Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 80 of 216
Found at i:24568605 original size:21 final size:21
Alignment explanation
Indices: 24568564--24568604 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
24568554 AGATCCCCTA
* *
24568564 CCAGAGGAACCAGAATCCCCG
1 CCAGAGCAACCACAATCCCCG
24568585 CCAGAGCAACCACAACTCCC
1 CCAGAGCAACCACAA-TCCC
24568605 GTCGAAAGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.34, C:0.44, G:0.17, T:0.05
Consensus pattern (21 bp):
CCAGAGCAACCACAATCCCCG
Found at i:24568790 original size:29 final size:31
Alignment explanation
Indices: 24568724--24568785 Score: 79
Period size: 34 Copynumber: 1.9 Consensus size: 31
24568714 TATTTTGATA
*
24568724 TTATTTGATGTAATAAAATAGAAATTTATCTATT
1 TTATTTCATGTAATAAAATAGAAATTTATC---T
*
24568758 TTATTTCATGTACTAAAATAGAAATTTA
1 TTATTTCATGTAATAAAATAGAAATTTA
24568786 CTTATACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (31 bp):
TTATTTCATGTAATAAAATAGAAATTTATCT
Found at i:24572179 original size:126 final size:126
Alignment explanation
Indices: 24571954--24572359 Score: 688
Period size: 126 Copynumber: 3.2 Consensus size: 126
24571944 CAAAACATAC
** *
24571954 GCTACTGTAGCAAAAATGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
* *
24572019 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACATCTACTCAAAATTATTTTTTCAAGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAAGA
24572080 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
* * *
24572145 GCTTAAAGCGTTTTTGACACTATTTGATCGGAAACGTCTACTCGAAATTATTTTTTCACGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAAGA
* *
24572206 GCTACTGTAGTAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
24572271 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTC-AGTA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAAG-A
* *
24572332 GCTACTGTAACAAAAGTGCGTCCACGTG
1 GCTACTGTAGCAAAAGCGCGTCCACGTG
24572360 AAAACTTCTT
Statistics
Matches: 263, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
125 1 0.00
126 262 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (126 bp):
GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAAGA
Found at i:24572549 original size:96 final size:95
Alignment explanation
Indices: 24572399--24572674 Score: 297
Period size: 95 Copynumber: 2.9 Consensus size: 95
24572389 ATTAACCCTA
* * *
24572399 AACCCCAAAGCCTAATTTATTTGAGTTTTTAC-TTAAAAACCCTAAACACTAAACCCTAATCTAA
1 AACCCTAAACCCTAATTTATTTGA-TTTTT-CTTTAAAAACCCTAAACACGAAACCCTAATCTAA
**
24572463 TTTTATAAAAATTTATAATTAATTTACTCAAGT
64 TTTT-TAAAAATTTATAATTAAACTACTCAAGT
* * * *
24572496 AACCCTGAACCCTAATTTATTTGATTTTTCTTTAAAACCCCTTAACTCGAAACCCTAATCTAATT
1 AACCCTAAACCCTAATTTATTTGATTTTTCTTTAAAAACCCTAAACACGAAACCCTAATCTAATT
*** *
24572561 TTTAATTTTTTTTAATTAAACTACTCAAGT
66 TTTAAAAATTTATAATTAAACTACTCAAGT
* * ** *
24572591 AACCCTAAACCCTAATTTAATTAT-TTTTTTCTTAAAAAACAATAAACACGAAA-CCTAATCCAA
1 AACCCTAAACCCTAATTT-ATT-TGATTTTTCTTTAAAAACCCTAAACACGAAACCCTAATCTAA
* * *
24572654 ATTTGAAAATTTTATAATTAA
64 TTTTTAAAAATTTATAATTAA
24572675 TTTAATTGAC
Statistics
Matches: 149, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
95 65 0.44
96 62 0.42
97 22 0.15
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.38
Consensus pattern (95 bp):
AACCCTAAACCCTAATTTATTTGATTTTTCTTTAAAAACCCTAAACACGAAACCCTAATCTAATT
TTTAAAAATTTATAATTAAACTACTCAAGT
Found at i:24579028 original size:20 final size:21
Alignment explanation
Indices: 24578996--24579034 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
24578986 GAAGCTAGTT
24578996 GGATAGACAAACA-ATGACTG
1 GGATAGACAAACATATGACTG
24579016 GGATAGATC-AACATATGAC
1 GGATAGA-CAAACATATGAC
24579035 ATGAAGAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (21 bp):
GGATAGACAAACATATGACTG
Found at i:24581392 original size:23 final size:21
Alignment explanation
Indices: 24581351--24581393 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
24581341 TGATAAATAT
*
24581351 TTTAATGTAAAATATTATTAC
1 TTTAATGTAAAACATTATTAC
24581372 TTTAATAGTATAAACATTATTA
1 TTTAAT-GTA-AAACATTATTA
24581394 AAAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (21 bp):
TTTAATGTAAAACATTATTAC
Found at i:24583329 original size:47 final size:47
Alignment explanation
Indices: 24583259--24583351 Score: 132
Period size: 47 Copynumber: 2.0 Consensus size: 47
24583249 AGTATCAAAT
* * *
24583259 CCAATATACGTCCAATAGGAGTATGGTTATTTTCATAAGGTTTGCAC
1 CCAATATACATCCAATAGGAGTATGGTCATTTTCAGAAGGTTTGCAC
* * *
24583306 CCAATATATATCCAATAGTAGTATGGTCATTTTCAGAAGTTTTGCA
1 CCAATATACATCCAATAGGAGTATGGTCATTTTCAGAAGGTTTGCA
24583352 AATATGTAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (47 bp):
CCAATATACATCCAATAGGAGTATGGTCATTTTCAGAAGGTTTGCAC
Found at i:24587664 original size:54 final size:54
Alignment explanation
Indices: 24587586--24587701 Score: 225
Period size: 54 Copynumber: 2.2 Consensus size: 54
24587576 TTAATTCTAC
24587586 CTCAAA-TTCTTAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
1 CTCAAATTTCTTAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
24587639 CTCAAATTTCTTAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
1 CTCAAATTTCTTAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
24587693 CTCAAATTT
1 CTCAAATTT
24587702 TGATTCTCTC
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 6 0.10
54 56 0.90
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (54 bp):
CTCAAATTTCTTAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
Found at i:24587682 original size:22 final size:20
Alignment explanation
Indices: 24587639--24587682 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
24587629 TAATTTTTCA
*
24587639 CTCAAATTTCTTAAATCTCT
1 CTCAAATTTCTTAAATCCCT
*
24587659 CTCAAATTTCACTTAATTCCCT
1 CTCAAATTT--CTTAAATCCCT
24587681 CT
1 CT
24587683 TAATTTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
22 11 0.55
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (20 bp):
CTCAAATTTCTTAAATCCCT
Found at i:24587712 original size:54 final size:54
Alignment explanation
Indices: 24587586--24587714 Score: 210
Period size: 54 Copynumber: 2.4 Consensus size: 54
24587576 TTAATTCTAC
*
24587586 CTCAAA-TTCTTAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
1 CTCAAATTTCTGAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
*
24587639 CTCAAATTTCTTAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
1 CTCAAATTTCTGAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
*
24587693 CTCAAATTT-TG-ATTCTCTCTCA
1 CTCAAATTTCTGAAATCTCTCTCA
24587715 GCTCTCTCTT
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
52 10 0.14
53 7 0.10
54 56 0.77
ACGTcount: A:0.27, C:0.26, G:0.01, T:0.46
Consensus pattern (54 bp):
CTCAAATTTCTGAAATCTCTCTCAAATTTCACTTAATTCCCTCTTAATTTTTCA
Found at i:24589148 original size:20 final size:21
Alignment explanation
Indices: 24589114--24589157 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
24589104 TTAATTGATA
24589114 ATGTAATTATTTTATATATAT
1 ATGTAATTATTTTATATATAT
*
24589135 ATGTAATT-TTTTATCTATAT
1 ATGTAATTATTTTATATATAT
24589155 ATG
1 ATG
24589158 CATATATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
ATGTAATTATTTTATATATAT
Found at i:24589223 original size:26 final size:25
Alignment explanation
Indices: 24589161--24589228 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 25
24589151 ATATATGCAT
* *
24589161 ATATATTTCTATTT-TTTTTAATGA
1 ATATTTTTATATTTATTTTTAATGA
24589185 ATATTTTTCTATATTTATTTTTAAATGA
1 ATA-TTTT-TATATTTATTTTT-AATGA
24589213 ATATTTTTATATTTAT
1 ATATTTTTATATTTAT
24589229 ACGTATATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
24 3 0.08
25 3 0.08
26 15 0.39
27 9 0.24
28 8 0.21
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (25 bp):
ATATTTTTATATTTATTTTTAATGA
Found at i:24601630 original size:44 final size:44
Alignment explanation
Indices: 24601564--24602011 Score: 193
Period size: 44 Copynumber: 10.2 Consensus size: 44
24601554 ATTGCAAGTC
* * * * *
24601564 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATTACAGAT
* * ** *
24601608 CTTATCTCCCTAAGCAGTAGTGGAGCATATCG-AAGTCCCCAG-C
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAAT-TACAGAT
* * * *
24601651 CTTA--TCCCTGAGCA-CAGCGGAGCAGACACGAAGAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGA-TCGAA-AATTACAGAT
* * **
24601694 CTTATCTCCCTAAGCTGTAGTGGAGCAGATCGAAGATGGCAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATTACAGAT
* ***
24601738 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTG---AGGCCAGTAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATTACAG--AT
* ** * ** * * * *
24601781 CCTATCTCCCTAAAGTTGCAGTGGAGTGGAT-TAAAATAAAAAAAT
1 CTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAAAT-TACAGAT
** ** * ** * * *
24601826 CTTATCTCTTTGAAGTTGCAGTAAAGTAGATCG--CATT--AGGT
1 CTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAAATTACAGAT
* * * * *
24601867 CTTATCTCCCTGAGTAGCAGCGGAGCAGACCGAAGAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA-AATTACAGAT
* * ** *
24601912 TTTATCTCTCTAAGCAGTAGTGGAGCAGATCGATGATTGCAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATTACAGAT
* * * ** *
24601956 CTTATCTCCCTAAACAGTAGTGGAGCAAGATTGAAGATGGCAAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGC-AGATCGAAAATTACAGAT
24602001 CTTATCTCCCT
1 CTTATCTCCCT
24602012 GAGGTTACAG
Statistics
Matches: 299, Mismatches: 83, Indels: 43
0.70 0.20 0.10
Matches are distributed among these distances:
40 23 0.08
41 27 0.09
42 4 0.01
43 28 0.09
44 113 0.38
45 92 0.31
46 11 0.04
47 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATTACAGAT
Found at i:24602095 original size:44 final size:44
Alignment explanation
Indices: 24601998--24602118 Score: 127
Period size: 44 Copynumber: 2.8 Consensus size: 44
24601988 GAAGATGGCA
* * * *
24601998 AATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCTCTGAGGTTACAGCGGAGCAGATTAAAACCAAG
* * * *
24602042 AATCCTATCTCTTTGAGGTTACAGCGGAGCGGATTAAAACCACG
1 AATCTTATCTCTCTGAGGTTACAGCGGAGCAGATTAAAACCAAG
* * * *
24602086 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGAT
1 AATCTTATCTCTCTGAGGTTACAGCGGAGCAGAT
24602119 CGCATCTAAC
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
43 7 0.11
44 55 0.89
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCTCTGAGGTTACAGCGGAGCAGATTAAAACCAAG
Found at i:24603846 original size:21 final size:22
Alignment explanation
Indices: 24603816--24603863 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
24603806 TAAAATTAAT
24603816 TATA-ATGTAA-TTATTATCTA
1 TATATATGTAATTTATTATCTA
*
24603836 TATATATGTAATTTTTTTATCTA
1 TATATATGTAA-TTTATTATCTA
24603859 TATAT
1 TATAT
24603864 GCATATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 6 0.25
23 14 0.58
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.56
Consensus pattern (22 bp):
TATATATGTAATTTATTATCTA
Found at i:24603897 original size:15 final size:15
Alignment explanation
Indices: 24603877--24603927 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
24603867 TATATATTTC
24603877 TATTTTTTTAATGAA
1 TATTTTTTTAATGAA
* *
24603892 TATTTTTCT-AT-ATT
1 TATTTTTTTAATGA-A
*
24603906 TATTTTTTAAATGAA
1 TATTTTTTTAATGAA
24603921 TATTTTT
1 TATTTTT
24603928 ATATTTATAC
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
13 1 0.04
14 9 0.32
15 17 0.61
16 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (15 bp):
TATTTTTTTAATGAA
Found at i:24603910 original size:29 final size:27
Alignment explanation
Indices: 24603877--24603935 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 27
24603867 TATATATTTC
*
24603877 TATTTTTTTAATGAATATTTTTCTATATT
1 TATTTTTTAAATGAATA-TTTT-TATATT
24603906 TATTTTTTAAATGAATATTTTTATATT
1 TATTTTTTAAATGAATATTTTTATATT
24603933 TAT
1 TAT
24603936 ACGTATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 9 0.31
28 4 0.14
29 16 0.55
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (27 bp):
TATTTTTTAAATGAATATTTTTATATT
Found at i:24603992 original size:12 final size:12
Alignment explanation
Indices: 24603975--24604013 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
24603965 AAATATTTAC
24603975 TTATTTTTTATT
1 TTATTTTTTATT
24603987 TTA-TTTTTATT
1 TTATTTTTTATT
24603998 TT-TATTTTTATT
1 TTAT-TTTTTATT
24604010 TTAT
1 TTAT
24604014 ATATATACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 10 0.42
12 13 0.54
13 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (12 bp):
TTATTTTTTATT
Found at i:24603993 original size:11 final size:11
Alignment explanation
Indices: 24603979--24604013 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
24603969 ATTTACTTAT
24603979 TTTTTATTTTA
1 TTTTTATTTTA
24603990 TTTTTATTTTTA
1 TTTTTA-TTTTA
24604002 TTTTTATTTTA
1 TTTTTATTTTA
24604013 T
1 T
24604014 ATATATACGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:24604013 original size:5 final size:6
Alignment explanation
Indices: 24603979--24604011 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
24603969 ATTTACTTAT
24603979 TTTTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
24604012 ATATATATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:24608334 original size:13 final size:13
Alignment explanation
Indices: 24608316--24608352 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
24608306 CAACGCATAT
*
24608316 AGATTATCAGATA
1 AGATTAACAGATA
24608329 AGATTAACAGATA
1 AGATTAACAGATA
24608342 AGATTAACAGA
1 AGATTAACAGA
24608353 GATTTTCGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.51, C:0.08, G:0.16, T:0.24
Consensus pattern (13 bp):
AGATTAACAGATA
Found at i:24611134 original size:50 final size:52
Alignment explanation
Indices: 24611080--24611220 Score: 178
Period size: 56 Copynumber: 2.7 Consensus size: 52
24611070 AGGTTCCCAT
* *
24611080 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTC-ATCTC-GGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGATGCCAAC
* *
24611130 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC--AATCTC-A-GATGCCAAC
* *
24611186 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
24611221 TTACCCAAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
50 34 0.43
53 5 0.06
56 41 0.51
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (52 bp):
GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGATGCCAAC
Found at i:24617010 original size:123 final size:122
Alignment explanation
Indices: 24616663--24617033 Score: 449
Period size: 123 Copynumber: 3.0 Consensus size: 122
24616653 GCTAAAGAGT
* * ** * * *
24616663 GAGCATTAGCAGCGTTTCCTTAAAAACGCCACAAAAAATAAGTATTAGTGGCGCTTTTAGCAAAA
1 GAGCATTAGCAGCG-TTCCTTAAAATCGCCGCAAAAAATAACCATTAGTGGCGTTTTTTGAAAAA
* * * *
24616728 ACGCCGCAAAATTATAAAACCCAATGGCGTCGTTTGGTGGCCTTTCGGAGGATTTAGTG
65 ACGCCGC-AAATAATAAAAGCCAATGGCGTCGTTTGGTGACCTTTCGGGGGATTTAGTG
* * * * **
24616787 GAGCATCAGCGGCGTTACAC-TAAAATCGCCGCAAAAAA-AATCATTAGTGGCATTTTTTGGGAA
1 GAGCATTAGCAGCGTT-C-CTTAAAATCGCCGCAAAAAATAACCATTAGTGGCGTTTTTTGAAAA
* * *
24616850 AATGCCGCAAATATTAAAAGCCAATGGCGTCGTTTGGTGCCCTTTCGGGGGATTTAGTG
64 AACGCCGCAAATAATAAAAGCCAATGGCGTCGTTTGGTGACCTTTCGGGGGATTTAGTG
* *
24616909 GAGCATTAGCAGCGTTCCTTTAAAATCACTGCAAAAAATAACCATTAGTGGCGTTTTTTGAAAAA
1 GAGCATTAGCAGCGTTCC-TTAAAATCGCCGCAAAAAATAACCATTAGTGGCGTTTTTTGAAAAA
* * *
24616974 ACGCTGCAAATAATAAAAGCCAACGGCGTCGTTTGGTGACCTTTCAGGGGGAATTAGTG
65 ACGCCGCAAATAATAAAAGCCAATGGCGTCGTTTGGTGACCTTTC-GGGGGATTTAGTG
24617033 G
1 G
24617034 CATTTTTATT
Statistics
Matches: 210, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
120 1 0.00
121 1 0.00
122 76 0.36
123 89 0.42
124 42 0.20
125 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (122 bp):
GAGCATTAGCAGCGTTCCTTAAAATCGCCGCAAAAAATAACCATTAGTGGCGTTTTTTGAAAAAA
CGCCGCAAATAATAAAAGCCAATGGCGTCGTTTGGTGACCTTTCGGGGGATTTAGTG
Found at i:24617665 original size:14 final size:14
Alignment explanation
Indices: 24617623--24617665 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
24617613 GATTTAATAT
24617623 TTAGGGGTTAGG-G
1 TTAGGGGTTAGGAG
24617636 TT-GGGGTTA-GACG
1 TTAGGGGTTAGGA-G
24617649 TTAGGGGTTAGGAG
1 TTAGGGGTTAGGAG
24617663 TTA
1 TTA
24617666 AGAATTTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.04
12 7 0.27
13 5 0.19
14 11 0.42
15 2 0.08
ACGTcount: A:0.19, C:0.02, G:0.47, T:0.33
Consensus pattern (14 bp):
TTAGGGGTTAGGAG
Found at i:24618332 original size:36 final size:37
Alignment explanation
Indices: 24618292--24618363 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 37
24618282 TATGGATTTA
* *
24618292 GGGTTTGGGATATAAGGGTTAGAGGTT-AGGGGTTAT
1 GGGTTTAGGATATAAAGGTTAGAGGTTAAGGGGTTAT
*
24618328 GGGTTTAGGATTTAAAGGTTAGAGGTTAAGGGGTTA
1 GGGTTTAGGATATAAAGGTTAGAGGTTAAGGGGTTA
24618364 ATGATTTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 24 0.75
37 8 0.25
ACGTcount: A:0.25, C:0.00, G:0.42, T:0.33
Consensus pattern (37 bp):
GGGTTTAGGATATAAAGGTTAGAGGTTAAGGGGTTAT
Found at i:24619239 original size:270 final size:269
Alignment explanation
Indices: 24618707--24619388 Score: 825
Period size: 270 Copynumber: 2.5 Consensus size: 269
24618697 TAGTTAAACT
* ** * * * * *
24618707 TTTAGTGGCATTTTTTTGAAAACGCCGCAAATATTGGATGCATTAGTGGCGTTTTTACAAG-AAA
1 TTTAGTGGCGTTTTTAGGAAAACGACGAAAAT-TTGGAAGCAATAGCGGCGTTTTTAC-AGTAAA
* * ** * * * *
24618771 CGCCGCAAAAGTGTCTTAAAATTTTGAGTAAACGACGTCGTTTCTCTCTACGATTTTTAACTTAT
64 CGCCGCAAAAGGGTATTAAAATAATGAGTAAACGGCGCCGTTTCTATC-ACGATTTTTAACTTAG
* * * **
24618836 AAAAAGTTCAGAATTATTTACTTAAAATATCACCGTTTGGCTTAAAGTACGTTAAGTATTAGTGG
128 AAAAATTTTAGAATTATTTACTTAAAACATCACCGTTTGGCTTAAAGTAAATTAAGTATTAGTGG
* * * * **
24618901 CGTTTTAACATAAAACGCCAGAAACAATGCAATTTGAGAGTAGCAAAACGGCGTCGTTTCTGTTT
193 CGTTTTAACATAAAACGCCAGAAACAATGCAATTTAAGACTAACAAAACGCCGTCGTTTCCCTTT
24618966 ACAACTTTAAATA
258 ACAACTTT-AATA
*
24618979 TTT-GTGGCGTTTTT-GGCAAAAC-AC-AAGAACTTTGGAAGCAATAGCGGCGTTTGTACAGTAA
1 TTTAGTGGCGTTTTTAGG-AAAACGACGAA-AA-TTTGGAAGCAATAGCGGCGTTTTTACAGTAA
** *
24619040 ACGCCGCAAAAGGGTATTAAAATAATGTCTAAACGGCACCGTTTCTATACACGATTTTTAACTTA
63 ACGCCGCAAAAGGGTATTAAAATAATGAGTAAACGGCGCCGTTTCTAT-CACGATTTTTAACTTA
* *
24619105 GAAAAATTTTAGAATTATTTATTTAAAACATCACCGTTTGGGTTAAAGTAAATTAAGTATTAGTG
127 GAAAAATTTTAGAATTATTTACTTAAAACATCACCGTTTGGCTTAAAGTAAATTAAGTATTAGTG
* *
24619170 GCGTTTTTACATAAAACGCCAGAAATAATGCAATTTAAGACTAACAAAACGCCGTCGTTTCCCTT
192 GCGTTTTAACATAAAACGCCAGAAACAATGCAATTTAAGACTAACAAAACGCCGTCGTTTCCCTT
24619235 TACAACTTTAATA
257 TACAACTTTAATA
* * * *
24619248 TTTAGTGGCGTTTTTAGGAAAACGCCGAAAATGTGGAAGCAATAGCGGTGTTTTTACAGTAAATG
1 TTTAGTGGCGTTTTTAGGAAAACGACGAAAATTTGGAAGCAATAGCGGCGTTTTTACAGTAAACG
* * * * * * * *
24619313 CCGCAAAAGGGTATTAGAGTAATGGGTAAACGGTGCCATTTCTGTGTACGATTTTTAACTTAGGA
66 CCGCAAAAGGGTATTAAAATAATGAGTAAACGGCGCCGTTTCTAT-CACGATTTTTAACTTAGAA
24619378 AAATTTTAGAA
130 AAATTTTAGAA
24619389 ATCAAGTATT
Statistics
Matches: 351, Mismatches: 50, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
269 10 0.03
270 314 0.89
271 22 0.06
272 5 0.01
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (269 bp):
TTTAGTGGCGTTTTTAGGAAAACGACGAAAATTTGGAAGCAATAGCGGCGTTTTTACAGTAAACG
CCGCAAAAGGGTATTAAAATAATGAGTAAACGGCGCCGTTTCTATCACGATTTTTAACTTAGAAA
AATTTTAGAATTATTTACTTAAAACATCACCGTTTGGCTTAAAGTAAATTAAGTATTAGTGGCGT
TTTAACATAAAACGCCAGAAACAATGCAATTTAAGACTAACAAAACGCCGTCGTTTCCCTTTACA
ACTTTAATA
Found at i:24619569 original size:233 final size:233
Alignment explanation
Indices: 24619154--24619621 Score: 706
Period size: 233 Copynumber: 2.0 Consensus size: 233
24619144 GGGTTAAAGT
* *
24619154 AAATTAAGTATTAGTGGCGTTTTTACATAAAACGCCAGAAATAATGCAATTTAAGACTAACAAAA
1 AAATCAAGTATTAGTGGCGTTTTTACATAAAACGCCAGAAAAAATGCAATTTAAGACTAACAAAA
*
24619219 CGCCGTCGTTTCCCTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACGCCGAAAATGTGG
66 CGCCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACGCCGAAAATGTGG
* * * * * **
24619284 AAGCAATAGCGGTGTTTTTACAGTAAATGCCGCAAAAGGGTATTAGAGTAATGGGTAAACGGTGC
131 AAGCAATAGCGGCGTTTGTACAGAAAATGCCGCAAAAGGGTATTAAAGTAATGGCTAAACGACGC
** *
24619349 CA-TTTCTGTGTACGATTTTTAACTTAGGAAAATTTTAG
196 CATTTTC-GTAAACGATTTTTAACTTAGAAAAATTTTAG
* * *
24619387 AAATCAAGTATTAGTGGCGTTTTTACGTAAAATGCCAGAAAAAATGCAATTTGAGACTAACAAAA
1 AAATCAAGTATTAGTGGCGTTTTTACATAAAACGCCAGAAAAAATGCAATTTAAGACTAACAAAA
* * *
24619452 CGGCGCCG-TTCCTCTTTACAACTTTAATATTTAGTGGTGTTTTTAGGAAAACGCCGTAAATGTG
66 CGCCGCCGTTTCC-CTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACGCCGAAAATGTG
* *
24619516 TAAGCAATAGCGGCGTTTGTACCGAAAATGCCGCAAAAGGGTATTAAAGTAATGGCTAAACGACG
130 GAAGCAATAGCGGCGTTTGTACAGAAAATGCCGCAAAAGGGTATTAAAGTAATGGCTAAACGACG
*
24619581 CCGTTTTCGTAAACGATTTTTAACTTAGAAAAATTTTAG
195 CCATTTTCGTAAACGATTTTTAACTTAGAAAAATTTTAG
24619620 AA
1 AA
24619622 TTATTTATTT
Statistics
Matches: 211, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
232 4 0.02
233 203 0.96
234 4 0.02
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (233 bp):
AAATCAAGTATTAGTGGCGTTTTTACATAAAACGCCAGAAAAAATGCAATTTAAGACTAACAAAA
CGCCGCCGTTTCCCTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACGCCGAAAATGTGG
AAGCAATAGCGGCGTTTGTACAGAAAATGCCGCAAAAGGGTATTAAAGTAATGGCTAAACGACGC
CATTTTCGTAAACGATTTTTAACTTAGAAAAATTTTAG
Found at i:24619873 original size:503 final size:502
Alignment explanation
Indices: 24618889--24619877 Score: 1226
Period size: 503 Copynumber: 2.0 Consensus size: 502
24618879 AAAGTACGTT
* * *
24618889 AAGTATTAGTGGCGTTTTAACATAAAACGCCAGAAACAATGCAATTTGAGAGTAGCAAAACGGCG
1 AAGTATTAGTGGCGTTTTAACATAAAACGCCAGAAAAAATGCAATTTGAGACTAACAAAACGGCG
* * * * *
24618954 TCGTTTCTGTTTACAACTTTAAATATTTGTGGCGTTTTTGGCAAAACACAAGAACTTTGGAAGCA
66 CCGTTCCTCTTTACAACTTTAAATATTTGTGGCGTTTTTGGCAAAACACAAGAAATGTGGAAGCA
* * *
24619019 ATAGCGGCGTTTGTACAGTAAACGCCGCAAAAGGGTATTAAAATAATGTCTAAACGGCACCGTTT
131 ATAGCGGCGTTTGTACAGAAAACGCCGCAAAAGGGTATTAAAATAATGGCTAAACGACACCGTTT
* * *
24619084 CTATACACGATTTTTAACTTAGAAAAATTTTAGAATTATTTATTTAAAACATCACCGTTTGGGTT
196 CTATACACGATTTTTAACTTAGAAAAATTTTAGAATTATTTATTTAAAACATCACCATCTGGGCT
* * *
24619149 AAAGTAAATTAAGTATTAGTGGCGTTTTTACATAAAACGCCAGAAATAATGCAATTTAAGACTAA
261 AAAGTAAATTAAGTATTAGTGGCGTTTTTACATAAAACGCCACAAAAAATGCAATCTAAGACTAA
*
24619214 CAAAACGCCGTCGTTTCCCTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACGCCGAAAA
326 CAAAACGCCGTCGTTTCCCTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACACCGAAAA
* * *
24619279 TGTGGAAGCAATAGCGGTGTTTTTACAGTAAATGCCGCAAAAGGGTATTAGAGTAATGGGTAAAC
391 TGTAGAAGCAATAGCGGCGTTTTTACAG-AAATGCCGCAAAAGGGTATTAGAATAATGGGTAAAC
** ** *
24619344 GGTGCCATTTCTGTGTACGATTTTTAACTTAGGAAAATTTTAGAAATC
455 GACGCCATTTCTCCGGACGATTTTTAACTTAGGAAAATTTTAGAAATC
* * *
24619392 AAGTATTAGTGGCGTTTTTACGTAAAATGCCAGAAAAAATGCAATTTGAGACTAACAAAACGGCG
1 AAGTATTAGTGGCGTTTTAACATAAAACGCCAGAAAAAATGCAATTTGAGACTAACAAAACGGCG
* * * *
24619457 CCGTTCCTCTTTACAACTTT-AATATTTAGTGGTGTTTTTAGG-AAAACGC-CGTAAATGTGTAA
66 CCGTTCCTCTTTACAACTTTAAATATTT-GTGGCGTTTTT-GGCAAAACACAAG-AAATGTGGAA
* * * *
24619519 GCAATAGCGGCGTTTGTACCGAAAATGCCGCAAAAGGGTATTAAAGTAATGGCTAAACGACGCCG
128 GCAATAGCGGCGTTTGTACAGAAAACGCCGCAAAAGGGTATTAAAATAATGGCTAAACGACACCG
*
24619584 TTTTCGTA-A-ACGATTTTTAACTTAGAAAAATTTTAGAATTATTTATTTAAAACGTCACCATCT
193 -TTTC-TATACACGATTTTTAACTTAGAAAAATTTTAGAATTATTTATTTAAAACATCACCATCT
* * * *
24619647 -GGCTAAATTAAATTAAGTGTTAGTGGCGTTTTTACATTAAACGCCACAAAAAATGCAATCTCAG
256 GGGCTAAAGTAAATTAAGTATTAGTGGCGTTTTTACATAAAACGCCACAAAAAATGCAATCTAAG
* * ** * * * **
24619711 ACTAACAGAACGGCGTCGTTTCTGTTTACAAGTTTAATCTTTTGTGG-GATTTTGTCTGAAAACA
321 ACTAACAAAACGCCGTCGTTTCCCTTTACAACTTTAATATTTAGTGGCG-TTTT-TAGGAAAACA
* * * *
24619775 CC-AGAAATGTAGAA-TAAGTAGTGGCGTTTGTT-C-GAGAATCGCCGCAAATGTGTATTAGAAT
384 CCGA-AAATGTAGAAGCAA-TAGCGGCGTTT-TTACAGA-AAT-GCCGCAAAAGGGTATTAGAAT
** * * * * *
24619836 TTTTGTTGAACGACGCCGTTTCTCCGGACGTTTTTTAACTTA
444 AATGGGTAAACGACGCCATTTCTCCGGACGATTTTTAACTTA
24619878 TCATTTACTC
Statistics
Matches: 412, Mismatches: 62, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
501 2 0.00
502 115 0.28
503 284 0.69
504 9 0.02
505 2 0.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (502 bp):
AAGTATTAGTGGCGTTTTAACATAAAACGCCAGAAAAAATGCAATTTGAGACTAACAAAACGGCG
CCGTTCCTCTTTACAACTTTAAATATTTGTGGCGTTTTTGGCAAAACACAAGAAATGTGGAAGCA
ATAGCGGCGTTTGTACAGAAAACGCCGCAAAAGGGTATTAAAATAATGGCTAAACGACACCGTTT
CTATACACGATTTTTAACTTAGAAAAATTTTAGAATTATTTATTTAAAACATCACCATCTGGGCT
AAAGTAAATTAAGTATTAGTGGCGTTTTTACATAAAACGCCACAAAAAATGCAATCTAAGACTAA
CAAAACGCCGTCGTTTCCCTTTACAACTTTAATATTTAGTGGCGTTTTTAGGAAAACACCGAAAA
TGTAGAAGCAATAGCGGCGTTTTTACAGAAATGCCGCAAAAGGGTATTAGAATAATGGGTAAACG
ACGCCATTTCTCCGGACGATTTTTAACTTAGGAAAATTTTAGAAATC
Found at i:24620414 original size:60 final size:60
Alignment explanation
Indices: 24620342--24620465 Score: 214
Period size: 60 Copynumber: 2.1 Consensus size: 60
24620332 GCGAATTTTG
* *
24620342 TGAATTTTGGTTACAGTGTGTGAGGGATTTAGGTATAAGTTGTTTATTTAGCAGTTGCCC
1 TGAATTTTGGTTACAGTGTATGAGGGATTTAGGTATAAATTGTTTATTTAGCAGTTGCCC
*
24620402 TGAATTTTGGTTATAGTGTATGAGGGATTTAGGTATAAATTGTTTATTTAGCAGTTGCCC
1 TGAATTTTGGTTACAGTGTATGAGGGATTTAGGTATAAATTGTTTATTTAGCAGTTGCCC
24620462 -GAAT
1 TGAAT
24620466 GAATTTTGTG
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
59 4 0.07
60 57 0.93
ACGTcount: A:0.24, C:0.07, G:0.27, T:0.42
Consensus pattern (60 bp):
TGAATTTTGGTTACAGTGTATGAGGGATTTAGGTATAAATTGTTTATTTAGCAGTTGCCC
Found at i:24620480 original size:13 final size:13
Alignment explanation
Indices: 24620462--24620536 Score: 52
Period size: 13 Copynumber: 5.8 Consensus size: 13
24620452 GCAGTTGCCC
24620462 GAATGAATTTTGT
1 GAATGAATTTTGT
24620475 GAATGAATTTCTGT
1 GAATGAATTT-TGT
24620489 --ATGAGGGATTTTGT
1 GAATGA---ATTTTGT
*
24620503 G-A-G-ATTTTCT
1 GAATGAATTTTGT
* *
24620513 AAATGAATTTTTT
1 GAATGAATTTTGT
24620526 GAATGAATTTT
1 GAATGAATTTT
24620537 CTTAATTAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
10 6 0.12
11 1 0.02
12 5 0.10
13 26 0.52
14 7 0.14
15 5 0.10
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.47
Consensus pattern (13 bp):
GAATGAATTTTGT
Found at i:24620898 original size:23 final size:23
Alignment explanation
Indices: 24620846--24620898 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
24620836 GTTCATTTTT
* *
24620846 TTTGCT-TGCATTTCTTTGCTTA
1 TTTGCTCTACATTTCTTGGCTTA
24620868 TCTT-CTCTACATTTCTTGGCTTA
1 T-TTGCTCTACATTTCTTGGCTTA
24620891 TTTGCTCT
1 TTTGCTCT
24620899 CTTTTTTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.09, C:0.23, G:0.11, T:0.57
Consensus pattern (23 bp):
TTTGCTCTACATTTCTTGGCTTA
Found at i:24621976 original size:20 final size:20
Alignment explanation
Indices: 24621934--24621986 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
24621924 ACTTATTAAT
24621934 ATATATATTTT-AA-AGTTA
1 ATATATATTTTCAATAGTTA
*
24621952 ATATATATTTTCAATATTTA
1 ATATATATTTTCAATAGTTA
*
24621972 TTATAT-TTTTACAAT
1 ATATATATTTT-CAAT
24621987 TTAATTTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 11 0.37
19 6 0.20
20 13 0.43
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (20 bp):
ATATATATTTTCAATAGTTA
Found at i:24622133 original size:13 final size:13
Alignment explanation
Indices: 24622117--24622215 Score: 83
Period size: 13 Copynumber: 7.5 Consensus size: 13
24622107 TTACTAAAAT
*
24622117 TTACTTTAATATA
1 TTACTTAAATATA
*
24622130 TTACTTGAATATA
1 TTACTTAAATATA
*
24622143 TTACTTAAATAAA
1 TTACTTAAATATA
*
24622156 TTACTTAAATACA
1 TTACTTAAATATA
*
24622169 TTACTTACTAA-AAA
1 TTACTTA--AATATA
** *
24622183 TTGGTTAAATTTA
1 TTACTTAAATATA
* *
24622196 TTACTTAAAAACA
1 TTACTTAAATATA
24622209 TTACTTA
1 TTACTTA
24622216 CTAAAATTTA
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
12 2 0.03
13 58 0.84
14 7 0.10
15 2 0.03
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (13 bp):
TTACTTAAATATA
Found at i:24622248 original size:9 final size:9
Alignment explanation
Indices: 24622234--24622628 Score: 215
Period size: 9 Copynumber: 45.4 Consensus size: 9
24622224 TAAGTATATA
*
24622234 TTACATTAC
1 TTACATAAC
24622243 TTACATAAC
1 TTACATAAC
*
24622252 TTAAATAAC
1 TTACATAAC
*
24622261 TTACACAAC
1 TTACATAAC
*
24622270 TTACACAAC
1 TTACATAAC
24622279 TTACATAAC
1 TTACATAAC
*
24622288 TTACATGA-
1 TTACATAAC
24622296 -TACATAAC
1 TTACATAAC
*
24622304 TCT-GATAAC
1 T-TACATAAC
* *
24622313 TAACATTA-
1 TTACATAAC
*
24622321 -TACACAAC
1 TTACATAAC
24622329 TTACATAA-
1 TTACATAAC
* *
24622337 -GACATTAC
1 TTACATAAC
24622345 TTACATAAC
1 TTACATAAC
*
24622354 TTACATTA-
1 TTACATAAC
*
24622362 -TACACAAC
1 TTACATAAC
*
24622370 TTACATAAT
1 TTACATAAC
*** *
24622379 TTTTTTAATAT
1 TTACAT-A-AC
24622390 TATACATAAC
1 T-TACATAAC
* *
24622400 GTACATTA-
1 TTACATAAC
24622408 -TACATAAC
1 TTACATAAC
24622416 TTACATAAC
1 TTACATAAC
24622425 -T-CATAAC
1 TTACATAAC
24622432 TTACATAAC
1 TTACATAAC
*
24622441 TTA-ATTACATT
1 TTACA-TA-A-C
* **
24622452 TTGCA-CCC
1 TTACATAAC
24622460 TTTACATAAC
1 -TTACATAAC
24622470 TTACATAAC
1 TTACATAAC
*
24622479 TTACATAGC
1 TTACATAAC
*
24622488 TTACAT-TC
1 TTACATAAC
*
24622496 -TACACAAC
1 TTACATAAC
24622504 TTACATAAC
1 TTACATAAC
* *
24622513 ATACATTAC
1 TTACATAAC
**
24622522 TTTGATAAC
1 TTACATAAC
24622531 TTACATAAC
1 TTACATAAC
24622540 TTACATAAC
1 TTACATAAC
24622549 TTACATAA-
1 TTACATAAC
*
24622557 -TACACAAC
1 TTACATAAC
*
24622565 TTACATAGC
1 TTACATAAC
*
24622574 TTACTTAA-
1 TTACATAAC
24622582 -TACATAAC
1 TTACATAAC
*
24622590 TTACACAAC
1 TTACATAAC
24622599 TT--ATACAC
1 TTACATA-AC
*
24622607 GTACATAAC
1 TTACATAAC
*
24622616 TTACATAAT
1 TTACATAAC
24622625 TTAC
1 TTAC
24622629 TTAATACATA
Statistics
Matches: 288, Mismatches: 66, Indels: 64
0.69 0.16 0.15
Matches are distributed among these distances:
7 50 0.17
8 8 0.03
9 213 0.74
10 8 0.03
11 6 0.02
12 3 0.01
ACGTcount: A:0.42, C:0.22, G:0.02, T:0.34
Consensus pattern (9 bp):
TTACATAAC
Found at i:24622333 original size:41 final size:41
Alignment explanation
Indices: 24622280--24622594 Score: 134
Period size: 41 Copynumber: 7.3 Consensus size: 41
24622270 TTACACAACT
* * * *
24622280 TACATAACTTACATGATACATAACTCT-GATAACTAACATTA
1 TACACAACTTACATAAGACATAACT-TACATAACTAACATTA
* *
24622321 TACACAACTTACATAAGACATTACTTACATAACTTACATTA
1 TACACAACTTACATAAGACATAACTTACATAACTAACATTA
**** *
24622362 TACACAACTTACATAATTTTTTTAATATTATACATAACGT-ACATTA
1 TACACAACTTACATAA--GACAT-A-ACT-TACATAAC-TAACATTA
* ** *
24622408 TACATAACTTACATAACTCATAACTTACATAACTTAATTACATTT
1 TACACAACTTACATAAGACATAACTTACATAAC-T-A--ACATTA
* * * * * *
24622453 TGCAC-CCTTTACATAACTTACATAACTTACATAGCTTACATTC
1 TACACAAC-TTACATAA--GACATAACTTACATAACTAACATTA
* * ** * *
24622496 TACACAACTTACATAACATACATTACTTTGATAACTTACATAA
1 TACACAACTTACAT-A-AGACATAACTTACATAACTAACATTA
* * * * *
24622539 CTTACATAACTTACATAATACACAACTTACATAGCTTAC-TTAA
1 --TACACAACTTACATAAGACATAACTTACATAACTAACATT-A
*
24622582 TACATAACTTACA
1 TACACAACTTACA
24622595 CAACTTATAC
Statistics
Matches: 212, Mismatches: 42, Indels: 40
0.72 0.14 0.14
Matches are distributed among these distances:
40 1 0.00
41 71 0.33
42 3 0.01
43 54 0.25
44 6 0.03
45 32 0.15
46 30 0.14
47 15 0.07
ACGTcount: A:0.42, C:0.21, G:0.03, T:0.35
Consensus pattern (41 bp):
TACACAACTTACATAAGACATAACTTACATAACTAACATTA
Found at i:24622334 original size:16 final size:16
Alignment explanation
Indices: 24622310--24622375 Score: 56
Period size: 16 Copynumber: 4.6 Consensus size: 16
24622300 TAACTCTGAT
*
24622310 AACTAACATTATACAC
1 AACTTACATTATACAC
*
24622326 AACTTACA-TA-AGAC
1 AACTTACATTATACAC
*
24622340 -A-TTAC--T-TACAT
1 AACTTACATTATACAC
24622351 AACTTACATTATACAC
1 AACTTACATTATACAC
24622367 AACTTACAT
1 AACTTACAT
24622376 AATTTTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
11 3 0.08
12 5 0.13
13 5 0.13
14 3 0.08
15 3 0.08
16 20 0.51
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (16 bp):
AACTTACATTATACAC
Found at i:24622336 original size:25 final size:25
Alignment explanation
Indices: 24622271--24622336 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
24622261 TTACACAACT
*
24622271 TACACAACTTACATAACTTACATGA
1 TACACAACTTACATAACTAACATGA
* * *
24622296 TACATAACTCT-GATAACTAACATTA
1 TACACAACT-TACATAACTAACATGA
24622321 TACACAACTTACATAA
1 TACACAACTTACATAA
24622337 GACATTACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.03
25 31 0.94
26 1 0.03
ACGTcount: A:0.45, C:0.23, G:0.03, T:0.29
Consensus pattern (25 bp):
TACACAACTTACATAACTAACATGA
Found at i:24622409 original size:16 final size:16
Alignment explanation
Indices: 24622388--24622421 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
24622378 TTTTTTTAAT
24622388 ATTATACATAACGTAC
1 ATTATACATAACGTAC
*
24622404 ATTATACATAACTTAC
1 ATTATACATAACGTAC
24622420 AT
1 AT
24622422 AACTCATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (16 bp):
ATTATACATAACGTAC
Found at i:24622429 original size:16 final size:16
Alignment explanation
Indices: 24622410--24622441 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
24622400 GTACATTATA
24622410 CATAACTTACATAACT
1 CATAACTTACATAACT
24622426 CATAACTTACATAACT
1 CATAACTTACATAACT
24622442 TAATTACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (16 bp):
CATAACTTACATAACT
Found at i:24622436 original size:25 final size:27
Alignment explanation
Indices: 24622408--24622628 Score: 160
Period size: 25 Copynumber: 8.4 Consensus size: 27
24622398 ACGTACATTA
24622408 TACATAACTTACATAAC-T-CATAACT
1 TACATAACTTACATAACTTACATAACT
* * **
24622433 TACATAACTTA-ATTACATTTTGCA-CCCTT
1 TACATAACTTACA-TA-A-CTTACATAAC-T
*
24622462 TACATAACTTACATAACTTACATAGCT
1 TACATAACTTACATAACTTACATAACT
* * *
24622489 TACAT-TC-TACACAACTTACATAACA
1 TACATAACTTACATAACTTACATAACT
* **
24622514 TACATTACTTTGATAACTTACATAACT
1 TACATAACTTACATAACTTACATAACT
*
24622541 TACATAACTTACATAA--TACACAACT
1 TACATAACTTACATAACTTACATAACT
* *
24622566 TACATAGCTTACTTAA--TACATAACT
1 TACATAACTTACATAACTTACATAACT
* *
24622591 TACACAACTT--ATACACGTACATAACT
1 TACATAACTTACATA-ACTTACATAACT
*
24622617 TACATAATTTAC
1 TACATAACTTAC
24622629 TTAATACATA
Statistics
Matches: 153, Mismatches: 28, Indels: 27
0.74 0.13 0.13
Matches are distributed among these distances:
23 2 0.01
24 2 0.01
25 71 0.46
26 20 0.13
27 37 0.24
28 4 0.03
29 16 0.10
30 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.02, T:0.34
Consensus pattern (27 bp):
TACATAACTTACATAACTTACATAACT
Found at i:24622600 original size:34 final size:33
Alignment explanation
Indices: 24622234--24622624 Score: 111
Period size: 34 Copynumber: 11.8 Consensus size: 33
24622224 TAAGTATATA
* *
24622234 TTACATTACTTACATAACTTAAATAACTTACACAAC
1 TTACATAACTTACATAAC-TACATAA--TACACAAC
* * *
24622270 TTACACAACTTACATAACTTACATGATACATAAC
1 TTACATAACTTACATAAC-TACATAATACACAAC
* * * * *
24622304 TCT-GATAACTAACATTA-TACACAACTTACATAA-
1 T-TACATAACTTACATAACTACATAA--TACACAAC
* * *
24622337 -GACATTACTTACATAACTTACATTATACACAAC
1 TTACATAACTTACATAAC-TACATAATACACAAC
* *** * *
24622370 TTACATAATTTTTTTAA-T--ATTATACATAAC
1 TTACATAACTTACATAACTACATAATACACAAC
* * *
24622400 GTACATTA--TACATAACTTACATAACT-CATAAC
1 TTACATAACTTACATAAC-TACATAA-TACACAAC
** * *
24622432 TTACATAACTTA-AT---TACATTTTGCAC-CC
1 TTACATAACTTACATAACTACATAATACACAAC
* * *
24622460 TTTACATAACTTACATAACTTACATAGCT-TAC-AT
1 -TTACATAACTTACATAAC-TACATA-ATACACAAC
* * ** *
24622494 TCTACACAACTTACATAACATACATTACTTTGATAAC
1 T-TACATAACTTACATAAC-TACA-TA-ATACACAAC
24622531 TTACATAACTTACATAACTTACATAATACACAAC
1 TTACATAACTTACATAAC-TACATAATACACAAC
* *
24622565 TTACATAGCTTACTTAA-TACATAACTTACACAAC
1 TTACATAACTTACATAACTACATAA--TACACAAC
*
24622599 TT--ATACACGTACATAACTTACATAAT
1 TTACATA-ACTTACATAAC-TACATAAT
24622625 TTACTTAATA
Statistics
Matches: 262, Mismatches: 61, Indels: 67
0.67 0.16 0.17
Matches are distributed among these distances:
28 6 0.02
29 19 0.07
30 20 0.08
32 47 0.18
33 12 0.05
34 99 0.38
35 14 0.05
36 43 0.16
37 2 0.01
ACGTcount: A:0.42, C:0.22, G:0.02, T:0.34
Consensus pattern (33 bp):
TTACATAACTTACATAACTACATAATACACAAC
Found at i:24628400 original size:43 final size:43
Alignment explanation
Indices: 24628352--24628572 Score: 234
Period size: 43 Copynumber: 5.2 Consensus size: 43
24628342 CGCCAAACAA
* **
24628352 TAGCGGCGTTTTTGGAAAAAGCACCGCTAAA-AGTTATGACCTT
1 TAGCGGCGTTTTTGGGAAAAGCACCGCTAAAGA-ACATGACCTT
* * **
24628395 TAGCGGCATTTGTGGGAAAAGTGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTTTGGGAAAAGCACCGCTAAAGAACATGACCTT
* * *
24628438 TAGGGGCGATTTTGGGAAAAGCACCGCTAAAGAACATGACTTT
1 TAGCGGCGTTTTTGGGAAAAGCACCGCTAAAGAACATGACCTT
* * * *
24628481 TAGCGGCGTTTGTGGG-AAAGCGCCGCTAATGAACTTGACCTT
1 TAGCGGCGTTTTTGGGAAAAGCACCGCTAAAGAACATGACCTT
* * **
24628523 TAGCGACGTTTTTATGG--CGGCACCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTTT-GGGAAAAGCACCGCTAAAGAACATGACCTT
24628565 TAGCGGCG
1 TAGCGGCG
24628573 CTGTCAATAG
Statistics
Matches: 146, Mismatches: 30, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
42 60 0.41
43 85 0.58
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTTTGGGAAAAGCACCGCTAAAGAACATGACCTT
Found at i:24636582 original size:30 final size:30
Alignment explanation
Indices: 24636548--24636609 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
24636538 ACTTATTTTA
*
24636548 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTCGTTATTATTTTAAAGACAT
*
24636578 TTGTTAATTTCGTTATTATTTTAAAGGCAT
1 TTGTTAATTTCGTTATTATTTTAAAGACAT
24636608 TT
1 TT
24636610 TCTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTCGTTATTATTTTAAAGACAT
Found at i:24644343 original size:43 final size:43
Alignment explanation
Indices: 24644290--24644609 Score: 288
Period size: 43 Copynumber: 7.4 Consensus size: 43
24644280 TTTTAGAAAT
* * * *
24644290 AAACGCCGCTAAAGGTCATGAACTTTAGCAGCGCTTCTCCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
* * * *
24644333 AAACGTCGCTATAGATCACGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
* * * ** * * *
24644376 AAACGTCGCTATAGATCAAT-ACCCTTAGCGATGTTTTTTTCCAG
1 AAACGCCGCTAAAGATC-ATGACCTTTAGCGGCG-CTTTTCCCAC
* * * *
24644420 AAAAGCCGCTATAGATCATGACTTTTAGCGGCGCTTCTT-TCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTT-TTCCCAC
**
24644463 AAACATCGCTAAAGGA-CATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAA-GATCATGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
24644506 AAACGCCTCCAAAGAACATGACCTTTAGCAGCGCTTTCCCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
* * * *
24644549 AAACGTCGCTAAAGAACATGACCTTTAGCGGCG-TTTTCCTAA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
*
24644591 AAACGCCGCTAAAGGTCAT
1 AAACGCCGCTAAAGATCAT
24644610 AAAAATAAAA
Statistics
Matches: 224, Mismatches: 46, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
42 26 0.12
43 162 0.72
44 36 0.16
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:24645497 original size:23 final size:22
Alignment explanation
Indices: 24645471--24645744 Score: 187
Period size: 23 Copynumber: 11.9 Consensus size: 22
24645461 AATGGAAAGT
24645471 AGCACTTTAACACTTCAATTTAC
1 AGCA-TTTAACACTTCAATTTAC
**
24645494 AGCATTTAAACACTTCAATTTGT
1 AGCATTT-AACACTTCAATTTAC
*
24645517 AGCACTTTAACA-TATCAATTAAC
1 AGCA-TTTAACACT-TCAATTTAC
* * * *
24645540 AACATTTATAAACCTCAA-TAAC
1 AGCATTTA-ACACTTCAATTTAC
** *
24645562 AGCGATAAAACA-TCTCAATTTCC
1 AGC-ATTTAACACT-TCAATTTAC
* * *
24645585 AGCAACTAAACACTTCAATTTGC
1 AGC-ATTTAACACTTCAATTTAC
*
24645608 AGCACTTAAACACTTCAATTTAC
1 AGCA-TTTAACACTTCAATTTAC
**
24645631 AGCATTTAAACACTTCAATTTGTGG
1 AGCATTT-AACACTTCAA-TT-TAC
24645656 AGCACTTTAACACTTCAATTTAC
1 AGCA-TTTAACACTTCAATTTAC
* * *
24645679 AACATTTAAACACTTGAATTTGC
1 AGCATTT-AACACTTCAATTTAC
24645702 AGCACTTTAACA-TATCAATTTAC
1 AGCA-TTTAACACT-TCAATTTAC
*
24645725 AACATTTAAACACTTCAATT
1 AGCATTT-AACACTTCAATT
24645745 ACTTGTAATT
Statistics
Matches: 199, Mismatches: 33, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
22 30 0.15
23 139 0.70
24 12 0.06
25 15 0.08
26 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.32
Consensus pattern (22 bp):
AGCATTTAACACTTCAATTTAC
Found at i:24645536 original size:46 final size:46
Alignment explanation
Indices: 24645471--24645744 Score: 299
Period size: 46 Copynumber: 5.9 Consensus size: 46
24645461 AATGGAAAGT
* *
24645471 AGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGT
1 AGCACTTTAACACTTCAATTTACAACATTTAAACACTTCAATTTGC
* * **
24645517 AGCACTTTAACA-TATCAATTAACAACATTTATAA-ACCTCAA-TAAC
1 AGCACTTTAACACT-TCAATTTACAACATTTA-AACACTTCAATTTGC
** * * **
24645562 AGCGA-TAAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGC
1 AGC-ACTTTAACACT-TCAATTTACAACATTTAAACACTTCAATTTGC
* * *
24645608 AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGTGG
1 AGCACTTTAACACTTCAATTTACAACATTTAAACACTTCAA-TT-TGC
*
24645656 AGCACTTTAACACTTCAATTTACAACATTTAAACACTTGAATTTGC
1 AGCACTTTAACACTTCAATTTACAACATTTAAACACTTCAATTTGC
24645702 AGCACTTTAACA-TATCAATTTACAACATTTAAACACTTCAATT
1 AGCACTTTAACACT-TCAATTTACAACATTTAAACACTTCAATT
24645745 ACTTGTAATT
Statistics
Matches: 191, Mismatches: 27, Indels: 20
0.80 0.11 0.08
Matches are distributed among these distances:
44 2 0.01
45 31 0.16
46 111 0.58
47 7 0.04
48 40 0.21
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.32
Consensus pattern (46 bp):
AGCACTTTAACACTTCAATTTACAACATTTAAACACTTCAATTTGC
Found at i:24648811 original size:7 final size:7
Alignment explanation
Indices: 24648801--24648830 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
24648791 AAGAGAGAAA
24648801 GGGAGAG
1 GGGAGAG
24648808 GGGAGAG
1 GGGAGAG
24648815 GGGAGAG
1 GGGAGAG
*
24648822 GGGAAAG
1 GGGAGAG
24648829 GG
1 GG
24648831 TAATAGGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (7 bp):
GGGAGAG
Found at i:24648820 original size:14 final size:14
Alignment explanation
Indices: 24648797--24648830 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
24648787 AGGAAAGAGA
24648797 GAAA-GGGAGAGGG
1 GAAAGGGGAGAGGG
*
24648810 GAGAGGGGAGAGGG
1 GAAAGGGGAGAGGG
24648824 GAAAGGG
1 GAAAGGG
24648831 TAATAGGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (14 bp):
GAAAGGGGAGAGGG
Found at i:24649709 original size:7 final size:7
Alignment explanation
Indices: 24649693--24649731 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
24649683 TCTTAACCTT
*
24649693 TAACCTC
1 TAACCCC
24649700 TAACCCC
1 TAACCCC
24649707 TAACCCC
1 TAACCCC
*
24649714 AAACCCC
1 TAACCCC
24649721 TAACCCC
1 TAACCCC
24649728 TAAC
1 TAAC
24649732 TACTAGCCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.33, C:0.51, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCC
Found at i:24650065 original size:14 final size:14
Alignment explanation
Indices: 24650046--24650079 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
24650036 CTAAATTAAT
24650046 CATATACCCTAAAC
1 CATATACCCTAAAC
24650060 CATATACCCTAAAC
1 CATATACCCTAAAC
24650074 CATATA
1 CATATA
24650080 TATTAAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (14 bp):
CATATACCCTAAAC
Found at i:24650371 original size:20 final size:19
Alignment explanation
Indices: 24650338--24650383 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
24650328 ATTGAATTTT
24650338 AATT-AATATAAATAAACA
1 AATTAAATATAAATAAACA
*
24650356 AATTAAATAGTAAATAGACA
1 AATTAAATA-TAAATAAACA
*
24650376 AATAAAAT
1 AATTAAAT
24650384 GTTTTTGAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 16 0.67
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (19 bp):
AATTAAATATAAATAAACA
Found at i:24650436 original size:40 final size:41
Alignment explanation
Indices: 24650392--24650550 Score: 243
Period size: 41 Copynumber: 3.9 Consensus size: 41
24650382 ATGTTTTTGA
*
24650392 GGCGCTTTTTTAAAAACGTCGCTAAAGCCC-GAGCATTAGC
1 GGCGCTTTTTTAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* *
24650432 GGCGC-TTTTGAAAAACGCTGCTAAAG-CCTCGAGCATTAGC
1 GGCGCTTTTTTAAAAACGCCGCTAAAGCCCT-GAGCATTAGC
24650472 GGCGCTTTTTTAAAAACGCCGCTAAAGCCCTGAGCATTAGC
1 GGCGCTTTTTTAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* *
24650513 GGCGCTTTTTCAAAAACGCCGCTAAATCCCTGAGCATT
1 GGCGCTTTTTTAAAAACGCCGCTAAAGCCCTGAGCATT
24650551 TGCCGTGAAA
Statistics
Matches: 108, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
38 2 0.02
39 18 0.17
40 20 0.19
41 65 0.60
42 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (41 bp):
GGCGCTTTTTTAAAAACGCCGCTAAAGCCCTGAGCATTAGC
Found at i:24650612 original size:63 final size:63
Alignment explanation
Indices: 24650495--24650613 Score: 175
Period size: 63 Copynumber: 1.9 Consensus size: 63
24650485 AAACGCCGCT
* * * * **
24650495 AAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCTGAGCATTTGCCGTG
1 AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCCGCGAAAGCCCCAAGCATTTGCCGTG
*
24650558 AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCTGCGAAAGCCCCAAGCATT
1 AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCCGCGAAAGCCCCAAGCATT
24650614 AGCGGCACTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (63 bp):
AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCCGCGAAAGCCCCAAGCATTTGCCGTG
Found at i:24650625 original size:145 final size:143
Alignment explanation
Indices: 24650415--24650683 Score: 423
Period size: 145 Copynumber: 1.9 Consensus size: 143
24650405 AAACGTCGCT
* * * * *
24650415 AAAGCCCGAGCATTAGCGGCGCTTTTGAAAAACGCTGCTAAAGCCTCGAGCATTAGCGGCGCTTT
1 AAAGCCCGAGCATTAGCGGCGCTTTTCAAAAACGCTGCGAAAGCCCCAAGCATTAGCGGCACTTT
* * * *
24650480 TTTAAAAACGCCGCTAAAGCC-CTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCT
66 TTCAAAAACACCGCGAAAGCCTC-GAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAATCCCT
24650544 GAGCATTTGCCGTG
130 GAGCATTTGCCGTG
24650558 AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCTGCGAAAGCCCCAAGCATTAGCGGCACT
1 AAAG-CCCGAGCATTAGCGGCGC-TTTTCAAAAACGCTGCGAAAGCCCCAAGCATTAGCGGCACT
24650623 TTTTCAAAAACACCGCGAAAGCCTCGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
64 TTTTCAAAAACACCGCGAAAGCCTCGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
24650684 GCCTCGAAAG
Statistics
Matches: 114, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
143 4 0.04
144 18 0.16
145 91 0.80
146 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (143 bp):
AAAGCCCGAGCATTAGCGGCGCTTTTCAAAAACGCTGCGAAAGCCCCAAGCATTAGCGGCACTTT
TTCAAAAACACCGCGAAAGCCTCGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAATCCCTG
AGCATTTGCCGTG
Found at i:24650652 original size:104 final size:104
Alignment explanation
Indices: 24650454--24650654 Score: 287
Period size: 104 Copynumber: 1.9 Consensus size: 104
24650444 AAACGCTGCT
* * * * ** *
24650454 AAAGCCTCGAGCATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCT
1 AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCCGCGAAAGCCCCAAGCATTAGCGGCACT
* * *
24650519 TTTTCAAAAACGCCGCTAAATCCCTGAGCATTTGCCGTG
66 TTTTCAAAAACACCGCGAAAGCCCTGAGCATTTGCCGTG
*
24650558 AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCTGCGAAAGCCCCAAGCATTAGCGGCACT
1 AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCCGCGAAAGCCCCAAGCATTAGCGGCACT
24650623 TTTTCAAAAACACCGCGAAAG-CCTCGAGCATT
66 TTTTCAAAAACACCGCGAAAGCCCT-GAGCATT
24650655 AGCGGCGCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
103 3 0.04
104 82 0.96
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (104 bp):
AAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAACGCCGCGAAAGCCCCAAGCATTAGCGGCACT
TTTTCAAAAACACCGCGAAAGCCCTGAGCATTTGCCGTG
Found at i:24650690 original size:41 final size:40
Alignment explanation
Indices: 24650552--24650686 Score: 180
Period size: 41 Copynumber: 3.3 Consensus size: 40
24650542 CTGAGCATTT
*
24650552 GCCGTGAAAGCCCCGAGCATTAGCGGCGCATTTTCAAAAAC
1 GCCGCGAAAGCCCCGAGCATTAGCGGCGC-TTTTCAAAAAC
* * *
24650593 GCTGCGAAAGCCCCAAGCATTAGCGGCACTTTTTCAAAAAC
1 GCCGCGAAAGCCCCGAGCATTAGCGGCGC-TTTTCAAAAAC
* *
24650634 ACCGCGAAAGCCTCGAGCATTAGCGGCGCTTTCTCAAAAAC
1 GCCGCGAAAGCCCCGAGCATTAGCGGCGCTTT-TCAAAAAC
*
24650675 GCCGCTAAAGCC
1 GCCGCGAAAGCC
24650687 TCGAAAGGTC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 3 0.04
41 78 0.96
ACGTcount: A:0.30, C:0.31, G:0.22, T:0.17
Consensus pattern (40 bp):
GCCGCGAAAGCCCCGAGCATTAGCGGCGCTTTTCAAAAAC
Found at i:24651741 original size:22 final size:22
Alignment explanation
Indices: 24651694--24651763 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
24651684 CAATAACAAC
*
24651694 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAATAGT
* *
24651716 AAAATGGTAGCAAAATAGGTAG-
1 AAAATAGTAGCAAAATA-ATAGT
* *
24651738 AAAATAATAAG-AAAATAATATT
1 AAAATAGT-AGCAAAATAATAGT
24651760 AAAA
1 AAAA
24651764 AATAAAAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
21 2 0.05
22 31 0.82
23 5 0.13
ACGTcount: A:0.60, C:0.04, G:0.14, T:0.21
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAATAGT
Found at i:24655430 original size:3 final size:3
Alignment explanation
Indices: 24655422--24655455 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
24655412 CTAATTGCTG
24655422 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
24655456 TTCCCTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:24655729 original size:16 final size:16
Alignment explanation
Indices: 24655708--24655742 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
24655698 CTAAAAAAAG
**
24655708 CCCCAAATCGTGAAAT
1 CCCCAAATCACGAAAT
24655724 CCCCAAATCACGAAAT
1 CCCCAAATCACGAAAT
24655740 CCC
1 CCC
24655743 TAAAAACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.40, G:0.09, T:0.14
Consensus pattern (16 bp):
CCCCAAATCACGAAAT
Found at i:24655836 original size:30 final size:30
Alignment explanation
Indices: 24655800--24655859 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
24655790 TCTACTTCTT
24655800 TAATCCCTTATTCCCAAATCATGAAATCTC
1 TAATCCCTTATTCCCAAATCATGAAATCTC
* *
24655830 TAATCCCTTATTCTCAAATCGTGAAATCTC
1 TAATCCCTTATTCCCAAATCATGAAATCTC
24655860 ATAAACTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (30 bp):
TAATCCCTTATTCCCAAATCATGAAATCTC
Found at i:24664432 original size:3 final size:3
Alignment explanation
Indices: 24664424--24664455 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
24664414 TGTAGACTGC
24664424 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
24664456 GTCAATTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:24669853 original size:13 final size:12
Alignment explanation
Indices: 24669837--24669866 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
24669827 AAAATAACTA
24669837 ATATATTAATACT
1 ATATATTAAT-CT
24669850 ATATATTAATCT
1 ATATATTAATCT
24669862 ATATA
1 ATATA
24669867 AGTAGTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATATTAATCT
Found at i:24670246 original size:15 final size:14
Alignment explanation
Indices: 24670222--24670261 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 14
24670212 AAGGAGGAAT
24670222 TTTAAAATAACTAA
1 TTTAAAATAACTAA
24670236 TTTAAAGATAACTAAA
1 TTTAAA-ATAACT-AA
24670252 TTTTAAAATA
1 -TTTAAAATA
24670262 TCATATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.26
15 6 0.26
16 5 0.22
17 6 0.26
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (14 bp):
TTTAAAATAACTAA
Found at i:24671266 original size:23 final size:24
Alignment explanation
Indices: 24671206--24671272 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 24
24671196 GGGGTGGAAG
* *
24671206 GGACGTGGCGTGTATGGAGGCAGT
1 GGACGTGGCGTGTACGGAGGCAGC
**
24671230 GGGTGTGGCGTGTACGGAGGC-GC
1 GGACGTGGCGTGTACGGAGGCAGC
*
24671253 GGACGTGGCATGTACGGAGG
1 GGACGTGGCGTGTACGGAGG
24671273 TGCTCATGGC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 18 0.50
24 18 0.50
ACGTcount: A:0.15, C:0.15, G:0.52, T:0.18
Consensus pattern (24 bp):
GGACGTGGCGTGTACGGAGGCAGC
Found at i:24671490 original size:27 final size:27
Alignment explanation
Indices: 24671459--24671510 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
24671449 TTGGACTATT
24671459 TTTA-TTGGACTTTTGATTTTAATTTTA
1 TTTATTTGG-CTTTTGATTTTAATTTTA
* *
24671486 TTTATTTGGCTTTTTATTTTTATTT
1 TTTATTTGGCTTTTGATTTTAATTT
24671511 ACTTGTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.17, C:0.04, G:0.10, T:0.69
Consensus pattern (27 bp):
TTTATTTGGCTTTTGATTTTAATTTTA
Found at i:24671521 original size:22 final size:22
Alignment explanation
Indices: 24671475--24671524 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
24671465 GGACTTTTGA
* *
24671475 TTTTAATTTTATTTATTTGGCT
1 TTTTATTTTTATTTACTTGGCT
**
24671497 TTTTATTTTTATTTACTTGTTT
1 TTTTATTTTTATTTACTTGGCT
24671519 TTTTAT
1 TTTTAT
24671525 ATGCATGTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (22 bp):
TTTTATTTTTATTTACTTGGCT
Found at i:24671848 original size:50 final size:50
Alignment explanation
Indices: 24671785--24672011 Score: 152
Period size: 50 Copynumber: 4.5 Consensus size: 50
24671775 TGATGTCGGA
*
24671785 GAAGCAAGATTCGCC-ATTGTGGCTTTAATCTGTTCCACTGCACCGCCAGG
1 GAAGCAAGATTCGCCGA-TGTGGCTTTAATCTGTTCAACTGCACCGCCAGG
* * * * * * * ** * *
24671835 GAAGTAAGATTCG-CTATTATAGCTTTAATCTTTTTAACCGCAATGTCGGG
1 GAAGCAAGATTCGCCGA-TGTGGCTTTAATCTGTTCAACTGCACCGCCAGG
* ** * *
24671885 GAAGCGAGATTTACCGATGTGGCTTTAATCTTGCTCTACTGCACCGCCAGG
1 GAAGCAAGATTCGCCGATGTGGCTTTAATC-TGTTCAACTGCACCGCCAGG
* * * * * ** * *
24671936 GAAGTAGGATTCGCCGATGTGGCTTTAATCTTTTTAACTGTAATGTCGGG
1 GAAGCAAGATTCGCCGATGTGGCTTTAATCTGTTCAACTGCACCGCCAGG
* **
24671986 GAAGCGAGATTTACCGATGTGGCTTT
1 GAAGCAAGATTCGCCGATGTGGCTTT
24672012 GACCTGCTCC
Statistics
Matches: 128, Mismatches: 46, Indels: 6
0.71 0.26 0.03
Matches are distributed among these distances:
49 1 0.01
50 89 0.70
51 38 0.30
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.31
Consensus pattern (50 bp):
GAAGCAAGATTCGCCGATGTGGCTTTAATCTGTTCAACTGCACCGCCAGG
Found at i:24671965 original size:101 final size:100
Alignment explanation
Indices: 24671802--24672045 Score: 341
Period size: 101 Copynumber: 2.4 Consensus size: 100
24671792 GATTCGCCAT
* *
24671802 TGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTATTATAGCTTTAATCTT
1 TGTGGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATTCGCGATTATAGCTTTAATCTT
24671867 TTTAACCGCAATGTCGGGGAAGCGAGATTTACCGA
66 TTTAACCGCAATGTCGGGGAAGCGAGATTTACCGA
* * * *
24671902 TGTGGCTTTAATCTTGCTCTACTGCACCGCCAGGGAAGTAGGATTCGCCGA-TGTGGCTTTAATC
1 TGTGGCTTTAATC-TGCTCCACTGCACCGCCAGGGAAGTAAGATTCG-CGATTATAGCTTTAATC
* *
24671966 TTTTTAACTGTAATGTCGGGGAAGCGAGATTTACCGA
64 TTTTTAACCGCAATGTCGGGGAAGCGAGATTTACCGA
* * *
24672003 TGTGGCTTTGACCTGCTCCACTGTACCG-CAGGG-AGATAAGATT
1 TGTGGCTTTAATCTGCTCCACTGCACCGCCAGGGAAG-TAAGATT
24672046 TCTGGCTTCA
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
98 2 0.02
99 11 0.09
100 26 0.20
101 87 0.68
102 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (100 bp):
TGTGGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATTCGCGATTATAGCTTTAATCTT
TTTAACCGCAATGTCGGGGAAGCGAGATTTACCGA
Found at i:24672026 original size:50 final size:50
Alignment explanation
Indices: 24671876--24672027 Score: 135
Period size: 50 Copynumber: 3.0 Consensus size: 50
24671866 TTTTAACCGC
* * *
24671876 AATGTCGGGGAAGCGAGATTTACCGATGTGGCTTTAATCTTGCTCTACTGC
1 AATGTCGGGGAAGCGAGATTTACCGATGTGGCTTTAA-CCTGCTCAACTGT
** * * * ** * ** *
24671927 ACCGCCAGGGAAG-TAGGATTCGCCGATGTGGCTTTAATCTTTTTAACTGT
1 AATGTCGGGGAAGCGA-GATTTACCGATGTGGCTTTAACCTGCTCAACTGT
* *
24671977 AATGTCGGGGAAGCGAGATTTACCGATGTGGCTTTGACCTGCTCCACTGT
1 AATGTCGGGGAAGCGAGATTTACCGATGTGGCTTTAACCTGCTCAACTGT
24672027 A
1 A
24672028 CCGCAGGGAG
Statistics
Matches: 72, Mismatches: 27, Indels: 5
0.69 0.26 0.05
Matches are distributed among these distances:
50 43 0.60
51 29 0.40
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (50 bp):
AATGTCGGGGAAGCGAGATTTACCGATGTGGCTTTAACCTGCTCAACTGT
Found at i:24672272 original size:44 final size:44
Alignment explanation
Indices: 24672200--24672322 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 44
24672190 CCTTTATTTT
* * * * *
24672200 AATCCGCTCCATTGTAACTTCAATGAGATAGGATTATC-GGCTTC
1 AATCTGCTCCACTGTAACCTCAAGGAGATAAGATT-TCTGGCTTC
* * *
24672244 AATCTGCTCTACTGTAATCTCAAGGAGATAATATTTCTGGCTTC
1 AATCTGCTCCACTGTAACCTCAAGGAGATAAGATTTCTGGCTTC
*
24672288 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATT
1 AATCTGCTCCACTGTAACCTCAAGGAGATAAGATT
24672323 CACCATTTTC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 2 0.03
44 64 0.97
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGTAACCTCAAGGAGATAAGATTTCTGGCTTC
Found at i:24672301 original size:233 final size:233
Alignment explanation
Indices: 24672034--24672482 Score: 817
Period size: 233 Copynumber: 1.9 Consensus size: 233
24672024 TGTACCGCAG
*
24672034 GGAGATAAGATTTCTGGCTTCAATCTGTTCCACTGTAACCTCAGGGAGATAAGATTCACCATCTT
1 GGAGATAAGATTTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCACCATCTT
* *
24672099 CGATTAGGAGTTCTTCGGTCTATTTCACTGGAATCTCAGAGAGATAAGACCTGATGCGATCTACT
66 CGATTAGGAATTCTTCGGTCTATTCCACTGGAATCTCAGAGAGATAAGACCTGATGCGATCTACT
*
24672164 CTACTGTAATTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCATTGTAACTTCAATGAGAT
131 CTACTGTAATTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCATTGTAACTTCAAGGAGAT
24672229 AGGATTATCGGCTTCAATCTGCTCTACTGTAATCTCAA
196 AGGATTATCGGCTTCAATCTGCTCTACTGTAATCTCAA
* *
24672267 GGAGATAATATTTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCACCATTTT
1 GGAGATAAGATTTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCACCATCTT
* * *
24672332 CGATTAGGAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACT
66 CGATTAGGAATTCTTCGGTCTATTCCACTGGAATCTCAGAGAGATAAGACCTGATGCGATCTACT
24672397 CTACTGTAATTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCATTGTAACTTCAAGGAGAT
131 CTACTGTAATTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCATTGTAACTTCAAGGAGAT
24672462 AGGATTATCGGCTTCAATCTG
196 AGGATTATCGGCTTCAATCTG
24672483 TTTCCCTACT
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
233 207 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (233 bp):
GGAGATAAGATTTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCACCATCTT
CGATTAGGAATTCTTCGGTCTATTCCACTGGAATCTCAGAGAGATAAGACCTGATGCGATCTACT
CTACTGTAATTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCATTGTAACTTCAAGGAGAT
AGGATTATCGGCTTCAATCTGCTCTACTGTAATCTCAA
Found at i:24672531 original size:43 final size:43
Alignment explanation
Indices: 24672478--24672942 Score: 208
Period size: 43 Copynumber: 10.7 Consensus size: 43
24672468 ATCGGCTTCA
24672478 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAG
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAG
* * * ***
24672521 ATCTGCTTCCCCACTCCTGGGGAAGATAAGATCCGTAATCTTCA-
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCG-CCGCTT-AG
* * * * * * ** *
24672565 A-C-CTATCCC-ACTGCTGACCAGGG-AGATAGGACTAGTGGCTTAA
1 ATCTGTTTCCCTACTCCTG----GGGAAGATAAGATTCGCCGCTTAG
*
24672608 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAG
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAG
* ***
24672651 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATCCGTAATCTTCA-
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCG-CCGCTT-AG
* * * * * ** *
24672695 A-C-CTATCCC-ACTGCTGACCAGGG-ACATAGGACTT-GTGGCTTAA
1 ATCTGTTTCCCTACTCCTG----GGGAAGATAAGA-TTCGCCGCTTAG
* *
24672738 ATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCACCGCTTAG
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAG
* * ***
24672781 ATCTGTTTCCCTACTCCTAGGGAAGATAAGATCCGTAATCTTCA-
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCG-CCGCTT-AG
** * * * * ** *
24672825 A--AATATCCC-ACTGCTGACCAGGG-ACATAGGACTT-GTGGCTTAA
1 ATCTGTTTCCCTACTCCTG----GGGAAGATAAGA-TTCGCCGCTTAG
* *
24672868 ATATGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAG
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAG
*
24672911 ATCTGTTTCCCTAATCCTGGGGAAGATAAGAT
1 ATCTGTTTCCCTACTCCTGGGGAAGATAAGAT
24672943 CCATAATCTT
Statistics
Matches: 306, Mismatches: 79, Indels: 74
0.67 0.17 0.16
Matches are distributed among these distances:
41 17 0.06
42 30 0.10
43 177 0.58
44 36 0.12
45 29 0.09
46 17 0.06
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
ATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAG
Found at i:24672647 original size:130 final size:130
Alignment explanation
Indices: 24672471--24673384 Score: 1327
Period size: 130 Copynumber: 7.0 Consensus size: 130
24672461 TAGGATTATC
* * * *
24672471 GGCTTCAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTGCTTCCCCACT
1 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
* *
24672536 CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGT
66 CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
24672601 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
1 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
24672666 CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
66 CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
*
24672731 GGCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
1 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
* **
24672796 CCTAGGGAAGATAAGATCCGTAATCTTCAAAATATCCCACTGCTGACCAGGGACATAGGACTTGT
66 CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
* *
24672861 GGCTTAAATATGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTAAT
1 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
*
24672926 CCTGGGGAAGATAAGATCCATAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
66 CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
* * * * **
24672991 GGCTTAAATCTATTTCCTTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCT-ACTCCACTA
1 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCG-CTTAGATCTGTTTCC-CTA
* * * * * * *
24673055 TTGCTTAGGG-AGATAAGATCTGTAAT-TTCCAACCTATTCCATTGCTGGCCAGGGACATAGGAC
64 CT-CCTGGGGAAGATAAGATCCGTAATCTT-CAACCTATCCCACTGCTGACCAGGGACATAGGAC
24673118 TTGT
127 TTGT
* * *
24673122 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTG-CTCCACTA
1 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCG-CTTAGATCTGTTTCC-CTA
* ** * ** * * * *
24673186 TTGCCTACGG-AGACAAGATCTATAGT-TTCCCAACCTATTCCACTGCTGGCCAGGGATATAGGA
64 CT-CCTGGGGAAGATAAGATCCGTAATCTT--CAACCTATCCCACTGCTGACCAGGGACATAGGA
24673249 CTTGT
126 CTTGT
* *
24673254 GGCTTAAATCTGTTTCCCTACTTCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTAAT
1 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
*
24673319 CCTGGGGAAGATAAGATCCATAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
66 CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
24673384 G
1 G
24673385 ATTTGACCGA
Statistics
Matches: 721, Mismatches: 54, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
130 460 0.64
131 171 0.24
132 90 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (130 bp):
GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGTTTCCCTACT
CCTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGACATAGGACTTGT
Found at i:24674645 original size:8 final size:7
Alignment explanation
Indices: 24674625--24674673 Score: 66
Period size: 7 Copynumber: 7.0 Consensus size: 7
24674615 TTAGCCTCTC
24674625 CATTTTT
1 CATTTTT
24674632 -ACTTTTT
1 CA-TTTTT
24674639 CATTTTTT
1 CA-TTTTT
24674647 CATTTTT
1 CATTTTT
24674654 CA-TTTT
1 CATTTTT
24674660 CATTTTT
1 CATTTTT
24674667 CATTTTT
1 CATTTTT
24674674 AACTCAAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
6 7 0.18
7 23 0.61
8 8 0.21
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:24674659 original size:13 final size:13
Alignment explanation
Indices: 24674643--24674672 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
24674633 CTTTTTCATT
24674643 TTTTCATTTTTCA
1 TTTTCATTTTTCA
24674656 TTTTCATTTTTCA
1 TTTTCATTTTTCA
24674669 TTTT
1 TTTT
24674673 TAACTCAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:24676242 original size:40 final size:40
Alignment explanation
Indices: 24676166--24676256 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
24676156 TAACTCATTC
* *
24676166 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
24676206 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
*
24676246 AAGGCCTTCGG
1 AATGCCTTCGG
24676257 ACCTTAGTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
39 3 0.07
40 42 0.93
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:24684114 original size:40 final size:40
Alignment explanation
Indices: 24684038--24684181 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
24684028 TAACTCATTC
* *
24684038 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
24684078 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* ** ** *
24684118 AAGGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATATTA-AAAC-TCGCACA
*
24684159 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24684182 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.07
40 70 0.80
41 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:24685206 original size:13 final size:13
Alignment explanation
Indices: 24685188--24685212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24685178 AGGATGAGCA
24685188 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
24685201 TTTTTTTTCTTT
1 TTTTTTTTCTTT
24685213 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:24689969 original size:11 final size:11
Alignment explanation
Indices: 24689941--24689971 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
24689931 CCGATGCGAA
24689941 AAAAAAAG-AG
1 AAAAAAAGAAG
24689951 AAAAAAAGAAG
1 AAAAAAAGAAG
24689962 AAAAAAAGAA
1 AAAAAAAGAA
24689972 ATCAAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAG
Found at i:24691002 original size:23 final size:23
Alignment explanation
Indices: 24690976--24691066 Score: 119
Period size: 23 Copynumber: 4.0 Consensus size: 23
24690966 CATCACTAAT
*
24690976 TTGCACCAAAGTGCCACTGTCAA
1 TTGCACCAAAGTGCCACTTTCAA
*
24690999 TTGCACCAGAGTGCCACTTTCAA
1 TTGCACCAAAGTGCCACTTTCAA
* * **
24691022 TTGCATCGAAGTGTTACTTTCAA
1 TTGCACCAAAGTGCCACTTTCAA
*
24691045 TTGCACCGAAGTGCCACTTTCA
1 TTGCACCAAAGTGCCACTTTCA
24691067 GTTTGCGCTT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (23 bp):
TTGCACCAAAGTGCCACTTTCAA
Found at i:24693976 original size:11 final size:11
Alignment explanation
Indices: 24693954--24694010 Score: 60
Period size: 11 Copynumber: 4.8 Consensus size: 11
24693944 ATTTACTTTA
24693954 ATTAATTAAAAT
1 ATTAA-TAAAAT
24693966 ATTAATAAAATAT
1 ATTAAT-AAA-AT
24693979 ATTTAATAAAAT
1 A-TTAATAAAAT
*
24693991 ATTATTAAAAT
1 ATTAATAAAAT
*
24694002 ATTATTAAA
1 ATTAATAAA
24694011 TAATTTTATC
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
11 19 0.46
12 11 0.27
13 6 0.15
14 5 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
ATTAATAAAAT
Found at i:24693986 original size:14 final size:13
Alignment explanation
Indices: 24693954--24693998 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
24693944 ATTTACTTTA
*
24693954 ATTAATTAAA-AT
1 ATTAATAAAATAT
24693966 ATTAATAAAATAT
1 ATTAATAAAATAT
24693979 ATTTAATAAAATATT
1 A-TTAATAAAATA-T
24693994 ATTAA
1 ATTAA
24693999 AATATTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 9 0.31
13 3 0.10
14 15 0.52
15 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTAATAAAATAT
Found at i:24693990 original size:25 final size:26
Alignment explanation
Indices: 24693955--24694013 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
24693945 TTTACTTTAA
24693955 TTAATTAAAATATTAATAAAATA-TAT
1 TTAA-TAAAATATTAATAAAATATTAT
*
24693981 TTAATAAAATATTATTAAAATATTAT
1 TTAATAAAATATTAATAAAATATTAT
*
24694007 TAAATAA
1 TTAATAA
24694014 TTTTATCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 17 0.57
26 13 0.43
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TTAATAAAATATTAATAAAATATTAT
Found at i:24695376 original size:28 final size:29
Alignment explanation
Indices: 24695333--24695395 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
24695323 GGTTTCATAG
* *
24695333 TTTTAGATTAGGTTTTCTTTTTGTT-TTT
1 TTTTAGAATAGATTTTCTTTTTGTTGTTT
24695361 TTTTAGAATAGATTTTCTTTTTGTTGTTT
1 TTTTAGAATAGATTTTCTTTTTGTTGTTT
24695390 TCTTTA
1 T-TTTA
24695396 TTTTTTTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 23 0.74
29 4 0.13
30 4 0.13
ACGTcount: A:0.14, C:0.05, G:0.13, T:0.68
Consensus pattern (29 bp):
TTTTAGAATAGATTTTCTTTTTGTTGTTT
Found at i:24696675 original size:34 final size:36
Alignment explanation
Indices: 24696622--24696688 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
24696612 TAACATAATT
24696622 GATACATAACAACCATACC-ATTTTGGCCATTTAAA
1 GATACATAACAACCATACCAATTTTGGCCATTTAAA
*
24696657 GATACATTAAC-A-CATACCAATTTTGGTCATTT
1 GATACA-TAACAACCATACCAATTTTGGCCATTT
24696689 CAAAACATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 6 0.21
35 19 0.66
36 4 0.14
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (36 bp):
GATACATAACAACCATACCAATTTTGGCCATTTAAA
Found at i:24700739 original size:50 final size:52
Alignment explanation
Indices: 24700613--24700744 Score: 141
Period size: 50 Copynumber: 2.6 Consensus size: 52
24700603 ATGAACAAAT
* *
24700613 GAGTTACTTAATGCA-AGACTTAATTTAATGATGCAGACTTAAACTAACATTG
1 GAGTTACATAATGCATA-ACTTTATTTAATGATGCAGACTTAAACTAACATTG
* *
24700665 GAGTTACATAATGCATGTAA--TTATTT-ATGATGCATACTT-AACTAGCA-TG
1 GAGTTACATAATGCA--TAACTTTATTTAATGATGCAGACTTAAACTAACATTG
*
24700714 GAAGTTACATAATGCATAACTTTATTAAATG
1 G-AGTTACATAATGCATAACTTTATTTAATG
24700745 TAGAACACAC
Statistics
Matches: 68, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
48 3 0.04
49 3 0.04
50 26 0.38
51 15 0.22
52 19 0.28
54 1 0.01
55 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (52 bp):
GAGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATTG
Found at i:24704271 original size:17 final size:15
Alignment explanation
Indices: 24704249--24704292 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
24704239 GGGTGTTTTG
24704249 ATAAATTAAAATAGTT
1 ATAAATTAAAATA-TT
24704265 AATAAATTAATAATATT
1 -ATAAATTAA-AATATT
*
24704282 ATAAGTTAAAA
1 ATAAATTAAAA
24704293 ACATAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 2 0.08
16 8 0.32
17 11 0.44
18 4 0.16
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (15 bp):
ATAAATTAAAATATT
Found at i:24705347 original size:20 final size:20
Alignment explanation
Indices: 24705245--24705395 Score: 87
Period size: 20 Copynumber: 7.6 Consensus size: 20
24705235 TGCTTTCGTA
*
24705245 CTCCTGTTAGCATTACGATG
1 CTCCTGTTAGCACTACGATG
*
24705265 CT-CTTTTAGCACTAC-AGTG
1 CTCCTGTTAGCACTACGA-TG
* *
24705284 CTCTTGATAGCAC-ACTTG-TG
1 CTCCTGTTAGCACTAC--GATG
* * * * * *
24705304 CTACTGTTGGAACTATGGTT
1 CTCCTGTTAGCACTACGATG
*
24705324 CTCCTGTTACCACTACGATG
1 CTCCTGTTAGCACTACGATG
**
24705344 CTCCTACTAGCACTAC-AGTG
1 CTCCTGTTAGCACTACGA-TG
* *
24705364 CTGCTGTTAGCACTACGGTG
1 CTCCTGTTAGCACTACGATG
*
24705384 CTCCTGATAGCA
1 CTCCTGTTAGCA
24705396 TATTTATGCT
Statistics
Matches: 94, Mismatches: 28, Indels: 18
0.67 0.20 0.13
Matches are distributed among these distances:
18 1 0.01
19 19 0.20
20 73 0.78
21 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (20 bp):
CTCCTGTTAGCACTACGATG
Found at i:24705494 original size:20 final size:19
Alignment explanation
Indices: 24705431--24705495 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
24705421 ATGTCCTGAC
24705431 TGCACATTT-GTGCCA-GTTA
1 TGCAC-TTTGGTGCCATG-TA
* * *
24705450 TGCACTCTGGTGCCTTGTT
1 TGCACTTTGGTGCCATGTA
24705469 TGCACTTTGGTGCTCATGTA
1 TGCACTTTGGTGC-CATGTA
24705489 TGCACTT
1 TGCACTT
24705496 CCATGCCTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
18 2 0.05
19 23 0.62
20 12 0.32
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (19 bp):
TGCACTTTGGTGCCATGTA
Found at i:24705797 original size:60 final size:60
Alignment explanation
Indices: 24705683--24705815 Score: 160
Period size: 60 Copynumber: 2.2 Consensus size: 60
24705673 CTGTTAACAT
* * *
24705683 TACGGTGCTCCTGTTAGCACTACAGTGCTCTTAATAGCACACTCATGCTACTGTTGGAAC
1 TACGGTGCTCCTGTTACCACTACAGTGCTCCTAATAGCACACTCATGCTACTGTTAGAAC
* * * * * * *
24705743 TATGGTTCTCCTGTTACCACTACGGTGCTCCTACTAGCAC-TTCAGTGCTCCTGTTAGCAC
1 TACGGTGCTCCTGTTACCACTACAGTGCTCCTAATAGCACACTCA-TGCTACTGTTAGAAC
24705803 TACGGTGCTCCTG
1 TACGGTGCTCCTG
24705816 ATAGCATATT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 3 0.05
60 57 0.95
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (60 bp):
TACGGTGCTCCTGTTACCACTACAGTGCTCCTAATAGCACACTCATGCTACTGTTAGAAC
Found at i:24705820 original size:20 final size:20
Alignment explanation
Indices: 24705670--24705821 Score: 117
Period size: 20 Copynumber: 7.6 Consensus size: 20
24705660 TGCTTTCGTA
* *
24705670 CTCCTGTTAACATTACGGTG
1 CTCCTGTTAGCACTACGGTG
*
24705690 CTCCTGTTAGCACTACAGTG
1 CTCCTGTTAGCACTACGGTG
* ** **
24705710 CTCTTAATAGCAC-ACTCATG
1 CTCCTGTTAGCACTAC-GGTG
* * * * *
24705730 CTACTGTTGGAACTATGGTT
1 CTCCTGTTAGCACTACGGTG
*
24705750 CTCCTGTTACCACTACGGTG
1 CTCCTGTTAGCACTACGGTG
** * *
24705770 CTCCTACTAGCACTTCAGTG
1 CTCCTGTTAGCACTACGGTG
24705790 CTCCTGTTAGCACTACGGTG
1 CTCCTGTTAGCACTACGGTG
*
24705810 CTCCTGATAGCA
1 CTCCTGTTAGCA
24705822 TATTTATACT
Statistics
Matches: 96, Mismatches: 34, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
19 2 0.02
20 93 0.97
21 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32
Consensus pattern (20 bp):
CTCCTGTTAGCACTACGGTG
Found at i:24709312 original size:21 final size:21
Alignment explanation
Indices: 24709288--24709328 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24709278 CCATTTTAGG
*
24709288 ATTTTAAATTAGTTCTATTTT
1 ATTTTAAAATAGTTCTATTTT
*
24709309 ATTTTAAAATAGTTTTATTT
1 ATTTTAAAATAGTTCTATTT
24709329 CTTGTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
ATTTTAAAATAGTTCTATTTT
Found at i:24717210 original size:17 final size:17
Alignment explanation
Indices: 24717188--24717237 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
24717178 TCTCATATTT
24717188 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
**
24717205 TGATACTTATATCTTTC
1 TGATACCCATATCTTTC
24717222 TGATACCCATATCTTT
1 TGATACCCATATCTTT
24717238 GACTTTCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.46
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:24720778 original size:17 final size:17
Alignment explanation
Indices: 24720756--24720805 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
24720746 TCTCAGATTT
24720756 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
24720773 TGATACCTATATCTTTC
1 TGATACCCATATCTTTC
*
24720790 TGATACCCACATCTTT
1 TGATACCCATATCTTT
24720806 GACTTTCTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.24, C:0.28, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:24723997 original size:6 final size:6
Alignment explanation
Indices: 24723986--24724036 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
24723976 TCTTAGGAAA
* *
24723986 TTTATG TTTATG TTTATG TTTAGG TTTACTG -TTAT- TTTAGTT TTTATG
1 TTTATG TTTATG TTTATG TTTATG TTTA-TG TTTATG TTTA-TG TTTATG
24724034 TTT
1 TTT
24724037 TATTTTTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 4 0.11
6 29 0.76
7 5 0.13
ACGTcount: A:0.16, C:0.02, G:0.16, T:0.67
Consensus pattern (6 bp):
TTTATG
Found at i:24724012 original size:18 final size:17
Alignment explanation
Indices: 24723986--24724042 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
24723976 TCTTAGGAAA
*
24723986 TTTATGTTTATGTTTAT
1 TTTAGGTTTATGTTTAT
24724003 GTTTAGGTTTACTG-TTAT
1 -TTTAGGTTTA-TGTTTAT
*
24724021 TTTAGTTTTTATGTTTTAT
1 TTTAG-GTTTATG-TTTAT
24724040 TTT
1 TTT
24724043 TCTTGTCGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 7 0.21
18 17 0.52
19 9 0.27
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.68
Consensus pattern (17 bp):
TTTAGGTTTATGTTTAT
Found at i:24728429 original size:50 final size:50
Alignment explanation
Indices: 24728304--24728480 Score: 192
Period size: 50 Copynumber: 3.4 Consensus size: 50
24728294 ATTTGGGTAA
* * *
24728304 AGAGATCCCATCTAAGACCATGTCTGGGACATGGAATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCA-C--CGAG---ATG
* **
24728360 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCACCGAGATG
* * *
24728410 AGAGGTCCCTTGTAAGACCATGTCTGGGACATGGAATGGGTACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCACCGAGATG
* **
24728460 ACAACTCCCATGTAAGACCAT
1 AGAGGTCCCATGTAAGACCAT
24728481 ATTTGGGATA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
50 64 0.60
53 3 0.03
55 1 0.01
56 38 0.36
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCACCGAGATG
Found at i:24732172 original size:51 final size:49
Alignment explanation
Indices: 24732007--24732193 Score: 187
Period size: 51 Copynumber: 3.7 Consensus size: 49
24731997 AGTGAAAGTG
* *
24732007 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-GAATGGT
* ** ** * *
24732058 A-GGTCTCATGTGTAGTACTATGTATAGGCTACTATATGTACCAGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACGA-ATGGT
* * * * *
24732107 TTCGATAACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATTGAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CGAATGGT
24732158 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
24732194 TGTGAACCGA
Statistics
Matches: 108, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
48 1 0.01
49 5 0.05
50 34 0.31
51 66 0.61
52 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (49 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACGAATGGT
Found at i:24732197 original size:26 final size:26
Alignment explanation
Indices: 24732117--24732197 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
24732107 TTCGATAACG
24732117 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
24732143 CGTGTATTGA--ATG-GTAATGG-TCAC-A
1 TGTGTAGT-ACTATGTG-CA-GGCT-ACTA
24732168 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
24732194 TGTG
1 TGTG
24732198 AACCGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:24736111 original size:57 final size:57
Alignment explanation
Indices: 24736018--24736131 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
24736008 CGACGCACGA
24736018 CTTAAAGTTGGCTGCCATTGTATTTGCGTTGAAGATCTGGAGACATTACTCGTACAG
1 CTTAAAGTTGGCTGCCATTGTATTTGCGTTGAAGATCTGGAGACATTACTCGTACAG
*
24736075 CTTAGAGTTGGCTGCCATTGTATTTGCGTTGAAGATCTGGAGACATTACTCGTACAG
1 CTTAAAGTTGGCTGCCATTGTATTTGCGTTGAAGATCTGGAGACATTACTCGTACAG
24736132 TGAGAAGTGC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (57 bp):
CTTAAAGTTGGCTGCCATTGTATTTGCGTTGAAGATCTGGAGACATTACTCGTACAG
Found at i:24740955 original size:50 final size:50
Alignment explanation
Indices: 24740853--24741094 Score: 191
Period size: 50 Copynumber: 4.7 Consensus size: 50
24740843 GGTAAATAGA
*
24740853 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
*
24740909 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
24740959 TCCCCCGTAAGACCTTGTCTGGGACATGGCATCGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * * * * * * * * **
24741009 TTCCATGCAAGACCATATCTAGGATATGACATTTGTA--GTACAAGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
* *
24741058 TCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24741095 TGTTATTATC
Statistics
Matches: 148, Mismatches: 37, Indels: 9
0.76 0.19 0.05
Matches are distributed among these distances:
48 1 0.01
49 32 0.22
50 75 0.51
53 3 0.02
55 1 0.01
56 36 0.24
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:24745983 original size:22 final size:23
Alignment explanation
Indices: 24745931--24745983 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
24745921 TTTGAAATGT
*
24745931 TTAGAAACTAAATAATTGAAACAA
1 TTAGAAA-TAAATAATTGAAAAAA
* *
24745955 -CATAAATAAATAATT-AAAAAA
1 TTAGAAATAAATAATTGAAAAAA
24745976 TTAGAAAT
1 TTAGAAAT
24745984 TGAATTAGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
21 5 0.22
22 14 0.61
23 4 0.17
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (23 bp):
TTAGAAATAAATAATTGAAAAAA
Found at i:24753257 original size:22 final size:21
Alignment explanation
Indices: 24753232--24753274 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
24753222 TAAGTAGTAC
*
24753232 TCTGTTATGCATATTTGATTAT
1 TCTGTTATACATATTTG-TTAT
*
24753254 TCTGTTATATATATTTGTTAT
1 TCTGTTATACATATTTGTTAT
24753275 CTATATGCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.23, C:0.07, G:0.12, T:0.58
Consensus pattern (21 bp):
TCTGTTATACATATTTGTTAT
Found at i:24756509 original size:23 final size:23
Alignment explanation
Indices: 24756483--24756529 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
24756473 ACAATTATGG
24756483 TCATGCTATGTTAATAATTTAGT
1 TCATGCTATGTTAATAATTTAGT
24756506 TCATGCTATGTTAATAATTTAGT
1 TCATGCTATGTTAATAATTTAGT
24756529 T
1 T
24756530 AAGATTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.49
Consensus pattern (23 bp):
TCATGCTATGTTAATAATTTAGT
Found at i:24757838 original size:25 final size:25
Alignment explanation
Indices: 24757797--24757857 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
24757787 TTATAACACA
*
24757797 GGGCATAACATTCATTTTACCACATGG
1 GGGCAT-A-ATTCATTTTACCACATAG
24757824 GGGCATAATTCATTTTACCACATAG
1 GGGCATAATTCATTTTACCACATAG
24757849 GGGCATAAT
1 GGGCATAAT
24757858 AGTCATTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
25 26 0.79
26 1 0.03
27 6 0.18
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
GGGCATAATTCATTTTACCACATAG
Found at i:24763872 original size:29 final size:29
Alignment explanation
Indices: 24763825--24763887 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
24763815 AATTCACGAA
*
24763825 AACTCAGTAATTTGCTAACTTATGTGCAT
1 AACTCAGTAATTTGCTAACTTATGAGCAT
24763854 AACTCAGTAATTT-CTTAACTTATGAGCAT
1 AACTCAGTAATTTGC-TAACTTATGAGCAT
24763883 -ACTCA
1 AACTCA
24763888 CCTATCAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (29 bp):
AACTCAGTAATTTGCTAACTTATGAGCAT
Found at i:24763935 original size:13 final size:13
Alignment explanation
Indices: 24763919--24763946 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
24763909 CTTGACTATA
24763919 TCTCTATGTCAAT
1 TCTCTATGTCAAT
24763932 TCTCTATGTCAAT
1 TCTCTATGTCAAT
24763945 TC
1 TC
24763947 AACCGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.07, T:0.46
Consensus pattern (13 bp):
TCTCTATGTCAAT
Found at i:24765133 original size:21 final size:22
Alignment explanation
Indices: 24765103--24765147 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
24765093 TATTTAACCC
*
24765103 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
24765124 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
24765146 AA
1 AA
24765148 TACTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:24767307 original size:3 final size:3
Alignment explanation
Indices: 24767299--24767330 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
24767289 CTCTGTGGGA
24767299 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
24767331 GTTGCTGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:24769091 original size:30 final size:29
Alignment explanation
Indices: 24769034--24769092 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
24769024 TGCCTTTGAA
*
24769034 AATATTTACAAAAAGAAACATCTAATTTTT
1 AATATTTACAAAAAGAAACA-CAAATTTTT
24769064 AATATTTACAAAAAGAGCAAC-CAAATTTT
1 AATATTTACAAAAAGA--AACACAAATTTT
24769093 GAAAATAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 23 0.88
32 3 0.12
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (29 bp):
AATATTTACAAAAAGAAACACAAATTTTT
Found at i:24769422 original size:15 final size:15
Alignment explanation
Indices: 24769399--24769438 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
24769389 AATGAACGAG
*
24769399 ATTTAATCCCGTTCA
1 ATTTTATCCCGTTCA
24769414 ATTTTATCCCGTTCA
1 ATTTTATCCCGTTCA
24769429 ATTTTATCCC
1 ATTTTATCCC
24769439 CCAATAATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.05, T:0.45
Consensus pattern (15 bp):
ATTTTATCCCGTTCA
Found at i:24778447 original size:18 final size:19
Alignment explanation
Indices: 24778425--24778465 Score: 68
Period size: 17 Copynumber: 2.3 Consensus size: 19
24778415 ATAATAAATT
24778425 TATATTTAAAATTTTAAAA
1 TATATTTAAAATTTTAAAA
24778444 -ATA-TTAAAATTTTAAAA
1 TATATTTAAAATTTTAAAA
24778461 TATAT
1 TATAT
24778466 CAAATATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TATATTTAAAATTTTAAAA
Found at i:24778546 original size:16 final size:16
Alignment explanation
Indices: 24778522--24778554 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24778512 TTATATTTAA
24778522 TAATATAAATTATTAT
1 TAATATAAATTATTAT
*
24778538 TAATCTAAATTATTAT
1 TAATATAAATTATTAT
24778554 T
1 T
24778555 TTAATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATAAATTATTAT
Found at i:24783154 original size:49 final size:47
Alignment explanation
Indices: 24783063--24783574 Score: 774
Period size: 47 Copynumber: 10.7 Consensus size: 47
24783053 TTAGGATTCT
* * *
24783063 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
24783110 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
24783159 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
24783208 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
24783255 ATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGTGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA---TGGCCG
* *
24783305 ATGTGATGAACGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
24783352 ATGTGATGAACGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
24783399 ATGTGATGAACGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24783446 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
24783493 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
24783540 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24783575 TCCCGAAGGG
Statistics
Matches: 440, Mismatches: 19, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 300 0.68
49 94 0.21
50 45 0.10
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:24783333 original size:25 final size:25
Alignment explanation
Indices: 24783305--24783430 Score: 84
Period size: 25 Copynumber: 5.3 Consensus size: 25
24783295 ATGGTGGCCG
24783305 ATGTGATGAACGTGAAAGTGTGTAT
1 ATGTGATGAACGTGAAAGTGTGTAT
* *** ***
24783330 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAACGTGAAAGTGTGTAT
24783352 ATGTGATGAACGTGAAAGTGTGTAT
1 ATGTGATGAACGTGAAAGTGTGTAT
* *** ***
24783377 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAACGTGAAAGTGTGTAT
24783399 ATGTGATGAACGTGAAAGTGTGTAT
1 ATGTGATGAACGTGAAAGTGTGTAT
24783424 ATGTGAT
1 ATGTGAT
24783431 AAGGCCTAAT
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 16 0.24
23 14 0.21
24 14 0.21
25 23 0.34
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (25 bp):
ATGTGATGAACGTGAAAGTGTGTAT
Found at i:24783358 original size:22 final size:22
Alignment explanation
Indices: 24783330--24783452 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
24783320 AAGTGTGTAT
24783330 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
24783352 ATGTGATGAACGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
24783377 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
24783399 ATGTGATGAACGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
24783424 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
24783446 ATGTGAT
1 ATGTGAT
24783453 GAATGTGAAA
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 23 0.34
23 14 0.21
24 14 0.21
25 16 0.24
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:24783749 original size:37 final size:37
Alignment explanation
Indices: 24783693--24783771 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
24783683 CCGAGCCCTA
* * * *
24783693 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
*
24783730 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
24783767 AAGAC
1 AAGAC
24783772 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:24784662 original size:10 final size:9
Alignment explanation
Indices: 24784623--24784738 Score: 60
Period size: 9 Copynumber: 12.6 Consensus size: 9
24784613 CATGTAGTAA
24784623 AAAAATTAT
1 AAAAATTAT
24784632 AAAAA--AT
1 AAAAATTAT
*
24784639 AAAAATCAAT
1 AAAAAT-TAT
*
24784649 AAAAGTTAT
1 AAAAATTAT
24784658 AAAAATTATT
1 AAAAATTA-T
**
24784668 AAACTTTAAT
1 AAAAATT-AT
24784678 AAAAA-TAT
1 AAAAATTAT
*
24784686 AAAAAATATTT
1 -AAAAAT-TAT
*
24784697 AAAATTTATT
1 AAAAATTA-T
*
24784707 AAAAA-TAGA
1 AAAAATTA-T
*
24784716 AAAAATCAT
1 AAAAATTAT
*
24784725 AAAAATCAT
1 AAAAATTAT
24784734 AAAAA
1 AAAAA
24784739 CAAATTATAA
Statistics
Matches: 82, Mismatches: 15, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
7 7 0.09
8 2 0.02
9 42 0.51
10 28 0.34
11 3 0.04
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:24784670 original size:19 final size:19
Alignment explanation
Indices: 24784623--24784738 Score: 64
Period size: 19 Copynumber: 6.3 Consensus size: 19
24784613 CATGTAGTAA
24784623 AAAAATTA-TAAAAA--AT
1 AAAAATTATTAAAAATTAT
* * *
24784639 AAAAATCAATAAAAGTTAT
1 AAAAATTATTAAAAATTAT
**
24784658 AAAAATTATTAAACTTTAAT
1 AAAAATTATTAAAAATT-AT
* *
24784678 AAAAA-TATAAAAAATATTT
1 AAAAATTATTAAAAAT-TAT
* *
24784697 AAAATTTATTAAAAA-TAGA
1 AAAAATTATTAAAAATTA-T
* *
24784716 AAAAATCA-TAAAAATCAT
1 AAAAATTATTAAAAATTAT
24784734 AAAAA
1 AAAAA
24784739 CAAATTATAA
Statistics
Matches: 74, Mismatches: 18, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
16 7 0.09
17 5 0.07
18 12 0.16
19 34 0.46
20 16 0.22
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAAATTATTAAAAATTAT
Found at i:24784679 original size:29 final size:29
Alignment explanation
Indices: 24784646--24784721 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
24784636 AATAAAAATC
* * *
24784646 AATAAAAGTTATAAAAATTA-TTAAACTTT
1 AATAAAA-ATATAAAAAATATTTAAAATTT
24784675 AATAAAAATATAAAAAATATTTAAAATTT
1 AATAAAAATATAAAAAATATTTAAAATTT
* *
24784704 ATTAAAAATAGAAAAAAT
1 AATAAAAATATAAAAAAT
24784722 CATAAAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 10 0.24
29 31 0.76
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (29 bp):
AATAAAAATATAAAAAATATTTAAAATTT
Done.