Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 82 of 216
Found at i:25095154 original size:54 final size:54
Alignment explanation
Indices: 25095072--25095434 Score: 370
Period size: 54 Copynumber: 6.7 Consensus size: 54
25095062 AATGGGCCTC
* * * *
25095072 TAAAATTACCGAAATACCCTCAACGGGTAAAATTACCAAAATACCCTTGATGGG
1 TAAAATTACCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGG
* *
25095126 TAAAATTATCGAAATACCCTCGATGGGTAAAATTACTGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGG
* * ** *
25095180 TAAAATTACCAAAATACCCTC-ATCGGGTAAAATAACTAAAATACCCTCGATCGG
1 TAAAATTACCGAAATACCCTCGAT-GGGTAAAATTACCGAAATACCCTCGATGGG
* ** * * * **
25095234 TAAAATAATTGAAATACCCGCGAAGGGTAAAATTATCGAAATACCCTTAATGGG
1 TAAAATTACCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGG
* * * * * ***
25095288 TAAAATTATCGAAATACCCCCGATGGGTAAAAATTACTGAAATACCTTTGACAAG
1 TAAAATTACCGAAATACCCTCGATGGGT-AAAATTACCGAAATACCCTCGATGGG
* * * *
25095343 TAAAATTACCGAAATACCCCCGAAGGGTAAAATGACCGAAAGACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGG
* * * *
25095397 CAAAATTACTGAAATACCCT-TATAGGGTAAAATGACCG
1 TAAAATTACCGAAATACCCTCGAT-GGGTAAAATTACCG
25095435 TTATACCCCT
Statistics
Matches: 255, Mismatches: 50, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
53 3 0.01
54 206 0.81
55 46 0.18
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.23
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGG
Found at i:25095208 original size:81 final size:81
Alignment explanation
Indices: 25095072--25095416 Score: 399
Period size: 81 Copynumber: 4.2 Consensus size: 81
25095062 AATGGGCCTC
* * *
25095072 TAAAATTACCGAAATACCCTCAACGGGTAAAATTACCAAAATACCCTTGATGGGTAAAATTATCG
1 TAAAATTACTGAAATACCCTCGACGGGTAAAATTACCAAAATACCCTTCATGGGTAAAATTATCG
25095137 AAATACCCTCGATGGG
66 AAATACCCTCGATGGG
* *
25095153 TAAAATTACTGAAATACCCTCGATGGGTAAAATTACCAAAATACCC-TCATCGGGTAAAA-TAAC
1 TAAAATTACTGAAATACCCTCGACGGGTAAAATTACCAAAATACCCTTCAT-GGGTAAAATTATC
* *
25095216 TAAAATACCCTCGATCGG
65 -GAAATACCCTCGATGGG
* * * * * * *
25095234 TAAAATAATTGAAATACCCGCGAAGGGTAAAATTATCGAAATACCCTTAATGGGTAAAATTATCG
1 TAAAATTACTGAAATACCCTCGACGGGTAAAATTACCAAAATACCCTTCATGGGTAAAATTATCG
*
25095299 AAATACCCCCGATGGG
66 AAATACCCTCGATGGG
* * ** * * * * *
25095315 TAAAAATTACTGAAATACCTTTGACAAGTAAAATTACCGAAATACCC-CCGAAGGGTAAAATGAC
1 T-AAAATTACTGAAATACCCTCGACGGGTAAAATTACCAAAATACCCTTC-ATGGGTAAAATTAT
*
25095379 CGAAAGACCCTCGATGGG
64 CGAAATACCCTCGATGGG
*
25095397 CAAAATTACTGAAATACCCT
1 TAAAATTACTGAAATACCCT
25095417 TATAGGGTAA
Statistics
Matches: 222, Mismatches: 36, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
80 6 0.03
81 147 0.66
82 69 0.31
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.23
Consensus pattern (81 bp):
TAAAATTACTGAAATACCCTCGACGGGTAAAATTACCAAAATACCCTTCATGGGTAAAATTATCG
AAATACCCTCGATGGG
Found at i:25095665 original size:26 final size:26
Alignment explanation
Indices: 25095631--25095727 Score: 88
Period size: 26 Copynumber: 3.7 Consensus size: 26
25095621 CAAATTCTGT
*
25095631 TACTGGCAGCTTTGCTGCGTTACTGA
1 TACTAGCAGCTTTGCTGCGTTACTGA
* * * * *
25095657 TACTAGCAGCTCTGTTGCATTGCTGT
1 TACTAGCAGCTTTGCTGCGTTACTGA
* * *
25095683 TACTGGCACCTTTGCTGCTTTACT-A
1 TACTAGCAGCTTTGCTGCGTTACTGA
*
25095708 TTACTAGCAACTTTGCTGCG
1 -TACTAGCAGCTTTGCTGCG
25095728 ATATTAGTGT
Statistics
Matches: 54, Mismatches: 16, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
TACTAGCAGCTTTGCTGCGTTACTGA
Found at i:25095869 original size:30 final size:30
Alignment explanation
Indices: 25095833--25095920 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 30
25095823 ACTGCATTTG
25095833 CACTGTTACTGTATTGGGCTAAGGCCCACA
1 CACTGTTACTGTATTGGGCTAAGGCCCACA
* *
25095863 CTCTGTTACTGTATTGGGCTATGGCCCACA
1 CACTGTTACTGTATTGGGCTAAGGCCCACA
** * *
25095893 CACTACTACTGTATAGGGCTCAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
25095921 GACTGATTCT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (30 bp):
CACTGTTACTGTATTGGGCTAAGGCCCACA
Found at i:25106425 original size:23 final size:23
Alignment explanation
Indices: 25106399--25106459 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 23
25106389 TTGTTCTATT
25106399 TTCTCATTATTATTATTTCATTC-
1 TTCTC-TTATTATTATTTCATTCG
*
25106422 TTCT-TAATT-TTATTATCATTCG
1 TTCTCTTATTATTATT-TCATTCG
25106444 TT-TCTTATTATTATTT
1 TTCTCTTATTATTATTT
25106460 ATTTTAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
20 5 0.16
21 11 0.34
22 7 0.22
23 9 0.28
ACGTcount: A:0.21, C:0.13, G:0.02, T:0.64
Consensus pattern (23 bp):
TTCTCTTATTATTATTTCATTCG
Found at i:25117949 original size:3 final size:3
Alignment explanation
Indices: 25117941--25117970 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
25117931 AAAGAAAAGG
25117941 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
25117971 TATCTTAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:25145293 original size:19 final size:20
Alignment explanation
Indices: 25145243--25145290 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
25145233 ATGAAGTAGG
25145243 TGAAAAAAACATGGCTTTGA
1 TGAAAAAAACATGGCTTTGA
25145263 TGAAAAAAACATGGCTTTGA
1 TGAAAAAAACATGGCTTTGA
25145283 TGGAAAAA
1 T-GAAAAA
25145291 CATTCTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.48, C:0.08, G:0.21, T:0.23
Consensus pattern (20 bp):
TGAAAAAAACATGGCTTTGA
Found at i:25146605 original size:50 final size:50
Alignment explanation
Indices: 25146550--25146673 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 50
25146540 GATTGAGATT
* * *
25146550 ATGAGAGGTCCCATGTAAGACCATGT-TTGAGACATCG-CGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTAG-GACAT-GACATGGGCACCGAG
** * *
25146600 ATGAGAGGTCCCCCGTAAGACCATGTCTAGGACATGACATGGGCACTGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGACATGGGCACCGAG
**
25146650 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCATGTAAGACCAT
25146674 ATCTGGGATA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
49 1 0.02
50 58 0.95
51 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGACATGGGCACCGAG
Found at i:25153398 original size:50 final size:50
Alignment explanation
Indices: 25153295--25153487 Score: 179
Period size: 50 Copynumber: 3.7 Consensus size: 50
25153285 AGGAATGAGA
* *
25153295 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCATCATAGAGATTGTGAGAGT
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCA-C--CGAGA---TGAGAGC
* * * * *
25153351 TTCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCACCGAGATGAGAGC
** * * * *
25153401 TCCCCCGTAAGAACATGTGTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCACCGAGATGAGAGC
* * * *
25153451 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCA
25153488 GTACAAACAA
Statistics
Matches: 113, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 75 0.66
53 4 0.04
55 1 0.01
56 33 0.29
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCACCGAGATGAGAGC
Found at i:25184883 original size:25 final size:25
Alignment explanation
Indices: 25184833--25184900 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
25184823 GATAGAAAGG
*
25184833 AAAGAGAAGAAAAGAAAATGGAGAA
1 AAAGAGAAGAAAAGAAAATAGAGAA
* * *
25184858 AAAGAGAGGAAAAGGAAATTAGGAAAA
1 AAAGAGAAGAAAA-GAAAATA-GAGAA
25184885 ATAAGAGAA-AAAAGAA
1 A-AAGAGAAGAAAAGAA
25184901 GAGGACAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
25 12 0.34
26 8 0.23
27 9 0.26
28 6 0.17
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (25 bp):
AAAGAGAAGAAAAGAAAATAGAGAA
Found at i:25197400 original size:13 final size:14
Alignment explanation
Indices: 25197375--25197403 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
25197365 GAAAAGATGG
25197375 TAATTATTAATATA
1 TAATTATTAATATA
25197389 TAATTA-TAATATA
1 TAATTATTAATATA
25197402 TA
1 TA
25197404 TTAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATTATTAATATA
Found at i:25203430 original size:26 final size:27
Alignment explanation
Indices: 25203378--25203438 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
25203368 TCTTGTAAGT
*
25203378 GTTCTGAAACTGATACATGCTATGATA
1 GTTCTGAAACTGATACATGCTACGATA
* *
25203405 -TTCTGAAACTGATATATGTTACGATA
1 GTTCTGAAACTGATACATGCTACGATA
25203431 GTT-TGAAA
1 GTTCTGAAA
25203439 GTACTGTAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.36
Consensus pattern (27 bp):
GTTCTGAAACTGATACATGCTACGATA
Found at i:25210384 original size:34 final size:34
Alignment explanation
Indices: 25210332--25210399 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
25210322 ATATTTTTGA
* *
25210332 CACTATACTGAGATGGGCTAAAGCCCAA-ACTAT
1 CACTATACTGAAAAGGGCTAAAGCCCAAGACTAT
* *
25210365 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTAT
1 CACT-ATACTGAAAAGGGCTAAAGCCCAAGACTAT
25210400 TCAACTGTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 4 0.14
34 20 0.69
35 5 0.17
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.21
Consensus pattern (34 bp):
CACTATACTGAAAAGGGCTAAAGCCCAAGACTAT
Found at i:25219427 original size:28 final size:28
Alignment explanation
Indices: 25219396--25219449 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
25219386 ATATAATACA
25219396 GTCAAGCTACAAGATACAGAATATTGTG
1 GTCAAGCTACAAGATACAGAATATTGTG
* * *
25219424 GTCAAGCTGCCAGATACAGGATATTG
1 GTCAAGCTACAAGATACAGAATATTG
25219450 CGGGTATACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (28 bp):
GTCAAGCTACAAGATACAGAATATTGTG
Found at i:25221837 original size:27 final size:27
Alignment explanation
Indices: 25221799--25222179 Score: 308
Period size: 27 Copynumber: 14.2 Consensus size: 27
25221789 TTACACTGTT
* *
25221799 ATGACCAAAATACCTCTAAAGGGTAAA
1 ATGACCAAAATACCCCCAAAGGGTAAA
* * *
25221826 ATGACTAAAATACCCCCATAGGGTAGA
1 ATGACCAAAATACCCCCAAAGGGTAAA
*
25221853 ATGACCGAAA-ACCCCCATAA-GGTAAA
1 ATGACCAAAATACCCCCA-AAGGGTAAA
* * *
25221879 ATAACCGAAATACCCCCACAGGGTAAA
1 ATGACCAAAATACCCCCAAAGGGTAAA
* * *
25221906 ATGAGCAAAATAACCCCATAGGGTAAA
1 ATGACCAAAATACCCCCAAAGGGTAAA
*
25221933 ATGAGCAAAATACCCCCATAA-GGTAAA
1 ATGACCAAAATACCCCCA-AAGGGTAAA
* * * * *
25221960 ATGAACGAAATGCCCCTAGAGGGTAAA
1 ATGACCAAAATACCCCCAAAGGGTAAA
* * * *** *
25221987 ATAAGCGAAATACCCCTTTAGTGTAAA
1 ATGACCAAAATACCCCCAAAGGGTAAA
* *
25222014 ATGAGCGAAATACCCCCATAA-GGTAAA
1 ATGACCAAAATACCCCCA-AAGGGTAAA
* * * *
25222041 CTGACCGAATTACCCCCACAGGGTAAA
1 ATGACCAAAATACCCCCAAAGGGTAAA
* *
25222068 ATGATCAAAATACCCTCACAA-GGTAAA
1 ATGACCAAAATACCCCCA-AAGGGTAAA
* * * *
25222095 ATGACCGAACTACCCCCATAGGGTAGA
1 ATGACCAAAATACCCCCAAAGGGTAAA
*
25222122 ATGATCAAAATACCCCCATAA-GGTAAA
1 ATGACCAAAATACCCCCA-AAGGGTAAA
* *
25222149 ATGACCGAAATA-CCCCAAAAGGTAAA
1 ATGACCAAAATACCCCCAAAGGGTAAA
25222175 ATGAC
1 ATGAC
25222180 TATTATACCC
Statistics
Matches: 286, Mismatches: 57, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
25 2 0.01
26 41 0.14
27 239 0.84
28 4 0.01
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.16
Consensus pattern (27 bp):
ATGACCAAAATACCCCCAAAGGGTAAA
Found at i:25221946 original size:54 final size:54
Alignment explanation
Indices: 25221820--25222178 Score: 389
Period size: 54 Copynumber: 6.7 Consensus size: 54
25221810 ACCTCTAAAG
** * * *
25221820 GGTAAAATGACTAAAATACCCCCATAGGGTAGAATGACCGAAA-ACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAA
* * * *
25221873 GGTAAAATAACCGAAATACCCCCACAGGGTAAAATGAGCAAAATAACCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAA
* * * * * * * * *
25221927 GGTAAAATGAGCAAAATACCCCCATAAGGTAAAATGAACGAAATGCCCCTAGAG
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAA
* * ** * *
25221981 GGTAAAATAAGCGAAATACCCCTTTAGTGTAAAATGAGCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAA
* * * * * *
25222035 GGTAAACTGACCGAATTACCCCCACAGGGTAAAATGATCAAAATACCCTCACAA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAA
* * *
25222089 GGTAAAATGACCGAACTACCCCCATAGGGTAGAATGATCAAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAA
* *
25222143 GGTAAAATGACCGAAATA-CCCCAAAAGGTAAAATGA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
25222179 CTATTATACC
Statistics
Matches: 252, Mismatches: 53, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
53 51 0.20
54 201 0.80
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.16
Consensus pattern (54 bp):
GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAA
Found at i:25221983 original size:81 final size:80
Alignment explanation
Indices: 25221818--25222179 Score: 397
Period size: 81 Copynumber: 4.5 Consensus size: 80
25221808 ATACCTCTAA
*
25221818 AGGGTAAAATGA-CTAAAATACCCCCATAGGGTAGAATGACCGAAA-ACCCCCATAAGGTAAAAT
1 AGGGTAAAATGAGC-AAAATA-CCCCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAAT
25221881 -AACCGAAATACCCCCAC
64 GAA-CGAAATACCCCCAC
* *
25221898 AGGGTAAAATGAGCAAAATAACCCCATAGGGTAAAATGAGCAAAATACCCCCATAAGGTAAAATG
1 AGGGTAAAATGAGCAAAAT-ACCCCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATG
* * *
25221963 AACGAAATGCCCCTAG
65 AACGAAATACCCCCAC
* * * * * *
25221979 AGGGTAAAATAAGCGAAATACCCCTTTAGTGTAAAATGAGCGAAATACCCCCATAAGGTAAACTG
1 AGGGTAAAATGAGCAAAATACCCC-ATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATG
* *
25222044 ACCGAATTACCCCCAC
65 AACGAAATACCCCCAC
* * * * * *
25222060 AGGGTAAAATGATCAAAATACCCTCACAAGGTAAAATGACCGAACTACCCCCATAGGGTAGAATG
1 AGGGTAAAATGAGCAAAATACCC-CATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATG
* * *
25222125 ATCAAAATACCCCCAT
65 AACGAAATACCCCCAC
* * * * *
25222141 AAGGTAAAATGACCGAAATACCCCAAAAGGTAAAATGAC
1 AGGGTAAAATGAGCAAAATACCCCATAGGGTAAAATGAC
25222180 TATTATACCC
Statistics
Matches: 239, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
80 58 0.24
81 178 0.74
82 3 0.01
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.16
Consensus pattern (80 bp):
AGGGTAAAATGAGCAAAATACCCCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGA
ACGAAATACCCCCAC
Found at i:25224869 original size:27 final size:27
Alignment explanation
Indices: 25224776--25225237 Score: 437
Period size: 27 Copynumber: 17.2 Consensus size: 27
25224766 TTTACACTGT
* * * *
25224776 AATGACCAAAATACCCTCATAAGGTTA
1 AATGACCGAAATACCCCCATAGGGTAA
** *
25224803 AATGACTAAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
25224830 AATGACTC-AAATACCCTCATAAGATAA
1 AATGAC-CGAAATACCCCCATAGGGTAA
* * *
25224857 AATGACCGGAATAACCCCACAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
25224884 AATGACCGAAATACCCCCACAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
* *
25224911 AATGACCGGAATAACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
25224938 AATGACCAAAATA-CCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* ** * * * *
25224964 AATGATCGTTATGCCCTCATAAGATAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * * *
25224991 AATGACCGGAATAACCCTACAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
25225018 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
** * * *
25225045 AATGATTGAAATACTCCCATAAGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
*
25225072 AATG-CTCAAAATACCCCCATAGGGTAA
1 AATGAC-CGAAATACCCCCATAGGGTAA
* * * *
25225099 AATGATCGAAATACCCCCACAAGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
25225126 AATGACTGGAATAACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
25225153 AATGACTGAAATACCCCCACAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAA
* *
25225180 AATGACCGGAATAACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
*
25225207 AATGACCGAAATA-CCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
25225233 AATGA
1 AATGA
25225238 TCGTTATACC
Statistics
Matches: 347, Mismatches: 83, Indels: 11
0.79 0.19 0.02
Matches are distributed among these distances:
26 38 0.11
27 309 0.89
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAA
Found at i:25225664 original size:28 final size:28
Alignment explanation
Indices: 25225620--25225700 Score: 108
Period size: 28 Copynumber: 2.9 Consensus size: 28
25225610 ACTGTATTGC
* * * *
25225620 TACTGTATTAGGTTAAGGCTCACACTGA
1 TACTGTATTGGGCTAAGGCCCACACTAA
*
25225648 TATTGTATTGGGCTAAGGCCCACACTAA
1 TACTGTATTGGGCTAAGGCCCACACTAA
*
25225676 TACTGAATTGGGCTAAGGCCCACAC
1 TACTGTATTGGGCTAAGGCCCACAC
25225701 CGCTACTGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACACTAA
Found at i:25225707 original size:28 final size:28
Alignment explanation
Indices: 25225633--25225723 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
25225623 TGTATTAGGT
* * *
25225633 TAAGGCTCACACTGATATTGTATTGGGC
1 TAAGGCCCACACTGATACTGAATTGGGC
*
25225661 TAAGGCCCACACTAATACTGAATTGGGC
1 TAAGGCCCACACTGATACTGAATTGGGC
* *
25225689 TAAGGCCCACACCGCTACTGAATTGGG-
1 TAAGGCCCACACTGATACTGAATTGGGC
*
25225716 TAAAGCCC
1 TAAGGCCC
25225724 TTATTGTACT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 7 0.13
28 48 0.87
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (28 bp):
TAAGGCCCACACTGATACTGAATTGGGC
Found at i:25227899 original size:27 final size:26
Alignment explanation
Indices: 25227869--25228084 Score: 220
Period size: 27 Copynumber: 8.2 Consensus size: 26
25227859 TTTAGCTGTT
* *
25227869 ATGACCAAAATACCTCTATAGGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
* *
25227896 ATGACTGAAATACCGCCATAGGGTAGA
1 ATGACCGAAATACC-CCATAGGGTAAA
* *
25227923 ATGACAGAAATACCCCCATAAGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
25227950 ATGACCGAAATA-CCC-TAGGGGTAAA
1 ATGACCGAAATACCCCATA-GGGTAAA
* *
25227975 ATGACTGAAGTACCCCATAGGGTAAA
1 ATGACCGAAATACCCCATAGGGTAAA
* * * *
25228001 ATAACCAAAATAACCCATAGGGTAGA
1 ATGACCGAAATACCCCATAGGGTAAA
* *
25228027 ATGATCGAAATACCCCAATTGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
25228054 ATGACTGAAACACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
25228081 ATGA
1 ATGA
25228085 TTGTTATACC
Statistics
Matches: 155, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
24 2 0.01
25 19 0.12
26 42 0.27
27 90 0.58
28 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (26 bp):
ATGACCGAAATACCCCATAGGGTAAA
Found at i:25228051 original size:79 final size:78
Alignment explanation
Indices: 25227889--25228082 Score: 239
Period size: 79 Copynumber: 2.4 Consensus size: 78
25227879 TACCTCTATA
* * *
25227889 GGGTAAAATGACTGAAATACCGCCATAGGGTAGAATGACAGAAATACCCCCATAAGGTAAAATGA
1 GGGTAAAATGACTGAAATACC-CCATAGGGTAAAATAACAGAAATACACCCATAAGGTAAAATGA
*
25227954 CCGAAATACCCTAG
65 CCGAAATACCCAAG
* * *
25227968 GGGTAAAATGACTGAAGTACCCCATAGGGTAAAATAACCA-AAATA-ACCCATAGGGTAGAATGA
1 GGGTAAAATGACTGAAATACCCCATAGGGTAAAATAA-CAGAAATACACCCATAAGGTAAAATGA
* *
25228031 TCGAAATACCCCAATT
65 CCGAAATA-CCCAA-G
*
25228047 GGGTAAAATGACTGAAACACCCCTATAGGGTAAAAT
1 GGGTAAAATGACTGAAATACCCC-ATAGGGTAAAAT
25228083 GATTGTTATA
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
77 22 0.22
78 23 0.23
79 43 0.43
80 12 0.12
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (78 bp):
GGGTAAAATGACTGAAATACCCCATAGGGTAAAATAACAGAAATACACCCATAAGGTAAAATGAC
CGAAATACCCAAG
Found at i:25230044 original size:27 final size:27
Alignment explanation
Indices: 25230014--25230181 Score: 203
Period size: 27 Copynumber: 6.2 Consensus size: 27
25230004 CATACAATAG
**
25230014 AATGACCGAAATACTTCTATAGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
* * *
25230041 AATGGCCGAAATACCCCCACAGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
*
25230068 AATGACTGAAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
* * *
25230095 AATGACCAAAATA-CCATCATAGGGTAG
1 AATGACCGAAATACCCCT-ATAGGGTAA
* *
25230122 AATGACCGAAATACCCCAATTGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
**
25230149 AATGATTGAAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
25230176 AATGAC
1 AATGAC
25230182 TATTATACCC
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.03
27 111 0.96
28 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (27 bp):
AATGACCGAAATACCCCTATAGGGTAA
Found at i:25230052 original size:54 final size:53
Alignment explanation
Indices: 25229981--25230181 Score: 195
Period size: 54 Copynumber: 3.7 Consensus size: 53
25229971 TACCTCAATG
* * *** **
25229981 GGGTAAATTGACTGAAATACACTCATACAATAGAATGACCGAAATACTTCTATA
1 GGGTAAAATGACCGAAATAC-CTCATAGGGTAGAATGACCGAAATACCCCTATA
* * * * *
25230035 GGGTAAAATGGCCGAAATACCCCCACAGGGTAAAATGACTGAAATACCCCTATA
1 GGGTAAAATGACCGAAATA-CCTCATAGGGTAGAATGACCGAAATACCCCTATA
* * *
25230089 GGGTAAAATGACCAAAATACCATCATAGGGTAGAATGACCGAAATACCCCAATT
1 GGGTAAAATGACCGAAATACC-TCATAGGGTAGAATGACCGAAATACCCCTATA
** * *
25230143 GGGTAAAATGATTGAAATACCCCTATAGGGTAAAATGAC
1 GGGTAAAATGACCGAAATACCTC-ATAGGGTAGAATGAC
25230182 TATTATACCC
Statistics
Matches: 119, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.03
54 115 0.97
55 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (53 bp):
GGGTAAAATGACCGAAATACCTCATAGGGTAGAATGACCGAAATACCCCTATA
Found at i:25230190 original size:81 final size:81
Alignment explanation
Indices: 25230014--25230181 Score: 248
Period size: 81 Copynumber: 2.1 Consensus size: 81
25230004 CATACAATAG
* * * *
25230014 AATGACCGAAATA-CTTCTATAGGGTAAAATGGCCGAAATACCCCCACAGGGTAAAATGACTGAA
1 AATGACCAAAATACCATC-ATAGGGTAAAATGACCGAAATACCCCAACAGGGTAAAATGACTGAA
25230078 ATACCCCTATAGGGTAA
65 ATACCCCTATAGGGTAA
* ** *
25230095 AATGACCAAAATACCATCATAGGGTAGAATGACCGAAATACCCCAATTGGGTAAAATGATTGAAA
1 AATGACCAAAATACCATCATAGGGTAAAATGACCGAAATACCCCAACAGGGTAAAATGACTGAAA
25230160 TACCCCTATAGGGTAA
66 TACCCCTATAGGGTAA
25230176 AATGAC
1 AATGAC
25230182 TATTATACCC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 75 0.96
82 3 0.04
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (81 bp):
AATGACCAAAATACCATCATAGGGTAAAATGACCGAAATACCCCAACAGGGTAAAATGACTGAAA
TACCCCTATAGGGTAA
Found at i:25230618 original size:28 final size:28
Alignment explanation
Indices: 25230578--25230679 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 28
25230568 ACTGTAATGT
* *
25230578 TATTGTATTGGGCTTAGGCCCGCACTGA
1 TATTGTATTGGGCTAAGGCCCACACTGA
25230606 TATTGTATTGGGCTAAGGCCCACACTGA
1 TATTGTATTGGGCTAAGGCCCACACTGA
* * * * *
25230634 TACTGAATTAGGCTAAAGCCCACACTGT
1 TATTGTATTGGGCTAAGGCCCACACTGA
* *
25230662 TACTGAATTGGGCTAAGG
1 TATTGTATTGGGCTAAGG
25230680 GCCTCATTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (28 bp):
TATTGTATTGGGCTAAGGCCCACACTGA
Found at i:25231374 original size:27 final size:27
Alignment explanation
Indices: 25231354--25231648 Score: 303
Period size: 27 Copynumber: 11.0 Consensus size: 27
25231344 AAATACCTAT
25231354 ATAGGGTAAAATGACTGAAATACCCCC
1 ATAGGGTAAAATGACTGAAATACCCCC
* * *
25231381 ATAGGGTAGAATGACAGAAATACCTCC
1 ATAGGGTAAAATGACTGAAATACCCCC
* **
25231408 ATAGGATAAAATGAAC-GAAATACTTCC
1 ATAGGGTAAAATG-ACTGAAATACCCCC
*
25231435 ATAGGGTAAAATGACTGAAATACCCCT
1 ATAGGGTAAAATGACTGAAATACCCCC
* * *
25231462 ATAGGGTAAAATAATTGAAATATCCCC
1 ATAGGGTAAAATGACTGAAATACCCCC
25231489 ATAGGGTAAAA-GA-TCGAAATACCCCC
1 ATAGGGTAAAATGACT-GAAATACCCCC
** * * *
25231515 ATAAAGTAAAATTACCGAAATACCTCC
1 ATAGGGTAAAATGACTGAAATACCCCC
*
25231542 ATAGGATAAAATGA-TCGAAATACCCCCC
1 ATAGGGTAAAATGACT-GAAATA-CCCCC
* * **
25231570 ATAGGGTAGAATGACCGAAATACCCAT
1 ATAGGGTAAAATGACTGAAATACCCCC
* *
25231597 ATGGGGTAAAATGACCGAAATA-CCCC
1 ATAGGGTAAAATGACTGAAATACCCCC
**
25231623 ATAGGGTAAAATGACTGTTATACCCC
1 ATAGGGTAAAATGACTGAAATACCCC
25231649 TAGGAGATGA
Statistics
Matches: 219, Mismatches: 40, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
25 1 0.00
26 42 0.19
27 152 0.69
28 24 0.11
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
ATAGGGTAAAATGACTGAAATACCCCC
Found at i:25232053 original size:28 final size:28
Alignment explanation
Indices: 25232013--25232089 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
25232003 ACTGTAATGT
*
25232013 TACTTTATTGGGCTAAGGCCCACACTGA
1 TACTATATTGGGCTAAGGCCCACACTGA
**
25232041 TACTATATTGGGCTAAGGCCCACACTTT
1 TACTATATTGGGCTAAGGCCCACACTGA
25232069 TACTGA-ATTGGGCTAAGGCCC
1 TACT-ATATTGGGCTAAGGCCC
25232090 TAATTGTACT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (28 bp):
TACTATATTGGGCTAAGGCCCACACTGA
Found at i:25232899 original size:14 final size:14
Alignment explanation
Indices: 25232880--25232906 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25232870 CATTTCTTGG
25232880 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
25232894 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
25232907 ACTAGACCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:25236715 original size:21 final size:21
Alignment explanation
Indices: 25236686--25236740 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
25236676 AAAGCTTAAG
25236686 TTTGGAAACTTAATTTGAAAA
1 TTTGGAAACTTAATTTGAAAA
*
25236707 TTTGAAAACTTAATTTGAAAA
1 TTTGGAAACTTAATTTGAAAA
25236728 TTTGGAAACTTAA
1 TTTGGAAACTTAA
25236741 AAATTAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (21 bp):
TTTGGAAACTTAATTTGAAAA
Found at i:25236721 original size:13 final size:13
Alignment explanation
Indices: 25236669--25236727 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
25236659 GATATATTTG
*
25236669 TAATTTGAAAGCT
1 TAATTTGAAAACT
*
25236682 TAAGTTTGGAAACT
1 TAA-TTTGAAAACT
25236696 TAATTTG--AA--
1 TAATTTGAAAACT
25236705 -AATTTGAAAACT
1 TAATTTGAAAACT
25236717 TAATTTGAAAA
1 TAATTTGAAAA
25236728 TTTGGAAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
8 6 0.16
10 2 0.05
11 2 0.05
13 17 0.45
14 11 0.29
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:25237044 original size:35 final size:35
Alignment explanation
Indices: 25236976--25237210 Score: 323
Period size: 35 Copynumber: 6.8 Consensus size: 35
25236966 TTCACTTGTC
* *
25236976 TTTTCTTGCAGGGAATAT-TTCTGTTCACACATTA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACACATTA
* *
25237010 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACACATTA
* * *
25237045 TTTTGTTGCAGGGAATCTCTCCTATTCACACATCA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACACATTA
*
25237080 -TTTCTTGCAGGGAATCTCTCCTGTTCACTCATTA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACACATTA
* *
25237114 TTTTTTTGCAGGGAATCTCTCCTGTTCACACATCA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACACATTA
* *
25237149 -TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACACATTA
* *
25237183 TGTTGTTGCAGGGAATCTCTCCTGTTCA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCA
25237211 TGTATCATTT
Statistics
Matches: 177, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
34 76 0.43
35 101 0.57
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.40
Consensus pattern (35 bp):
TTTTCTTGCAGGGAATCTCTCCTGTTCACACATTA
Found at i:25237142 original size:104 final size:103
Alignment explanation
Indices: 25236977--25237210 Score: 335
Period size: 104 Copynumber: 2.3 Consensus size: 103
25236967 TCACTTGTCT
* * *
25236977 TTTCTTGCAGGGAATAT-TTCTGTTCACACATTATTTTGTTGCAGGGAATCTCTCCTGTTCACGC
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
* *
25237041 ATTATTTTGTTGCAGGGAATCTCTCCTATTCACACATCA
66 ATCA-TTTCTTGCAGGGAATCTCTCCTATTCACACATCA
* *
25237080 TTTCTTGCAGGGAATCTCTCCTGTTCACTCATTATTTTTTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
* * * *
25237145 ATCATTTCTTGTAGGGAATCTCTCCTGTTCACGCATTA
66 ATCATTTCTTGCAGGGAATCTCTCCTATTCACACATCA
*
25237183 TGTTGTTGCAGGGAATCTCTCCTGTTCA
1 T-TTCTTGCAGGGAATCTCTCCTGTTCA
25237211 TGTATCATTT
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
103 46 0.39
104 71 0.61
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (103 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACACATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
ATCATTTCTTGCAGGGAATCTCTCCTATTCACACATCA
Found at i:25237223 original size:69 final size:69
Alignment explanation
Indices: 25236976--25237210 Score: 364
Period size: 69 Copynumber: 3.4 Consensus size: 69
25236966 TTCACTTGTC
* * * * *
25236976 TTTTCTTGCAGGGAATAT-TTCTGTTCACACATTATTTTGTTGCAGGGAATCTCTCCTGTTCACG
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCA-TTTCTTGCAGGGAATCTCTCCTGTTCACG
25237040 CATTA
65 CATTA
* *
25237045 TTTTGTTGCAGGGAATCTCTCCTATTCACACATCATTTCTTGCAGGGAATCTCTCCTGTTCACTC
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCATTTCTTGCAGGGAATCTCTCCTGTTCACGC
25237110 ATTA
66 ATTA
* *
25237114 TTTTTTTGCAGGGAATCTCTCCTGTTCACACATCATTTCTTGTAGGGAATCTCTCCTGTTCACGC
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCATTTCTTGCAGGGAATCTCTCCTGTTCACGC
25237179 ATTA
66 ATTA
*
25237183 TGTTGTTGCAGGGAATCTCTCCTGTTCA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCA
25237211 TGTATCATTT
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
69 139 0.91
70 13 0.09
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.40
Consensus pattern (69 bp):
TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCATTTCTTGCAGGGAATCTCTCCTGTTCACGC
ATTA
Found at i:25239802 original size:21 final size:22
Alignment explanation
Indices: 25239772--25239816 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
25239762 GAACAAATTG
25239772 TTGATTCTATTTCTTTCTTG-AT
1 TTGATTCTA-TTCTTTCTTGTAT
*
25239794 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCTTTCTTGTAT
25239815 TT
1 TT
25239817 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCTTTCTTGTAT
Found at i:25244073 original size:30 final size:30
Alignment explanation
Indices: 25244016--25244077 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
25244006 AGAACTCAGA
** * *
25244016 AATATTTACAAAAAGAGGTATCTAATTTTT
1 AATATTTACAAAAAGAGCAACCAAATTTTT
25244046 AATATTTACAAAAAGAGCAACCAAATTTTT
1 AATATTTACAAAAAGAGCAACCAAATTTTT
25244076 AA
1 AA
25244078 AAAGAATTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGCAACCAAATTTTT
Found at i:25260601 original size:15 final size:15
Alignment explanation
Indices: 25260581--25260612 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25260571 GCAAATTACC
*
25260581 TTTTGACCTTCTTGA
1 TTTTGACCATCTTGA
25260596 TTTTGACCATCTTGA
1 TTTTGACCATCTTGA
25260611 TT
1 TT
25260613 GTTACCCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.12, T:0.53
Consensus pattern (15 bp):
TTTTGACCATCTTGA
Found at i:25265787 original size:28 final size:29
Alignment explanation
Indices: 25265755--25265835 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 29
25265745 ATCAGTACAG
25265755 TGTGGGCCTTAGCCCAA-AATAGTAATAA
1 TGTGGGCCTTAGCCCAATAATAGTAATAA
* * * *
25265783 TGTGGGCGTTAGACCAATACTAG-AATAG
1 TGTGGGCCTTAGCCCAATAATAGTAATAA
*
25265811 TGTAGGCCTTAGCCCAATAA-AGTAA
1 TGTGGGCCTTAGCCCAATAATAGTAA
25265836 CTAGTACAGT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 2 0.05
28 37 0.86
29 4 0.09
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (29 bp):
TGTGGGCCTTAGCCCAATAATAGTAATAA
Found at i:25266216 original size:27 final size:27
Alignment explanation
Indices: 25266153--25266336 Score: 151
Period size: 27 Copynumber: 6.8 Consensus size: 27
25266143 ATTTCATCTC
* *
25266153 CTAGGGGTATAAT-AGTTATTTTACCCT
1 CTAGGGGTAT-TTCAGTCATTTTACCCT
* *
25266180 ATGGGGGTATTTCAGTCATTTTACCCT
1 CTAGGGGTATTTCAGTCATTTTACCCT
* * * *
25266207 TTAGGAGTATTTCGGTCATTTAACCCT
1 CTAGGGGTATTTCAGTCATTTTACCCT
*
25266234 CCAGGGGTATTTC-GATCATTTTACCCT
1 CTAGGGGTATTTCAG-TCATTTTACCCT
* *
25266261 CCAAGGGGTATTTCAGTCATCTTACCCT
1 -CTAGGGGTATTTCAGTCATTTTACCCT
* * *
25266289 CT-GAGGGTATTT-TGATCATCTTACTCT
1 CTAG-GGGTATTTCAG-TCATTTTACCCT
* *
25266316 CTGGGGGTATTTCGGTCATTT
1 CTAGGGGTATTTCAGTCATTT
25266337 GCCCACGAAT
Statistics
Matches: 129, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 4 0.03
27 99 0.77
28 25 0.19
29 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (27 bp):
CTAGGGGTATTTCAGTCATTTTACCCT
Found at i:25266297 original size:55 final size:53
Alignment explanation
Indices: 25266172--25266336 Score: 172
Period size: 54 Copynumber: 3.1 Consensus size: 53
25266162 TAATAGTTAT
* * * *
25266172 TTTACCCTATGGGGGTATTTC-AGTCATTTTACCCTTTAGGAGTATTTCGGTCA
1 TTTACCCTCTGAGGGTATTTCGA-TCATTTTACCCTCTAGGGGTATTTCGGTCA
* * *
25266225 TTTAACCCTC-CAGGGGTATTTCGATCATTTTACCCTCCAAGGGGTATTTCAGTCA
1 TTT-ACCCTCTGA-GGGTATTTCGATCATTTTACCCT-CTAGGGGTATTTCGGTCA
* * * *
25266280 TCTTACCCTCTGAGGGTATTTTGATCATCTTACTCTCTGGGGGTATTTCGGTCA
1 T-TTACCCTCTGAGGGTATTTCGATCATTTTACCCTCTAGGGGTATTTCGGTCA
25266334 TTT
1 TTT
25266337 GCCCACGAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
53 5 0.05
54 42 0.46
55 42 0.46
56 3 0.03
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (53 bp):
TTTACCCTCTGAGGGTATTTCGATCATTTTACCCTCTAGGGGTATTTCGGTCA
Found at i:25266299 original size:82 final size:82
Alignment explanation
Indices: 25266183--25266336 Score: 204
Period size: 82 Copynumber: 1.9 Consensus size: 82
25266173 TTACCCTATG
* * *
25266183 GGGGTATTTCAGTCATTTTACCCTTTAGGAGTATTTCGGTCAT-TTAACCCTCCAGGGGTATTTC
1 GGGGTATTTCAGTCATCTTACCCTTGAGGAGTATTTCGATCATCTT-ACCCTCCAGGGGTATTTC
25266247 GATCATTTTACCCTCCAA
65 GATCATTTTACCCTCCAA
* * **
25266265 GGGGTATTTCAGTCATCTTACCCTCTGAGG-GTATTTTGATCATCTTACTCTCTGGGGGTATTTC
1 GGGGTATTTCAGTCATCTTACCCT-TGAGGAGTATTTCGATCATCTTACCCTCCAGGGGTATTTC
*
25266329 GGTCATTT
65 GATCATTT
25266337 GCCCACGAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
82 56 0.90
83 6 0.10
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (82 bp):
GGGGTATTTCAGTCATCTTACCCTTGAGGAGTATTTCGATCATCTTACCCTCCAGGGGTATTTCG
ATCATTTTACCCTCCAA
Found at i:25272119 original size:28 final size:27
Alignment explanation
Indices: 25272087--25272185 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
25272077 TTAATAAGTA
* *
25272087 CGCACACTTAGTGCTTAATAATCACACT
1 CGCACACTTAGTGCTT-ATAATTAAACT
*
25272115 CGCACACTTAGTGCTT-TACCATTATACT
1 CGCACACTTAGTGCTTATA--ATTAAACT
25272143 CGCACACTTAGTGCATT-TCAATTAAACT
1 CGCACACTTAGTGC-TTAT-AATTAAACT
25272171 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25272186 AATCTCATTA
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
26 2 0.03
27 1 0.02
28 57 0.89
29 3 0.05
30 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATTAAACT
Found at i:25276498 original size:28 final size:28
Alignment explanation
Indices: 25276445--25276517 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
25276435 ACAGTGTCGA
* *
25276445 CCTTAGCCCAAAACAATAACAATGTGGG
1 CCTTAGCCCAATACAGTAACAATGTGGG
* * *
25276473 CGTTAGCCCAATACAGTAATACTGTGGG
1 CCTTAGCCCAATACAGTAACAATGTGGG
25276501 CCTTAGCCCAATACAGT
1 CCTTAGCCCAATACAGT
25276518 GATCAGTACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (28 bp):
CCTTAGCCCAATACAGTAACAATGTGGG
Found at i:25281863 original size:4 final size:4
Alignment explanation
Indices: 25281847--25281876 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
25281837 TGGAAAACCT
*
25281847 AAGA AATA AAGA AAGA AAGA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
25281877 ACGAAACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (4 bp):
AAGA
Found at i:25291249 original size:42 final size:43
Alignment explanation
Indices: 25291171--25291253 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 43
25291161 ATATTTCATA
* *
25291171 TCTCATTTCATAATCATTTCTCATATTTGCCATTTCAATATTT
1 TCTCATCTCATAATCATTTATCATATTTGCCATTTCAATATTT
* *
25291214 TCTCATCTCATATTCA-TTATCATATTTGTCATTTCAATAT
1 TCTCATCTCATAATCATTTATCATATTTGCCATTTCAATAT
25291254 CAATCACATA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 22 0.61
43 14 0.39
ACGTcount: A:0.27, C:0.20, G:0.02, T:0.51
Consensus pattern (43 bp):
TCTCATCTCATAATCATTTATCATATTTGCCATTTCAATATTT
Found at i:25292410 original size:20 final size:19
Alignment explanation
Indices: 25292381--25292420 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
25292371 TGTTCCCTTC
25292381 TTCTTTTTCTTTCTTTCTT
1 TTCTTTTTCTTTCTTTCTT
25292400 TTCTCTTTTCTTTCTTTCTT
1 TTCT-TTTTCTTTCTTTCTT
25292420 T
1 T
25292421 GTTTAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (19 bp):
TTCTTTTTCTTTCTTTCTT
Found at i:25292411 original size:16 final size:14
Alignment explanation
Indices: 25292381--25292416 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
25292371 TGTTCCCTTC
25292381 TTCTTTTTCTTTCT
1 TTCTTTTTCTTTCT
25292395 TTCTTTTCTCTTTTCT
1 TTCTTTT-TC-TTTCT
25292411 TTCTTT
1 TTCTTT
25292417 CTTTGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.35
15 2 0.10
16 11 0.55
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
TTCTTTTTCTTTCT
Found at i:25297180 original size:51 final size:50
Alignment explanation
Indices: 25297049--25297489 Score: 313
Period size: 51 Copynumber: 8.7 Consensus size: 50
25297039 AAAGTGATGG
* * * * * *
25297049 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGAATGA--TGGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA-CGGAA-AACTTTGA
* * * * * *
25297099 TCGCATGTGTAGTACTATGTGTAGGATACTATGCGTACGGAATAGCTTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTACGGAA-AACTTTGA
* * * *
25297150 TCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATC-GATAAA-TAATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA-CGGA-AAACT-TTGA
* * * *
25297201 TCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTACGGA-AAACTTTGA
* * * * * * * *
25297252 GCACGTGTGTAGTACTGTGTGAATGCTACAACGTGTATCGGTAAACTATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA-CGGAAAACTTTGA
* * * * * ** *
25297303 TTACATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCAAAAAGCTTTGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTACGGAAAA-CTTTGA
* * * *
25297354 TCACGTATGTAGTACTATGTGAAGGCTACTACATGAG-CCGTAAAAC-TTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACT--ATGTGTACGGAAAACTTTGA
* * *
25297404 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAAC--TGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTAC-GGAAAACTTTGA
* *
25297453 TCACGTGTGTAGCACTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA
25297490 TCAAATGATA
Statistics
Matches: 309, Mismatches: 69, Indels: 27
0.76 0.17 0.07
Matches are distributed among these distances:
48 3 0.01
49 44 0.14
50 76 0.25
51 172 0.56
52 10 0.03
53 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTACGGAAAACTTTGA
Found at i:25297257 original size:102 final size:101
Alignment explanation
Indices: 25297050--25297491 Score: 452
Period size: 102 Copynumber: 4.4 Consensus size: 101
25297040 AAGTGATGGT
* * * *
25297050 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-A-GAATGATGGGTCGCATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAAT-GGTCACATGTGTAGTA
* * * * * *
25297113 CTATGTGTAGGATACTATGCGTACGGAATAGCTTTGAT
65 CTAAGTGAAGGCTACTATGTGTACCGAA-AGCTTTGAG
*
25297151 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
25297216 TAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGAG
66 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGAG
* * * * *
25297253 CACGTGTGTAGTACTGTGTGAATGCTACAACGTGTATCGGTAAACT-ATGGTTACATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
* * *
25297317 CTAAGTGAAGGCTACAATGGGTACCAAAAAGCTTTG-G
65 CTAAGTGAAGGCTACTATGTGTACC-GAAAGCTTTGAG
* * * * * *
25297354 TCACGTATGTAGTACTATGTGAAGGCTACTACATG-AGCCG-TAAA-ACTTGATCACGTGTGTAG
1 -CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCGATAAATA-ATGGTCACATGTGTAG
* * * * * *
25297416 TACTATGTGAAGGCTACTACGTGAACTGTAAAAC--TGAT
63 TACTAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGAG
*
25297454 CACGTGTGTAGCACTATGTGAAGGCTACTACGTGTATC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC
25297492 AAATGATAAA
Statistics
Matches: 288, Mismatches: 41, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
99 34 0.12
100 1 0.00
101 79 0.27
102 166 0.58
103 8 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGAG
Found at i:25303805 original size:40 final size:40
Alignment explanation
Indices: 25303722--25303985 Score: 397
Period size: 40 Copynumber: 6.6 Consensus size: 40
25303712 TTGAATGCTG
* * * * * *
25303722 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
25303762 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25303802 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25303842 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25303882 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25303922 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25303962 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25303986 GATTGTTAGA
Statistics
Matches: 209, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.00
40 200 0.96
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25310831 original size:40 final size:40
Alignment explanation
Indices: 25310748--25311085 Score: 431
Period size: 40 Copynumber: 8.6 Consensus size: 40
25310738 TTGAATGCTG
* * * * * *
25310748 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
25310788 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25310828 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25310868 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25310908 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25310948 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
25310988 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAG---TT--G
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25311023 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25311062 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25311086 TGAACGAGGA
Statistics
Matches: 269, Mismatches: 21, Indels: 17
0.88 0.07 0.06
Matches are distributed among these distances:
34 6 0.02
35 22 0.08
37 3 0.01
39 23 0.09
40 207 0.77
41 8 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25317801 original size:105 final size:105
Alignment explanation
Indices: 25317551--25317923 Score: 642
Period size: 105 Copynumber: 3.6 Consensus size: 105
25317541 TAACCGTTAT
* * **
25317551 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
25317616 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* *
25317655 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
25317719 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
25317760 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
25317825 AATCAGCACATAGCAACCCCCTTTTTACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
**
25317865 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
25317924 TTATATACAA
Statistics
Matches: 257, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
104 81 0.32
105 175 0.68
106 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:25318284 original size:29 final size:29
Alignment explanation
Indices: 25318251--25318314 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
25318241 TAATCCACCA
25318251 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
25318280 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
25318310 CCCAA
1 CCCAA
25318315 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:25318288 original size:30 final size:30
Alignment explanation
Indices: 25318258--25318314 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25318248 CCACCCAACT
25318258 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
25318287 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
25318315 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:25323099 original size:31 final size:31
Alignment explanation
Indices: 25323064--25323124 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
25323054 GAATTACGAA
25323064 GGATTATATGCTTGTATATCCCGAAAGAGAG
1 GGATTATATGCTTGTATATCCCGAAAGAGAG
* *
25323095 GGATTTTATGCTTGTGTATCCCGAAAGAGA
1 GGATTATATGCTTGTATATCCCGAAAGAGA
25323125 TCTTACTCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (31 bp):
GGATTATATGCTTGTATATCCCGAAAGAGAG
Found at i:25333724 original size:39 final size:39
Alignment explanation
Indices: 25333632--25333731 Score: 121
Period size: 39 Copynumber: 2.6 Consensus size: 39
25333622 AAAATCCTTG
*
25333632 TTATAATTATTGTAATTATAA-TTTACGATCAAATATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAAAATTA
* * * ** *
25333670 TTACAATGATTGTAATTGTAATTTTTTGGTCAAAAATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAAAATTA
*
25333709 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
25333732 ATAATATTTG
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
38 18 0.36
39 32 0.64
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (39 bp):
TTATAATTATTGTAATTATAATTTTACGATCAAAAATTA
Found at i:25337995 original size:22 final size:22
Alignment explanation
Indices: 25337961--25338004 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
25337951 CAAATTTGTG
* *
25337961 AAAATTTATTATAAAAATAATT
1 AAAATTAAATATAAAAATAATT
**
25337983 AAAATTAAATATATTAATAATT
1 AAAATTAAATATAAAAATAATT
25338005 TAAGAGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAAATATAAAAATAATT
Found at i:25358095 original size:50 final size:50
Alignment explanation
Indices: 25357981--25358311 Score: 346
Period size: 50 Copynumber: 6.6 Consensus size: 50
25357971 TGCCAAAGAT
** * * *
25357981 ATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC--TGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAATGCC
* * * * ** * * *
25358030 ATATCCCAAATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* *** * *
25358080 ATGTCCCAGGCATGGTCTTATGGGGGACCTCTCATCTTGGTGCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* *
25358130 ATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTCGGTGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* **
25358180 ATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTG-TTATCGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT-GCC
* *
25358230 ATG-CCCTAGACATGGTATTACATGGGACCTCTCATCTCGGTGCCAATTCC
1 ATGTCCC-AGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* *
25358280 ATGTCCCATACATGGTCTTACATGGGATCTCT
1 ATGTCCCAGACATGGTCTTACATGGGACCTCT
25358312 TTACCCAAAT
Statistics
Matches: 230, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
49 33 0.14
50 192 0.83
51 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (50 bp):
ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
Found at i:25358244 original size:150 final size:149
Alignment explanation
Indices: 25357981--25358306 Score: 388
Period size: 150 Copynumber: 2.2 Consensus size: 149
25357971 TGCCAAAGAT
* ** * * *
25357981 ATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTACTGCCAATGCCATATCCCAAATATGGT
1 ATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTACTGCCAATGCCATATCCCAAACATGGT
** * * **
25358046 CTTACATGAGAGTTCTCATATAGGTGCCCATGCCATGTCCCAGGCATGGTCTTATGGGGGACCTC
66 CTTACATGAGACCTCTCATATAGGTGCCCATGCCATGTCCCAGACATGGTATTACAGGGGACCTC
*
25358111 TCATCTTGGTGCCAACGCC
131 TCATCTCGGTGCCAACGCC
* *
25358130 ATGTCCCAAACATGGTCTTACATGGGACCTTTCATCT-CGGTGCCAATGCCATGTCCCAGACATG
1 ATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTAC--TGCCAATGCCATATCCCAAACATG
* * ** *
25358194 GTCTTACATGAGACCTCTCATCTCGGTG-TTATCGCCATG-CCCTAGACATGGTATTACATGGGA
64 GTCTTACATGAGACCTCTCATATAGGTGCCCAT-GCCATGTCCC-AGACATGGTATTACAGGGGA
**
25358257 CCTCTCATCTCGGTGCCAATTCC
127 CCTCTCATCTCGGTGCCAACGCC
*
25358280 ATGTCCCATACATGGTCTTACATGGGA
1 ATGTCCCAAACATGGTCTTACATGGGA
25358307 TCTCTTTACC
Statistics
Matches: 150, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
148 1 0.01
149 37 0.25
150 112 0.75
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (149 bp):
ATGTCCCAAACATGGTCTTACATGGGACCTTTCATCTACTGCCAATGCCATATCCCAAACATGGT
CTTACATGAGACCTCTCATATAGGTGCCCATGCCATGTCCCAGACATGGTATTACAGGGGACCTC
TCATCTCGGTGCCAACGCC
Found at i:25361939 original size:4 final size:5
Alignment explanation
Indices: 25361903--25361944 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
25361893 ATTATGTATT
25361903 TTGAA TTGAA TTGAA TTGAA -TGAA TATAGAA TT-AA TTGAA TT
1 TTGAA TTGAA TTGAA TTGAA TTGAA T-T-GAA TTGAA TTGAA TT
25361945 TTCTTATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
4 8 0.24
5 19 0.58
6 2 0.06
7 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (5 bp):
TTGAA
Found at i:25361942 original size:16 final size:15
Alignment explanation
Indices: 25361903--25361944 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
25361893 ATTATGTATT
25361903 TTGAATTGAATTGAA
1 TTGAATTGAATTGAA
25361918 TTGAA-TGAATATAGAA
1 TTGAATTGAAT-T-GAA
25361934 TT-AATTGAATT
1 TTGAATTGAATT
25361945 TTCTTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (15 bp):
TTGAATTGAATTGAA
Found at i:25362342 original size:41 final size:41
Alignment explanation
Indices: 25362275--25362360 Score: 127
Period size: 41 Copynumber: 2.1 Consensus size: 41
25362265 GCAGATACTT
* * *
25362275 GTCAGCTTGTGTGAGCGGCATGGTGTAGCTACATTCTGACC
1 GTCAACTTGTGTCAGCGGCATCGTGTAGCTACATTCTGACC
* *
25362316 GTCAACTTGTGTCAGCGGCATCGTGTAGCTACATTTTGACT
1 GTCAACTTGTGTCAGCGGCATCGTGTAGCTACATTCTGACC
25362357 GTCA
1 GTCA
25362361 GCTTTTGTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (41 bp):
GTCAACTTGTGTCAGCGGCATCGTGTAGCTACATTCTGACC
Found at i:25369370 original size:17 final size:17
Alignment explanation
Indices: 25369348--25369380 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25369338 GTTAGTGAAC
25369348 ATTGTCATTGAATTTTT
1 ATTGTCATTGAATTTTT
*
25369365 ATTGTCATTGCATTTT
1 ATTGTCATTGAATTTT
25369381 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGAATTTTT
Found at i:25374554 original size:13 final size:13
Alignment explanation
Indices: 25374536--25374571 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
25374526 CCAGCCCGCC
25374536 TATATTAATTTTT
1 TATATTAATTTTT
25374549 TATATT-A-TTTT
1 TATATTAATTTTT
25374560 TATA-TAATTTTT
1 TATATTAATTTTT
25374572 AAATATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.05
11 9 0.43
12 5 0.24
13 6 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATATTAATTTTT
Found at i:25374729 original size:30 final size:30
Alignment explanation
Indices: 25374695--25374756 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
25374685 CTTAACAAGT
25374695 AAATGCCTCTAAAATAAT-ATCAAAATTAAC
1 AAATGCCTCTAAAATAATAAT-AAAATTAAC
25374725 AAATGCCTCTAAAATAATAATAAAATTAAC
1 AAATGCCTCTAAAATAATAATAAAATTAAC
25374755 AA
1 AA
25374757 TAAAACAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAATAAAATTAAC
Found at i:25382467 original size:35 final size:35
Alignment explanation
Indices: 25382417--25382484 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
25382407 GATTTGCCAA
* *
25382417 ATAATTGCTAGGCTTTGCTAAATATATTTTGTCAT
1 ATAATTGCCAAGCTTTGCTAAATATATTTTGTCAT
*
25382452 ATAATTGCCAAGCTTTGCTAAGTATATTTTGTC
1 ATAATTGCCAAGCTTTGCTAAATATATTTTGTC
25382485 TATGATATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (35 bp):
ATAATTGCCAAGCTTTGCTAAATATATTTTGTCAT
Found at i:25387290 original size:41 final size:43
Alignment explanation
Indices: 25387241--25387363 Score: 119
Period size: 43 Copynumber: 2.9 Consensus size: 43
25387231 AACCGTTACT
* * *
25387241 CGGTGGAATCAGCATTTAGCAACCACCTT-ATATTC-AGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTCACAATCAAG-GATA
* *
25387283 CGG-GGAATCAACACATAGCAACC-CCTTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACC--TTCACAATCAAGGATA
* * *
25387326 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTCACAATCAA
25387364 TAATTTAGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
40 2 0.03
41 17 0.26
42 5 0.08
43 20 0.31
44 19 0.29
45 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTCACAATCAAGGATA
Found at i:25387362 original size:43 final size:44
Alignment explanation
Indices: 25387241--25387363 Score: 123
Period size: 44 Copynumber: 2.9 Consensus size: 44
25387231 AACCGTTACT
* * * *
25387241 CGGTGGAATCAGCATTTAGCAACCACC-TTATATTC-AGTGATA
1 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAAGTGATA
* *
25387283 CGG-GGAATCAA-CACATAGCAACC-CCTTTTCACAATCAAG-GATA
1 CGGTGGAAT-AAGCACTTAGCAACCACC-TTT-AAAATCAAGTGATA
25387326 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAA
1 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAA
25387364 TAATTTAGGG
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
40 2 0.03
41 15 0.23
42 6 0.09
43 20 0.30
44 21 0.32
45 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (44 bp):
CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAAGTGATA
Found at i:25387408 original size:26 final size:26
Alignment explanation
Indices: 25387371--25387420 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
25387361 CAATAATTTA
25387371 GGGAATCAACACTTAGCAACCCCTCG
1 GGGAATCAACACTTAGCAACCCCTCG
*
25387397 GGGAATCTACACTTAGCAACCCCT
1 GGGAATCAACACTTAGCAACCCCT
25387421 TTCTTATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (26 bp):
GGGAATCAACACTTAGCAACCCCTCG
Found at i:25387451 original size:41 final size:42
Alignment explanation
Indices: 25387394--25387504 Score: 147
Period size: 41 Copynumber: 2.7 Consensus size: 42
25387384 TAGCAACCCC
*
25387394 TCGGGGAATCTACACTTAGCAACCCCTTTCTT-ATTAGAG-TT
1 TCGGGGAATCTGCACTTAGCAACCCCTTT-TTGATTAGAGATT
* *
25387435 TCGGGGAACCTGCACTTAGCAACCCCTTTTTGATTAGTGATT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATTAGAGATT
*
25387477 TC-AGGATATCTGCACTTAGCAACCCCTT
1 TCGGGGA-ATCTGCACTTAGCAACCCCTT
25387505 ACATTCAATG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
40 2 0.03
41 36 0.58
42 24 0.39
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (42 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATTAGAGATT
Found at i:25395006 original size:42 final size:42
Alignment explanation
Indices: 25394911--25395023 Score: 124
Period size: 41 Copynumber: 2.7 Consensus size: 42
25394901 AGAATAAATA
* * *
25394911 ATTT-GGGGAATCTACACTTAGCAACCCCTTTTTGATTAGAG
1 ATTTAGGGGAATCTGCACTTAACAACCCCTTTTTGATCAGAG
* * *
25394952 -TTTCA-GAGAATCTGCACTTAACAACCCCTTTTTTATCAGTG
1 ATTT-AGGGGAATCTGCACTTAACAACCCCTTTTTGATCAGAG
* *
25394993 ATTTAGGGGAATCTGCACTCAACAACACCTT
1 ATTTAGGGGAATCTGCACTTAACAACCCCTT
25395024 ACATTCAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
40 3 0.05
41 31 0.53
42 25 0.42
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (42 bp):
ATTTAGGGGAATCTGCACTTAACAACCCCTTTTTGATCAGAG
Found at i:25402549 original size:148 final size:150
Alignment explanation
Indices: 25402221--25403022 Score: 1187
Period size: 148 Copynumber: 5.4 Consensus size: 150
25402211 TTTAGCCATT
* *
25402221 TGTTCGTGTTTTTTTCCTCAAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTATT
1 TGTTCGTATTTTTTTCC-CGAATTTTATTACTTTTAAAAAATATACTATTTTTTAA-TTTTTATT
* * *
25402286 TTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTCTTTTATAAATAAATTTAA
64 TTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAA
*
25402351 AAAAA--CTTATTTCGACCCTA
129 AAAAACCCTTATTTCGGCCCTA
* * ** *
25402371 TGTTCGTATTTTTATCCCAAATTTTATTACTTACAAAAAATATAGTATTTTTTAA-TTTT-TTTT
1 TGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTATTTT
*
25402434 ACATTATTTTAGTATATTATATTTTAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAA
66 ACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAA
25402499 AAACCCTTATTTCGGCCCTA
131 AAACCCTTATTTCGGCCCTA
** * *
25402519 TGTTCGTATTTTTTTCTTGGATTTTATTACTTTTAAAAAATATACTATTTTTAAATTTTTTATTT
1 TGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTTTAA-TTTTTATTT
* * *
25402584 TACACTATTTTAGTATATTATATTCGAAATGTAATAATTTA--GT-TTTTTTAAATAAATTTAAA
65 TACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAA
*
25402646 AAAACCCTTATTTCGACCCTA
130 AAAACCCTTATTTCGGCCCTA
25402667 TGTTCGT-TTTTTTTCCCGAATTTTATTACTTTT-AAAAATATACTATTTTTTAATTTTTTAATT
1 TGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTTTAA-TTTTT-ATT
* *
25402730 TTACATTATTTTAGTATATTA-ATTTGAAATGTATTAATTTAGTTTG-TTTTTAAATAAATTTTA
64 TTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAA
*
25402793 AAAAACCCATATTTCGGCCCTA
129 AAAAACCCTTATTTCGGCCCTA
*
25402815 TGTTCGTA-TTTTTTCCTGAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTTTAT
1 TGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTTTAA---TTTTTAT
25402879 TTTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTT
63 TTTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAA--TT
*
25402944 TAAAAAAAACCCTTATTTTGGCCCTA
126 T-AAAAAAACCCTTATTTCGGCCCTA
*
25402970 TGTTCGTATTTTTTCCCCGAATTTTATTACTTTTAAAAAATATACTATTTTTT
1 TGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTTT
25403023 TTAATTTAGA
Statistics
Matches: 591, Mismatches: 42, Indels: 32
0.89 0.06 0.05
Matches are distributed among these distances:
146 111 0.19
147 50 0.08
148 174 0.29
149 57 0.10
150 43 0.07
151 70 0.12
152 12 0.02
154 3 0.01
155 29 0.05
156 42 0.07
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.52
Consensus pattern (150 bp):
TGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTATTTT
ACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAA
AAACCCTTATTTCGGCCCTA
Found at i:25402762 original size:297 final size:294
Alignment explanation
Indices: 25402221--25403022 Score: 1200
Period size: 297 Copynumber: 2.7 Consensus size: 294
25402211 TTTAGCCATT
* * *
25402221 TGTTCGTGTTTTTTTCCTCAAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTATT
1 TGTTCGT-ATTTTTTCCT-GAATTTTATTACTTTTAAAAAATATACTATTTTTAAATTTTTTATT
*
25402286 TTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTCTTTTATAAATAAATTTAA
64 TTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGT-TTTT-TAAATAAATTTAA
* * **
25402351 AAAAA--CTTATTTCGACCCTATGTTCGTATTTTTATCCCAAATTTTATTACTTACAAAAAATAT
127 AAAAACCCTTATTTCGACCCTATGTTCGTATTTTTTTCCCGAATTTTATTACTT-TTAAAAATAT
* *
25402414 AGTATTTTTTAATTTTTTTTACATTATTTTAGTATATTATATTTTAAATGTATTAATTTAGTGTG
191 ACTATTTTTTAATTTTTTTTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTG
*
25402479 TTTTTTAAATAAATTTAAAAAAACCCTTATTTCGGCCCTA
256 -TTTTTAAATAAATTTAAAAAAACCCATATTTCGGCCCTA
* *
25402519 TGTTCGTATTTTTTTCTTGGATTTTATTACTTTTAAAAAATATACTATTTTTAAATTTTTTATTT
1 TGTTCGTA-TTTTTTCCTGAATTTTATTACTTTTAAAAAATATACTATTTTTAAATTTTTTATTT
* * *
25402584 TACACTATTTTAGTATATTATATTCGAAATGTAATAATTTAGT-TTTTTTAAATAAATTTAAAAA
65 TACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTTTTTTAAATAAATTTAAAAA
25402648 AACCCTTATTTCGACCCTATGTTCGT-TTTTTTTCCCGAATTTTATTACTTTTAAAAATATACTA
130 AACCCTTATTTCGACCCTATGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAATATACTA
*
25402712 TTTTTTAATTTTTTAATTTTACATTATTTTAGTATATTA-ATTTGAAATGTATTAATTTAGTTTG
195 TTTTTTAA--TTTT--TTTTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTG
*
25402776 TTTTTAAATAAATTTTAAAAAACCCATATTTCGGCCCTA
256 TTTTTAAATAAATTTAAAAAAACCCATATTTCGGCCCTA
*
25402815 TGTTCGTATTTTTTCCTGAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTTTATT
1 TGTTCGTATTTTTTCCTGAATTTTATTACTTTTAAAAAATATACTA-TTTTTAA-ATTTTTTATT
25402880 TTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTTT
64 TTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTA--GTGTTTTTTAAATAAA--TTT
* * *
25402945 AAAAAAAACCCTTATTTTGGCCCTATGTTCGTATTTTTTCCCCGAATTTTATTACTTTTAAAAAA
125 -AAAAAAACCCTTATTTCGACCCTATGTTCGTATTTTTTTCCCGAATTTTATTACTTTT-AAAAA
25403010 TATACTATTTTTT
188 TATACTATTTTTT
25403023 TTAATTTAGA
Statistics
Matches: 460, Mismatches: 27, Indels: 27
0.89 0.05 0.05
Matches are distributed among these distances:
294 37 0.08
295 62 0.13
296 79 0.17
297 154 0.33
298 38 0.08
299 2 0.00
300 13 0.03
302 3 0.01
303 29 0.06
304 25 0.05
305 18 0.04
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.52
Consensus pattern (294 bp):
TGTTCGTATTTTTTCCTGAATTTTATTACTTTTAAAAAATATACTATTTTTAAATTTTTTATTTT
ACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTTTTTTAAATAAATTTAAAAAA
ACCCTTATTTCGACCCTATGTTCGTATTTTTTTCCCGAATTTTATTACTTTTAAAAATATACTAT
TTTTTAATTTTTTTTACATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTT
AAATAAATTTAAAAAAACCCATATTTCGGCCCTA
Found at i:25403876 original size:19 final size:19
Alignment explanation
Indices: 25403839--25403876 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
25403829 TTTTTTTGTA
*
25403839 TATTATTTTTGTACTTTTT
1 TATTATTTTTGTAATTTTT
*
25403858 TATT-TTTTTGTAATATTT
1 TATTATTTTTGTAATTTTT
25403876 T
1 T
25403877 GGTAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (19 bp):
TATTATTTTTGTAATTTTT
Found at i:25417872 original size:16 final size:16
Alignment explanation
Indices: 25417851--25417901 Score: 77
Period size: 17 Copynumber: 3.2 Consensus size: 16
25417841 TTATTTCTTC
25417851 TTTTTAGTTTAGTTTG
1 TTTTTAGTTTAGTTTG
*
25417867 TTTTTAGTTTTAATTTG
1 TTTTTAG-TTTAGTTTG
25417884 TTTTT-GTTTAGTTTG
1 TTTTTAGTTTAGTTTG
25417899 TTT
1 TTT
25417902 AAGGACAAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
15 11 0.34
16 8 0.25
17 13 0.41
ACGTcount: A:0.12, C:0.00, G:0.16, T:0.73
Consensus pattern (16 bp):
TTTTTAGTTTAGTTTG
Found at i:25419815 original size:21 final size:21
Alignment explanation
Indices: 25419785--25419832 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
25419775 ATCGAACTTT
* *
25419785 TTAAACCTTCTAGA-TTGCTTC
1 TTAAAGCTTCTA-ACTTGATTC
25419806 TTAAAGCTTCTAACTTGATTC
1 TTAAAGCTTCTAACTTGATTC
25419827 TTAAAG
1 TTAAAG
25419833 TCCTTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (21 bp):
TTAAAGCTTCTAACTTGATTC
Found at i:25424490 original size:50 final size:50
Alignment explanation
Indices: 25424415--25424967 Score: 442
Period size: 50 Copynumber: 11.0 Consensus size: 50
25424405 TTTTGTCTGG
* * *
25424415 CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* ** * * * * **
25424465 CTGCACCACCAGGAAAGTAAGATTCGTCGTTGTGGCTTTAATCTTTTTTAA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATC-TGTTCCA
* * * * *
25424516 CTACAATGTCGGGGAAGCAAGATTTGCCATTGTGGCTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* * * * * * * * * **
25424566 CTGCACCGTCTGGAAAGTAGGACTCGTCGTTGTGGCTTTAGTCTTTTTAA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* *
25424616 CTGCAATGTCAGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* * * * * * * * **
25424666 CTACACCGCCAGGGAAGTAAGACTCGCTGTTGTGGCTTTAGTCTCTTTAA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* * *
25424716 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* * * * * * * ** * **
25424766 CTGCACCGCCTGGAAAGTAAGACTCGTCGTTGTGGCTTTCGTCTTTTTAA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* ** *
25424816 CTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
* * ** * **
25424866 CTGCACCG-CTAGGGAAGAAAGATTTACCGTTGTGGCTTTAATCTTTTTAA
1 CTGCAACGTC-AGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
** * * *
25424916 CTATAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
25424966 CT
1 CT
25424968 ACATCGCCTG
Statistics
Matches: 371, Mismatches: 129, Indels: 6
0.73 0.25 0.01
Matches are distributed among these distances:
50 334 0.90
51 37 0.10
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (50 bp):
CTGCAACGTCAGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
Found at i:25424989 original size:100 final size:100
Alignment explanation
Indices: 25424415--25424987 Score: 817
Period size: 100 Copynumber: 5.7 Consensus size: 100
25424405 TTTTGTCTGG
* * *
25424415 CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCACCAGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
* *
25424480 AGTAAGATTCGTCGTTGTGGCTTTAATCTTTTTTAA
66 AGTAAGACTCGTCGTTGTGGCTTTAGTC-TTTTTAA
* * * *
25424516 CTACAATGTCGGGGAAGCAAGATTTGCCATTGTGGCTTTAATCTGTTCCACTGCACCGTCTGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
*
25424581 AGTAGGACTCGTCGTTGTGGCTTTAGTCTTTTTAA
66 AGTAAGACTCGTCGTTGTGGCTTTAGTCTTTTTAA
* * * * *
25424616 CTGCAATGTCAGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTGTTCCACTACACCGCCAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
*
25424681 AGTAAGACTCG-CTGTTGTGGCTTTAGTCTCTTTAA
66 AGTAAGACTCGTC-GTTGTGGCTTTAGTCTTTTTAA
*
25424716 CTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
*
25424781 AGTAAGACTCGTCGTTGTGGCTTTCGTCTTTTTAA
66 AGTAAGACTCGTCGTTGTGGCTTTAGTCTTTTTAA
* * *
25424816 CTGCAATGTTGGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTGTTCCACTGCACCG-CTAGGG
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT-GGA
* * *** *
25424880 AAGAAAGATTTACCGTTGTGGCTTTAATCTTTTTAA
65 AAGTAAGACTCGTCGTTGTGGCTTTAGTCTTTTTAA
** * * *
25424916 CTATAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACATCGCCTGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
25424981 AGTAAGA
66 AGTAAGA
25424988 TTCAACTTAC
Statistics
Matches: 421, Mismatches: 47, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
99 3 0.01
100 332 0.79
101 86 0.20
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (100 bp):
CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAA
AGTAAGACTCGTCGTTGTGGCTTTAGTCTTTTTAA
Found at i:25425239 original size:44 final size:44
Alignment explanation
Indices: 25425191--25425285 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
25425181 TACTGTTTAA
*
25425191 GGAGATAAGACCTGTAAT-TTCCAACATATTCCACTGCTGACCAG
1 GGAGATAAGACCTGTAATCTT-CAACATATTCCACTGCTAACCAG
* * *
25425235 GGAGATAAGACTTGTCATCTTCAACCTATTCCACTGCTAACCAG
1 GGAGATAAGACCTGTAATCTTCAACATATTCCACTGCTAACCAG
25425279 GGAGATA
1 GGAGATA
25425286 GAGTTACTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 44 0.96
45 2 0.04
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (44 bp):
GGAGATAAGACCTGTAATCTTCAACATATTCCACTGCTAACCAG
Found at i:25425457 original size:132 final size:132
Alignment explanation
Indices: 25425233--25425908 Score: 919
Period size: 132 Copynumber: 5.1 Consensus size: 132
25425223 ACTGCTGACC
** * * *
25425233 AGGGAGATAAGA-CTTGTCATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGAGTTACTGGC
1 AGGGAGATAAGATC-TGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGC
*
25425297 TTCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACTA
65 TTCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTA
25425362 CTT
130 CTT
* * * *
25425365 AGGGAGATAAGATCTAAAATCTTCAATCTATTCCATTGCTGCCCAGGGA-AGTAGAATTATTGGC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGA-TAGAATTACTGGC
* * * * *
25425429 TTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCTACTACTA
65 TTCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTA
25425494 CTT
130 CTT
* * * *
25425497 AGGGAGATGAGATCTGAAATCCTCAATCTATTCCATTGCTGACCAGGGAGATAGAATTATTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCT
* * * *
25425562 TCAATGTACTCCACTATAACCTCAGGGAGGTAAAACCCACCATCTTCAATCTGA-TCCACTACTT
66 TCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCT-ACTCCACTACTA
25425626 CTT
130 CTT
* ** * * ***
25425629 AGGGAGATAAGATCTGTAAT-TTCTAGCCTATTCCACTACTGACCAAGGAGATAGGGCTACTGGC
1 AGGGAGATAAGATCTGAAATCTTC-AATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGC
* * * *
25425693 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTG
65 TTCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTA
25425758 CTT
130 CTT
* * *
25425761 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCT
* *
25425826 TCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGC
66 TCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTAC
25425891 TT
131 TT
*
25425893 AGGGAGATAATATCTG
1 AGGGAGATAAGATCTG
25425909 CTATCTCCGA
Statistics
Matches: 476, Mismatches: 61, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
131 3 0.01
132 469 0.99
133 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (132 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCT
TCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTAC
TT
Found at i:25425776 original size:44 final size:44
Alignment explanation
Indices: 25425714--25425924 Score: 156
Period size: 44 Copynumber: 4.8 Consensus size: 44
25425704 CCACTGTAAC
* *
25425714 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTG
1 CTCAGGGAGATAAAATCTGCCATCTTCGATCTACTCCACTACTG
* * ** ** * *
25425758 CTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTG
1 CTCAGGGAGATAAAATCTGCCATCTTCGATCTACTCCACTACTG
* * * *** * * *
25425802 CCCAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTA-TAAC
1 CTCAGGGAGATAAAATCTGCCATCTTCGATCTACTCCACTACT--G
* **
25425846 CTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTG
1 CTCAGGGAGATAAAATCTGCCATCTTCGATCTACTCCACTACTG
* * * *
25425890 CTTAGGGAGATAATATCTGCTATCTCCGATCTACT
1 CTCAGGGAGATAAAATCTGCCATCTTCGATCTACT
25425925 TCGCCACAAG
Statistics
Matches: 122, Mismatches: 41, Indels: 8
0.71 0.24 0.05
Matches are distributed among these distances:
42 1 0.01
43 15 0.12
44 87 0.71
45 18 0.15
46 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (44 bp):
CTCAGGGAGATAAAATCTGCCATCTTCGATCTACTCCACTACTG
Found at i:25425954 original size:45 final size:45
Alignment explanation
Indices: 25425904--25426222 Score: 254
Period size: 45 Copynumber: 7.2 Consensus size: 45
25425894 GGGAGATAAT
* * *
25425904 ATCTGCTATCTCCGATCTACTTCGCCACAAGTATGGGAAGACAAT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* * ***
25425949 ATCTGCTATC-TCTGATCTTCTTTACGTCA--A-TACATGAAGACAAG
1 ATCTGCTATCTTC-GATCTAC-TT-CGCCACCAGTATGGGAAGACAAG
* * ** * **
25425993 ATCTGCTATATTTGATCTACTTCGCTGCTAGTACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* * *
25426038 ATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAA
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* ** * * **
25426083 ATCTGCTATC-TCGATGTTTTTCACCACCAGTATGGGACGATGAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* *** ***
25426127 ATCTGCTATCTTCGATCCACTTC-ATGCCAGTACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* *
25426171 ATCTGCTTTCTTCGATCAACTTCGCCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
*
25426216 ACCTGCT
1 ATCTGCT
25426223 GCTTTTCAAC
Statistics
Matches: 209, Mismatches: 56, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 96 0.46
45 103 0.49
46 2 0.01
47 4 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
Found at i:25426222 original size:89 final size:89
Alignment explanation
Indices: 25425904--25426222 Score: 300
Period size: 89 Copynumber: 3.6 Consensus size: 89
25425894 GGGAGATAAT
* * * *
25425904 ATCTGCTATCTCCGATCTACTTCGCCACAAGTATGGGAAGACAATATCTGCTATC-TCTGATCTT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTC-GATCTA
* * *
25425968 CTTTACGTCAATACATGAAGACAAG
65 CTTCACGCCAGTACATGAAGACAAG
* * ** * ** * *
25425993 ATCTGCTATATTTGATCTACTTCGCTGCTAGTACAGGAAGACAAGATCTGTTTTCTTCGATCTAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTAC
* * *** *
25426058 TTCGCCACCAGTATGGGAAGACAAA
66 TTC-ACGCCAGTACATGAAGACAAG
* ** * * ** *
25426083 ATCTGCTATC-TCGATGTTTTTCACCACCAGTATGGGACGATGAGATCTGCTATCTTCGATCCAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTAC
*
25426147 TTCATGCCAGTACATGAAGACAAG
66 TTCACGCCAGTACATGAAGACAAG
* * *
25426171 ATCTGCTTTCTTCGATCAACTTCGCCACCAGTATGGGAAGACAAGACCTGCT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCT
25426223 GCTTTTCAAC
Statistics
Matches: 172, Mismatches: 55, Indels: 6
0.74 0.24 0.03
Matches are distributed among these distances:
88 23 0.13
89 125 0.73
90 24 0.14
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (89 bp):
ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTAC
TTCACGCCAGTACATGAAGACAAG
Found at i:25427530 original size:7 final size:7
Alignment explanation
Indices: 25427509--25427559 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
25427499 CCTTAGCCTC
25427509 TTCATTT
1 TTCATTT
25427516 TT-ACTTT
1 TTCA-TTT
25427523 TTCATTT
1 TTCATTT
25427530 TTCA-TT
1 TTCATTT
*
25427536 TTCTTTT
1 TTCATTT
25427543 TTCATTT
1 TTCATTT
25427550 TTCATATT
1 TTCAT-TT
25427558 TT
1 TT
25427560 TTCTGACTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 6 0.16
7 27 0.71
8 5 0.13
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCATTT
Found at i:25427537 original size:13 final size:13
Alignment explanation
Indices: 25427509--25427550 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
25427499 CCTTAGCCTC
*
25427509 TTCATTTTTACTTT
1 TTCATTTTT-CATT
25427523 TTCATTTTTCATT
1 TTCATTTTTCATT
*
25427536 TTCTTTTTTCATT
1 TTCATTTTTCATT
25427549 TT
1 TT
25427551 TCATATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (13 bp):
TTCATTTTTCATT
Found at i:25428456 original size:12 final size:12
Alignment explanation
Indices: 25428429--25428549 Score: 55
Period size: 12 Copynumber: 9.8 Consensus size: 12
25428419 TTTTTCTCCT
**
25428429 TTTTTATTTTCT
1 TTTTTATTTTGA
25428441 TTTTTATTTTGA
1 TTTTTATTTTGA
*
25428453 TTTTTCATTTTTCA
1 TTTTT-A-TTTTGA
* *
25428467 TTTTTCCTTTTTA
1 TTTTT-ATTTTGA
*
25428480 CTTTTACTTTTGA
1 TTTTTA-TTTTGA
* * **
25428493 CTTTGATTTTTC
1 TTTTTATTTTGA
* **
25428505 TTTTTCTTTTTC
1 TTTTTATTTTGA
*
25428517 TTCTT-TTTTGA
1 TTTTTATTTTGA
*
25428528 TTTTGATTTTGA
1 TTTTTATTTTGA
*
25428540 TTTTGATTTT
1 TTTTTATTTT
25428550 TTTATTGAAT
Statistics
Matches: 86, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
11 7 0.08
12 48 0.56
13 20 0.23
14 11 0.13
ACGTcount: A:0.11, C:0.10, G:0.06, T:0.74
Consensus pattern (12 bp):
TTTTTATTTTGA
Found at i:25428531 original size:6 final size:6
Alignment explanation
Indices: 25428522--25428549 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
25428512 TTTTCTTCTT
25428522 TTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTT
25428550 TTTATTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:25429375 original size:25 final size:25
Alignment explanation
Indices: 25429328--25429384 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
25429318 AAAGTCCAAT
*
25429328 AGAATGAAAGAATAATTATTCAAAA
1 AGAATGAAAGAATAATTACTCAAAA
*
25429353 AGAATGAAAGAAT-ATTGGCTCAAAA
1 AGAATGAAAGAATAATT-ACTCAAAA
25429378 ATGAATG
1 A-GAATG
25429385 CAAATATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 3 0.11
25 20 0.71
26 5 0.18
ACGTcount: A:0.54, C:0.05, G:0.18, T:0.23
Consensus pattern (25 bp):
AGAATGAAAGAATAATTACTCAAAA
Found at i:25439055 original size:25 final size:27
Alignment explanation
Indices: 25439027--25439081 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
25439017 TCAAAAATAT
25439027 TTTTTC-ACAATA-TTTTTAAAAGCAC
1 TTTTTCTACAATATTTTTTAAAAGCAC
*
25439052 -TTTTCTACTATATTTTTTAAAAGCAC
1 TTTTTCTACAATATTTTTTAAAAGCAC
25439078 TTTT
1 TTTT
25439082 CAAAAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 5 0.19
25 5 0.19
26 13 0.50
27 3 0.12
ACGTcount: A:0.31, C:0.15, G:0.04, T:0.51
Consensus pattern (27 bp):
TTTTTCTACAATATTTTTTAAAAGCAC
Found at i:25440891 original size:29 final size:29
Alignment explanation
Indices: 25440842--25440914 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 29
25440832 AATAAAAATC
* * *
25440842 AATAAAATTTATAAATTTA-TTAAATTTA
1 AATAAAAATTAAAAATATATTTAAATTTA
*
25440870 AATAAAAATATAAAAATATATTTAAATTTT
1 AATAAAAAT-TAAAAATATATTTAAATTTA
*
25440900 ATTAAAAATTAAAAA
1 AATAAAAATTAAAAA
25440915 AACTATAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
28 8 0.21
29 14 0.37
30 16 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (29 bp):
AATAAAAATTAAAAATATATTTAAATTTA
Found at i:25440933 original size:19 final size:18
Alignment explanation
Indices: 25440902--25441003 Score: 66
Period size: 19 Copynumber: 5.5 Consensus size: 18
25440892 TAAATTTTAT
25440902 TAAAAATTAAAAAAACT-A
1 TAAAAATTAAAAAAA-TAA
*
25440920 TAAAAATCTTAAAAAATAA
1 TAAAAAT-TAAAAAAATAA
** *
25440939 TAAAAATTGAAAAATTTTA
1 TAAAAATT-AAAAAAATAA
**
25440958 TAAAAATTGTTAAAAAT-A
1 TAAAAATT-AAAAAAATAA
*
25440976 T-AAAATATAGAAAAAATTA
1 TAAAAAT-TA-AAAAAATAA
25440995 TAAAAATTA
1 TAAAAATTA
25441004 TCGTACAAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 13
0.73 0.12 0.14
Matches are distributed among these distances:
17 5 0.08
18 18 0.27
19 38 0.58
20 5 0.08
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (18 bp):
TAAAAATTAAAAAAATAA
Found at i:25441002 original size:37 final size:37
Alignment explanation
Indices: 25440904--25441002 Score: 107
Period size: 38 Copynumber: 2.7 Consensus size: 37
25440894 AATTTTATTA
*
25440904 AAAAT-TA-AAAAAACTATAAAAATCTTAAAAAATAAT
1 AAAATATAGAAAAAATTATAAAAAT-TTAAAAAATAAT
* * *
25440940 AAAA-ATTGAAAAATTTTATAAAAATTGTTAAAAAT-AT
1 AAAATATAGAAAAA-ATTATAAAAATT-TAAAAAATAAT
25440977 AAAATATAGAAAAAATTATAAAAATT
1 AAAATATAGAAAAAATTATAAAAATT
25441003 ATCGTACAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
36 5 0.10
37 23 0.44
38 24 0.46
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (37 bp):
AAAATATAGAAAAAATTATAAAAATTTAAAAAATAAT
Found at i:25441003 original size:9 final size:9
Alignment explanation
Indices: 25440818--25441004 Score: 64
Period size: 9 Copynumber: 20.0 Consensus size: 9
25440808 ACATATAGCA
*
25440818 AAAAATGAT
1 AAAAATTAT
*
25440827 AAAAA-AAT
1 AAAAATTAT
*
25440835 AAAAATCAAT
1 AAAAAT-TAT
*
25440845 AAAATTTAT
1 AAAAATTAT
*
25440854 -AAATTTAT
1 AAAAATTAT
* *
25440862 TAAATTTAAAT
1 AAAAATT--AT
25440873 AAAAA-TAT
1 AAAAATTAT
25440881 AAAAATATATTT
1 AAAAAT-TA--T
**
25440893 AAATTTTATT
1 AAAAATTA-T
*
25440903 AAAAATTAA
1 AAAAATTAT
*
25440912 AAAAACTAT
1 AAAAATTAT
25440921 AAAAATCT-T
1 AAAAAT-TAT
*
25440930 AAAAAATAAT
1 -AAAAATTAT
25440940 AAAAATTGA-
1 AAAAATT-AT
*
25440949 AAAATTTTAT
1 AAAA-ATTAT
*
25440959 AAAAATTGTT
1 AAAAATT-AT
25440969 AAAAA-TAT
1 AAAAATTAT
*
25440977 -AAAATATAGA
1 AAAAAT-TA-T
25440987 AAAAATTAT
1 AAAAATTAT
25440996 AAAAATTAT
1 AAAAATTAT
25441005 CGTACAAAAA
Statistics
Matches: 137, Mismatches: 21, Indels: 40
0.69 0.11 0.20
Matches are distributed among these distances:
7 4 0.03
8 23 0.17
9 51 0.37
10 42 0.31
11 12 0.09
12 5 0.04
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:25441182 original size:11 final size:10
Alignment explanation
Indices: 25441168--25441278 Score: 62
Period size: 9 Copynumber: 11.7 Consensus size: 10
25441158 GTTAAAGGAC
25441168 ATTTTTTATA
1 ATTTTTTATA
25441178 CA--TTTTATA
1 -ATTTTTTATA
25441187 ATTTCTTTAATA
1 ATTT-TTT-ATA
*
25441199 ATTTTTTATT
1 ATTTTTTATA
25441209 A-TTTTTAT-
1 ATTTTTTATA
25441217 A-TTTTTATTA
1 ATTTTTTA-TA
**
25441227 AAATTTTAT-
1 ATTTTTTATA
25441236 ATTTTTTATA
1 ATTTTTTATA
*
25441246 A--CTTT-TA
1 ATTTTTTATA
* *
25441253 ATTATTTCT-
1 ATTTTTTATA
25441262 ATTTTTTATA
1 ATTTTTTATA
25441272 ATTTTTT
1 ATTTTTT
25441279 TACCACATGC
Statistics
Matches: 80, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
7 3 0.04
8 11 0.14
9 32 0.40
10 15 0.19
11 12 0.15
12 7 0.09
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:25441223 original size:17 final size:18
Alignment explanation
Indices: 25441201--25441241 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
25441191 CTTTAATAAT
*
25441201 TTTTTATT-ATTTTTATA
1 TTTTTATTAAATTTTATA
25441218 TTTTTATTAAAATTTTATA
1 TTTTTATT-AAATTTTATA
25441237 TTTTT
1 TTTTT
25441242 TATAACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
19 13 0.62
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTATTAAATTTTATA
Found at i:25441242 original size:20 final size:18
Alignment explanation
Indices: 25441199--25441278 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 18
25441189 TTCTTTAATA
*
25441199 ATTTTTTATTATTTTTAT
1 ATTTTTTATTAATTTTAT
25441217 A-TTTTTATTAAAATTTTAT
1 ATTTTTTATT--AATTTTAT
25441236 ATTTTTTA-TAACTTTTA-
1 ATTTTTTATTAA-TTTTAT
25441253 ATTATTTCTATT--TTTTAT
1 ATT-TTT-TATTAATTTTAT
25441271 AATTTTTT
1 -ATTTTTT
25441279 TACCACATGC
Statistics
Matches: 52, Mismatches: 1, Indels: 19
0.72 0.01 0.26
Matches are distributed among these distances:
17 19 0.37
18 12 0.23
19 14 0.27
20 7 0.13
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTTTTATTAATTTTAT
Found at i:25441253 original size:26 final size:26
Alignment explanation
Indices: 25441227--25441277 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25441217 ATTTTTATTA
25441227 AAAT-TTTATATTTTTTATAACTTTT
1 AAATATTTATATTTTTTATAACTTTT
* * *
25441252 AATTATTTCTATTTTTTATAATTTTT
1 AAATATTTATATTTTTTATAACTTTT
25441278 TTACCACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (26 bp):
AAATATTTATATTTTTTATAACTTTT
Found at i:25441280 original size:28 final size:29
Alignment explanation
Indices: 25441171--25441280 Score: 95
Period size: 30 Copynumber: 3.9 Consensus size: 29
25441161 AAAGGACATT
** *
25441171 TTTTATACATTTTATAATTTCTTTAATAA
1 TTTTATATTTTTTATAATTTTTTTAATAA
*
25441200 TTTTTTATTATTTT-TATATTTTTATTAA-AA
1 TTTTATATT-TTTTATA-ATTTTT-TTAATAA
* *
25441230 TTTTATATTTTTTATAA--CTTTTAATTA
1 TTTTATATTTTTTATAATTTTTTTAATAA
*
25441257 -TTTCTATTTTTTATAATTTTTTTA
1 TTTTATATTTTTTATAATTTTTTTA
25441281 CCACATGCCA
Statistics
Matches: 65, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
26 19 0.29
27 3 0.05
28 5 0.08
29 13 0.20
30 21 0.32
31 4 0.06
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTATATTTTTTATAATTTTTTTAATAA
Found at i:25441751 original size:25 final size:25
Alignment explanation
Indices: 25441717--25441768 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
25441707 AGAAAGAAAA
25441717 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCTGTGATTGAACATTTAC
25441742 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCTGTGATTGAACATTTAC
25441767 TT
1 TT
25441769 ACTATTGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (25 bp):
TTTCAATCTGTGATTGAACATTTAC
Found at i:25443147 original size:6 final size:6
Alignment explanation
Indices: 25443133--25443163 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
25443123 CCCTAACCCA
*
25443133 TCACAG TCACCG TCACCG TCACCG TCACCG T
1 TCACCG TCACCG TCACCG TCACCG TCACCG T
25443164 TACTGAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.45, G:0.16, T:0.19
Consensus pattern (6 bp):
TCACCG
Found at i:25443375 original size:18 final size:19
Alignment explanation
Indices: 25443354--25443389 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25443344 ATTGAAACAA
*
25443354 AACAT-AAAATTTTAGAAC
1 AACATGAAAATTTGAGAAC
25443372 AACATGAAAATTTGAGAA
1 AACATGAAAATTTGAGAA
25443390 ACAGGGGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.56, C:0.08, G:0.11, T:0.25
Consensus pattern (19 bp):
AACATGAAAATTTGAGAAC
Found at i:25445662 original size:50 final size:50
Alignment explanation
Indices: 25445544--25445790 Score: 219
Period size: 50 Copynumber: 4.8 Consensus size: 50
25445534 GATAATAACA
* * * ** * * *
25445544 TGCCAAAGACATGTCCCAAACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * **
25445593 TGCCAATGCCATATCCCAGATATGGTCTTACATGGAAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *** *
25445643 TGCCCATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCATTTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
25445693 TGCCAATGCCATGTCCCAAAAATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
25445749 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
25445791 TTGTCCAAAT
Statistics
Matches: 158, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 36 0.23
50 79 0.50
53 2 0.01
56 40 0.25
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:25445725 original size:100 final size:103
Alignment explanation
Indices: 25445593--25445778 Score: 252
Period size: 100 Copynumber: 1.8 Consensus size: 103
25445583 TTTCTTGTAC
* * ** * *
25445593 TGCCAATGCCATATCCCAGATATGGTCTTACATGGAAGTTCTCAT-A-TC-GGTGCCCATGCCAT
1 TGCCAATGCCATATCCCAAAAATGGTCTTACATGGAACCTCTCATAACTCAGATGCCAATGCCAT
25445655 GTCCCAGACATGGTCTTATGGGGGACCTCTCATTTCGG
66 GTCCCAGACATGGTCTTATGGGGGACCTCTCATTTCGG
* *
25445693 TGCCAATGCCATGTCCCAAAAATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 TGCCAATGCCATATCCCAAAAATGGTCTTACATGGAACCTCTCATAA-CTC-A-GATGCCAATGC
25445758 CATGTCCCAGACATGGTCTTA
63 CATGTCCCAGACATGGTCTTA
25445779 CATGGGATCT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
100 39 0.54
101 1 0.01
103 2 0.03
106 30 0.42
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (103 bp):
TGCCAATGCCATATCCCAAAAATGGTCTTACATGGAACCTCTCATAACTCAGATGCCAATGCCAT
GTCCCAGACATGGTCTTATGGGGGACCTCTCATTTCGG
Found at i:25463831 original size:50 final size:50
Alignment explanation
Indices: 25463703--25463893 Score: 172
Period size: 50 Copynumber: 3.8 Consensus size: 50
25463693 GATAATAAAA
* ** * ** *
25463703 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTTTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATAT-CGG
* * * * **
25463752 TACCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTAATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATATCGG
* * ** * *
25463802 TGCTC-ATGCTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGC-CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATATCGG
25463852 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
25463894 TTACCCAAAT
Statistics
Matches: 114, Mismatches: 24, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 38 0.33
50 74 0.65
51 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTAATATCGG
Found at i:25465246 original size:5 final size:5
Alignment explanation
Indices: 25465236--25465267 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
25465226 CCATAGTCAA
25465236 AATTT AATTT AATTT AATTT AATTT AATTT AA
1 AATTT AATTT AATTT AATTT AATTT AATTT AA
25465268 CTTACCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
AATTT
Found at i:25467231 original size:10 final size:10
Alignment explanation
Indices: 25467205--25467234 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
25467195 ATCTCAATTT
*
25467205 CACACACACA
1 CACACATACA
25467215 CACACATACA
1 CACACATACA
25467225 CACACATACA
1 CACACATACA
25467235 TTCAACACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.50, C:0.43, G:0.00, T:0.07
Consensus pattern (10 bp):
CACACATACA
Found at i:25476614 original size:91 final size:90
Alignment explanation
Indices: 25476466--25477556 Score: 576
Period size: 89 Copynumber: 12.3 Consensus size: 90
25476456 GTTTTAATTC
* * * * * *
25476466 GCTCCACTGCAACTTCAGGGGGATAGGATTAGT--TTCTTCAATCTGCTTCGCCGCCAATATAGG
1 GCTCCACTGCAACTT-AGGGAGATAAGATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGG
* **
25476529 AAGGCAAGATCTACTGTTTTTAGTCT
65 AAGGCAAGATCTACTATTTTTAACCT
*
25476555 GCTCCACTGCAAACTTAGGGAGATAAGATTTGTGGTTTTTCGATCTGCTTCGCTGCCAATACAGG
1 GCTCCACTGC-AACTTAGGGAGATAAGATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGG
**
25476620 AAGGCAAGATCTGTTATTTTTAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* * ** * ** * *
25476646 ACTCCACTACTGCTCAGGGAGATAAGGCTTG-GG-TCTTCGATCTACTTCACTGCCAATACAGGA
1 GCTCCACTGCAACTTAGGGAGATAAGATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGGA
* * * * *
25476709 AGACAAGATCTGCTACTTTCAACCC
66 AGGCAAGATCTACTATTTTTAACCT
* * ** * * ** * * * * *
25476734 ACTCAACTGCTGCTCAGGGAGATAAGGCTTCCT--ATCTTCAATCTACTTCGCTGCTAATACAGA
1 GCTCCACTGCAACTTAGGGAGATAA-GATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGG
* * **
25476797 AAGACAAGATCTACTATTTTCAAAAT
65 AAGGCAAGATCTACTATTTTTAACCT
* ** * * * *
25476823 ACTCCACTGCTGCTCAGGGAAATAAG-TTTG-GGGTCTTCGATCTACTTCGCTGCCAATACAGGA
1 GCTCCACTGCAACTTAGGGAGATAAGATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGGA
* * *
25476886 AGACAAGATCTGCTATTTTCAACCT
66 AGGCAAGATCTACTATTTTTAACCT
* ** * * ** * * *
25476911 ACTCCACTGCTGCTCAAGGAGATAAG-GCTG-GCTATCTTCGATCTACTTCACTGCCAATACAGG
1 GCTCCACTGCAACTTAGGGAGATAAGATTTGTGGT-TCTTCGATCTGCTTCGCTGCCAATACAGG
* ** *
25476974 AAGACAAGATCTGTTATTTTCAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* * ** * * ** * *
25477000 ACTTCACTGCTGCTCAGGGACATAAGGCTTGCT--ATCTTCGATCTACTTCGCTGCCAATACAGG
1 GCTCCACTGCAACTTAGGGAGATAAGATTTG-TGGTTCTTCGATCTGCTTCGCTGCCAATACAGG
* * *
25477063 AAGACAAGATCTGCTATTTTCAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* * * * ** * * * * *
25477089 ACTCCACTACTACTCAGGGAGATAAG-GCTG-GCTATCTTCGATCTACTTCGTTACCAACACAGG
1 GCTCCACTGCAACTTAGGGAGATAAGATTTGTGGT-TCTTCGATCTGCTTCGCTGCCAATACAGG
* ** *
25477152 AAGACAAGATCTGTTATTTTCAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* * ** * * *
25477178 ACTCCACTGCTACTTAGGGAGATAAG-GCTG-GCTATCTTTGATCTACTTCGCTGCCAATACAGG
1 GCTCCACTGCAACTTAGGGAGATAAGATTTGTGGT-TCTTCGATCTGCTTCGCTGCCAATACAGG
* * *
25477241 AAGACAAGATCTGCTATTTTCAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* * *** * * *
25477267 ACTTCACTATTA-TTCAGGGAGATAAG-TTTG-GGGTCTTTGATCTACTTCGCTGCCAATACAGG
1 GCTCCACTGCAACTT-AGGGAGATAAGATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGG
** **
25477329 AAAACAAGATCTGTTATTTTTAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* * * ** * * ** * * *
25477355 ACTACACTACTGCTCAAGGAGATAAGGCTAGCT--ATCTTCGATCTACTTCGCTGCCAATACAGG
1 GCTCCACTGCAACTTAGGGAGATAAGATTTG-TGGTTCTTCGATCTGCTTCGCTGCCAATACAGG
* ** *
25477418 AAGACAAGATCTGTTATTTTCAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* ** * ** * * *
25477444 ACTCCACTGCTGCTCAGGTG-GATAAG-GCTG-GGGTC-TCGATTTACTTCGCTGCCAATACAGG
1 GCTCCACTGCAACTTAGG-GAGATAAGATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGG
* *
25477505 AAGACAAGATCTACTATTTTCAACCT
65 AAGGCAAGATCTACTATTTTTAACCT
* * ** *
25477531 ACTCTACTGCTGCTCAGGGAGATAAG
1 GCTCCACTGCAACTTAGGGAGATAAG
25477557 GCTTTAAGGT
Statistics
Matches: 859, Mismatches: 119, Indels: 50
0.84 0.12 0.05
Matches are distributed among these distances:
86 1 0.00
87 74 0.09
88 225 0.26
89 480 0.56
90 24 0.03
91 55 0.06
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (90 bp):
GCTCCACTGCAACTTAGGGAGATAAGATTTGTGGTTCTTCGATCTGCTTCGCTGCCAATACAGGA
AGGCAAGATCTACTATTTTTAACCT
Found at i:25476629 original size:46 final size:46
Alignment explanation
Indices: 25476497--25476631 Score: 107
Period size: 45 Copynumber: 2.9 Consensus size: 46
25476487 GATAGGATTA
* * *
25476497 GTTTCTTCAATCTGCTTCGCCGCCAATATAGGAAGGCAAGATCTACT
1 GTTT-TTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTACT
* * * * ** **
25476544 GTTTTTAG-TCTGCTCCACTG-CAA-ACTTAGGGAGATAAGAT-TTGT
1 GTTTTTCGATCTGCTTCGCTGCCAATAC--AGGAAGGCAAGATCTACT
25476588 GGTTTTTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCT
1 -GTTTTTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCT
25476632 GTTATTTTTA
Statistics
Matches: 64, Mismatches: 17, Indels: 14
0.67 0.18 0.15
Matches are distributed among these distances:
43 1 0.02
44 5 0.08
45 26 0.41
46 22 0.34
47 8 0.12
48 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (46 bp):
GTTTTTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTACT
Found at i:25476640 original size:46 final size:46
Alignment explanation
Indices: 25476506--25476641 Score: 116
Period size: 46 Copynumber: 3.0 Consensus size: 46
25476496 AGTTTCTTCA
* * **
25476506 ATCTGCTTCGCCGCCAATATAGGAAGGCAAGATCTACTGTTTTTAG
1 ATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGTTGTTTTTAG
* * * ** * * *
25476552 -TCTGCTCCACTG-CAA-ACTTAGGGAGATAAGATTTGTGGTTTTTCG
1 ATCTGCTTCGCTGCCAATAC--AGGAAGGCAAGATCTGTTGTTTTTAG
*
25476597 ATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGTTATTTTTA
1 ATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGTTGTTTTTA
25476642 ACCTACTCCA
Statistics
Matches: 64, Mismatches: 21, Indels: 10
0.67 0.22 0.11
Matches are distributed among these distances:
43 1 0.02
44 3 0.05
45 27 0.42
46 28 0.44
47 3 0.05
48 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (46 bp):
ATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGTTGTTTTTAG
Found at i:25476805 original size:89 final size:89
Alignment explanation
Indices: 25476593--25477560 Score: 1309
Period size: 89 Copynumber: 10.9 Consensus size: 89
25476583 TTTGTGGTTT
* * * * *
25476593 TTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGTTATTTTTAACCTACTCCACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
**
25476658 CTCAGGGAGATAAGGCTTG-GGTC
66 CTCAGGGAGATAAGGCTTGCTATC
* * * *
25476681 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTACTTTCAACCCACTCAACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
*
25476746 CTCAGGGAGATAAGGCTTCCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
* * * * **
25476770 TTCAATCTACTTCGCTGCTAATACAGAAAGACAAGATCTACTATTTTCAAAATACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
* * ***
25476835 CTCAGGGAAATAA-GTTTGGGGTC
66 CTCAGGGAGATAAGGCTTGCTATC
25476858 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
* *
25476923 CTCAAGGAGATAAGGCTGGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
* * *
25476947 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTTCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
*
25477012 CTCAGGGACATAAGGCTTGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
* *
25477036 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTA
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
*
25477101 CTCAGGGAGATAAGGCTGGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
* * * * *
25477125 TTCGATCTACTTCGTTACCAACACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTA
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
* *
25477190 CTTAGGGAGATAAGGCTGGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
* * ** *
25477214 TTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTTCACTATTA
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
* * ***
25477279 TTCAGGGAGATAA-GTTTGGGGTC
66 CTCAGGGAGATAAGGCTTGCTATC
* * * * * *
25477302 TTTGATCTACTTCGCTGCCAATACAGGAAAACAAGATCTGTTATTTTTAACCTACTACACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
* *
25477367 CTCAAGGAGATAAGGCTAGCTATC
66 CTCAGGGAGATAAGGCTTGCTATC
*
25477391 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
***
25477456 CTCAGGTG-GATAAGGC-TGGGGTC
66 CTCAGG-GAGATAAGGCTTGCTATC
* * *
25477479 -TCGATTTACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCTACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
25477543 CTCAGGGAGATAAGGCTT
66 CTCAGGGAGATAAGGCTT
25477561 TAAGGTTTCA
Statistics
Matches: 772, Mismatches: 102, Indels: 12
0.87 0.12 0.01
Matches are distributed among these distances:
86 1 0.00
87 74 0.10
88 228 0.30
89 468 0.61
90 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (89 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
CTCAGGGAGATAAGGCTTGCTATC
Found at i:25476808 original size:177 final size:177
Alignment explanation
Indices: 25476593--25477560 Score: 1300
Period size: 177 Copynumber: 5.5 Consensus size: 177
25476583 TTTGTGGTTT
* * * *
25476593 TTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGTTATTTTTAACCTACTCCACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
25476658 CTCAGGGAGATAAGGCTTGGGTCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCT
66 CTCAGGGAGATAAGGCTTGGATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
25476723 ACTTTCAACCCACTCAACTGCTGCTCAGGGAGATAAGGCTTCCTATC
131 ATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
* * * ** **
25476770 TTCAATCTACTTCGCTGCTAATACAGAAAGACAAGATCTACTATTTTCAAAATACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * *
25476835 CTCAGGGAAATAA-GTTTGGGGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGC
66 CTCAGGGAGATAAGGCTT-GGATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGC
* *
25476899 TATTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGCTATC
130 TATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
* *
25476947 TTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTTCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
25477012 CTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGC
66 CTCAGGGAGATAAGGCTTG-GATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGC
* * *
25477077 TATTTTCAACCTACTCCACTACTACTCAGGGAGATAAGGCTGGCTATC
130 TATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
* * * *
25477125 TTCGATCTACTTCGTTACCAACACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTA
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
25477190 CTTAGGGAGATAAGGC-TGGCTATCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTG
66 CTCAGGGAGATAAGGCTTGG--ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTG
* ** ** * ***
25477254 CTATTTTCAACCTACTTCACTATTATTCAGGGAGATAA-GTTTGGGGTC
129 CTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
* * * * *
25477302 TTTGATCTACTTCGCTGCCAATACAGGAAAACAAGATCTGTTATTTTTAACCTACTACACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * * *
25477367 CTCAAGGAGATAAGGCTAGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGT
66 CTCAGGGAGATAAGGCTTG-GATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGC
***
25477432 TATTTTCAACCTACTCCACTGCTGCTCAGGTG-GATAAGGC-TGGGGTC
130 TATTTTCAACCTACTCCACTGCTGCTCAGG-GAGATAAGGCTTGCTATC
* ** *
25477479 -TCGATTTACTTCGCTGCCAATACAGGAAGACAAGATCTACTATTTTCAACCTACTCTACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
25477543 CTCAGGGAGATAAGGCTT
66 CTCAGGGAGATAAGGCTT
25477561 TAAGGTTTCA
Statistics
Matches: 696, Mismatches: 86, Indels: 19
0.87 0.11 0.02
Matches are distributed among these distances:
176 74 0.11
177 378 0.54
178 244 0.35
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (177 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
CTCAGGGAGATAAGGCTTGGATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
ATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGCTATC
Found at i:25476945 original size:44 final size:43
Alignment explanation
Indices: 25476895--25477292 Score: 167
Period size: 44 Copynumber: 9.0 Consensus size: 43
25476885 AAGACAAGAT
* *
25476895 CTGCTATTTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGG
1 CTGCTATTTTCAACCTACTTCACTGCTACTCAAGGAGATAAGG
* * * * * * *
25476938 CTGGCTATCTTCGATCTACTTCACTGCCAAT-ACAGGAAGACAAGAT
1 CT-GCTATTTTCAACCTACTTCACTGCTACTCA-AGG-AGATAAG-G
* * * *
25476984 CTGTTATTTTCAACCTACTTCACTGCTGCTCAGGGACATAAGG
1 CTGCTATTTTCAACCTACTTCACTGCTACTCAAGGAGATAAGG
* * * * * * * *
25477027 CTTGCTATCTTCGATCTACTTCGCTGCCAAT-ACAGGAAGACAAGAT
1 C-TGCTATTTTCAACCTACTTCACTGCTACTCA-AGG-AGATAAG-G
* * *
25477073 CTGCTATTTTCAACCTACTCCACTACTACTCAGGGAGATAAGG
1 CTGCTATTTTCAACCTACTTCACTGCTACTCAAGGAGATAAGG
* * * ** * * * * *
25477116 CTGGCTATCTTCGATCTACTTCGTTACCA-ACACAGGAAGACAAGAT
1 CT-GCTATTTTCAACCTACTTCACTGCTACTCA-AGG-AGATAAG-G
* * * *
25477162 CTGTTATTTTCAACCTACTCCACTGCTACTTAGGGAGATAAGG
1 CTGCTATTTTCAACCTACTTCACTGCTACTCAAGGAGATAAGG
* * * * * * *
25477205 CTGGCTATCTTT-GATCTACTTCGCTGCCAAT-ACAGGAAGACAAGAT
1 CT-GCTAT-TTTCAACCTACTTCACTGCTACTCA-AGG-AGATAAG-G
** * *
25477251 CTGCTATTTTCAACCTACTTCACTATTATTCAGGGAGATAAG
1 CTGCTATTTTCAACCTACTTCACTGCTACTCAAGGAGATAAG
25477293 TTTGGGGTCT
Statistics
Matches: 246, Mismatches: 87, Indels: 43
0.65 0.23 0.11
Matches are distributed among these distances:
43 12 0.05
44 113 0.46
45 110 0.45
46 11 0.04
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
CTGCTATTTTCAACCTACTTCACTGCTACTCAAGGAGATAAGG
Found at i:25477027 original size:266 final size:265
Alignment explanation
Indices: 25476593--25477560 Score: 1304
Period size: 266 Copynumber: 3.6 Consensus size: 265
25476583 TTTGTGGTTT
* * * *
25476593 TTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGTTATTTTTAACCTACTCCACTACTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* *
25476658 CTCAGGGAGATAAGGCTTGG-GTCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
66 CTCAAGGAGATAAGGC-TGGTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
* * * *
25476722 TACTTTCAACCCACTCAACTGCTGCTCAGGGAGATAAGGCTTCCTATCTTCAATCTACTTCGCTG
130 TATTTTCAACCTACTCAACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCTACTTCGCTG
* * ** * * *
25476787 CTAATACAGAAAGACAAGATCTACTATTTTCAAAATACTCCACTGCTGCTCAGGGAAATAAGTTT
195 CCAATACAGAAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAGCTT
**
25476852 GGGGTC
260 GGTATC
*
25476858 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
*
25476923 CTCAAGGAGATAAGGCTGGCTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGT
66 CTCAAGGAGATAAGGCTGG-TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
*
25476988 TATTTTCAACCTACTTC-ACTGCTGCTCAGGGACATAAGGCTTGCTATCTTCGATCTACTTCGCT
130 TATTTTCAACCTAC-TCAACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCTACTTCGCT
* *
25477052 GCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTACTCAGGGAGATAAGGC
194 GCCAATACAGAAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAA-GC
25477117 -TGGCTATC
258 TTGG-TATC
* * * *
25477125 TTCGATCTACTTCGTTACCAACACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTA
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* * * *
25477190 CTTAGGGAGATAAGGCTGGCTATCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGC
66 CTCAAGGAGATAAGGCTGG-TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
** ** * *** *
25477255 TATTTTCAACCTACTTC-ACTATTATTCAGGGAGATAA-GTTTGGGGTCTTTGATCTACTTCGCT
130 TATTTTCAACCTAC-TCAACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCTACTTCGCT
* * * *
25477318 GCCAATACAGGAAA-ACAAGATCTGTTATTTTTAACCTACTACACTACTGCTCAAGGAGATAAGG
194 GCCAATACA-GAAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAA-G
* *
25477382 CTAGCTATC
257 CTTGGTATC
25477391 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
* ** * * *
25477456 CTC-AGGTGGATAAGGCTGGGGTC-TCGATTTACTTCGCTGCCAATACAGGAAGACAAGATCTAC
66 CTCAAGG-AGATAAGGCTGGTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGC
*
25477519 TATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTT
130 TATTTTCAACCTACTCAACTGCTGCTCAGGGAGATAAGGCTT
25477561 TAAGGTTTCA
Statistics
Matches: 624, Mismatches: 69, Indels: 20
0.88 0.10 0.03
Matches are distributed among these distances:
263 2 0.00
264 70 0.11
265 82 0.13
266 309 0.50
267 161 0.26
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (265 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGCTG
CTCAAGGAGATAAGGCTGGTATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCT
ATTTTCAACCTACTCAACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCTACTTCGCTGC
CAATACAGAAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCTCAGGGAGATAAGCTTG
GTATC
Found at i:25478489 original size:26 final size:26
Alignment explanation
Indices: 25478430--25478480 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25478420 AGTATCTTGA
* *
25478430 AAAGAACAAAGTATTCCAAGAACAGG
1 AAAGAATAAAGTACTCCAAGAACAGG
25478456 AAAGAATAAAGTACTCCAAGAACAG
1 AAAGAATAAAGTACTCCAAGAACAG
25478481 CAAGTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.55, C:0.16, G:0.18, T:0.12
Consensus pattern (26 bp):
AAAGAATAAAGTACTCCAAGAACAGG
Found at i:25492162 original size:51 final size:51
Alignment explanation
Indices: 25492106--25492396 Score: 149
Period size: 56 Copynumber: 5.1 Consensus size: 51
25492096 AAGAATATTT
25492106 ATTATTAATAATTTTATTAGATTATATATTTTAATTAAAATATATGTAATA
1 ATTATTAATAATTTTATTAGATTATATATTTTAATTAAAATATATGTAATA
* * *
25492157 ATTATTTCAAATTATATTTTA-TAGTATCATATATTATGATTTTAGTAAATTCATATAAG-AATA
1 ATTA-TT--AA-TA-ATTTTATTAG-AT--TATA-TAT--TTTAATTAAA---ATATATGTAATA
* *
25492220 TTTATTATTAATAATTTTATTAGATTATATAATTTAATTAAAATATATTTAATA
1 ---ATTATTAATAATTTTATTAGATTATATATTTTAATTAAAATATATGTAATA
* * *
25492274 ATTATTTCAAACTATATTTTA-TAGTATCATATATTATGATTTTAGTAAATTCATATAAG-AATA
1 ATTA-TT--AA-TA-ATTTTATTAG-AT--TATA-TAT--TTTAATTAAA---ATATATGTAATA
* * *
25492337 TTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATA
1 ---ATTATTAATAATTTTATTAGATTATATATTTTAATTAAAATATATGTAATA
25492391 ATTATT
1 ATTATT
25492397 TCAAATTATA
Statistics
Matches: 183, Mismatches: 19, Indels: 76
0.66 0.07 0.27
Matches are distributed among these distances:
51 14 0.08
52 4 0.02
53 10 0.05
54 12 0.07
55 10 0.05
56 32 0.17
58 13 0.07
59 13 0.07
61 32 0.17
62 8 0.04
63 12 0.07
64 11 0.06
65 4 0.02
66 8 0.04
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (51 bp):
ATTATTAATAATTTTATTAGATTATATATTTTAATTAAAATATATGTAATA
Found at i:25492195 original size:117 final size:117
Alignment explanation
Indices: 25492053--25492514 Score: 825
Period size: 117 Copynumber: 3.9 Consensus size: 117
25492043 TTAATTAAAA
* *
25492053 ATATTCTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAATAAT
1 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAT
* *
25492118 TTTATTAGATTATATATTTTAATTAAAATATATGTAATAATTATTTCAAATT
66 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATT
*
25492170 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAATAAT
1 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAT
* * *
25492235 TTTATTAGATTATATAATTTAATTAAAATATATTTAATAATTATTTCAAACT
66 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATT
25492287 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAT
1 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAT
25492352 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATT
66 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATT
25492404 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAT
1 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAT
*
25492469 TGTATTAAATTATATATTTTAATTAAAATATATTAATAATAATTAT
66 TTTATTAAATTATATATTTTAATTAAAATATATT--TAATAATTAT
25492515 GTTAAAATAT
Statistics
Matches: 334, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
117 324 0.97
119 10 0.03
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (117 bp):
ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAT
TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATT
Found at i:25492253 original size:18 final size:17
Alignment explanation
Indices: 25492226--25492259 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
25492216 AATATTTATT
*
25492226 ATTAATAATTTTATTAG
1 ATTAATAATTTAATTAG
25492243 ATTATATAATTTAATTA
1 ATTA-ATAATTTAATTA
25492260 AAATATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTAATAATTTAATTAG
Found at i:25492357 original size:15 final size:16
Alignment explanation
Indices: 25492329--25492358 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
25492319 TAAATTCATA
25492329 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
25492345 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
25492359 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:25492378 original size:18 final size:17
Alignment explanation
Indices: 25492350--25492384 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25492340 ATTATTAAGA
*
25492350 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25492367 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25492385 TTAATAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25492687 original size:25 final size:25
Alignment explanation
Indices: 25492659--25492708 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
25492649 ATTACACCTC
*
25492659 TATTCCATTCAACCAAACACAAGAA
1 TATTCCATTCAACCAAACAAAAGAA
25492684 TATTCCATTCAACCAAACAAAAGAA
1 TATTCCATTCAACCAAACAAAAGAA
25492709 ATACCTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.50, C:0.26, G:0.04, T:0.20
Consensus pattern (25 bp):
TATTCCATTCAACCAAACAAAAGAA
Done.