Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 79 of 216
Found at i:24286509 original size:27 final size:26
Alignment explanation
Indices: 24286409--24286558 Score: 176
Period size: 27 Copynumber: 5.7 Consensus size: 26
24286399 CGGAGTTTGG
* * *
24286409 CACAAAGTCTTTCC-TTCATATTACGC
1 CACAAAGGC-TTCCTTTCATTTTATGC
* *
24286435 CACAAAGGCTTTCTTTCATTTTATGT
1 CACAAAGGCTTCCTTTCATTTTATGC
* *
24286461 CACAAAGGCTTTCTTTCATTTTACGC
1 CACAAAGGCTTCCTTTCATTTTATGC
*
24286487 CACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGC-TTCCTTTCATTTTATGC
*
24286514 CATAAAGGCGTTCCTTTCATTTTATGC
1 CACAAAGGC-TTCCTTTCATTTTATGC
24286541 CACAAAGGCATTCCTTTC
1 CACAAAGGC-TTCCTTTC
24286559 CTGATGTGTT
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
25 3 0.03
26 50 0.46
27 55 0.51
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (26 bp):
CACAAAGGCTTCCTTTCATTTTATGC
Found at i:24286549 original size:54 final size:52
Alignment explanation
Indices: 24286409--24286558 Score: 203
Period size: 54 Copynumber: 2.8 Consensus size: 52
24286399 CGGAGTTTGG
* * *
24286409 CACAAAGTCTTTCC-TTCATATTACGCCACAAAGGCTTTCTTTCATTTTATGT
1 CACAAAGGC-TTCCTTTCATTTTACGCCACAAAGGCTTCCTTTCATTTTATGT
*
24286461 CACAAAGGCTTTCTTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGCTTCCTTTCATTTTACGCCACAAAGGC-TTCCTTTCATTTTATGT
* *
24286514 CATAAAGGCGTTCCTTTCATTTTATGCCACAAAGGCATTCCTTTC
1 CACAAAGGC-TTCCTTTCATTTTACGCCACAAAGGC-TTCCTTTC
24286559 CTGATGTGTT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 3 0.03
52 28 0.32
53 24 0.28
54 32 0.37
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (52 bp):
CACAAAGGCTTCCTTTCATTTTACGCCACAAAGGCTTCCTTTCATTTTATGT
Found at i:24291876 original size:5 final size:5
Alignment explanation
Indices: 24291866--24291890 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24291856 TTTAACTAAG
24291866 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
24291891 GTTTCAATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:24293140 original size:12 final size:12
Alignment explanation
Indices: 24293105--24293142 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
24293095 TCATTTTGCA
24293105 AGAAAAATAATC
1 AGAAAAATAATC
*
24293117 AGCCAAAA-AATC
1 AG-AAAAATAATC
24293129 AGAAAAATAATC
1 AGAAAAATAATC
24293141 AG
1 AG
24293143 TGCTCGGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 4 0.18
12 14 0.64
13 4 0.18
ACGTcount: A:0.63, C:0.13, G:0.11, T:0.13
Consensus pattern (12 bp):
AGAAAAATAATC
Found at i:24299472 original size:17 final size:17
Alignment explanation
Indices: 24299452--24299484 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24299442 AACAAAAAAT
*
24299452 AAAATTTAAAATCAAAC
1 AAAATTTAAAAGCAAAC
24299469 AAAATTTAAAAGCAAA
1 AAAATTTAAAAGCAAA
24299485 GTCCTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAATTTAAAAGCAAAC
Found at i:24301037 original size:18 final size:19
Alignment explanation
Indices: 24301006--24301042 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
24300996 AAATCAAAAT
24301006 ATTAATTAAACT-AATTAA
1 ATTAATTAAACTAAATTAA
24301024 ATTAA-TAAACCTAAATTAA
1 ATTAATTAAA-CTAAATTAA
24301043 CCTAATGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAATTAAACTAAATTAA
Found at i:24301873 original size:20 final size:20
Alignment explanation
Indices: 24301848--24301921 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
24301838 ACATCCAGGA
24301848 TATGGCTCAACATAGGTTGC
1 TATGGCTCAACATAGGTTGC
*
24301868 TATGGCTCAACACAGGGTTTGC
1 TATGGCTCAACATA-GG-TTGC
* *
24301890 TATTGCTCAACATAGGTTGT
1 TATGGCTCAACATAGGTTGC
24301910 TATGGCTCAACA
1 TATGGCTCAACA
24301922 CAAGGTGCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
20 27 0.57
21 4 0.09
22 16 0.34
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (20 bp):
TATGGCTCAACATAGGTTGC
Found at i:24306347 original size:19 final size:19
Alignment explanation
Indices: 24306301--24306353 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
24306291 TATTAATCTA
24306301 TTCATTTTTTATTTTAATATT
1 TTCA-TTTTTA-TTTAATATT
*
24306322 TTTATTTTTATTTAAT-TT
1 TTCATTTTTATTTAATATT
*
24306340 TTACATTTTAATTT
1 TT-CATTTTTATTT
24306354 TTCGTTTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 4 0.14
19 15 0.54
20 6 0.21
21 3 0.11
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCATTTTTATTTAATATT
Found at i:24307507 original size:10 final size:10
Alignment explanation
Indices: 24307492--24307521 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24307482 TTTTTATTAC
24307492 TTAAAAAAAT
1 TTAAAAAAAT
24307502 TTAAAAAAA-
1 TTAAAAAAAT
24307511 TTAAAAAAAT
1 TTAAAAAAAT
24307521 T
1 T
24307522 CATTCATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TTAAAAAAAT
Found at i:24307509 original size:9 final size:9
Alignment explanation
Indices: 24307492--24307521 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
24307482 TTTTTATTAC
24307492 TTAAAAAAA
1 TTAAAAAAA
24307501 TTTAAAAAAA
1 -TTAAAAAAA
24307511 TTAAAAAAA
1 TTAAAAAAA
24307520 TT
1 TT
24307522 CATTCATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:24315934 original size:51 final size:51
Alignment explanation
Indices: 24315769--24315955 Score: 159
Period size: 51 Copynumber: 3.7 Consensus size: 51
24315759 AGTGAAAGTG
* * *
24315769 ATGGTCACGTGTGTAGTACTATGTGCAGACTACTACGTGTACCAGAATGATA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATGGTA
* * * * * * *
24315821 GAT--T-GCATGTGTAGTACTATGTGCAAGCTACTATGCGTACTGGATAGT-
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGGTA
* * ** *
24315869 TTCGATCATGTGTGTAGTACTATGTGCAGGCTACTACATGTATC-GAATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATGGTA
*
24315921 ATGGTCACATGTGTAGCACTATGTGCAGGCTACTA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
24315956 TGTGAATCGA
Statistics
Matches: 103, Mismatches: 25, Indels: 14
0.73 0.18 0.10
Matches are distributed among these distances:
47 1 0.01
49 5 0.05
50 30 0.29
51 63 0.61
52 2 0.02
53 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGGTA
Found at i:24316030 original size:45 final size:45
Alignment explanation
Indices: 24315966--24316053 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
24315956 TGTGAATCGA
* * *
24315966 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCGG
24316011 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACC
1 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACC
24316054 AAGTATCTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCGG
Found at i:24323491 original size:50 final size:50
Alignment explanation
Indices: 24323414--24323509 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
24323404 AGGTGCTAAT
24323414 ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTTGCAA
1 ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTTGCAA
* **
24323464 ATTTTGTTATATGTGGTATGTGGTGTATGCTTTATAAATGGAGTTT
1 ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTT
24323510 TAGCTTTGCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.25, C:0.04, G:0.23, T:0.48
Consensus pattern (50 bp):
ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTTGCAA
Found at i:24324285 original size:41 final size:41
Alignment explanation
Indices: 24324228--24324310 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
24324218 TGCAAGGGCA
24324228 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
1 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
24324269 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
1 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
24324310 T
1 T
24324311 AATACCTAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (41 bp):
TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
Found at i:24325930 original size:34 final size:34
Alignment explanation
Indices: 24325887--24325955 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
24325877 TGAGACCGAT
*
24325887 TCAGGACAAAGCTGTTGCTAAGCAATTCCAACTA
1 TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
24325921 TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
1 TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
24325955 T
1 T
24325956 AAGCCACCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (34 bp):
TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
Found at i:24335895 original size:105 final size:105
Alignment explanation
Indices: 24335760--24335972 Score: 390
Period size: 105 Copynumber: 2.0 Consensus size: 105
24335750 AAAACCCTAC
* *
24335760 ACATCACAGTAGTGACAACTGACAACACAAAACTAAAGAACCGATAACTGCTAGCAGTGAAGTGT
1 ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
* *
24335825 ATTAACCAAAGTTCATGTGCAGTCTCATTTTCATAGGCAT
66 ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
24335865 ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
1 ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
24335930 ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
66 ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
24335970 ACA
1 ACA
24335973 CCAATGCATG
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (105 bp):
ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCGATAACTGCTAGCAGTAAAGTGT
ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
Found at i:24337389 original size:12 final size:12
Alignment explanation
Indices: 24337372--24337397 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24337362 AAAGAGAAGA
24337372 AAGGGGTAAACC
1 AAGGGGTAAACC
24337384 AAGGGGTAAACC
1 AAGGGGTAAACC
24337396 AA
1 AA
24337398 AACGGGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.31, T:0.08
Consensus pattern (12 bp):
AAGGGGTAAACC
Found at i:24351558 original size:46 final size:46
Alignment explanation
Indices: 24351490--24351579 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
24351480 TTTATTGCAA
* *
24351490 TAAGAGTTTTAGTTTTATTTATTTTCTTTATTATATCAGGTTTTAT
1 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTTAT
*
24351536 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATTAGGTTTT
1 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTT
24351580 TATTTCCTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60
Consensus pattern (46 bp):
TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTTAT
Found at i:24353024 original size:46 final size:46
Alignment explanation
Indices: 24352946--24353035 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
24352936 TTTATTGCAA
* * * * *
24352946 TAAGATTTTTAGTCTTATTTATTTTCTTTATTATATCAGGTTTTAT
1 TAAGAGTTTTAATCTTACTTATATTCTCTATTATATCAGGTTTTAT
* *
24352992 TAAGAGTTTTAATTTTACTTATATTCTCTATTATATTAGGTTTT
1 TAAGAGTTTTAATCTTACTTATATTCTCTATTATATCAGGTTTT
24353036 TATTTCCTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.26, C:0.07, G:0.09, T:0.59
Consensus pattern (46 bp):
TAAGAGTTTTAATCTTACTTATATTCTCTATTATATCAGGTTTTAT
Found at i:24359675 original size:25 final size:25
Alignment explanation
Indices: 24359661--24359741 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
24359651 GTCCTAATAT
24359661 ATGGCTCTTCGGAGCTTCCCAATTA
1 ATGGCTCTTCGGAGCTTCCCAATTA
* * *
24359686 AAGGCTCTTTGTGAGCTTCCTAATTA
1 ATGGCTCTTCG-GAGCTTCCCAATTA
24359712 ATGGCTC-TCTGGAGCTTCCCAA-T-
1 ATGGCTCTTC-GGAGCTTCCCAATTA
24359735 ATGGCTC
1 ATGGCTC
24359742 GCTTGAACTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
23 7 0.15
24 1 0.02
25 20 0.42
26 20 0.42
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTCCCAATTA
Found at i:24359704 original size:26 final size:25
Alignment explanation
Indices: 24359663--24359734 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 25
24359653 CCTAATATAT
*
24359663 GGCTCTTCGGAGCTTCCCAATTAAA
1 GGCTCTTTGGAGCTTCCCAATTAAA
* *
24359688 GGCTCTTTGTGAGCTTCCTAATTAAT
1 GGCTCTTTG-GAGCTTCCCAATTAAA
*
24359714 GGCTCTCTGGAGCTTCCCAAT
1 GGCTCTTTGGAGCTTCCCAAT
24359735 ATGGCTCGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
25 19 0.46
26 22 0.54
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.33
Consensus pattern (25 bp):
GGCTCTTTGGAGCTTCCCAATTAAA
Found at i:24359752 original size:23 final size:25
Alignment explanation
Indices: 24359712--24359765 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 25
24359702 TTCCTAATTA
* *
24359712 ATGGCTCTCTGGAGCTT-CCCA-AT
1 ATGGCTCGCTGGAACTTCCCCATAT
*
24359735 ATGGCTCGCTTGAACTTCCCCATAT
1 ATGGCTCGCTGGAACTTCCCCATAT
24359760 ATGGCT
1 ATGGCT
24359766 ATCTAGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 14 0.54
24 4 0.15
25 8 0.31
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.31
Consensus pattern (25 bp):
ATGGCTCGCTGGAACTTCCCCATAT
Found at i:24359777 original size:25 final size:24
Alignment explanation
Indices: 24359712--24359777 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 24
24359702 TTCCTAATTA
*
24359712 ATGGCTCTCTGGAGCTT-CCCAAT
1 ATGGCTCTCTAGAGCTTCCCCAAT
* * *
24359735 ATGGCTCGCTTGAACTTCCCCATAT
1 ATGGCTCTCTAGAGCTTCCCCA-AT
*
24359760 ATGGCTATCTAGAGCTTC
1 ATGGCTCTCTAGAGCTTC
24359778 TTGATTAATG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 14 0.41
24 4 0.12
25 16 0.47
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.32
Consensus pattern (24 bp):
ATGGCTCTCTAGAGCTTCCCCAAT
Found at i:24359899 original size:25 final size:25
Alignment explanation
Indices: 24359843--24359917 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
24359833 TATGGTTATT
** *
24359843 ATGAGCTTCCCGTTATACAGCCCGA
1 ATGAGCTTCCCGTTATATGGCTCGA
*
24359868 ATAAGCTTCCCGTTATATGGCTC-A
1 ATGAGCTTCCCGTTATATGGCTCGA
*
24359892 CATGAGCTTCCTGTTATATGGCTCGA
1 -ATGAGCTTCCCGTTATATGGCTCGA
24359918 GAAAGAGATT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 1 0.02
25 40 0.95
26 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCGA
Found at i:24361008 original size:11 final size:11
Alignment explanation
Indices: 24360994--24361019 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24360984 ATTTTTTTAA
24360994 TTTTAAAATAC
1 TTTTAAAATAC
24361005 TTTTAAAATAC
1 TTTTAAAATAC
24361016 TTTT
1 TTTT
24361020 TTTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:24361113 original size:39 final size:40
Alignment explanation
Indices: 24360976--24361111 Score: 179
Period size: 39 Copynumber: 3.4 Consensus size: 40
24360966 AAATATTTTT
* *
24360976 ATTTTTTTATTTTTTTAATTTTAAAATACTTTTAAAAT-A
1 ATTTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATAA
* *
24361015 CTTTTTTTAAATTTTTTTTAATTTTAAAATATTTTTAAAATAC
1 ATTTTTTT-AA--TTTTTTAATTTTAAAATATTTTTAAAATAA
24361058 A--TTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATAA
1 ATTTTTTTAA-TTTTTTAATTTTAAAATATTTTTAAAATAA
24361097 ATTTTTTTAATTTTT
1 ATTTTTTTAATTTTT
24361112 AAAATAAATT
Statistics
Matches: 85, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
39 38 0.45
40 8 0.09
41 12 0.14
42 27 0.32
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (40 bp):
ATTTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATAA
Found at i:24361131 original size:22 final size:21
Alignment explanation
Indices: 24361083--24361131 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 21
24361073 AATTTTAAAA
*
24361083 TATTTTTAAAATAAATTTTTT
1 TATTTTTAAAATAAATTTTTG
24361104 TAATTTTTAAAATAAATTTTTGG
1 T-ATTTTTAAAATAAATTTTT-G
24361127 TATTT
1 TATTT
24361132 ATTTAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTG
Found at i:24362482 original size:43 final size:42
Alignment explanation
Indices: 24362379--24362500 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
24362369 TACAATGCTA
* *
24362379 ACGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCC
1 ACGTCCCAGACGTGGTCTTACACGTAAACACATATCAATGCC
* *
24362421 ACTGTCCCAAACAG-GGTCTTACACGTAAACACA-AGTCGATGCC
1 AC-GTCCCAGAC-GTGGTCTTACACGTAAACACATA-TCAATGCC
* **
24362464 GACGTCCTAGACGTGGTCTTACACAAAAACACATATC
1 -ACGTCCCAGACGTGGTCTTACACGTAAACACATATC
24362501 GAAGGTCCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
42 4 0.06
43 58 0.88
44 4 0.06
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (42 bp):
ACGTCCCAGACGTGGTCTTACACGTAAACACATATCAATGCC
Found at i:24368374 original size:26 final size:25
Alignment explanation
Indices: 24368343--24368435 Score: 98
Period size: 26 Copynumber: 3.6 Consensus size: 25
24368333 GTCCCAATAT
24368343 ATGGCTCTTCGTGAGCTTTCCGATTA
1 ATGGCTCTTCG-GAGCTTTCCGATTA
* * *
24368369 AAGGCTCTTTGTGAGC-TTCCTAATTA
1 ATGGCTCTTCG-GAGCTTTCC-GATTA
* * *
24368395 ATGGCTATCCGGAGCTTCCCGATTA
1 ATGGCTCTTCGGAGCTTTCCGATTA
24368420 ATGGCTCTTCGGAGCT
1 ATGGCTCTTCGGAGCT
24368436 ACCCGTTATT
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
25 26 0.48
26 28 0.52
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTTCCGATTA
Found at i:24368440 original size:25 final size:26
Alignment explanation
Indices: 24368343--24368488 Score: 115
Period size: 25 Copynumber: 5.8 Consensus size: 26
24368333 GTCCCAATAT
*
24368343 ATGGCTCTTCGTGAGCTTTCCGATTA
1 ATGGCTCTTCGTGAGCTTCCCGATTA
* * **
24368369 AAGGCTCTTTGTGAGCTTCCTAATTA
1 ATGGCTCTTCGTGAGCTTCCCGATTA
* *
24368395 ATGGCTATCCG-GAGCTTCCCGATTA
1 ATGGCTCTTCGTGAGCTTCCCGATTA
*
24368420 ATGGCTCTTCG-GAGCTACCCG-TTA
1 ATGGCTCTTCGTGAGCTTCCCGATTA
* * * * **
24368444 TTTGCTC-GCATGAGCTTCCTAATT-
1 ATGGCTCTTCGTGAGCTTCCCGATTA
*
24368468 ATGGCTCTT-ATGAGCTTCCCG
1 ATGGCTCTTCGTGAGCTTCCCG
24368489 TTATATAGCT
Statistics
Matches: 91, Mismatches: 26, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
23 1 0.01
24 30 0.33
25 32 0.35
26 28 0.31
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
ATGGCTCTTCGTGAGCTTCCCGATTA
Found at i:24368508 original size:25 final size:25
Alignment explanation
Indices: 24368480--24368550 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
24368470 GGCTCTTATG
* *
24368480 AGCTTCCCGTTATATAGCTCGGATA
1 AGCTTCCCGTTATATGGCTCAGATA
* * *
24368505 AGCTTCCCGTTACATGGCTCATATG
1 AGCTTCCCGTTATATGGCTCAGATA
*
24368530 AGTTTCCCGTTATATGGCTCA
1 AGCTTCCCGTTATATGGCTCA
24368551 AGAGAAAGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (25 bp):
AGCTTCCCGTTATATGGCTCAGATA
Found at i:24370815 original size:17 final size:18
Alignment explanation
Indices: 24370795--24370837 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
24370785 ATTTTAATTA
24370795 TTATTAAGTA-TTTTAAG
1 TTATTAAGTAGTTTTAAG
* *
24370812 TTATTTAGTAGTTTTATG
1 TTATTAAGTAGTTTTAAG
*
24370830 TTAATAAG
1 TTATTAAG
24370838 AAAGTTTAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (18 bp):
TTATTAAGTAGTTTTAAG
Found at i:24377157 original size:24 final size:24
Alignment explanation
Indices: 24377130--24377179 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
24377120 AAAGGATGCA
24377130 ATTCAATTAACTCGGCTTCTCAGC
1 ATTCAATTAACTCGGCTTCTCAGC
24377154 ATTCAATTAACTCGGCTTCTCAGC
1 ATTCAATTAACTCGGCTTCTCAGC
24377178 AT
1 AT
24377180 GCTGTACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (24 bp):
ATTCAATTAACTCGGCTTCTCAGC
Found at i:24381142 original size:14 final size:15
Alignment explanation
Indices: 24381107--24381145 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
24381097 TCTTTATATA
24381107 TAATATTTATATGTC
1 TAATATTTATATGTC
* *
24381122 AAATATTTAT-TTTC
1 TAATATTTATATGTC
24381136 TAATATTTAT
1 TAATATTTAT
24381146 GGTTATGGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (15 bp):
TAATATTTATATGTC
Found at i:24382453 original size:10 final size:10
Alignment explanation
Indices: 24382438--24382464 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
24382428 GGAGTCCTAG
24382438 TAGCTTAATT
1 TAGCTTAATT
24382448 TAGCTTAATT
1 TAGCTTAATT
24382458 TAGCTTA
1 TAGCTTA
24382465 TTCTAGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (10 bp):
TAGCTTAATT
Found at i:24383222 original size:50 final size:50
Alignment explanation
Indices: 24383142--24383384 Score: 351
Period size: 50 Copynumber: 4.8 Consensus size: 50
24383132 ATTTGGGTAA
* *
24383142 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
24383192 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
24383242 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
24383292 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGTATGGGCACTGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
24383342 AGTACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24383385 TGTCATTATC
Statistics
Matches: 171, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
50 138 0.81
51 33 0.19
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:24384876 original size:27 final size:28
Alignment explanation
Indices: 24384846--24384900 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
24384836 TAAATTTTAA
24384846 ATTTTAAAATACTTTTAAAAT-ATTTTT
1 ATTTTAAAATACTTTTAAAATAATTTTT
* ** *
24384873 ATTTTTATTTATTTTTAAAATAATTTTT
1 ATTTTAAAATACTTTTAAAATAATTTTT
24384901 TAATGTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (28 bp):
ATTTTAAAATACTTTTAAAATAATTTTT
Found at i:24385114 original size:23 final size:23
Alignment explanation
Indices: 24385083--24385138 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
24385073 GTCCAAAGCT
*
24385083 AAATGTAAAATTATCGAAACCTA
1 AAATCTAAAATTATCGAAACCTA
* * *
24385106 AAATCTAAAAATTATTGATATCTA
1 AAATCT-AAAATTATCGAAACCTA
*
24385130 AATTCTAAA
1 AAATCTAAA
24385139 TAAAAACCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (23 bp):
AAATCTAAAATTATCGAAACCTA
Found at i:24385130 original size:24 final size:24
Alignment explanation
Indices: 24385089--24385138 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
24385079 AGCTAAATGT
24385089 AAAATTATCGAAACCTAAAATCTA
1 AAAATTATCGAAACCTAAAATCTA
* * * *
24385113 AAAATTATTGATATCTAAATTCTA
1 AAAATTATCGAAACCTAAAATCTA
24385137 AA
1 AA
24385139 TAAAAACCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAATTATCGAAACCTAAAATCTA
Found at i:24385569 original size:21 final size:21
Alignment explanation
Indices: 24385530--24385569 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
24385520 CCGTTCACTT
* *
24385530 TTGCTTCTCCCTTTGTTTTCC
1 TTGCTTCTCCATTTCTTTTCC
*
24385551 TTGCTTTTCCATTTCTTTT
1 TTGCTTCTCCATTTCTTTT
24385570 ACCAAATGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.03, C:0.28, G:0.07, T:0.62
Consensus pattern (21 bp):
TTGCTTCTCCATTTCTTTTCC
Found at i:24388270 original size:50 final size:50
Alignment explanation
Indices: 24388146--24388394 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
24388136 GATAATAACA
* * ** * *
24388146 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
24388197 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
24388247 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
24388297 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
24388352 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
24388395 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:24388324 original size:100 final size:104
Alignment explanation
Indices: 24388145--24388394 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
24388135 TGATAATAAC
**
24388145 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
24388210 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
24388247 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
24388310 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
24388352 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
24388395 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:24388510 original size:13 final size:13
Alignment explanation
Indices: 24388489--24388520 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
24388479 GCTTGGATCA
*
24388489 TCATCAAATAAAT
1 TCATAAAATAAAT
24388502 TCATAAAATAAAT
1 TCATAAAATAAAT
24388515 TCATAA
1 TCATAA
24388521 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:24388767 original size:30 final size:30
Alignment explanation
Indices: 24388732--24388789 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
24388722 CCTCGACTCT
*
24388732 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
24388762 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
24388790 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:24390115 original size:23 final size:22
Alignment explanation
Indices: 24390059--24390116 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
24390049 GTTATTTAAA
* *
24390059 CTCCATTTTTTTTCTTTTCTTT
1 CTCCATTTCTTTTCTTTGCTTT
* * *
24390081 CTTCACTACTTTTCTTTGCTCTT
1 CTCCATTTCTTTTCTTTGCT-TT
24390104 CTCCATTTCTTTT
1 CTCCATTTCTTTT
24390117 TGGTTGGTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.07, C:0.28, G:0.02, T:0.64
Consensus pattern (22 bp):
CTCCATTTCTTTTCTTTGCTTT
Found at i:24396806 original size:19 final size:19
Alignment explanation
Indices: 24396782--24396894 Score: 181
Period size: 19 Copynumber: 5.8 Consensus size: 19
24396772 AATTTTTGAG
24396782 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
24396801 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
24396820 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
24396841 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
24396860 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24396879 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
24396895 ATATATGATT
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
19 68 0.79
21 18 0.21
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24396827 original size:40 final size:40
Alignment explanation
Indices: 24396783--24396894 Score: 201
Period size: 40 Copynumber: 2.9 Consensus size: 40
24396773 ATTTTTGAGG
*
24396783 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
24396823 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
24396863 ATAT--AATCTTAGATATGATATGCAATCTTAGA
1 ATATGCAATCTTAGATATGATATGCAATCTTAGA
24396895 ATATATGATT
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
38 28 0.39
40 43 0.61
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
Found at i:24396849 original size:59 final size:56
Alignment explanation
Indices: 24396782--24396901 Score: 179
Period size: 59 Copynumber: 2.1 Consensus size: 56
24396772 AATTTTTGAG
*
24396782 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATACAATCCTAGATATG--ATATGCAATCTTAGA-AT
* *
24396841 GATATGCAATCTTAGATATGATATATAATCTTAGATATGATATGCAATCTTAGAAT
1 GATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGAAT
24396897 -ATATG
1 GATATG
24396902 ATTTTGTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
55 5 0.09
56 2 0.03
57 15 0.26
59 36 0.62
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (56 bp):
GATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGAAT
Found at i:24397694 original size:25 final size:26
Alignment explanation
Indices: 24397650--24397700 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
24397640 TGTACATGTA
24397650 TATATTTTTTTAAAACGAATATTTTCC
1 TATATTTTTTT-AAACGAATATTTTCC
*
24397677 TATATTTTTTT-AATGAATATTTTC
1 TATATTTTTTTAAACGAATATTTTC
24397701 ATATTTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.52
27 11 0.48
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.57
Consensus pattern (26 bp):
TATATTTTTTTAAACGAATATTTTCC
Found at i:24398542 original size:97 final size:98
Alignment explanation
Indices: 24398375--24398568 Score: 345
Period size: 97 Copynumber: 2.0 Consensus size: 98
24398365 AAAAATCATG
*
24398375 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGAGTGATTTCTT
24398440 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
24398473 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGA-TGTGCCCTAACGTATTGGGAGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGAGTGATTTCTT
*
24398537 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
24398569 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
97 60 0.65
98 32 0.35
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGAGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:24408917 original size:44 final size:44
Alignment explanation
Indices: 24408842--24409313 Score: 193
Period size: 44 Copynumber: 10.7 Consensus size: 44
24408832 CCAAGCCTTG
* * * * *
24408842 TCTCCCTCAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAGATCTTA
* * **
24408886 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAGATCTTA
* * ** * *
24408930 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ATCGTAGATCTTA
* * * * * *
24408974 TCTCCCTCAGCAGTAGCGGAGAAGGTTAAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAGATCTTA
* * **
24409018 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGA-CGGCGAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAG-ATCTTA
* * * ** * *
24409062 TCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ATCGTAGATCTTA
* * * * * *
24409106 TCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAGATCTTA
* * ** *
24409150 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAGATCTTA
* * ** * *
24409194 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ATCGTAGATCTTA
* * * * *
24409238 TCTCCCTCAGCAGTAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAGATCTTA
*
24409282 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
24409314 CGGCGGATCT
Statistics
Matches: 302, Mismatches: 95, Indels: 62
0.66 0.21 0.14
Matches are distributed among these distances:
42 15 0.05
43 26 0.09
44 228 0.75
45 20 0.07
46 13 0.04
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATCGTAGATCTTA
Found at i:24409453 original size:44 final size:43
Alignment explanation
Indices: 24409405--24410211 Score: 467
Period size: 44 Copynumber: 18.7 Consensus size: 43
24409395 TTGAAGATTG
* **
24409405 TAGATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * *** *
24409448 TTAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATC
1 -TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * *
24409490 TAG-TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACC
* * * * **
24409534 AAG-TCTTATC-CTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGC
1 TAGATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-ACC
* *
24409579 AAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * *
24409621 AATA-ATCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAACC
1 --TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * * * *
24409665 TTAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCACATC
1 -TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * * *
24409707 -AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACC
* * * * **
24409751 AAG-TCTTATC-CTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGC
1 TAGATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-ACC
* *
24409796 AAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * *
24409838 AATA-ATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACC
1 --TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * *** *
24409882 TTAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATC
1 -TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * * *
24409924 -AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACC
* * * * * **
24409968 AAG-TCTTATCAT-CCTAAAGTTACAGTGGGGCAGACTGAAGATGGC
1 TAGATCTTATC-TCCCTGAAGTTGCAGTGGAGCAGA-TTAA-A-ACC
* * * *
24410013 AAG-TCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * * *
24410055 GACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC
1 TA-GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * *** *
24410099 TTAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATC
1 -TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* * *
24410141 TAG-TCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAATAAGC
1 TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AACC
*
24410185 AAG-TCTTATCGT-CCTGAAGTTGCAGTG
1 TAGATCTTATC-TCCCTGAAGTTGCAGTG
24410212 AGGCAGACTA
Statistics
Matches: 595, Mismatches: 126, Indels: 84
0.74 0.16 0.10
Matches are distributed among these distances:
40 85 0.14
41 33 0.06
42 24 0.04
43 32 0.05
44 315 0.53
45 104 0.17
46 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (43 bp):
TAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
Found at i:24409460 original size:132 final size:132
Alignment explanation
Indices: 24408768--24409420 Score: 1162
Period size: 132 Copynumber: 4.9 Consensus size: 132
24408758 TTGCATTGAC
* * *
24408768 AGTGGATCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
24408833 CAAGCCTTGTCTCCCTCAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
24408898 GT
131 GT
*
24408900 AGTGGAGCAGATCGAAGATGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
24408965 CAAGCCTTGTCTCCCTCAGCAGTAGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAGTA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
24409030 GT
131 GT
* *
24409032 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
24409097 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
24409162 GT
131 GT
* *
24409164 AGTGGAGCAGATCGAAGATGGCGGATTTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
24409229 CAAGCCTTGTCTCCCTCAGCAGTAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
24409294 GT
131 GT
24409296 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
24409361 CAAGCCTTGTCTCCCTCAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCCTATCTCCCT
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
24409421 GAAGTTGCAG
Statistics
Matches: 495, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 495 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:24409603 original size:89 final size:86
Alignment explanation
Indices: 24409491--24410222 Score: 440
Period size: 89 Copynumber: 8.4 Consensus size: 86
24409481 GATCGCATCT
* *
24409491 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTCAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
*
24409556 CAGTGGGGCAGACTGAAGATGGCA
64 CAGTGGAGCAGA-TGAAGATGGCA
* * *
24409580 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCAATAATCCTATCTCCCTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCT-CCTGAAGT
* * * ** *
24409643 TTCAGTGGAGCGGATTAA-A-ACCTT
62 TGCAGTGGAGCAGATGAAGATGGC-A
* * * * * *
24409667 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCA-CATCAAATCTTATCTCCTTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCC-TGAAGTTG
*
24409729 CAGTGGAGCAGACT-AAG-TAAGCA
64 CAGTGGAGCAGA-TGAAGAT-GGCA
* * *
24409752 AGTCTTATC-CTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCT-CCTGAAGT
* *
24409816 TGCAGTGGAGCAGATTAA-A-GCCAA
62 TGCAGTGGAGCAGATGAAGATGGC-A
* * * * * * *
24409840 TAATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGT
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTC-CTGAAGT
* *
24409904 TGCAG-AGAGCAGATCG--CAT--CA
62 TGCAGTGGAGCAGAT-GAAGATGGCA
* * * *
24409925 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCATCCTAAAGTTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATC-TCCTGAAGTTG
*
24409990 CAGTGGGGCAGACTGAAGATGGCA
64 CAGTGGAGCAGA-TGAAGATGGCA
* * * ** *
24410014 AGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCCGACAA-TCCTATCTCCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CAAGTCTTATCT-CCTGAAGTT
* * ** *
24410078 GCAGTGGAGCGGATTAA-A-ACCTT
63 GCAGTGGAGCAGATGAAGATGGC-A
* * * * * *
24410101 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCTTATCTCCCTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCT-CCTGAAGTTG
* *
24410163 CAGTGAAGCAGACT-AA-ATAAGCA
64 CAGTGGAGCAGA-TGAAGAT-GGCA
24410186 AGTCTTATCGT-CCTGAAGTTGCAGT-GAGGCAGACTAA
1 AGTCTTATC-TCCCTGAAGTTGCAGTGGA-GCAGACTAA
24410223 AGATGACACT
Statistics
Matches: 503, Mismatches: 88, Indels: 106
0.72 0.13 0.15
Matches are distributed among these distances:
83 5 0.01
84 150 0.30
85 31 0.06
86 19 0.04
87 40 0.08
88 77 0.15
89 173 0.34
90 8 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (86 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCTGAAGTTGCA
GTGGAGCAGATGAAGATGGCA
Found at i:24409651 original size:217 final size:217
Alignment explanation
Indices: 24409408--24410227 Score: 1442
Period size: 217 Copynumber: 3.8 Consensus size: 217
24409398 AAGATTGTAG
*
24409408 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* *
24409473 AGAGAGCAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
24409538 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
24409603 GTGGAGCAGATTAAAGCCAATA
196 GTGGAGCAGATTAAAGCCAATA
*
24409625 ATCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
*
24409690 AGAGAGCAGATCACATCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
24409755 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
24409820 GTGGAGCAGATTAAAGCCAATA
196 GTGGAGCAGATTAAAGCCAATA
*
24409842 ATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
24409907 AGAGAGCAGATCGCATCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
* * * *
24409972 CTTATCATCCTAAAGTTACAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTA
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
* * *
24410037 GTGGAGTAGATTAAAGCCGACA
196 GTGGAGCAGATTAAAGCCAATA
24410059 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* * * * *
24410124 AGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAATAAGCAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
* * * *
24410189 CTTATCGTCCTGAAGTTGCAGTGAGGCAGACTAAAGATG
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATG
24410228 ACACTAATTT
Statistics
Matches: 577, Mismatches: 26, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
217 577 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (217 bp):
ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
AGAGAGCAGATCGCATCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTAAAGCCAATA
Found at i:24409716 original size:173 final size:173
Alignment explanation
Indices: 24409537--24409864 Score: 402
Period size: 173 Copynumber: 1.9 Consensus size: 173
24409527 AGTAAGCAAG
* * *
24409537 TCTTATCCTCC-TCAAGTTGCAGTGGGGCAGACTGAAG-ATGGCAAGTCTTAT-CTCCCTGAAGT
1 TCTTAT-CTCCTTCAAGTTGCAGTGGAGCAGACT-AAGTA-AGCAAGTCTTATCCT-CCTCAAGT
* * *
24409599 TGCAGTGGAGCAGA-TTAA-A-GCCAATAATCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAA
62 TGCAGTGGAGCAGACTGAAGATGCC-A-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
* *
24409661 AACC-TTAGATCTTATC-TCTCTGAAGTTGCAGAGAGCAGATCACATCAAA
125 AACCAATA-ATCCTATCTTC-CTGAAGTTGCAGAGAGCAGATCACATCAAA
*
24409710 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTCAAGTTGCA
1 TCTTATCTCCTTCAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTCAAGTTGCA
* * * * *
24409775 GTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
66 GTGGAGCAGACTGAAGATGCCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAA
24409840 TAATCCTATCTTCCTGAAGTTGCAG
131 TAATCCTATCTTCCTGAAGTTGCAG
24409865 TGGAGCGGAT
Statistics
Matches: 133, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
172 38 0.29
173 87 0.65
174 6 0.05
175 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (173 bp):
TCTTATCTCCTTCAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTCAAGTTGCA
GTGGAGCAGACTGAAGATGCCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAA
TAATCCTATCTTCCTGAAGTTGCAGAGAGCAGATCACATCAAA
Found at i:24410420 original size:19 final size:19
Alignment explanation
Indices: 24410396--24410527 Score: 210
Period size: 19 Copynumber: 6.8 Consensus size: 19
24410386 AATTTTTGAG
24410396 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
24410415 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
24410434 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24410453 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
24410474 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
** *
24410493 GATATATAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
24410512 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
24410528 ATATATGATT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
19 84 0.82
21 19 0.18
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24410463 original size:59 final size:57
Alignment explanation
Indices: 24410396--24410534 Score: 210
Period size: 59 Copynumber: 2.4 Consensus size: 57
24410386 AATTTTTGAG
*
24410396 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* * *
24410453 GATATATGCAATCTTAGATATGATATGCAATCTTAGATATGATATATAATCTTAGGTAT
1 G--ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
24410512 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
24410535 ATTTTGTAAT
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 16 0.21
59 53 0.70
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:24412129 original size:98 final size:98
Alignment explanation
Indices: 24412006--24412200 Score: 329
Period size: 98 Copynumber: 2.0 Consensus size: 98
24411996 AAAAATCATG
*
24412006 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGACC-TAACGTATTGGGTGTGATTTCT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTG-CCGTAACGTATTGGGTGTGATTTCT
24412070 TAAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
65 TAAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* **
24412104 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGGTCGTGCCGTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCGTAACGTATTGGGTGTGATTTCTT
*
24412169 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
24412201 TTTATTGTAT
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
97 2 0.02
98 89 0.98
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCGTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:24420992 original size:40 final size:40
Alignment explanation
Indices: 24420930--24421007 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
24420920 ATATTGTAAC
* **
24420930 CTTTAAACCCCAAAAATGAGAAGAACCATTATGAGGGAAT
1 CTTTAAACCCCAAAAATAAGAAGAACCACCATGAGGGAAT
** *
24420970 CTTTAAACCTTAAATATAAGAAGAACCACCATGAGGGA
1 CTTTAAACCCCAAAAATAAGAAGAACCACCATGAGGGA
24421008 GGGGTCGTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.45, C:0.18, G:0.17, T:0.21
Consensus pattern (40 bp):
CTTTAAACCCCAAAAATAAGAAGAACCACCATGAGGGAAT
Found at i:24428125 original size:23 final size:23
Alignment explanation
Indices: 24428097--24428153 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
24428087 GAAACTAAAA
*
24428097 TTTTCTTTTCTCTTACCTTGTAT
1 TTTTCTTTTATCTTACCTTGTAT
24428120 TTTTCTTTTATCTTACCTTGTAT
1 TTTTCTTTTATCTTACCTTGTAT
24428143 TTTTCTTTTAT
1 TTTTCTTTTAT
24428154 TGTCTTCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.68
Consensus pattern (23 bp):
TTTTCTTTTATCTTACCTTGTAT
Found at i:24428990 original size:27 final size:27
Alignment explanation
Indices: 24428952--24429078 Score: 103
Period size: 27 Copynumber: 4.7 Consensus size: 27
24428942 ACATGCAATA
*
24428952 AAATGGAAGCCTTTGTGGAAATCTATG
1 AAATGAAAGCCTTTGTGGAAATCTATG
* * * *
24428979 AAATGAAAGCCTTTATGGCAATATATT
1 AAATGAAAGCCTTTGTGGAAATCTATG
* * *
24429006 AAATTAAAGCCCTTGTGGAAATTTATG
1 AAATGAAAGCCTTTGTGGAAATCTATG
* **
24429033 AAATGGAAG-CTTTCGTGGCGATCTATGG
1 AAATGAAAGCCTTT-GTGGAAATCTAT-G
* * *
24429061 AAAGGAACGCCTTCGTGG
1 AAATGAAAGCCTTTGTGG
24429079 TGCATTCTAC
Statistics
Matches: 76, Mismatches: 21, Indels: 5
0.75 0.21 0.05
Matches are distributed among these distances:
26 3 0.04
27 59 0.78
28 11 0.14
29 3 0.04
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (27 bp):
AAATGAAAGCCTTTGTGGAAATCTATG
Found at i:24429218 original size:27 final size:27
Alignment explanation
Indices: 24429180--24429267 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
24429170 GAATGATAAC
* * *
24429180 TATGACAAACTCTGAAGGACTAGTAGG
1 TATGGCAAACTCTGAAGGAATAGTACG
* *
24429207 TATGGTAAACTCTGAAAGAATAGTACG
1 TATGGCAAACTCTGAAGGAATAGTACG
* * *
24429234 TATGGCGAACTTTGAAGGAATAAGTATG
1 TATGGCAAACTCTGAAGGAAT-AGTACG
24429262 TATGGC
1 TATGGC
24429268 GAGGTCTGAG
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 39 0.78
28 11 0.22
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.26
Consensus pattern (27 bp):
TATGGCAAACTCTGAAGGAATAGTACG
Found at i:24432124 original size:55 final size:54
Alignment explanation
Indices: 24432032--24432148 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
24432022 ATAAAAAATG
* * *
24432032 AAATGAAATTGGACCTCACAACAACGCCTTCACAACAAAATGTGACATAAATGAA
1 AAATGAAATTGGACATCACAACAACGCCTTCAAAACAAAATGTAACATAAAT-AA
* * ** *
24432087 GAATGAAATTGGACATCATAATTA-GCCTTCTAAAACAAAATGTAACATGAATAA
1 AAATGAAATTGGACATCACAACAACGCCTTC-AAAACAAAATGTAACATAAATAA
24432141 AAATGAAA
1 AAATGAAA
24432149 CCAAACCTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
54 15 0.29
55 37 0.71
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (54 bp):
AAATGAAATTGGACATCACAACAACGCCTTCAAAACAAAATGTAACATAAATAA
Found at i:24432242 original size:59 final size:59
Alignment explanation
Indices: 24432179--24432340 Score: 192
Period size: 54 Copynumber: 2.8 Consensus size: 59
24432169 ACTTAAATAG
24432179 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAA
1 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAA
* * * *
24432238 AATGCAACATAAATG---A--AAATGAAATTGGA-CTTCATAACCAGGCCTCTAAAATAG
1 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTT-AAAACTAGGCCTCTAAAACAA
* * * * *
24432292 GATGCAACATAAATGAAAATGAAATGAAACTAGACCTCACAACTAGGCC
1 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCC
24432341 CCTGGAAACA
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
53 3 0.03
54 44 0.51
56 1 0.01
57 1 0.01
59 35 0.41
60 2 0.02
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (59 bp):
AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAA
Found at i:24432247 original size:113 final size:114
Alignment explanation
Indices: 24432088--24432340 Score: 305
Period size: 113 Copynumber: 2.2 Consensus size: 114
24432078 ATAAATGAAG
* * * * *
24432088 AATGAAATTGGACATCATAATTA-GCCTTCTAAAACAAAATGTAACATGAATAAAAATGAAACCA
1 AATGAAATTGGACCTCAAAACTAGGCCTTCTAAAACAAAATGCAACATAAATAAAAATGAAACCA
*
24432152 AACCTCACAACCAAG-CTACTTAAATAGAATGCAACATAAATGAAAATGA
66 AACCTCACAACCAAGCCT-CTAAAATAGAATGCAACATAAATGAAAATGA
* * ***
24432201 AATGAAATTGGACCTTAAAACTAGGCC-TCTAAAACAAAATGCAACATAAATGAAAATGAAATTG
1 AATGAAATTGGACCTCAAAACTAGGCCTTCTAAAACAAAATGCAACATAAATAAAAATGAAACCA
* * * * *
24432265 GACTTCATAACCAGGCCTCTAAAATAGGATGCAACATAAATGAAAATGA
66 AACCTCACAACCAAGCCTCTAAAATAGAATGCAACATAAATGAAAATGA
* * *
24432314 AATGAAACTAGACCTCACAACTAGGCC
1 AATGAAATTGGACCTCAAAACTAGGCC
24432341 CCTGGAAACA
Statistics
Matches: 118, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
113 113 0.96
114 5 0.04
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.21
Consensus pattern (114 bp):
AATGAAATTGGACCTCAAAACTAGGCCTTCTAAAACAAAATGCAACATAAATAAAAATGAAACCA
AACCTCACAACCAAGCCTCTAAAATAGAATGCAACATAAATGAAAATGA
Found at i:24432282 original size:54 final size:54
Alignment explanation
Indices: 24432027--24432316 Score: 219
Period size: 54 Copynumber: 5.3 Consensus size: 54
24432017 TTCAAATAAA
* * * **
24432027 AAATG-AAATGAAATTGGACCTCACAACAACGCCT-TCACAACAAAATGTGACAT
1 AAATGAAAATGAAATTGGACCTCACAACCAGGCCTCT-AAAACAAAATGCAACAT
* * ** *
24432080 AAATGAAGAATGAAATTGGACATCATAATTA-GCCTTCTAAAACAAAATGTAACAT
1 AAATGAA-AATGAAATTGGACCTCACAACCAGGCC-TCTAAAACAAAATGCAACAT
* * **** * * * *
24432135 GAATAAAAATGAAACCAAACCTCACAACCAAG-CTACTTAAATAGAATGCAACAT
1 AAATGAAAATGAAATTGGACCTCACAACCAGGCCT-CTAAAACAAAATGCAACAT
* * *
24432189 AAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAAAATGCAACAT
1 AAATG---A--AAATGAAATTGGACCTCACAACCAGGCCTCTAAAACAAAATGCAACAT
* * * **
24432248 AAATGAAAATGAAATTGGACTTCATAACCAGGCCTCTAAAATAGGATGCAACAT
1 AAATGAAAATGAAATTGGACCTCACAACCAGGCCTCTAAAACAAAATGCAACAT
24432302 AAATGAAAATGAAAT
1 AAATGAAAATGAAAT
24432317 GAAACTAGAC
Statistics
Matches: 185, Mismatches: 40, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
53 6 0.03
54 94 0.51
55 41 0.22
56 2 0.01
57 1 0.01
59 39 0.21
60 2 0.01
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (54 bp):
AAATGAAAATGAAATTGGACCTCACAACCAGGCCTCTAAAACAAAATGCAACAT
Found at i:24437642 original size:11 final size:11
Alignment explanation
Indices: 24437616--24437653 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
24437606 AAACATGTTG
24437616 AATTTTA-ATT
1 AATTTTATATT
*
24437626 AATTTTATATC
1 AATTTTATATT
*
24437637 AATTTTTTATT
1 AATTTTATATT
24437648 AATTTT
1 AATTTT
24437654 GATTATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
AATTTTATATT
Found at i:24439538 original size:43 final size:43
Alignment explanation
Indices: 24439475--24439745 Score: 393
Period size: 43 Copynumber: 6.3 Consensus size: 43
24439465 TTACAGAAAT
** * * * **
24439475 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGC-TTAAAAAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
* *
24439517 AAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC-TTTACTCAT
1 -AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTA-TCAC
* *
24439561 AAATGCCGCTAAAGAACATGATCTTTAGCAGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
*
24439604 AAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
24439647 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
*
24439690 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
24439733 AAACGCCGCTAAA
1 AAACGCCGCTAAA
24439746 AGTACGATTC
Statistics
Matches: 210, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
43 205 0.98
44 5 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
Found at i:24441607 original size:40 final size:40
Alignment explanation
Indices: 24441544--24441628 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
24441534 TAGCTTGAAT
* * *
24441544 ATCAACACTTCAATATTTAATATGTAAGGAATTATCAAAA
1 ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
*
24441584 ATCAACATTTCAATAATTT-ATATGCAAGAAATTAACAAAA
1 ATCAACACTTCAAT-ATTTAATATGCAAGAAATTAACAAAA
24441624 ATCAA
1 ATCAA
24441629 TCTTACAACA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 36 0.90
41 4 0.10
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.31
Consensus pattern (40 bp):
ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
Found at i:24441644 original size:40 final size:40
Alignment explanation
Indices: 24441558--24441644 Score: 95
Period size: 40 Copynumber: 2.1 Consensus size: 40
24441548 ACACTTCAAT
* * * * *
24441558 ATTTAATATGTAAGGAATTATCAAAAATCAACATTTCAATA
1 ATTT-ATATGCAAGAAATTAACAAAAATCAACATTACAACA
24441599 ATTTATATGCAAGAAATTAACAAAAATCAATC-TTACAACA
1 ATTTATATGCAAGAAATTAACAAAAATCAA-CATTACAACA
*
24441639 GTTTAT
1 ATTTAT
24441645 GTGAAACAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
40 34 0.87
41 5 0.13
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.33
Consensus pattern (40 bp):
ATTTATATGCAAGAAATTAACAAAAATCAACATTACAACA
Found at i:24444477 original size:147 final size:146
Alignment explanation
Indices: 24444217--24444730 Score: 862
Period size: 147 Copynumber: 3.6 Consensus size: 146
24444207 AAGAAAATTT
*
24444217 ATTTTGAACAAAACGATGCCGTTTTGCTATTCTAAAAA---TTA-TTTTTTTATAAATTGATTTA
1 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTATTTTTTTTATAAATTGATTTA
* *
24444278 TTTTTTGCGGCG-TTTT-CAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGT
66 TTTTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGC
24444341 GCTGCAAAATTTTTTC
131 GCTGCAAAATTTTTTC
* *
24444357 ATTTTGAACAAAACGACGCCGTTCTGCTATTCTAAAAATTTTTTATTTTTTTTATAAACTGATTT
1 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAA-TTTTTATTTTTTTTATAAATTGATTT
*
24444422 ATTTTTTGCGGCGTTTTTATAGAAAATGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAG
65 ATTTTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAG
*
24444487 CGCTGCAAATTTTTTTC
130 CGCTGCAAAATTTTTTC
*
24444504 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTTATAAATTGATTT
1 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAA-ATTTTTATTTTTTTTATAAATTGATTT
*
24444569 ATTTTTTGCGGCGTTTTTATAGAAAACGCAGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAG
65 ATTTTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAG
*
24444634 CGCCGC-AAATTTTTTC
130 CGCTGCAAAATTTTTTC
*
24444650 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTAATTTTTTTATAAATTGATTTA
1 ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTATTTTTTTTATAAATTGATTTA
24444715 TTTTTTGCGGCGTTTT
66 TTTTTTGCGGCGTTTT
24444731 ACCTTTAGCG
Statistics
Matches: 350, Mismatches: 16, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
140 36 0.10
144 3 0.01
145 73 0.21
146 50 0.14
147 188 0.54
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (146 bp):
ATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTATTTTTTTTATAAATTGATTTA
TTTTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGC
GCTGCAAAATTTTTTC
Found at i:24445533 original size:14 final size:14
Alignment explanation
Indices: 24445514--24445547 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
24445504 AACCTTAAAT
24445514 CCCTAAC-TCTTAAC
1 CCCTAACATC-TAAC
24445528 CCCTAACATCTAAC
1 CCCTAACATCTAAC
24445542 CCCTAA
1 CCCTAA
24445548 ACCTTAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTAACATCTAAC
Found at i:24445569 original size:21 final size:21
Alignment explanation
Indices: 24445502--24445571 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
24445492 CCTGAATTCC
* *
24445502 TAAACCTTAAATCCCTAACTCT
1 TAAACCTTAAATCTC-AACACT
* * * *
24445524 TAACCCCTAACATCT-AACCCC
1 TAAACCTTAA-ATCTCAACACT
24445545 TAAACCTTAAATCTCAACACT
1 TAAACCTTAAATCTCAACACT
24445566 TAAACC
1 TAAACC
24445572 ATAATCCTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
20 4 0.11
21 22 0.59
22 8 0.22
23 3 0.08
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAACCTTAAATCTCAACACT
Found at i:24446335 original size:114 final size:113
Alignment explanation
Indices: 24446129--24446684 Score: 748
Period size: 113 Copynumber: 4.9 Consensus size: 113
24446119 TAAAATATTT
* * * *
24446129 TTAGCGGCACTTTTCAAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCATTGGGCT
1 TTAGCGGCGC-TTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
*
24446194 TAGGTTTTTTTGCGGCGCTTT-TCCAAAAACGCCGCTAAAGCCCTGGGCA
65 TAGGTTTTTTTGCGGCGCTTTCT-CAAAAACGCCGCTAAAGCCCTGAGCA
** *
24446243 TTAGCGGTACTTTACCAAAAACGCCGCTAAATCCCTGAAAGCTCAGAAAACGGCGTCGTTGGGCT
1 TTAGCGGCGCTTT-CCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
*
24446308 TAGGTTTTTTTGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCT-AGGCA
65 TAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGA-GCA
* * *
24446357 TTAGCGGTGC-TTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTTA-AAAACGGCGTCGTTAGGC
1 TTAGCGGCGCTTTCC--AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGC
* * * * *
24446420 TTAGGTTTTTTTGCGGTGCTTTCCCAAAAATGCCGCTAAAACCCCGAGCA
64 TTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCA
* * *
24446470 TTAGCGGCGCTTTCTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCATCGTTGGGCT
1 TTAGCGGCGCTTTC-CAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
*
24446535 TAGGTTTTTTTGCGGCGC-TTCCCAAAAACGCCGCTAAAGCCCTGAGCA
65 TAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCA
* * * * *
24446583 TTAGCGGCGCTTTCTTATAAACGCCTCTAAATCCCCGAAAGCT-TGAGAAACGACGTCGTTGGGC
1 TTAGCGGCGCTTTC-CAAAAACGCCGCTAAATCCCCGAAAGCTCAGA-AAACGGCGTCGTTGGGC
24446647 TTAGG-TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
64 TTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
24446685 TGCTTATTTT
Statistics
Matches: 399, Mismatches: 32, Indels: 23
0.88 0.07 0.05
Matches are distributed among these distances:
112 17 0.04
113 206 0.52
114 175 0.44
115 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (113 bp):
TTAGCGGCGCTTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTT
AGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCA
Found at i:24446531 original size:227 final size:226
Alignment explanation
Indices: 24446145--24446684 Score: 798
Period size: 227 Copynumber: 2.4 Consensus size: 226
24446135 GCACTTTTCA
* *
24446145 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCATTGGGCTTAGGTTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCT-TAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
* * * * * *
24446210 GCTTTTCCAAAAACGCCGCTAAAGCCCTGGGCATTAGCGGTACTTTACCAAAAACGCCGCTAAAT
65 GCTTTCCCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCACTTTACCAAAAACGCCACTAAAT
* * *
24446275 CCCTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAACGC
130 CCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGCGC-TTACCAAAAACGC
*
24446340 CGCTAAAGCCCT-AGGCATTAGCGGTGCTTCCTT
194 CGCTAAAGCCCTGA-GCATTAGCGGCGCTTCCTT
* *
24446373 AAAAACGCCGCTAAATCCCCGAAAGCTTAAAAACGGCGTCGTTAGGCTTAGGTTTTTTTGCGGTG
1 AAAAACGCCGCTAAATCCCCGAAAGCTTAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* * *
24446438 CTTTCCCAAAAATGCCGCTAAAACCCCGAGCATTAGCGGCGCTTT-CTTAAAAACGCCACTAAAT
66 CTTTCCCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCACTTTAC-CAAAAACGCCACTAAAT
*
24446502 CCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCCCAAAAACGCC
130 CCCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGCGCTTACCAAAAACGCC
*
24446567 GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTT
195 GCTAAAGCCCTGAGCATTAGCGGCGCTTCCTT
* * * *
24446599 ATAAACGCCTCTAAATCCCCGAAAGCTTGAGAAACGACGTCGTTGGGCTTAGG-TTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTT-AAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
*
24446663 GCTTTCTCAAAAACGCCGCTAA
65 GCTTTCCCAAAAACGCCGCTAA
24446685 TGCTTATTTT
Statistics
Matches: 282, Mismatches: 27, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
226 97 0.34
227 158 0.56
228 27 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (226 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTTAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCG
CTTTCCCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCACTTTACCAAAAACGCCACTAAATC
CCCGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGCGCTTACCAAAAACGCCG
CTAAAGCCCTGAGCATTAGCGGCGCTTCCTT
Found at i:24446770 original size:12 final size:12
Alignment explanation
Indices: 24446753--24446778 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24446743 TTTTTTATCC
24446753 AAACGCCGCTAA
1 AAACGCCGCTAA
24446765 AAACGCCGCTAA
1 AAACGCCGCTAA
24446777 AA
1 AA
24446779 GCCTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:24447389 original size:27 final size:27
Alignment explanation
Indices: 24447329--24447389 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
24447319 ATCATCTCTT
*
24447329 GTTATTT-TATTATTATTTTATTCTAA
1 GTTATTTATATTATTATATTATTCTAA
* * *
24447355 ATTTTTTATAATTATTA-ATTATTTTAA
1 GTTATTTAT-ATTATTATATTATTCTAA
24447382 GTTATTTA
1 GTTATTTA
24447390 GGATTTTATG
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
26 5 0.19
27 15 0.56
28 7 0.26
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (27 bp):
GTTATTTATATTATTATATTATTCTAA
Found at i:24448208 original size:24 final size:24
Alignment explanation
Indices: 24448178--24448228 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
24448168 AAAAGTGATC
24448178 GAAAAAAGTACAAAAAAATAAAATAT
1 GAAAAAA--ACAAAAAAATAAAATAT
* *
24448204 GAAAAAAATAAAAAAATATAATAT
1 GAAAAAAACAAAAAAATAAAATAT
24448228 G
1 G
24448229 GGTTGAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
26 7 0.30
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.18
Consensus pattern (24 bp):
GAAAAAAACAAAAAAATAAAATAT
Found at i:24449021 original size:13 final size:14
Alignment explanation
Indices: 24449000--24449036 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
24448990 TCCAAGTAAG
24449000 ATAAAATAATTAAA
1 ATAAAATAATTAAA
*
24449014 AT-AAATAACTAAA
1 ATAAAATAATTAAA
24449027 ATAAAATAAT
1 ATAAAATAAT
24449037 AAATCAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAAAATAATTAAA
Found at i:24458790 original size:49 final size:49
Alignment explanation
Indices: 24458735--24458834 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
24458725 GTGTTATAAG
* * *
24458735 TTTATAAAGTGTTGAGCTTTTAATTCATGATATTGAACTTAATTTTAAT
1 TTTATAAAGTGTTCACCTTTTAATTCATGATATTAAACTTAATTTTAAT
* *
24458784 TTTATAAAGTGTTCCCCTTTTGATTCATGATATTAAACTTAATTTTAAT
1 TTTATAAAGTGTTCACCTTTTAATTCATGATATTAAACTTAATTTTAAT
24458833 TT
1 TT
24458835 GTTTTTTTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (49 bp):
TTTATAAAGTGTTCACCTTTTAATTCATGATATTAAACTTAATTTTAAT
Found at i:24460445 original size:16 final size:17
Alignment explanation
Indices: 24460412--24460447 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
24460402 ATATTAAGAA
24460412 TTTTATTAAATTATATAT
1 TTTTATTAAA-TATATAT
24460430 TTTTATTAAA-ATATAT
1 TTTTATTAAATATATAT
24460446 TT
1 TT
24460448 AATAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTATTAAATATATAT
Found at i:24460453 original size:120 final size:120
Alignment explanation
Indices: 24460226--24460459 Score: 432
Period size: 120 Copynumber: 1.9 Consensus size: 120
24460216 AGATTAGAAT
* *
24460226 TTATATTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGACTATTTAATATTAAGA
1 TTATATTTTATAGTATTATATATTATAATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
*
24460291 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAGA
66 ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTATTTTAGA
*
24460346 TTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
1 TTATATTTTATAGTATTATATATTATAATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
24460411 ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTAT
66 ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTAT
24460460 GTTAAAATAT
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
TTATATTTTATAGTATTATATATTATAATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTATTTTAGA
Found at i:24461230 original size:24 final size:24
Alignment explanation
Indices: 24461154--24461248 Score: 102
Period size: 24 Copynumber: 3.9 Consensus size: 24
24461144 TAAATATTAA
*
24461154 ATTA-TTATATAATTTTATTATAT
1 ATTATTTATATAATTTTATTGTAT
* * * *
24461177 ATTATATTTTTAAAATTTGTATTTTCT
1 A-T-TATTTATATAATTT-TATTGTAT
24461204 ATTATTTATATAATTTTATTGTAT
1 ATTATTTATATAATTTTATTGTAT
*
24461228 ATTATTTGTATAATTTTATTG
1 ATTATTTATATAATTTTATTG
24461249 CATTTTCCGT
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.02
24 27 0.46
25 14 0.24
26 10 0.17
27 7 0.12
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTATTTATATAATTTTATTGTAT
Found at i:24465229 original size:21 final size:21
Alignment explanation
Indices: 24465203--24465243 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24465193 ATCTGCTCAA
* *
24465203 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
24465224 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
24465244 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:24469002 original size:4 final size:4
Alignment explanation
Indices: 24468993--24469023 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
24468983 GTAAGTTGAT
24468993 ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATC
1 ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATC
24469024 AATACGGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.48, G:0.00, T:0.26
Consensus pattern (4 bp):
ATCC
Found at i:24472886 original size:20 final size:20
Alignment explanation
Indices: 24472852--24472893 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
24472842 AACTATTTAA
** *
24472852 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
24472872 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
24472892 AT
1 AT
24472894 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:24484578 original size:23 final size:21
Alignment explanation
Indices: 24484527--24484584 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
24484517 GTGGGGGTTT
*
24484527 ACACGCCCATGTGAAGGCCAC
1 ACACGCCCGTGTGAAGGCCAC
* *
24484548 ATATGCCCGTGTGAAGGCTACAC
1 ACACGCCCGTGTGAAGGC--CAC
24484571 ACACGCCCGTGTGA
1 ACACGCCCGTGTGA
24484585 GCAGTCCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 15 0.50
23 15 0.50
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGAAGGCCAC
Found at i:24485313 original size:8 final size:8
Alignment explanation
Indices: 24485302--24485353 Score: 65
Period size: 8 Copynumber: 6.9 Consensus size: 8
24485292 AAACAAACAA
24485302 ATAAATAC
1 ATAAATAC
24485310 ATAAATAC
1 ATAAATAC
24485318 ATAAATAC
1 ATAAATAC
24485326 A-AAA-A-
1 ATAAATAC
*
24485331 ATAAAAAC
1 ATAAATAC
*
24485339 AAAAATAC
1 ATAAATAC
24485347 ATAAATA
1 ATAAATA
24485354 TCTAAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
5 1 0.03
6 4 0.11
7 4 0.11
8 29 0.76
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (8 bp):
ATAAATAC
Found at i:24485332 original size:29 final size:30
Alignment explanation
Indices: 24485294--24485353 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
24485284 AGATAAACAA
* *
24485294 ACAAACAAATAAATACATAAATACATAAAT
1 ACAAACAAATAAAAACAAAAATACATAAAT
24485324 ACAAA-AAATAAAAACAAAAATACATAAAT
1 ACAAACAAATAAAAACAAAAATACATAAAT
24485353 A
1 A
24485354 TCTAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.17
Consensus pattern (30 bp):
ACAAACAAATAAAAACAAAAATACATAAAT
Found at i:24487740 original size:22 final size:22
Alignment explanation
Indices: 24487714--24487767 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
24487704 ATATTCAAAC
**
24487714 AATAACAACAAAATAGTAGTAA
1 AATAACAACAAAATAGTAACAA
* * * *
24487736 TATAATAACGAAATGGTAACAA
1 AATAACAACAAAATAGTAACAA
24487758 AATAACAACA
1 AATAACAACA
24487768 TAACAACAAC
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.11, G:0.09, T:0.19
Consensus pattern (22 bp):
AATAACAACAAAATAGTAACAA
Found at i:24487767 original size:11 final size:11
Alignment explanation
Indices: 24487753--24487786 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
24487743 ACGAAATGGT
*
24487753 AACAAAATAAC
1 AACAAAACAAC
*
24487764 AACATAACAAC
1 AACAAAACAAC
24487775 AACAAAACAAC
1 AACAAAACAAC
24487786 A
1 A
24487787 GGGGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.71, C:0.24, G:0.00, T:0.06
Consensus pattern (11 bp):
AACAAAACAAC
Found at i:24488846 original size:86 final size:86
Alignment explanation
Indices: 24488701--24488870 Score: 207
Period size: 86 Copynumber: 2.0 Consensus size: 86
24488691 CTAAAGGTTG
* * * *
24488701 GCACTTCTCCCACAAACGCCGCTAAAGATCATAACCTTTAGCGGCGCTTCTCCATCAAACGCCGC
1 GCACTTCTCCCACAAACGCCGCTAAAGACCATAACCTTTAGCAGCGCTTCTACAACAAACGCCGC
* *
24488766 TATAGATCATGACTTTTAGCA
66 TAAAGAACATGACTTTTAGCA
* *** * *
24488787 GCACTT-TCCCCACAAACGCCGCTAAAGGCCATGTTCTTTAGCAGCGCTTTTATAACAAACGCCG
1 GCACTTCT-CCCACAAACGCCGCTAAAGACCATAACCTTTAGCAGCGCTTCTACAACAAACGCCG
*
24488851 CTAAAGAACATGGCTTTTAG
65 CTAAAGAACATGACTTTTAG
24488871 TGATGCTTTT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
85 1 0.01
86 69 0.99
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (86 bp):
GCACTTCTCCCACAAACGCCGCTAAAGACCATAACCTTTAGCAGCGCTTCTACAACAAACGCCGC
TAAAGAACATGACTTTTAGCA
Found at i:24488870 original size:43 final size:43
Alignment explanation
Indices: 24488712--24488923 Score: 158
Period size: 43 Copynumber: 4.9 Consensus size: 43
24488702 CACTTCTCCC
* ** * * * *
24488712 ACAAACGCCGCTAAAGATCATAACCTTTAGCGGCGCTTCTCCA
1 ACAAACGCCGCTAAAGAACATGGCTTTTAGCAGCGCTTTTCTA
* * * * * * **
24488755 TCAAACGCCGCTATAGATCATGACTTTTAGCAGCACTTTCCCC
1 ACAAACGCCGCTAAAGAACATGGCTTTTAGCAGCGCTTTTCTA
** * *
24488798 ACAAACGCCGCTAAAGGCCAT-GTTCTTTAGCAGCGCTTTTATA
1 ACAAACGCCGCTAAAGAACATGGCT-TTTAGCAGCGCTTTTCTA
* *
24488841 ACAAACGCCGCTAAAGAACATGGCTTTTAG-TGATGCTTTTCTA
1 ACAAACGCCGCTAAAGAACATGGCTTTTAGCAG-CGCTTTTCTA
* ** * *
24488884 ACAATCGCTACTAAAGAACATGGCTTTTAACAACGCTTTT
1 ACAAACGCCGCTAAAGAACATGGCTTTTAGCAGCGCTTTT
24488924 TATCACAAAC
Statistics
Matches: 132, Mismatches: 33, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
42 2 0.02
43 128 0.97
44 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ACAAACGCCGCTAAAGAACATGGCTTTTAGCAGCGCTTTTCTA
Found at i:24489016 original size:16 final size:16
Alignment explanation
Indices: 24488997--24489030 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24488987 AAATATTAAA
*
24488997 TATTAAAATTAAAAAT
1 TATTAAAATAAAAAAT
*
24489013 TATTAATATAAAAAAT
1 TATTAAAATAAAAAAT
24489029 TA
1 TA
24489031 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:24489027 original size:23 final size:21
Alignment explanation
Indices: 24488974--24489031 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 21
24488964 CACTAACTTT
24488974 TAAAAACATTTAAAAATATTAAA
1 TAAAAA-A-TTAAAAATATTAAA
*
24488997 TATTAAAATTAAAAATTATTAATA
1 TA-AAAAATTAAAAA-TATTAA-A
24489021 TAAAAAATTAA
1 TAAAAAATTAA
24489032 TTAGTATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 7 0.23
23 17 0.57
24 6 0.20
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
TAAAAAATTAAAAATATTAAA
Found at i:24499703 original size:17 final size:17
Alignment explanation
Indices: 24499683--24499716 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
24499673 AATATTAATA
24499683 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
24499700 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
24499717 TTAATGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:24499961 original size:46 final size:44
Alignment explanation
Indices: 24499884--24499969 Score: 118
Period size: 46 Copynumber: 1.9 Consensus size: 44
24499874 TATTCCATTC
* *
24499884 AACCAAACACAAGAATACTATTACGCCTCTATTCCATTACAGCG
1 AACCAAACAAAAGAATACTATTACGCATCTATTCCATTACAGCG
* *
24499928 AACCAAACAAAAAGATTACCTATTACGTATCTATTCCATTAC
1 AACCAAAC-AAAAGAATA-CTATTACGCATCTATTCCATTAC
24499970 GCCTCTATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 8 0.22
45 7 0.19
46 21 0.58
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.26
Consensus pattern (44 bp):
AACCAAACAAAAGAATACTATTACGCATCTATTCCATTACAGCG
Found at i:24499970 original size:16 final size:15
Alignment explanation
Indices: 24499949--24500002 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 15
24499939 AAGATTACCT
24499949 ATTACGTATCTATTCC
1 ATTACGT-TCTATTCC
*
24499965 ATTACGCCTCTATTCC
1 ATTACG-TTCTATTCC
24499981 ATTACGCTTCTATTCC
1 ATTACG-TTCTATTCC
24499997 ATTACG
1 ATTACG
24500003 CCTCTATCCC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.22, C:0.30, G:0.07, T:0.41
Consensus pattern (15 bp):
ATTACGTTCTATTCC
Found at i:24499985 original size:32 final size:32
Alignment explanation
Indices: 24499949--24500015 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
24499939 AAGATTACCT
*
24499949 ATTACG-TATCTATTCCATTACGCCTCTATTCC
1 ATTACGCT-TCTATTCCATTACGCCTCTATCCC
24499981 ATTACGCTTCTATTCCATTACGCCTCTATCCC
1 ATTACGCTTCTATTCCATTACGCCTCTATCCC
24500013 ATT
1 ATT
24500016 GCAGCGAACC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
32 32 0.97
33 1 0.03
ACGTcount: A:0.21, C:0.33, G:0.06, T:0.40
Consensus pattern (32 bp):
ATTACGCTTCTATTCCATTACGCCTCTATCCC
Found at i:24500003 original size:16 final size:16
Alignment explanation
Indices: 24499957--24500015 Score: 100
Period size: 16 Copynumber: 3.7 Consensus size: 16
24499947 CTATTACGTA
24499957 TCTATTCCATTACGCC
1 TCTATTCCATTACGCC
*
24499973 TCTATTCCATTACGCT
1 TCTATTCCATTACGCC
24499989 TCTATTCCATTACGCC
1 TCTATTCCATTACGCC
*
24500005 TCTATCCCATT
1 TCTATTCCATT
24500016 GCAGCGAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.19, C:0.36, G:0.05, T:0.41
Consensus pattern (16 bp):
TCTATTCCATTACGCC
Found at i:24502450 original size:19 final size:20
Alignment explanation
Indices: 24502415--24502456 Score: 61
Period size: 18 Copynumber: 2.1 Consensus size: 20
24502405 GCGTATGTAC
24502415 ATATTTACAAACGTAAAAAAT
1 ATATTTACAAACGT-AAAAAT
24502436 ATATTT-CAAAC-TAAAAAT
1 ATATTTACAAACGTAAAAAT
24502454 ATA
1 ATA
24502457 AAAGTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 1 0.05
20 5 0.24
21 6 0.29
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (20 bp):
ATATTTACAAACGTAAAAAT
Found at i:24505233 original size:14 final size:14
Alignment explanation
Indices: 24505199--24505245 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
24505189 CTAATTAATT
*
24505199 TAAACCCTAA-ACC
1 TAAACCCTAACCCC
24505212 TAAACCCTAACCCC
1 TAAACCCTAACCCC
* *
24505226 TAACCCCTAACCCT
1 TAAACCCTAACCCC
24505240 TAAACC
1 TAAACC
24505246 TTATTTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 10 0.34
14 19 0.66
ACGTcount: A:0.38, C:0.45, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCCTAACCCC
Found at i:24505248 original size:7 final size:7
Alignment explanation
Indices: 24505199--24505245 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
24505189 CTAATTAATT
24505199 TAAACCC
1 TAAACCC
24505206 TAAA-CC
1 TAAACCC
24505212 TAAACCC
1 TAAACCC
*
24505219 TAACCCC
1 TAAACCC
*
24505226 TAACCCC
1 TAAACCC
24505233 T-AACCC
1 TAAACCC
24505239 TTAAACC
1 -TAAACC
24505246 TTATTTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 10 0.29
7 21 0.60
8 4 0.11
ACGTcount: A:0.38, C:0.45, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:24505284 original size:81 final size:84
Alignment explanation
Indices: 24505130--24505292 Score: 251
Period size: 81 Copynumber: 2.0 Consensus size: 84
24505120 CTCGACCTCT
* *
24505130 AACCTCTAACCTCTAATCCCAAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATT
1 AACCTCTAACCCCTAACCCCAAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATT
*
24505195 AATTTAAACCCTAAACCTA
66 AATCTAAACCCTAAACCTA
* * *
24505214 AACC-CTAACCCCTAACCCCTAACCCTTAAACCTTATTT-A-ATATAAATTAAAACACACTAATT
1 AACCTCTAACCCCTAACCCCAAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATT
24505276 AATCTAAACCCTAAACC
66 AATCTAAACCCTAAACC
24505293 CTAACCTGAC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 38 0.52
82 1 0.01
83 30 0.41
84 4 0.05
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (84 bp):
AACCTCTAACCCCTAACCCCAAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATT
AATCTAAACCCTAAACCTA
Found at i:24505355 original size:14 final size:14
Alignment explanation
Indices: 24505336--24505400 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
24505326 TTTAACTCTT
24505336 AACCCCTAAACCAC
1 AACCCCTAAACCAC
24505350 AACCCCTAAACCAC
1 AACCCCTAAACCAC
* * *
24505364 AACTCTTAAACCAG
1 AACCCCTAAACCAC
* * *
24505378 AATCCCTAATCCAT
1 AACCCCTAAACCAC
*
24505392 AATCCCTAA
1 AACCCCTAA
24505401 TTCCATAATC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 43 1.00
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.17
Consensus pattern (14 bp):
AACCCCTAAACCAC
Found at i:24505401 original size:14 final size:15
Alignment explanation
Indices: 24505378--24505410 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
24505368 CTTAAACCAG
24505378 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
24505392 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
24505407 AATC
1 AATC
24505411 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:24508787 original size:13 final size:13
Alignment explanation
Indices: 24508769--24508803 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
24508759 CTCAAAATTT
24508769 TCAAAAGCACTTC
1 TCAAAAGCACTTC
* *
24508782 TCAAAAGTACTTT
1 TCAAAAGCACTTC
24508795 TCAAAAGCA
1 TCAAAAGCA
24508804 ATGAAAAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:24520159 original size:19 final size:19
Alignment explanation
Indices: 24520137--24520228 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 19
24520127 TTTAGTATTA
24520137 CACCACATAATTAATAGTT
1 CACCACATAATTAATAGTT
*
24520156 CACCACATAA-TAATATTGT
1 CACCACATAATTAATAGT-T
*** * * * *
24520175 CAAGTGCATATTTAGTACTA
1 C-ACCACATAATTAATAGTT
* *
24520195 CACCATATAATTGATAGTT
1 CACCACATAATTAATAGTT
24520214 CACCACATAA-TAATA
1 CACCACATAATTAATA
24520229 TTGTCCAAGT
Statistics
Matches: 51, Mismatches: 19, Indels: 7
0.66 0.25 0.09
Matches are distributed among these distances:
18 10 0.20
19 30 0.59
20 6 0.12
21 5 0.10
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (19 bp):
CACCACATAATTAATAGTT
Found at i:24520183 original size:58 final size:59
Alignment explanation
Indices: 24520108--24520258 Score: 236
Period size: 58 Copynumber: 2.6 Consensus size: 59
24520098 TGATGACTAC
*
24520108 AATATTGTCCAAGTGCATATTTAGTATTACACCACATAATTAATAGTTCACCACATAAT
1 AATATTGTCCAAGTGCATATTTAGTACTACACCACATAATTAATAGTTCACCACATAAT
* *
24520167 AATATTGT-CAAGTGCATATTTAGTACTACACCATATAATTGATAGTTCACCACATAAT
1 AATATTGTCCAAGTGCATATTTAGTACTACACCACATAATTAATAGTTCACCACATAAT
24520225 AATATTGTCCAAGTG-A-ATTACTAGTACTACACCA
1 AATATTGTCCAAGTGCATATT--TAGTACTACACCA
24520259 TATTAAAACA
Statistics
Matches: 86, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
57 3 0.03
58 56 0.65
59 27 0.31
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (59 bp):
AATATTGTCCAAGTGCATATTTAGTACTACACCACATAATTAATAGTTCACCACATAAT
Found at i:24521213 original size:16 final size:16
Alignment explanation
Indices: 24521180--24521243 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
24521170 ATTCTACATT
*
24521180 AATAATTTACATTATC
1 AATAATTTACAATATC
24521196 AATAATTT-CAATATTC
1 AATAATTTACAATA-TC
* * *
24521212 AACAAGTTTAAAACAT-
1 AATAA-TTTACAATATC
24521228 AATAATTT-CAATATC
1 AATAATTTACAATATC
24521243 A
1 A
24521244 GTATCCAACC
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
14 4 0.11
15 8 0.22
16 18 0.49
17 4 0.11
18 3 0.08
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (16 bp):
AATAATTTACAATATC
Found at i:24522159 original size:5 final size:5
Alignment explanation
Indices: 24522149--24522186 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
24522139 TTTAAGTAAT
24522149 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT
24522187 TTAGATTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:24549799 original size:23 final size:22
Alignment explanation
Indices: 24549748--24549799 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
24549738 CCTCGTCTTT
*
24549748 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
24549770 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
24549793 TTCTTTT
1 TTCTTTT
24549800 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:24558213 original size:11 final size:10
Alignment explanation
Indices: 24558172--24558225 Score: 72
Period size: 11 Copynumber: 5.0 Consensus size: 10
24558162 AACTAAATCC
24558172 TTTCTCTCAA
1 TTTCTCTCAA
24558182 TTTCTCTCTAA
1 TTTCTCTC-AA
24558193 TATTCTCTCAA
1 T-TTCTCTCAA
24558204 TTTCCTCTCAA
1 TTT-CTCTCAA
24558215 TTTCCTCTCAA
1 TTT-CTCTCAA
24558226 ATTTTTATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.24
11 24 0.59
12 7 0.17
ACGTcount: A:0.20, C:0.31, G:0.00, T:0.48
Consensus pattern (10 bp):
TTTCTCTCAA
Found at i:24559625 original size:21 final size:20
Alignment explanation
Indices: 24559599--24559656 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
24559589 TATTTACATA
*
24559599 TACATATATATAATAAAT-CT
1 TACATATATAT-ATAAATAAT
24559619 GTACATATATATATATAATAAT
1 -TACATATATATATA-AATAAT
24559641 TACATATATATATAAA
1 TACATATATATATAAA
24559657 AATAATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
20 5 0.15
21 28 0.82
22 1 0.03
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (20 bp):
TACATATATATATAAATAAT
Found at i:24559630 original size:25 final size:21
Alignment explanation
Indices: 24559592--24559654 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 21
24559582 AACAATATAT
24559592 TTACATATACATATATATAATAAA
1 TTACATAT--ATATATATAAT-AA
24559616 TCTGTACATATATATATATAATAA
1 --T-TACATATATATATATAATAA
24559640 TTACATATATATATA
1 TTACATATATATATA
24559655 AAAATAATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
21 14 0.39
22 1 0.03
24 2 0.06
25 11 0.31
26 1 0.03
27 7 0.19
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (21 bp):
TTACATATATATATATAATAA
Found at i:24559661 original size:25 final size:26
Alignment explanation
Indices: 24559623--24559686 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
24559613 AAATCTGTAC
* *
24559623 ATATATATATATAATAATTACA-TAT
1 ATATATAAAAATAATAATTACACTAT
*
24559648 ATATATAAAAATAATGATTACACTAT
1 ATATATAAAAATAATAATTACACTAT
24559674 AT-TA-AAAAA-AATA
1 ATATATAAAAATAATA
24559687 TACGTGTCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 3 0.09
24 5 0.15
25 21 0.62
26 5 0.15
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (26 bp):
ATATATAAAAATAATAATTACACTAT
Found at i:24559978 original size:12 final size:12
Alignment explanation
Indices: 24559961--24559987 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24559951 CATCACTGTC
24559961 TTCATTGATTTG
1 TTCATTGATTTG
24559973 TTCATTGATTTG
1 TTCATTGATTTG
24559985 TTC
1 TTC
24559988 TCTGGGGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.59
Consensus pattern (12 bp):
TTCATTGATTTG
Found at i:24564877 original size:23 final size:21
Alignment explanation
Indices: 24564802--24564864 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
24564792 TATTTACATA
*
24564802 TACATATATATA-ATAAAT-CT
1 TACATATATATATA-AAATAAT
24564822 GTACATATATATATAAAATAAT
1 -TACATATATATATAAAATAAT
24564844 TACATATATATATAAAATAAT
1 TACATATATATATAAAATAAT
24564865 GATTACATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 37 0.95
22 2 0.05
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (21 bp):
TACATATATATATAAAATAAT
Found at i:24568574 original size:21 final size:21
Alignment explanation
Indices: 24568549--24568596 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
24568539 CTAACACCGA
24568549 CAACCAG-ATCCCCTACCAGAG
1 CAACCAGAATCCCC-ACCAGAG
* *
24568570 GAACCAGAATCCCCGCCAGAG
1 CAACCAGAATCCCCACCAGAG
24568591 CAACCA
1 CAACCA
24568597 CAACTCCCGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.35, C:0.42, G:0.17, T:0.06
Consensus pattern (21 bp):
CAACCAGAATCCCCACCAGAG
Done.