGTTAAAAATGTCATTGTATTCT
258 TTTATTTATATTTCTATAAGTACATATAAATAAAAAAAATTTGGCTAAAAATGTCATTGTATTCT
24211122 TGAACTTAAATCACTAATTCACTATATATATAAAATTTACAAATATGAAAAAACAC
323 TGAACTTAAATCACTAATTCACTATATATATAAAATTTACAAATATGAAAAAACAC
*
24211178 TTCAATTAATTATCAATAAAATATTTGTAAAAACATATATAAAAGAATTTTCTT-TTATCA-TCA
1 TTCAATTAATTACCAATAAAATATTTGTAAAAACATATATAAAAGAATTTTCTTGTTATCAGTCA
* * *
24211241 AACAAA-TTAAATATCGTTAACCGAAAAATGTCATGGT-CATGTATTTCATTATTATTTTTTTAA
66 AA-AAAGTTAAATATCGTTAA-CGAAAAATGCCATGGTCCATATA-TT--TTATTATTTATTTAA
* * * * *
24211304 TTTTATTATTTTAACATTTTCAATTTAA-C-G-TTTTTTTTTTTGGTTAATAAGAGATTT-TGGT
126 ATTTATTATTTTAACATTTTCAATTTAACCAGCCTTTTATTGTTGGTTAATAAGAAATTTCTGGT
* * *
24211365 TTC-ACAACAAATTATATGCATTTGTTATCTAACTTAAATTAAGCTAAATATTTCTATAGATTTT
191 TTCTACAACAAATTATATGCA--T-TTAT-TAACTAAAAGTAAGCTAAATATTTCTATAGATTTG
* ** *
24211429 ATTCGATTTATTTATCTTTCTATAAGTACATA-AAA-ATCAAAACTTTGGCTAAAAATGTCATTG
252 ATTCGATTTATTTATATTTCTATAAGTACATATAAATAAAAAAAATTTGGCTAAAAATGTCATTG
*
24211492 TATTCTCT-AGCTTAAATCACTAATTCACTATATATATA
317 TATTCT-TGAACTTAAATCACTAATTCACTATATATATA
24211530 CCTAAAATAT
Statistics
Matches: 301, Mismatches: 41, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
374 15 0.05
375 5 0.02
376 83 0.28
377 32 0.11
378 75 0.25
379 1 0.00
380 43 0.14
381 47 0.16
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.45
Consensus pattern (378 bp):
TTCAATTAATTACCAATAAAATATTTGTAAAAACATATATAAAAGAATTTTCTTGTTATCAGTCA
AAAAAGTTAAATATCGTTAACGAAAAATGCCATGGTCCATATATTTTATTATTTATTTAAATTTA
TTATTTTAACATTTTCAATTTAACCAGCCTTTTATTGTTGGTTAATAAGAAATTTCTGGTTTCTA
CAACAAATTATATGCATTTATTAACTAAAAGTAAGCTAAATATTTCTATAGATTTGATTCGATTT
ATTTATATTTCTATAAGTACATATAAATAAAAAAAATTTGGCTAAAAATGTCATTGTATTCTTGA
ACTTAAATCACTAATTCACTATATATATAAAATTTACAAATATGAAAAAACAC
Found at i:24212516 original size:17 final size:17
Alignment explanation
Indices: 24212477--24212518 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
24212467 GCCCAGATTA
24212477 CAGACCC-AATTAAACC
1 CAGACCCAAATTAAACC
* * *
24212493 TAAACCCAAATTTAACC
1 CAGACCCAAATTAAACC
24212510 CAGACCCAA
1 CAGACCCAA
24212519 CCTAAATTCC
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.45, C:0.36, G:0.05, T:0.14
Consensus pattern (17 bp):
CAGACCCAAATTAAACC
Found at i:24213513 original size:19 final size:20
Alignment explanation
Indices: 24213491--24213529 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
24213481 TAATTTGTTC
24213491 ATTTC-CTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
*
24213510 ATTTCTGTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
24213530 TTAGCCCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTCTCTTTTAATCCCAAA
Found at i:24213586 original size:19 final size:20
Alignment explanation
Indices: 24213559--24213598 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
24213549 ATTAGTTTAA
24213559 TATTAATTTATTATTATTAT
1 TATTAATTTATTATTATTAT
* *
24213579 TATT-ATTTGTTATTGTTAT
1 TATTAATTTATTATTATTAT
24213598 T
1 T
24213599 GACATTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TATTAATTTATTATTATTAT
Found at i:24218527 original size:8 final size:8
Alignment explanation
Indices: 24218514--24218587 Score: 58
Period size: 9 Copynumber: 8.4 Consensus size: 8
24218504 GTTCAGATTC
24218514 AATAAAAA
1 AATAAAAA
24218522 AATAAAAAA
1 AAT-AAAAA
24218531 AATAAAAA
1 AATAAAAA
24218539 AATCAAAATA
1 AAT-AAAA-A
*
24218549 AAAAAGAAA
1 AATAA-AAA
*
24218558 AAGAAAAA
1 AATAAAAA
*
24218566 GAAAAAATCAA
1 -AATAAA--AA
24218577 AATAAAAA
1 AATAAAAA
24218585 AAT
1 AAT
24218588 CAATCAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
8 19 0.35
9 24 0.44
10 10 0.18
11 2 0.04
ACGTcount: A:0.82, C:0.03, G:0.04, T:0.11
Consensus pattern (8 bp):
AATAAAAA
Found at i:24218546 original size:14 final size:14
Alignment explanation
Indices: 24218529--24218590 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 14
24218519 AAAAATAAAA
24218529 AAAATAAAAAAATC
1 AAAATAAAAAAATC
**
24218543 AAAATAAAAAAGAAAA
1 AAAAT-AAAAA-AATC
*
24218559 AGAAAAAGAAAAAATC
1 A-AAATA-AAAAAATC
24218575 AAAATAAAAAAATC
1 AAAATAAAAAAATC
24218589 AA
1 AA
24218591 TCAAAATCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
14 15 0.39
15 9 0.24
16 7 0.18
17 7 0.18
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.10
Consensus pattern (14 bp):
AAAATAAAAAAATC
Found at i:24218571 original size:32 final size:31
Alignment explanation
Indices: 24218514--24218587 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 31
24218504 GTTCAGATTC
24218514 AATAAAAAAATAAAAAAAATAAAAAAATCAA
1 AATAAAAAAATAAAAAAAATAAAAAAATCAA
24218545 AATAAAAAAGA-AAAAGAAAA-AGAAAAAATCAA
1 AATAAAAAA-ATAAAA-AAAATA-AAAAAATCAA
24218577 AATAAAAAAAT
1 AATAAAAAAAT
24218588 CAATCAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
31 15 0.38
32 24 0.62
ACGTcount: A:0.82, C:0.03, G:0.04, T:0.11
Consensus pattern (31 bp):
AATAAAAAAATAAAAAAAATAAAAAAATCAA
Found at i:24218635 original size:12 final size:13
Alignment explanation
Indices: 24218620--24218662 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
24218610 TGAGAATGAT
24218620 GAAAAGAAAAA-A
1 GAAAAGAAAAAGA
*
24218632 GAAAAGGAAAAATA
1 GAAAA-GAAAAAGA
24218646 -AAAAGAAAAAGA
1 GAAAAGAAAAAGA
24218658 GAAAA
1 GAAAA
24218663 AAGGAGAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.44
13 14 0.52
14 1 0.04
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (13 bp):
GAAAAGAAAAAGA
Found at i:24218810 original size:16 final size:16
Alignment explanation
Indices: 24218789--24218824 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
24218779 ATCATCGAAG
24218789 GCTTCTAATGGGTATT
1 GCTTCTAATGGGTATT
24218805 GCTTCTAATGGGTATT
1 GCTTCTAATGGGTATT
24218821 GCTT
1 GCTT
24218825 ACTTTTCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.25, T:0.44
Consensus pattern (16 bp):
GCTTCTAATGGGTATT
Found at i:24221340 original size:44 final size:44
Alignment explanation
Indices: 24220911--24221315 Score: 668
Period size: 44 Copynumber: 9.2 Consensus size: 44
24220901 CACAAAGCCT
*
24220911 TATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
24220955 TATCTCCCTGACCAGCAGTGAAATAGGTTGAAGAGTGTAAGCCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
24220999 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTACGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
24221043 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGCAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
24221087 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
24221131 TATCTCCCTGACCAGCTGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
24221175 TATCTCCTTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
24221219 TATCTCCCTGACCAGCAGTGGAGTAGGTGGAGGATTGTAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
24221263 TATCTCCCTGAACAACAGTGGAATAGGTTGAAGATTGT-AGATCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAG-TCC
*
24221307 TTTCTCCCT
1 TATCTCCCT
24221316 AAGCAGTAGT
Statistics
Matches: 336, Mismatches: 24, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
43 2 0.01
44 334 0.99
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:24221804 original size:17 final size:17
Alignment explanation
Indices: 24221765--24221806 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
24221755 GTCCAGACTA
24221765 CAGACCC-AATTAAACC
1 CAGACCCAAATTAAACC
* * *
24221781 TAAACCCAAATTTAACC
1 CAGACCCAAATTAAACC
24221798 CAGACCCAA
1 CAGACCCAA
24221807 CCTAAATTCC
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.45, C:0.36, G:0.05, T:0.14
Consensus pattern (17 bp):
CAGACCCAAATTAAACC
Found at i:24222970 original size:3 final size:3
Alignment explanation
Indices: 24222962--24223012 Score: 59
Period size: 3 Copynumber: 16.3 Consensus size: 3
24222952 TATATATATA
*
24222962 TAT TAT TAT GTAT ATAT TAT CAT CT-T TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT -TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
24223009 TAT T
1 TAT T
24223013 TCTCATGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
2 1 0.02
3 35 0.83
4 6 0.14
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:24239845 original size:26 final size:26
Alignment explanation
Indices: 24239789--24239851 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
24239779 ACTACTACAG
24239789 TAGTTTCAGAATACCATCAGATATAT
1 TAGTTTCAGAATACCATCAGATATAT
* * * *
24239815 CAGTTTCAGATTATCAT-AGCATGTAT
1 TAGTTTCAGAATACCATCAG-ATATAT
24239841 TAGTTTCAGAA
1 TAGTTTCAGAA
24239852 ACTTACAGGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
25 2 0.07
26 28 0.93
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (26 bp):
TAGTTTCAGAATACCATCAGATATAT
Found at i:24242624 original size:49 final size:49
Alignment explanation
Indices: 24242552--24242650 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
24242542 AAGCCTACTG
24242552 ACCAGAGATAAGGCTTTATTAATAAAAATACCAAAATTTTCCCAAGTCA
1 ACCAGAGATAAGGCTTTATTAATAAAAATACCAAAATTTTCCCAAGTCA
24242601 ACCAGAGATAAGGCTTTATTAATAAAAATACCAAAATTTTCCCAAGTCA
1 ACCAGAGATAAGGCTTTATTAATAAAAATACCAAAATTTTCCCAAGTCA
24242650 A
1 A
24242651 GGCTTGAGCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.26
Consensus pattern (49 bp):
ACCAGAGATAAGGCTTTATTAATAAAAATACCAAAATTTTCCCAAGTCA
Found at i:24243977 original size:11 final size:11
Alignment explanation
Indices: 24243963--24244023 Score: 69
Period size: 11 Copynumber: 5.9 Consensus size: 11
24243953 TTTTTTTTAA
24243963 TTTTAAAATAT
1 TTTTAAAATAT
24243974 TTTTAAAATAT
1 TTTTAAAATAT
24243985 TTTT-AAATACT
1 TTTTAAAATA-T
*
24243996 TTTT----TAA
1 TTTTAAAATAT
24244003 TTTTAAAATAT
1 TTTTAAAATAT
24244014 TTTTAAAATA
1 TTTTAAAATA
24244024 AATTTTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
7 4 0.09
8 2 0.05
10 5 0.12
11 32 0.74
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:24243987 original size:31 final size:31
Alignment explanation
Indices: 24243923--24243988 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
24243913 AATATTTTTA
**
24243923 TTTTTTTAATTTTAAAATACTTTTTTTAAAT
1 TTTTTTTAATTTTAAAATACTTTTTAAAAAT
24243954 TTTTTTTAATTTTAAAATA-TTTTTAAAATAT
1 TTTTTTTAATTTTAAAATACTTTTTAAAA-AT
24243985 TTTT
1 TTTT
24243989 AAATACTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTTTTTAATTTTAAAATACTTTTTAAAAAT
Found at i:24243988 original size:40 final size:41
Alignment explanation
Indices: 24243932--24244023 Score: 143
Period size: 40 Copynumber: 2.2 Consensus size: 41
24243922 ATTTTTTTAA
*
24243932 TTTTAAAATACTTTTTTTAAAT-TTTTTTTAATTTTAAAATAT
1 TTTTAAAATAC--TTTTTAAATACTTTTTTAATTTTAAAATAT
24243974 TTTTAAAATA-TTTTTAAATACTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTAAATACTTTTTTAATTTTAAAATAT
24244014 TTTTAAAATA
1 TTTTAAAATA
24244024 AATTTTTTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
39 9 0.19
40 29 0.60
42 10 0.21
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (41 bp):
TTTTAAAATACTTTTTAAATACTTTTTTAATTTTAAAATAT
Found at i:24244065 original size:24 final size:23
Alignment explanation
Indices: 24244012--24244068 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
24244002 ATTTTAAAAT
**
24244012 ATTTTTAAAATAAATTTTTTTTA
1 ATTTTTAAAATAAATTTTTGGTA
24244035 ATTTTTAAAATAAATTTTTGGTA
1 ATTTTTAAAATAAATTTTTGGTA
*
24244058 TTTATTTAAAA
1 ATT-TTTAAAA
24244069 AACAGGCCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 23 0.77
24 7 0.23
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
ATTTTTAAAATAAATTTTTGGTA
Found at i:24264424 original size:42 final size:42
Alignment explanation
Indices: 24264377--24264498 Score: 131
Period size: 42 Copynumber: 2.9 Consensus size: 42
24264367 ACTCCAATAT
* *
24264377 GTGATTTTGTATAAGACCATGTCTGGGATGTTGGCATCGTATA
1 GTGATTTTGTGTAAGACCATGTCTGGGAAGTTGGCATCG-ATA
*
24264420 -TGATTTTGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATA
1 GTGATTTTGTGTAAGACCATGTCTGGGA-AGTTGGCATCGATA
*** * *
24264461 GTTGATTACATGTAAGACCATGTTTGGGACGTTGGCAT
1 G-TGATTTTGTGTAAGACCATGTCTGGGAAGTTGGCAT
24264499 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
41 3 0.05
42 34 0.52
43 29 0.44
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (42 bp):
GTGATTTTGTGTAAGACCATGTCTGGGAAGTTGGCATCGATA
Found at i:24272074 original size:21 final size:19
Alignment explanation
Indices: 24272045--24272089 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
24272035 CAAGTTGTTA
*
24272045 GATTATTATGTTTAATTAAG
1 GATTATTATGTGT-ATTAAG
*
24272065 TGATTTTTATGTGTATTAAG
1 -GATTATTATGTGTATTAAG
24272085 GATTA
1 GATTA
24272090 AATTGTGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.19
20 6 0.29
21 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
GATTATTATGTGTATTAAG
Found at i:24272156 original size:457 final size:459
Alignment explanation
Indices: 24271541--24272453 Score: 1652
Period size: 457 Copynumber: 2.0 Consensus size: 459
24271531 AGAAATTGTT
*
24271541 GTTTTTGTTGTTTGATGATGGAAAATAAAATAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
1 GTTTTTGTTGTTTGATGATGGAAAATAAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
*
24271606 TTTAGTAAAAATTTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAA
66 TTTA-T---AATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAA
* * *
24271671 ATAAATTAAATAAATTGGCTGCTATGAACCTTAGTAAAATTTGGCTATATTTGAGTTTGGTGAAA
127 ATAAATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAA
24271736 TTTTGAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGAT
192 TTTTGAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGAT
* *
24271801 AAAGTGCTAATTTCCCTTTTACGTGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTT
257 AAAGTGCTAATTGCCCTTTTACGAGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTT
24271866 AAATTTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTT
322 AAATTTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTT
*
24271931 GTTGATTAGTCGTTCCGGTTCGTTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGT
387 GTTGATTAGTCGTTCCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGT
24271996 TTAATTAA
452 TTAATTAA
24272004 GTTTTTGTTGTTTGATGATGGAAAATAAAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGA-
1 GTTTTTGTTGTTTGATGATGGAAAAT-AAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGAT
24272068 TTTT-T-ATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAATA
65 TTTTATAATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAATA
*
24272131 AATGAAATAAATGGGCTGTTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTT
130 AATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTT
24272196 TGAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGATAAA
195 TGAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGATAAA
* *
24272261 GTGCTTATTGCCCTTTTATGAGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAA
260 GTGCTAATTGCCCTTTTACGAGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAA
24272326 TTTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTTGTT
325 TTTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTTGTT
*
24272391 GATTAGTCGTTTCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGTT
390 GATTAGTCGTTCCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGTT
24272454 AAACTGAATG
Statistics
Matches: 437, Mismatches: 12, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
457 370 0.85
461 1 0.00
463 30 0.07
464 36 0.08
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (459 bp):
GTTTTTGTTGTTTGATGATGGAAAATAAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
TTTATAATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAATAA
ATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTTT
GAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGATAAAG
TGCTAATTGCCCTTTTACGAGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAAT
TTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATCGGGGGAAATCAAAAGTTGTTG
ATTAGTCGTTCCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGTTTAA
TTAA
Found at i:24279397 original size:6 final size:6
Alignment explanation
Indices: 24279383--24279425 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
24279373 AAGTTTCTCA
*
24279383 AAATGG AAATCG AAATGG AAATGG AAATGAG AAATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG-G AAATG
24279426 ATACATTTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 21 0.62
7 13 0.38
ACGTcount: A:0.53, C:0.02, G:0.28, T:0.16
Consensus pattern (6 bp):
AAATGG
Found at i:24279418 original size:7 final size:7
Alignment explanation
Indices: 24279394--24279426 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
24279384 AATGGAAATC
24279394 GAAATG-
1 GAAATGA
24279400 GAAATG-
1 GAAATGA
24279406 GAAATGA
1 GAAATGA
24279413 GAAATGA
1 GAAATGA
24279420 GAAATGA
1 GAAATGA
24279427 TACATTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (7 bp):
GAAATGA
Found at i:24286440 original size:26 final size:26
Alignment explanation
Indices: 24286409--24286556 Score: 170
Period size: 26 Copynumber: 5.6 Consensus size: 26
24286399 CGGAGTTTGG
* * *
24286409 CACAAAGTCTTTCCTTCATATTACGC
1 CACAAAGGCTTTCCTTCATTTTATGC
* *
24286435 CACAAAGGCTTTCTTTCATTTTATGT
1 CACAAAGGCTTTCCTTCATTTTATGC
* *
24286461 CACAAAGGCTTTCTTTCATTTTACGC
1 CACAAAGGCTTTCCTTCATTTTATGC
* *
24286487 CACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGCTTTCC-TTCATTTTATGC
* *
24286514 CATAAAGGCGTTCCTTTCATTTTATGC
1 CACAAAGGCTTTCC-TTCATTTTATGC
*
24286541 CACAAAGGCATTCCTT
1 CACAAAGGCTTTCCTT
24286557 TCCTGATGTG
Statistics
Matches: 106, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 59 0.56
27 47 0.44
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (26 bp):
CACAAAGGCTTTCCTTCATTTTATGC
Found at i:24286473 original size:52 final size:53
Alignment explanation
Indices: 24286409--24286558 Score: 212
Period size: 52 Copynumber: 2.8 Consensus size: 53
24286399 CGGAGTTTGG
* * *
24286409 CACAAAGTCTTTCCTTCATATTACGCCACAAAGGC-TTTCTTTCATTTTATGT
1 CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCATTCCTTTCATTTTATGT
* *
24286461 CACAAAGGCTTTCTTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCATTCCTTTCATTTTATGT
* * *
24286514 CATAAAGGCGTTCCTTTCATTTTATGCCACAAAGGCATTCCTTTC
1 CACAAAGGCTTTCC-TTCATTTTACGCCACAAAGGCATTCCTTTC
24286559 CTGATGTGTT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 32 0.37
53 27 0.31
54 28 0.32
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (53 bp):
CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCATTCCTTTCATTTTATGT
Done.