Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 84 of 216
Found at i:25805731 original size:7 final size:7
Alignment explanation
Indices: 25805719--25805750 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
25805709 TAAATTTGAA
25805719 TAAACCC
1 TAAACCC
25805726 TAAACCC
1 TAAACCC
25805733 TAAACCC
1 TAAACCC
25805740 TAAACCC
1 TAAACCC
25805747 TAAA
1 TAAA
25805751 AAATTAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:25816647 original size:31 final size:31
Alignment explanation
Indices: 25816582--25816639 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
25816572 ATTCAAAAAA
*
25816582 TTTTATTTAAGCCACTGAACTATTTAAAATT
1 TTTTATTTAAGCCACTGAACTAGTTAAAATT
* *
25816613 TTTTATTTAAGTCATTGAACT-GTTAAA
1 TTTTATTTAAGCCACTGAACTAGTTAAA
25816640 TTCTTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 5 0.21
31 19 0.79
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (31 bp):
TTTTATTTAAGCCACTGAACTAGTTAAAATT
Found at i:25824489 original size:48 final size:47
Alignment explanation
Indices: 25824356--25824490 Score: 162
Period size: 48 Copynumber: 2.8 Consensus size: 47
25824346 CTATTTACCT
* * **
25824356 TGTAGGTTTAACCCTAACGGGTAACTAGACACTATTACTCATTATTTG
1 TGTAGGTTTAACCCTAAC-GGTAACCAGACACTATTATTCATTATTCA
* * *
25824404 TGTAGGTTTAACCTTGACGAGTAATCAGACACTATTATTCATTATTCA
1 TGTAGGTTTAACCCTAACG-GTAACCAGACACTATTATTCATTATTCA
* *
25824452 TGTAGGTTTAACCCAAACAGGTAACCAGGCACTATTATT
1 TGTAGGTTTAACCCTAAC-GGTAACCAGACACTATTATT
25824491 TTCACCTGTG
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 71 0.97
49 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (47 bp):
TGTAGGTTTAACCCTAACGGTAACCAGACACTATTATTCATTATTCA
Found at i:25828155 original size:28 final size:28
Alignment explanation
Indices: 25828115--25828169 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
25828105 TAAGTCTATC
*
25828115 GGGACAGTAAACACGAGCTAGGTTTGTT
1 GGGACAGTAAACACGAGCTAAGTTTGTT
*
25828143 GGGACAGTAAACACGAGGTAAGTTTGT
1 GGGACAGTAAACACGAGCTAAGTTTGT
25828170 CGGGGTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.24
Consensus pattern (28 bp):
GGGACAGTAAACACGAGCTAAGTTTGTT
Found at i:25832069 original size:43 final size:43
Alignment explanation
Indices: 25832021--25832117 Score: 104
Period size: 43 Copynumber: 2.3 Consensus size: 43
25832011 TATGAATTCT
* * * *
25832021 TGTAAGACCATGTCTAGAACATTGGCATTGATATGAGATTACG
1 TGTAAGACCATGTCTAGAACAGTGGCATCGATATGAGATAACA
* * * * * *
25832064 TGTAAGACCCTGTTTGGGATAGTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTAGAACAGTGGCATCGATATGAGATAACA
25832107 TGTAAGACCAT
1 TGTAAGACCAT
25832118 ATTTGGGATA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGAACAGTGGCATCGATATGAGATAACA
Found at i:25832123 original size:43 final size:42
Alignment explanation
Indices: 25832043--25832144 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 42
25832033 TCTAGAACAT
* * * * *
25832043 TGGCATTGATATGAGATTACGTGTAAGACCCTGTTTGGGATA
1 TGGCATTGATATGTGATAACATGTAAGACCATATTTGGGATA
*
25832085 GTGGCATCGATATGTGATAACATGTAAGACCATATTTGGGATA
1 -TGGCATTGATATGTGATAACATGTAAGACCATATTTGGGATA
25832128 TGGCATTG-TATGTGATA
1 TGGCATTGATATGTGATA
25832145 TATGTGTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
41 9 0.17
42 7 0.13
43 36 0.69
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.33
Consensus pattern (42 bp):
TGGCATTGATATGTGATAACATGTAAGACCATATTTGGGATA
Found at i:25837044 original size:54 final size:52
Alignment explanation
Indices: 25836978--25837145 Score: 171
Period size: 54 Copynumber: 3.1 Consensus size: 52
25836968 TGGCCATGGG
*
25836978 AAGAAGACCATATAGTGTAAGACCTAATCTGGGACTATGGCATCATATA-GGA
1 AAGAAGA-CATATAGTGTAAGACCTAGTCTGGGACTATGGCATCATATAGGGA
* *
25837030 AAGTGAAGATCATATAGTGTAAGACCTAGTCATTATGG-CCATGGCATCATATAGGGA
1 AA--GAAGA-CATATAGTGTAAGACCTAGTC--T-GGGACTATGGCATCATATAGGGA
* * * *
25837087 AAGAAGACTACATAGTGTAAGACCTAGTTTGAGACTATGGCATCATGT-GGGA
1 AAGAAGAC-ATATAGTGTAAGACCTAGTCTGGGACTATGGCATCATATAGGGA
*
25837139 AAAAAGA
1 AAGAAGA
25837146 TAAAAGATGG
Statistics
Matches: 97, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
52 13 0.13
53 13 0.13
54 26 0.27
55 23 0.24
56 15 0.15
57 7 0.07
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (52 bp):
AAGAAGACATATAGTGTAAGACCTAGTCTGGGACTATGGCATCATATAGGGA
Found at i:25839192 original size:43 final size:43
Alignment explanation
Indices: 25839145--25839255 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
25839135 AAATAGAAGA
*
25839145 AAATATACTGGCACACACAGTGCATCATTGGACAAACCAAAGC
1 AAATATACTGGAACACACAGTGCATCATTGGACAAACCAAAGC
* * * * ** *
25839188 AAATATACTAGTACAGACATTATATCATTGGACGAACCAAAGC
1 AAATATACTGGAACACACAGTGCATCATTGGACAAACCAAAGC
25839231 AAATATACTGGAACACGA-AGTGCAT
1 AAATATACTGGAACAC-ACAGTGCAT
25839256 AAACCCGTAC
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
43 53 0.98
44 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (43 bp):
AAATATACTGGAACACACAGTGCATCATTGGACAAACCAAAGC
Found at i:25847690 original size:5 final size:5
Alignment explanation
Indices: 25847680--25847719 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
25847670 AGCTTGCACC
25847680 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
25847720 TTATTTAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:25856413 original size:25 final size:25
Alignment explanation
Indices: 25856364--25856418 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 25
25856354 GAGAAAAGAG
25856364 AAAGTTAGGGATTTAGTGGTGATAT
1 AAAGTTAGGGATTTAGTGGTGATAT
25856389 CAAAGTTAGGGATTT-GTGGTGATAT
1 -AAAGTTAGGGATTTAGTGGTGATAT
25856414 AAAGT
1 AAAGT
25856419 AATAAGGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 5 0.17
25 10 0.34
26 14 0.48
ACGTcount: A:0.33, C:0.02, G:0.31, T:0.35
Consensus pattern (25 bp):
AAAGTTAGGGATTTAGTGGTGATAT
Found at i:25868029 original size:36 final size:36
Alignment explanation
Indices: 25867983--25868055 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
25867973 TTATGTATGC
25867983 ATGCATTCAAACTTACTTAAAAAGATTTAAGAACTT
1 ATGCATTCAAACTTACTTAAAAAGATTTAAGAACTT
*
25868019 ATGCATTCAAACTTACTTAAAAATATTTAAGAACTT
1 ATGCATTCAAACTTACTTAAAAAGATTTAAGAACTT
25868055 A
1 A
25868056 GTCCAAGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (36 bp):
ATGCATTCAAACTTACTTAAAAAGATTTAAGAACTT
Found at i:25873651 original size:10 final size:10
Alignment explanation
Indices: 25873636--25873664 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
25873626 TTAAATTCTA
25873636 AAAGATAAAT
1 AAAGATAAAT
25873646 AAAGATAAAT
1 AAAGATAAAT
25873656 AAAGATAAA
1 AAAGATAAA
25873665 AACTAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:25886265 original size:27 final size:27
Alignment explanation
Indices: 25886224--25886286 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
25886214 ATAGGTTAAT
*
25886224 TTTAAAAT-AAGTAATATGTAAAATAA
1 TTTAAAATAAAATAATATGTAAAATAA
*
25886250 TTTAAAATAAAATAATATGTAAAGTAA
1 TTTAAAATAAAATAATATGTAAAATAA
*
25886277 CTTAAAATAA
1 TTTAAAATAA
25886287 TTAGACTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 8 0.24
27 25 0.76
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (27 bp):
TTTAAAATAAAATAATATGTAAAATAA
Found at i:25886334 original size:21 final size:21
Alignment explanation
Indices: 25886305--25886344 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
25886295 ATAAGTTAGG
25886305 TTAAGATAATAAATAAAAGGT
1 TTAAGATAATAAATAAAAGGT
* **
25886326 TTAATATAATCTATAAAAG
1 TTAAGATAATAAATAAAAG
25886345 AGAAAATTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.33
Consensus pattern (21 bp):
TTAAGATAATAAATAAAAGGT
Found at i:25892069 original size:50 final size:50
Alignment explanation
Indices: 25892015--25892322 Score: 265
Period size: 50 Copynumber: 6.2 Consensus size: 50
25892005 CACCATCCTA
* * * *
25892015 GCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAAATTCACCGTTGTG
1 GCTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTG
* * ** * * * * *
25892065 GCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTG
1 GCTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTG
* **
25892115 GCTTTAATCTATTCCACTACACCACCAGGGAAGTAAGATTCGCCGTTGTG
1 GCTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTG
* ** * ** * *
25892165 GCTTTAATCTTTTTAACTGCAATTTCGGGGAAGTAAGATTCGCCTTTGTG
1 GCTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTG
* ** * *
25892215 GCTTTAATCTATTCCACTACACTGCTTGGGAAGTAAGATTCACCGCTGTG
1 GCTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTG
* ** * * * * * * *
25892265 GCTTTAATCTTTTTAAGTGCAATGTCGGGGATGCAAGATTCGCCATTGTG
1 GCTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTG
25892315 GCTTTAAT
1 GCTTTAAT
25892323 TTGTTGCATT
Statistics
Matches: 200, Mismatches: 58, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 200 1.00
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (50 bp):
GCTTTAATCTATTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTG
Found at i:25892104 original size:100 final size:100
Alignment explanation
Indices: 25891891--25892310 Score: 431
Period size: 100 Copynumber: 4.3 Consensus size: 100
25891881 CTTCAATCTA
* * * * * * **
25891891 CAATGTCGGGGAAACAAGATTTGCCGTCGTAACTTCAATCTGTTCCA-TACACCGTCAAAGAAGT
1 CAATGTCGGGGAAGCAAGATTCGCCATCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGT
* *
25891955 AAGATTCGCCGTTG-GGCTTCAATC----T-ATTG
66 AAGATTCACCGTTGTGGCTTCAATCTTTTTAACTG
* * * * * * * *
25891984 CAATGTCAGGGAAACGAGATTCACCATCCTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCGCCATCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGT
*
25892049 AAAATTCACCGTTGTGGCTTCAATCTTTTTAACTG
66 AAGATTCACCGTTGTGGCTTCAATCTTTTTAACTG
** * * * *
25892084 CAATGTCGGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTATTCCACTACACCACCAGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCGCCATCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGT
* *
25892149 AAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTG
66 AAGATTCACCGTTGTGGCTTCAATCTTTTTAACTG
* * * * * * * **
25892184 CAATTTCGGGGAAGTAAGATTCGCCTTTGTGGCTTTAATCTATTCCACTACACTGCTTGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCGCCATCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGT
* * *
25892249 AAGATTCACCGCTGTGGCTTTAATCTTTTTAAGTG
66 AAGATTCACCGTTGTGGCTTCAATCTTTTTAACTG
*
25892284 CAATGTCGGGGATGCAAGATTCGCCAT
1 CAATGTCGGGGAAGCAAGATTCGCCAT
25892311 TGTGGCTTTA
Statistics
Matches: 273, Mismatches: 47, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
93 40 0.15
94 24 0.09
95 10 0.04
99 1 0.00
100 198 0.73
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (100 bp):
CAATGTCGGGGAAGCAAGATTCGCCATCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGT
AAGATTCACCGTTGTGGCTTCAATCTTTTTAACTG
Found at i:25892346 original size:100 final size:100
Alignment explanation
Indices: 25891982--25892322 Score: 457
Period size: 100 Copynumber: 3.4 Consensus size: 100
25891972 TTCAATCTAT
* * * * ** * * * *
25891982 TGCAATGTCAGGGAAACGAGATTCACCATCCTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTATTCCACTACACTGCCAGGGAA
* *
25892047 GTAAAATTCACCGTTGTGGCTTCAATCTTTTTAAC
66 GTAAGATTCACCGTTGTGGCTTTAATCTTTTTAAC
** **
25892082 TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTATTCCACTACACCACCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTATTCCACTACACTGCCAGGGAA
*
25892147 GTAAGATTCGCCGTTGTGGCTTTAATCTTTTTAAC
66 GTAAGATTCACCGTTGTGGCTTTAATCTTTTTAAC
* * * **
25892182 TGCAATTTCGGGGAAGTAAGATTCGCCTTTGTGGCTTTAATCTATTCCACTACACTGCTTGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTATTCCACTACACTGCCAGGGAA
* *
25892247 GTAAGATTCACCGCTGTGGCTTTAATCTTTTTAAG
66 GTAAGATTCACCGTTGTGGCTTTAATCTTTTTAAC
*
25892282 TGCAATGTCGGGGATGCAAGATTCGCCATTGTGGCTTTAAT
1 TGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAAT
25892323 TTGTTGCATT
Statistics
Matches: 209, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 209 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (100 bp):
TGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTATTCCACTACACTGCCAGGGAA
GTAAGATTCACCGTTGTGGCTTTAATCTTTTTAAC
Found at i:25899757 original size:27 final size:27
Alignment explanation
Indices: 25899716--25899778 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
25899706 ATAGGTTAAT
*
25899716 TTTAAAAT-AAGTAATATGTAAAATAA
1 TTTAAAATAAAATAATATGTAAAATAA
*
25899742 TTTAAAATAAAATAATATGTAAAGTAA
1 TTTAAAATAAAATAATATGTAAAATAA
*
25899769 CTTAAAATAA
1 TTTAAAATAA
25899779 TTAGACTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 8 0.24
27 25 0.76
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (27 bp):
TTTAAAATAAAATAATATGTAAAATAA
Found at i:25899826 original size:21 final size:21
Alignment explanation
Indices: 25899797--25899836 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
25899787 ATAAGTTAGG
25899797 TTAAGATAATAAATAAAAGGT
1 TTAAGATAATAAATAAAAGGT
* **
25899818 TTAATATAATCTATAAAAG
1 TTAAGATAATAAATAAAAG
25899837 AGAAAATTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.33
Consensus pattern (21 bp):
TTAAGATAATAAATAAAAGGT
Found at i:25899883 original size:18 final size:19
Alignment explanation
Indices: 25899851--25899886 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25899841 AATTGGAATT
*
25899851 AAAATAATTTGAAAATAAA
1 AAAAAAATTTGAAAATAAA
25899870 AAAAAAATTT-AAAATAA
1 AAAAAAATTTGAAAATAA
25899887 CATATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (19 bp):
AAAAAAATTTGAAAATAAA
Found at i:25908599 original size:27 final size:26
Alignment explanation
Indices: 25908582--25908651 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
25908572 ATATTAAGTC
25908582 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
25908609 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
25908637 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
25908652 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:25908645 original size:28 final size:28
Alignment explanation
Indices: 25908582--25908676 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
25908572 ATATTAAGTC
*
25908582 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
25908609 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
25908637 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
25908666 CGCACACTTAG
1 CGCACACTTAG
25908677 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25914342 original size:27 final size:27
Alignment explanation
Indices: 25914312--25914485 Score: 170
Period size: 27 Copynumber: 6.4 Consensus size: 27
25914302 TGAGTCCGCT
* *
25914312 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
* *
25914339 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
*
25914366 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAATC-AACTCGCA
** ** *
25914394 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
* * **
25914421 CTCTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAATCAACTCGCA
* * *
25914448 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
25914475 CACTTAGTGCT
1 CACTTAGTGCT
25914486 GTACAATTTA
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAATCAACTCGCA
Found at i:25919981 original size:27 final size:26
Alignment explanation
Indices: 25919964--25920033 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
25919954 ATATTAAGTC
25919964 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
25919991 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
25920019 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
25920034 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:25920027 original size:28 final size:28
Alignment explanation
Indices: 25919964--25920058 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
25919954 ATATTAAGTC
*
25919964 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
25919991 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
25920019 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
25920048 CGCACACTTAG
1 CGCACACTTAG
25920059 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25947962 original size:3 final size:3
Alignment explanation
Indices: 25947954--25947993 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
25947944 ATAAAGAAGG
25947954 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
25947994 GTATTAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:25948037 original size:5 final size:6
Alignment explanation
Indices: 25948018--25948075 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
25948008 TTTGGAATTC
* * *
25948018 AAATAA AAATAA AAATAA AACATTAC AAATAG AAATAA AAAGGAA AAATAA
1 AAATAA AAATAA AAATAA AA-A-TAA AAATAA AAATAA AAA-TAA AAATAA
*
25948069 AGATAA A
1 AAATAA A
25948076 CTAAATTGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
6 32 0.74
7 7 0.16
8 4 0.09
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:25951105 original size:47 final size:47
Alignment explanation
Indices: 25951034--25951132 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
25951024 CTTCTAGGAT
* * *
25951034 ACTCTCATGTGGTTATTCCAGCAACTTTTACCAATGGGAAGTTTTAG
1 ACTCTCATATGGTTATTCCAGCAACTTTTACAAATGGGAAGTTTCAG
*
25951081 ACTCTCATATGGTTATTCCCGCAACTTTTACAAATGGGAAGTTTCAG
1 ACTCTCATATGGTTATTCCAGCAACTTTTACAAATGGGAAGTTTCAG
25951128 ACTCT
1 ACTCT
25951133 GGGACCCTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (47 bp):
ACTCTCATATGGTTATTCCAGCAACTTTTACAAATGGGAAGTTTCAG
Found at i:25953214 original size:21 final size:20
Alignment explanation
Indices: 25953164--25953215 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
25953154 TACTTCGTAC
25953164 TCTTTTTTTTATTCTCAATT
1 TCTTTTTTTTATTCTCAATT
* *
25953184 TTTTTCTTTTTTTTCGT-AATT
1 TCTTT-TTTTTATTC-TCAATT
25953205 TCCTTTTTTTT
1 T-CTTTTTTTT
25953216 CCAATTACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 4 0.15
21 18 0.69
22 4 0.15
ACGTcount: A:0.10, C:0.13, G:0.02, T:0.75
Consensus pattern (20 bp):
TCTTTTTTTTATTCTCAATT
Found at i:25953288 original size:14 final size:14
Alignment explanation
Indices: 25953267--25953300 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
25953257 TTTTATGCAC
25953267 GAAA-TTTTTTTTA
1 GAAACTTTTTTTTA
25953280 GAAACTTTTTTTTA
1 GAAACTTTTTTTTA
*
25953294 CAAACTT
1 GAAACTT
25953301 ATCTTTCGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (14 bp):
GAAACTTTTTTTTA
Found at i:25955919 original size:88 final size:88
Alignment explanation
Indices: 25955623--25956041 Score: 461
Period size: 87 Copynumber: 4.8 Consensus size: 88
25955613 ATAAAGTTCA
* * *
25955623 GTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTACATTGACAGTGAAGCAAATCGA
1 GTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
* * *
25955688 A-AACAAAGCCTTGCCTCCATCA
66 AGACCAAAGCCTTGCCTCCCTCG
* * *
25955710 GTTGCAGTGGAGTGGGTTAAAGATAGCAGATCATGCCTTCCTGCATCGACAGCGAAGCAGATCGA
1 GTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
* *
25955775 A-AACAAAGACTTGCCTCCCTCG
66 AGACCAAAGCCTTGCCTCCCTCG
* * *
25955797 ATTGTAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATTGA
1 GTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
** *
25955862 AGACCCCAGCCTTGCCCCCCTCG
66 AGACCAAAGCCTTGCCTCCCTCG
** * * * * **
25955885 GTTGCAGTGGAGTAGGTTGCAA-ATAACAGATCTTGCCTTCCTGCGTAGACAGTAAAGCAGATCG
1 GTTGCAGTGGAGCGGGTT-AAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG
*
25955949 AAGA-CACCAG-CTTCGCCTCCCTCG
65 AAGACCA-AAGCCTT-GCCTCCCTCG
* * * * ** * * *
25955973 GTTACAGTGGAGCAGGTTGAAGATAGCAGATCTTACCTTCCTATACTGACGGCAAAGCAGATCGA
1 GTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
25956038 AGAC
66 AGAC
25956042 GGTGAATCTT
Statistics
Matches: 281, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
87 144 0.51
88 135 0.48
89 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (88 bp):
GTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
AGACCAAAGCCTTGCCTCCCTCG
Found at i:25956308 original size:129 final size:129
Alignment explanation
Indices: 25956029--25956298 Score: 468
Period size: 129 Copynumber: 2.1 Consensus size: 129
25956019 TGACGGCAAA
25956029 GCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAGCCACAAGTCATTT
1 GCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAGCCACAAGTCATTT
25956094 CTCCCTGAGGTTGCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCCCCTGAAGTTACAGTGGG
66 CTCCCTGAGGTTGCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCCCCTGAAGTTACAGTGGG
* * * *
25956158 ACAGATCGAAGACGGTGAATCTTATCTTCAAGTTTAAGGAAGCAGATTTAAGCCACAAGTCCTTT
1 GCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAGCCACAAGTCATTT
* * **
25956223 CTCCCTGAGGTTGCAGTGGAGCAGGCTAAGTAAGCAGGTCTTATCCCTCTGAAGTTGTAGTGGG
66 CTCCCTGAGGTTGCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCCCCTGAAGTTACAGTGGG
25956287 GCAGATCGAAGA
1 GCAGATCGAAGA
25956299 TGGCAAATCT
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 132 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (129 bp):
GCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAACAGATTTAAGCCACAAGTCATTT
CTCCCTGAGGTTGCAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCCCCTGAAGTTACAGTGGG
Found at i:25956897 original size:13 final size:13
Alignment explanation
Indices: 25956879--25956903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25956869 TTAAAAGTCC
25956879 AATTACAATGGGT
1 AATTACAATGGGT
25956892 AATTACAATGGG
1 AATTACAATGGG
25956904 CCAAATTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (13 bp):
AATTACAATGGGT
Found at i:25963014 original size:10 final size:10
Alignment explanation
Indices: 25962999--25963049 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
25962989 TTGGGTTAAG
25962999 ATTGAGCTGA
1 ATTGAGCTGA
25963009 ATTGAGCTCGA
1 ATTGAGCT-GA
25963020 A-TGAGCT-A
1 ATTGAGCTGA
*
25963028 ACTTGAGCTCA
1 A-TTGAGCTGA
*
25963039 AGTGAGCTGA
1 ATTGAGCTGA
25963049 A
1 A
25963050 CTAAGTTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
8 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:25963026 original size:20 final size:21
Alignment explanation
Indices: 25963001--25963051 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
25962991 GGGTTAAGAT
25963001 TGAGCTGAA-TTGAGCTCGAA-
1 TGAGCTGAACTTGAGCTC-AAG
25963021 TGAGCT-AACTTGAGCTCAAG
1 TGAGCTGAACTTGAGCTCAAG
25963041 TGAGCTGAACT
1 TGAGCTGAACT
25963052 AAGTTAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.14
20 20 0.71
21 4 0.14
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (21 bp):
TGAGCTGAACTTGAGCTCAAG
Found at i:25965474 original size:24 final size:25
Alignment explanation
Indices: 25965447--25965493 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
25965437 CTGTGGTTAA
* *
25965447 ATGACTGGTTTGTTTGTG-TTTGGT
1 ATGACTGATTTGTCTGTGATTTGGT
25965471 ATGACTGATTTGTCTGTGATTTG
1 ATGACTGATTTGTCTGTGATTTG
25965494 AGTGACTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.13, C:0.06, G:0.30, T:0.51
Consensus pattern (25 bp):
ATGACTGATTTGTCTGTGATTTGGT
Found at i:25965795 original size:96 final size:96
Alignment explanation
Indices: 25965675--25965865 Score: 267
Period size: 96 Copynumber: 2.0 Consensus size: 96
25965665 TACTACGATG
* * *
25965675 CTATTGATGGCTTTGTGCCAATCATATTACCATCACTAATGGCTATATACCGATCATATTACCAT
1 CTATTGATGGCTTTGTACCAATCATACTACCATCACTAATGGCTATATACCGATCATATTACCAC
*
25965740 TACTGATGG-TTGTGTGCCGATCATATTACTA
66 TACTGATGGCTT-TGTGCCAATCATATTACTA
* * * * * * *
25965771 CTATTGATGGCTTTGTACCGATCATACTACTATTACTGATGGCTATGTGCCGATCATATTACTAC
1 CTATTGATGGCTTTGTACCAATCATACTACCATCACTAATGGCTATATACCGATCATATTACCAC
25965836 TACTGATGGCTTTGTGCCAATCATATTACT
66 TACTGATGGCTTTGTGCCAATCATATTACT
25965866 GTACTTGTGG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
96 81 0.98
97 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (96 bp):
CTATTGATGGCTTTGTACCAATCATACTACCATCACTAATGGCTATATACCGATCATATTACCAC
TACTGATGGCTTTGTGCCAATCATATTACTA
Found at i:25965865 original size:32 final size:32
Alignment explanation
Indices: 25965679--25965865 Score: 216
Period size: 32 Copynumber: 5.8 Consensus size: 32
25965669 ACGATGCTAT
* *
25965679 TGATGGCTTTGTGCCAATCATATTACCA-TCAC
1 TGATGGCTTTGTGCCGATCATATTACTACT-AC
* * * * * *
25965711 TAATGGCTATATACCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
*
25965743 TGATGG-TTGTGTGCCGATCATATTACTACTAT
1 TGATGGCTT-TGTGCCGATCATATTACTACTAC
* * *
25965775 TGATGGCTTTGTACCGATCATACTACTATTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
*
25965807 TGATGGCTATGTGCCGATCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
*
25965839 TGATGGCTTTGTGCCAATCATATTACT
1 TGATGGCTTTGTGCCGATCATATTACT
25965866 GTACTTGTGG
Statistics
Matches: 130, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
31 1 0.01
32 126 0.97
33 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTACTAC
Found at i:25981134 original size:20 final size:20
Alignment explanation
Indices: 25981105--25981145 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
25981095 CATAGACATA
25981105 CATACAATCTCTAAATCAAG
1 CATACAATCTCTAAATCAAG
*
25981125 CATACCATCTCTAAATCAAG
1 CATACAATCTCTAAATCAAG
25981145 C
1 C
25981146 CCTCGAAGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.29, G:0.05, T:0.24
Consensus pattern (20 bp):
CATACAATCTCTAAATCAAG
Found at i:25981421 original size:25 final size:25
Alignment explanation
Indices: 25981386--25981468 Score: 130
Period size: 25 Copynumber: 3.3 Consensus size: 25
25981376 AGGGTCAGAC
*
25981386 GGCCGTGTCACACGCCCATGTGCCA
1 GGCCGTGTCACACGCCTATGTGCCA
* *
25981411 AGCCGTGTCACACGCCTGTGTGCCA
1 GGCCGTGTCACACGCCTATGTGCCA
*
25981436 GGCCATGTCACACGCCTATGTGCCA
1 GGCCGTGTCACACGCCTATGTGCCA
25981461 GGCCGTGT
1 GGCCGTGT
25981469 AACTCTCTGA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.16, C:0.36, G:0.29, T:0.19
Consensus pattern (25 bp):
GGCCGTGTCACACGCCTATGTGCCA
Found at i:25985987 original size:51 final size:51
Alignment explanation
Indices: 25985859--25986042 Score: 187
Period size: 51 Copynumber: 3.6 Consensus size: 51
25985849 TATCATTCAA
* ** *
25985859 TACACATAGTAGCCTTCACATAGTACTACACACGTG-ATCACGTTTTACGG
1 TACACATAGTAGCCTTCACATAGTACTACACATGTGAAAAAAGTTTTACGG
* *
25985909 TTCACATAGTAGCCTTCACATAGTACTACACATGTGAAAAAAGCTTTT-TGG
1 TACACATAGTAGCCTTCACATAGTACTACACATGTGAAAAAAG-TTTTACGG
* * ** * *
25985960 TACACATAGTAGCCTTCACTTGGTACTACACATGTG--ACCATTATTTATCGA
1 TACACATAGTAGCCTTCACATAGTACTACACATGTGAAAAAAGT-TTTA-CGG
* *
25986011 TACACGTACTAGCCTTCACATAGTACTACACA
1 TACACATAGTAGCCTTCACATAGTACTACACA
25986043 CGTGTTCATC
Statistics
Matches: 111, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 5 0.05
50 34 0.31
51 67 0.60
52 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (51 bp):
TACACATAGTAGCCTTCACATAGTACTACACATGTGAAAAAAGTTTTACGG
Found at i:25992091 original size:82 final size:82
Alignment explanation
Indices: 25991949--25992105 Score: 201
Period size: 82 Copynumber: 1.9 Consensus size: 82
25991939 AAATTGTACA
* * * *
25991949 GCACTAAGTGTGCGATTTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATACACTAAGTG
1 GCACTAAGTGTGCGATCTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATACACTAAGTG
25992014 TGCGAATTGACCATGCG
66 TGCGAATTGACCATGCG
** * *
25992031 GCACTAAGTGTGCGAGTCT-AACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAG
1 GCACTAAGTGTGCGA-TCTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-ACACTAAG
*
25992094 TGTGCGAGTTGA
64 TGTGCGAATTGA
25992106 TTGTATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 1 0.02
82 61 0.95
83 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (82 bp):
GCACTAAGTGTGCGATCTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATACACTAAGTG
TGCGAATTGACCATGCG
Found at i:25992101 original size:55 final size:54
Alignment explanation
Indices: 25991948--25992126 Score: 195
Period size: 55 Copynumber: 3.3 Consensus size: 54
25991938 TAAATTGTAC
* *
25991948 AGCACTAAGTGTGCGATTTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATGAT
* * * *
25992004 A-CACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATGAT
* *
25992058 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTG-AT-TGTAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAG-TGAATATG-AT
*
25992112 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25992127 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 40 0.38
55 57 0.55
56 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTGAATATGAT
Found at i:25992107 original size:27 final size:27
Alignment explanation
Indices: 25991949--25992105 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
25991939 AAATTGTACA
* *
25991949 GCACTAAGTGTGCGATTTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
25991977 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* * *
25992004 ACACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
25992031 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
25992059 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
25992086 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
25992106 TTGTATAGCA
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
27 67 0.63
28 39 0.37
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:25992116 original size:27 final size:27
Alignment explanation
Indices: 25991941--25992126 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
25991931 GCGGGATTAA
* *
25991941 ATTGTACAGCACTAAGTGTGCGATTTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
25991969 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
25991996 AATATG-ATA-CACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
25992023 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
25992051 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
25992078 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
25992105 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
25992127 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 26, Indels: 17
0.74 0.16 0.10
Matches are distributed among these distances:
26 1 0.01
27 79 0.64
28 40 0.32
29 1 0.01
30 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:25992117 original size:82 final size:82
Alignment explanation
Indices: 25991941--25992126 Score: 196
Period size: 82 Copynumber: 2.3 Consensus size: 82
25991931 GCGGGATTAA
* * * *
25991941 ATTGTACAGCACTAAGTGTGCGATTTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATAC
1 ATTGTACAGCACTAAGTGTGCGATCTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATAC
25992006 ACTAAGTGTGCGAATTG
66 ACTAAGTGTGCGAATTG
*** * * ** *
25992023 ACCATGCGGCACTAAGTGTGCGAGTCT-AACTATGTAGCACTAAGTGTGCGATTTGATTACG-TG
1 ATTGTACAGCACTAAGTGTGCGA-TCTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-
* *
25992086 GCACTAAGTGTGCGAGTTG
64 ACACTAAGTGTGCGAATTG
* *
25992105 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
25992127 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
81 1 0.01
82 78 0.96
83 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (82 bp):
ATTGTACAGCACTAAGTGTGCGATCTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATAC
ACTAAGTGTGCGAATTG
Found at i:25999969 original size:82 final size:81
Alignment explanation
Indices: 25999853--26000008 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
25999843 AAATTGTACA
* * * *
25999853 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
25999917 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25999934 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
25999999 TGCGAGTTGA
65 TGCGAATTGA
26000009 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25999976 original size:55 final size:52
Alignment explanation
Indices: 25999852--26000005 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
25999842 TAAATTGTAC
* *
25999852 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
25999905 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
25999960 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
26000006 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:26000010 original size:27 final size:27
Alignment explanation
Indices: 25999853--26000008 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
25999843 AAATTGTACA
*
25999853 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
25999880 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
25999907 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
25999934 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
25999962 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
25999989 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
26000009 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:26000019 original size:27 final size:27
Alignment explanation
Indices: 25999845--26000029 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
25999835 GCGGGATTAA
*
25999845 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
25999872 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
25999899 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
25999926 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
25999954 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
25999981 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
26000008 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
26000030 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:26000020 original size:82 final size:81
Alignment explanation
Indices: 25999845--26000029 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
25999835 GCGGGATTAA
* * * *
25999845 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
25999910 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
25999926 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
25999990 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
26000008 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
26000030 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:26004514 original size:51 final size:50
Alignment explanation
Indices: 26004382--26004574 Score: 221
Period size: 51 Copynumber: 3.8 Consensus size: 50
26004372 ACTATTATCA
* *
26004382 TTCGATACACGTAGTAGCCTTCACATAATACTACACACGTGATC-AAGTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAAGTT
* * * *
26004431 TTATGGTTCACATAGTAGCCTTCACATGGTACTACACACGTGA-CAAAAGCTT
1 TT-CGATACACATAGTAGCCTTCACATAGTACTACACACGTGATC-AAAG-TT
* * * *
26004483 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGATCATTA-TT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCA-AAGTT
*
26004533 TATCGATACACGTAGTAGCCTTCACATAGTACTACACACGTG
1 T-TCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
26004575 TCCATCGATA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
49 3 0.02
50 37 0.31
51 75 0.62
52 6 0.05
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (50 bp):
TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAAGTT
Found at i:26004520 original size:26 final size:26
Alignment explanation
Indices: 26004488--26004570 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
26004478 AGCTTTTCGG
26004488 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
* * *
26004514 TACACAT-GTGATCATT-ATTTA-T-C
1 TACACATAGT-AGCCTTCACTTAGTAC
* *
26004537 GATACACGTAGTAGCCTTCACATAGTAC
1 --TACACATAGTAGCCTTCACTTAGTAC
26004565 TACACA
1 TACACA
26004571 CGTGTCCATC
Statistics
Matches: 41, Mismatches: 9, Indels: 14
0.64 0.14 0.22
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 16 0.39
26 21 0.51
27 1 0.02
28 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTAGTAC
Found at i:26004525 original size:101 final size:102
Alignment explanation
Indices: 26004382--26004574 Score: 273
Period size: 101 Copynumber: 1.9 Consensus size: 102
26004372 ACTATTATCA
* * *
26004382 TTCGATACACGTAGTAGCCTTCACATAATACTACACACGTGATCAAGT-TTTAT-GGTTCACATA
1 TTCGATACACATAGTAGCCTTCACATAATACTACACACGTGATC-AGTATTTATCGATACACATA
*
26004445 GTAGCCTTCACATGGTACTACACACGTGACAAAAGCTT
65 GTAGCCTTCACATAGTACTACACACGTGACAAAAGCTT
* * * * * *
26004483 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGATCATTATTTATCGATACACGTAG
1 TTCGATACACATAGTAGCCTTCACATAATACTACACACGTGATCAGTATTTATCGATACACATAG
26004548 TAGCCTTCACATAGTACTACACACGTG
66 TAGCCTTCACATAGTACTACACACGTG
26004575 TCCATCGATA
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 2 0.03
101 44 0.55
102 34 0.43
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (102 bp):
TTCGATACACATAGTAGCCTTCACATAATACTACACACGTGATCAGTATTTATCGATACACATAG
TAGCCTTCACATAGTACTACACACGTGACAAAAGCTT
Found at i:26006063 original size:27 final size:27
Alignment explanation
Indices: 26006025--26006194 Score: 250
Period size: 27 Copynumber: 6.3 Consensus size: 27
26006015 TAGATTAGGT
26006025 ATTCCTTTCATATATTGCCACAAAGGC
1 ATTCCTTTCATATATTGCCACAAAGGC
* *
26006052 ATTCCTTTCATATATTACCACAAAGGA
1 ATTCCTTTCATATATTGCCACAAAGGC
** *
26006079 ATTCCTTTCATATATTGTGAAAAAGGC
1 ATTCCTTTCATATATTGCCACAAAGGC
26006106 ATTCCTTTCATATATTGCCACAAAGGC
1 ATTCCTTTCATATATTGCCACAAAGGC
* *
26006133 GTTCCTTTCATATATTGCCACAAAGCC
1 ATTCCTTTCATATATTGCCACAAAGGC
* * *
26006160 AATCCTTTCATATATTGCCAAAAAGCC
1 ATTCCTTTCATATATTGCCACAAAGGC
26006187 ATTCCTTT
1 ATTCCTTT
26006195 TCTAGCGTGT
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (27 bp):
ATTCCTTTCATATATTGCCACAAAGGC
Found at i:26016149 original size:30 final size:30
Alignment explanation
Indices: 26016118--26016313 Score: 150
Period size: 30 Copynumber: 6.6 Consensus size: 30
26016108 GGAGGTTATT
* *
26016118 AAATTATGAAAAGGGATGGTGACGACCATT
1 AAATAATGAAAAGGGATGGTGACGACCATC
*
26016148 AAATAATGAAAAGGGATGGTGATGACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
* * * *
26016178 GAACAATGAAAAGGGATGGCT-TC-AGCTATC
1 AAATAATGAAAAGGGATGG-TGACGA-CCATC
* ** * * * * *
26016208 CAATTGTAAAAATGGAGA-GCT-TCGGCTATC
1 AAATAATGAAAA-GG-GATGGTGACGACCATC
* *
26016238 AAATTATGAGAAGGGATGGTGACGACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
* *
26016268 -AACAATGAAAAGGGATGGTGACGACTATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
26016297 AAATAATGAAAAGGGAT
1 AAATAATGAAAAGGGAT
26016314 AGCTTCGGTT
Statistics
Matches: 130, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
28 2 0.02
29 30 0.23
30 92 0.71
31 4 0.03
32 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.21
Consensus pattern (30 bp):
AAATAATGAAAAGGGATGGTGACGACCATC
Found at i:26016280 original size:29 final size:30
Alignment explanation
Indices: 26016243--26016313 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 30
26016233 CTATCAAATT
*
26016243 ATGAGAAGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATGGTGACGACCATCAAACA
* *
26016272 ATGAAAAGGGATGGTGACGACTATCAAATA
1 ATGAAAAGGGATGGTGACGACCATCAAACA
26016302 ATGAAAAGGGAT
1 ATGAAAAGGGAT
26016314 AGCTTCGGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
29 23 0.61
30 15 0.39
ACGTcount: A:0.42, C:0.11, G:0.30, T:0.17
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCAAACA
Found at i:26016318 original size:89 final size:90
Alignment explanation
Indices: 26016148--26016356 Score: 221
Period size: 89 Copynumber: 2.3 Consensus size: 90
26016138 GACGACCATT
* * * *
26016148 AAATAATGAAAAGGGATGGTGATGACCATCGAACAATGAAAAGGGATGGCTTCAGCTATCCAATT
1 AAATAATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGGCTACAGCTATCAAATA
* *
26016213 GTAAAAATGGAGAGCTTCGGCTATC
66 ATAAAAAGGGAGAGCTTCGGCTATC
* *
26016238 AAATTATGAGAAGGGATGGTGACGACCATC-AACAATGAAAAGGGATGG-TGAC-GACTATCAAA
1 AAATAATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGGCT-ACAG-CTATCAAA
* * *
26016300 TAATGAAAAGGGATAGCTTCGGTTATC
64 TAATAAAAAGGGAGAGCTTCGGCTATC
** * *
26016327 GAGCT-ATGAAAAGGGTTGG-GACAACCATCG
1 -AAATAATGAAAAGGGATGGTGACGACCATCG
26016357 TGATTTTATT
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
88 11 0.11
89 59 0.60
90 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (90 bp):
AAATAATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGGCTACAGCTATCAAATA
ATAAAAAGGGAGAGCTTCGGCTATC
Found at i:26022985 original size:75 final size:75
Alignment explanation
Indices: 26022899--26023046 Score: 251
Period size: 75 Copynumber: 2.0 Consensus size: 75
26022889 AGAAAATCAT
* * *
26022899 GATTATTCCCTTATTAATAGAGAAGGCAAATGGAAAGTTAGAAAAATGAATTATATTCTTTTCAA
1 GATTATTCCCTTATTAATAGAGAAGACAAATGAAAAGTTAGAAAAATGAATTATATTCTTTCCAA
26022964 AAGAATATAA
66 AAGAATATAA
* *
26022974 GATTATTCCCTTATTAATAGAGAAGACAAATGAAAAGTTAGAAAAATTAATTTTATTCTTTCCAA
1 GATTATTCCCTTATTAATAGAGAAGACAAATGAAAAGTTAGAAAAATGAATTATATTCTTTCCAA
26023039 AAGAATAT
66 AAGAATAT
26023047 TAATTATCAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (75 bp):
GATTATTCCCTTATTAATAGAGAAGACAAATGAAAAGTTAGAAAAATGAATTATATTCTTTCCAA
AAGAATATAA
Found at i:26023241 original size:141 final size:138
Alignment explanation
Indices: 26023019--26023732 Score: 966
Period size: 141 Copynumber: 5.1 Consensus size: 138
26023009 AGTTAGAAAA
* * *
26023019 ATTAATTTTATTCTTTCCAAAAGAATATTAATTATCATGTCTTTTATATTTTGACCGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTGACCGAAATTAAT
* * * *
26023084 TAATATAATTGTTTATATTAATAAATTTC-ATAAAATATATACATTTAATTATATTCTATGAATC
66 TAATATAATTGTTTATATTAATAAA-TTCGGTAAAATATATACAATTAA-TATTTTGTATGAATC
26023148 AAATTCATATAT
129 AAATTC--ATAT
*
26023160 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTGACCAAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTGACCGAAATTAAT
26023225 TAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA
66 TAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA
26023290 ATTCATAT
131 ATTCATAT
* * * * * *
26023298 ATTAATTATATTATTTTCAAAAGAATATTAATTTCCATATATTTTATATTTTGATCGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTGACCGAAATTAAT
** *
26023363 TAATATAATTGTTTATATTAATAAATTTAGTAAAAATATATAAACAAATAATATTTTGTATGAAT
66 TAATATAATTGTTTATATTAATAAATTCGGT-AAAATATAT--ACAATTAATATTTTGTATGAAT
26023428 CAAATTCATAT
128 CAAATTCATAT
* * * *
26023439 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTATTTTACATTTTGACCGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTGACCGAAATTAAT
* * *
26023504 TAATACAATTGTTTATGTTAATAAATTCGGTAAAAAATATACAATTAATATTTTGTATGAATCAA
66 TAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA
26023569 ATTC--AT
131 ATTCATAT
26023575 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCAATATTAATTTTCATGTCTTTTATATTTT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTC-------A---TC---TCTTTTATATTTT
* * * *
26023640 GACCAAAATTTATTAATATAATTGTTTTTATTAATAAATTCGGTAAAATATATACAATTAATTTT
53 GACCGAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATT
*
26023705 TTATATGAATCAAATTCATAT
118 TTGTATGAATCAAATTCATAT
26023726 ATTAATT
1 ATTAATT
26023733 TTATCTATGT
Statistics
Matches: 513, Mismatches: 41, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
136 37 0.07
138 119 0.23
139 9 0.02
140 30 0.06
141 222 0.43
143 1 0.00
146 1 0.00
149 85 0.17
151 9 0.02
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (138 bp):
ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTGACCGAAATTAAT
TAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA
ATTCATAT
Found at i:26023379 original size:279 final size:277
Alignment explanation
Indices: 26023019--26023727 Score: 964
Period size: 279 Copynumber: 2.5 Consensus size: 277
26023009 AGTTAGAAAA
* * *
26023019 ATTAATTTTATTCTTTCCAAAAGAATATTAATTAT-CATGTCTTTTATATTTTGACCGAAATTAA
1 ATTAATTATATTCTTTCCAAAAGAATATTAATT-TCCATATATTTTATATTTTGACCGAAATTAA
* * *
26023083 TTAATATAATTGTTTATATTAATAAATTTCATAAAATATATACATTTAATTATATTCTATGAATC
65 TTAATATAATTGTTTATATTAATAAATTTCATAAAATATATACAATTAATTATTTTATATGAATC
* * *
26023148 AAATTCATATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTG
130 AAATTCATATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATCTATTTTACATTTTG
* *
26023213 ACCAAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTT
195 ACCAAAATTAATTAATACAATTGTTTATATTAATAAATTCGGTAAAAAATATACAATTAATATTT
26023278 TGTATGAATCAAATTCATAT
260 TGTATGAATCAAATTC--AT
* * *
26023298 ATTAATTATATTATTTTCAAAAGAATATTAATTTCCATATATTTTATATTTTGATCGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATATATTTTATATTTTGACCGAAATTAAT
* *
26023363 TAATATAATTGTTTATATTAATAAATTT-AGTAAAAATATATAAACAAATAA-TATTTTGTATGA
66 TAATATAATTGTTTATATTAATAAATTTCA-T-AAAATATAT--ACAATTAATTATTTTATATGA
*
26023426 ATCAAATTC--ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTATTTTACATT
127 ATCAAATTCATATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATCTATTTTACATT
* *
26023489 TTGACCGAAATTAATTAATACAATTGTTTATGTTAATAAATTCGGTAAAAAATATACAATTAATA
192 TTGACCAAAATTAATTAATACAATTGTTTATATTAATAAATTCGGTAAAAAATATACAATTAATA
26023554 TTTTGTATGAATCAAATTCAT
257 TTTTGTATGAATCAAATTCAT
*
26023575 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCAATATTAATTTTCATGTCTTTTATATTTT
1 ATTAATTATATTCTTTCCAAAAGAATATTAA-TTTC--CA-T-A---T-A----TTTTATATTTT
* * * *
26023640 GACCAAAATTTATTAATATAATTGTTTTTATTAATAAA-TTCGGTAAAATATATACAATTAATT-
53 GACCGAAATTAATTAATATAATTGTTTATATTAATAAATTTC-ATAAAATATATACAATTAATTA
26023703 TTTTATATGAATCAAATTCATATAT
117 TTTTATATGAATCAAATTCATATAT
26023728 TAATTTTATC
Statistics
Matches: 379, Mismatches: 28, Indels: 36
0.86 0.06 0.08
Matches are distributed among these distances:
277 31 0.08
278 6 0.02
279 216 0.57
280 10 0.03
281 20 0.05
282 7 0.02
285 1 0.00
286 1 0.00
287 25 0.07
288 1 0.00
289 15 0.04
290 46 0.12
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (277 bp):
ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATATATTTTATATTTTGACCGAAATTAAT
TAATATAATTGTTTATATTAATAAATTTCATAAAATATATACAATTAATTATTTTATATGAATCA
AATTCATATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATCTATTTTACATTTTGA
CCAAAATTAATTAATACAATTGTTTATATTAATAAATTCGGTAAAAAATATACAATTAATATTTT
GTATGAATCAAATTCAT
Found at i:26023616 original size:13 final size:13
Alignment explanation
Indices: 26023598--26023624 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26023588 TTTCCAAAAG
26023598 AATATTAATTTTC
1 AATATTAATTTTC
26023611 AATATTAATTTTC
1 AATATTAATTTTC
26023624 A
1 A
26023625 TGTCTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (13 bp):
AATATTAATTTTC
Found at i:26030532 original size:43 final size:43
Alignment explanation
Indices: 26030484--26030571 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
26030474 AGTAATTATT
26030484 TTATGTAATTAATTTAATATTAATTTCTCAAATCTACAATCCC
1 TTATGTAATTAATTTAATATTAATTTCTCAAATCTACAATCCC
* *
26030527 TTATGTGATTAATTTAATATTAATTTTTCAAATCTACAATCCC
1 TTATGTAATTAATTTAATATTAATTTCTCAAATCTACAATCCC
26030570 TT
1 TT
26030572 GGGTACGATC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (43 bp):
TTATGTAATTAATTTAATATTAATTTCTCAAATCTACAATCCC
Found at i:26031829 original size:9 final size:9
Alignment explanation
Indices: 26031815--26031890 Score: 77
Period size: 9 Copynumber: 8.4 Consensus size: 9
26031805 TTTGGTTAAA
26031815 AATTAACCG
1 AATTAACCG
**
26031824 AATTAACTA
1 AATTAACCG
26031833 AATT-ACCTG
1 AATTAACC-G
26031842 AATTAACCG
1 AATTAACCG
26031851 AATT-ACCTG
1 AATTAACC-G
26031860 AATT-ACCTG
1 AATTAACC-G
26031869 AATTAACCG
1 AATTAACCG
*
26031878 AATTAACCT
1 AATTAACCG
26031887 AATT
1 AATT
26031891 GAATCATACA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
8 5 0.09
9 47 0.81
10 6 0.10
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTAACCG
Found at i:26031890 original size:27 final size:28
Alignment explanation
Indices: 26031815--26031888 Score: 125
Period size: 27 Copynumber: 2.7 Consensus size: 28
26031805 TTTGGTTAAA
26031815 AATTAACCGAATTAA-CTAAATTACCTG
1 AATTAACCGAATTAACCTAAATTACCTG
*
26031842 AATTAACCGAATT-ACCTGAATTACCTG
1 AATTAACCGAATTAACCTAAATTACCTG
26031869 AATTAACCGAATTAACCTAA
1 AATTAACCGAATTAACCTAA
26031889 TTGAATCATA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 1 0.02
27 37 0.86
28 5 0.12
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.28
Consensus pattern (28 bp):
AATTAACCGAATTAACCTAAATTACCTG
Found at i:26034690 original size:20 final size:20
Alignment explanation
Indices: 26034665--26034809 Score: 78
Period size: 20 Copynumber: 7.2 Consensus size: 20
26034655 GAAGTGTAAA
*
26034665 CAGGGGCATGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* ** * ** *
26034685 CAGGGGTACCAAAGCACAAA
1 CAGGGGCACGTATGTGCAAT
**
26034705 CAGGGGCGTGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * * *
26034725 CAGGGGTAACG-AAGTACAAA
1 CAGGGG-CACGTATGTGCAAT
*
26034745 CAAGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * * *
26034765 CAGGGGTATCG-AAGTACAAA
1 CAGGGGCA-CGTATGTGCAAT
*
26034785 CAGTGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
26034805 CAGGG
1 CAGGG
26034810 ATACCAAAAT
Statistics
Matches: 82, Mismatches: 39, Indels: 8
0.64 0.30 0.06
Matches are distributed among these distances:
19 5 0.06
20 74 0.90
21 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.17
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCAAT
Found at i:26034717 original size:40 final size:40
Alignment explanation
Indices: 26034662--26034849 Score: 250
Period size: 40 Copynumber: 4.7 Consensus size: 40
26034652 ACTGAAGTGT
* *
26034662 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGCAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTAC
** * *
26034702 AAACAGGGGCGTGTATGTGCAATCAGGGGTAACGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTAC
* * *
26034742 AAACAAGGGCACGTATGTGCAATCAGGGGTATCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTAC
* * *
26034782 AAACAGTGGCACGTATGTGCAATCAGGGATACCAAAATAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTAC
*
26034822 AAATAGGGGCACGTATGTGCAATTCAGG
1 AAACAGGGGCACGTATGTGCAA-TCAGG
26034850 TATAATTAAC
Statistics
Matches: 131, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
40 126 0.96
41 5 0.04
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.18
Consensus pattern (40 bp):
AAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTAC
Found at i:26042148 original size:40 final size:40
Alignment explanation
Indices: 26042104--26042241 Score: 152
Period size: 40 Copynumber: 3.4 Consensus size: 40
26042094 AAACAGCGGT
* *
26042104 ACATATTTGCAATCAGGGGTACTAAAGTAAAAATAGGGGC
1 ACATATGTGCAATCAGGGGTACTAAAGTACAAATAGGGGC
* *
26042144 ACATATGTGCAATCAGGGGTACCAAAGTACAAACAGGGGC
1 ACATATGTGCAATCAGGGGTACTAAAGTACAAATAGGGGC
** * * *
26042184 ATGTATGTGTAATTAGGGGTA-TCGAAGTACAAATAGGGGC
1 ACATATGTGCAATCAGGGGTACT-AAAGTACAAATAGGGGC
* *
26042224 ACGTATGTGAAATTCAGG
1 ACATATGTGCAA-TCAGG
26042242 TATAATTAAC
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 78 0.95
41 4 0.05
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.22
Consensus pattern (40 bp):
ACATATGTGCAATCAGGGGTACTAAAGTACAAATAGGGGC
Found at i:26042180 original size:20 final size:20
Alignment explanation
Indices: 26042117--26042182 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
26042107 TATTTGCAAT
* *
26042117 CAGGGGTACTAAAGTAAAAA
1 CAGGGGTACCAAAGTACAAA
* * * * *
26042137 TAGGGGCA-CATATGTGCAAT
1 CAGGGGTACCA-AAGTACAAA
26042157 CAGGGGTACCAAAGTACAAA
1 CAGGGGTACCAAAGTACAAA
26042177 CAGGGG
1 CAGGGG
26042183 CATGTATGTG
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 1 0.03
20 29 0.91
21 2 0.06
ACGTcount: A:0.39, C:0.15, G:0.30, T:0.15
Consensus pattern (20 bp):
CAGGGGTACCAAAGTACAAA
Found at i:26044121 original size:18 final size:18
Alignment explanation
Indices: 26044074--26044137 Score: 92
Period size: 18 Copynumber: 3.3 Consensus size: 18
26044064 TAGGCAACTT
26044074 TTTTTTTGCGCTTTTTGCTTC
1 TTTTTTTGCGCTTTTTG---C
26044095 TTCTTTTTGCGCTTTTTGC
1 TT-TTTTTGCGCTTTTTGC
26044114 TTTTTTTGCGCTTTTTGC
1 TTTTTTTGCGCTTTTTGC
26044132 TTTTTT
1 TTTTTT
26044138 ATTCTGTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
18 22 0.52
19 3 0.07
21 2 0.05
22 15 0.36
ACGTcount: A:0.00, C:0.17, G:0.14, T:0.69
Consensus pattern (18 bp):
TTTTTTTGCGCTTTTTGC
Found at i:26044749 original size:31 final size:32
Alignment explanation
Indices: 26044690--26044754 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
26044680 GGAAAATAAC
26044690 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
26044722 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
26044753 AA
1 AA
26044755 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:26050832 original size:33 final size:33
Alignment explanation
Indices: 26050795--26050866 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
26050785 CCCTTTCTAG
* *
26050795 ATCACTTTCACCAT-AAGATTCTACCCCATCATC
1 ATCACCTTCACCATCAA-ATTCTACCCCATCAAC
* * *
26050828 ATCACCTTCCCCATCAACTTCTACCCCTTCAAC
1 ATCACCTTCACCATCAAATTCTACCCCATCAAC
26050861 ATCACC
1 ATCACC
26050867 CTCCCCAGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.28, C:0.43, G:0.01, T:0.28
Consensus pattern (33 bp):
ATCACCTTCACCATCAAATTCTACCCCATCAAC
Found at i:26051575 original size:117 final size:116
Alignment explanation
Indices: 26051369--26051693 Score: 524
Period size: 117 Copynumber: 2.8 Consensus size: 116
26051359 GGTAACAGAA
* * *
26051369 ATCAACAGCATCGGGACCACTGTCACATCACAAATTGACAAAACAAAACCTACATTGTGGCACTA
1 ATCAACAACATCGGGACCACTGTCGCATCACAAATTGACAAAAC-AAACCTACATTGTGGCACTG
* *
26051434 AAATTGCAATAATAAATCACAAATAACCATATACAATTTTAACAACAGCTTT
65 AAATTGCAATAATAAATCACAAATAACCATATACAAGTTTAACAACAACTTT
* *
26051486 ATCAACAACATCGAGACCATTGTCGCATCACAAATTGACAAAACAAACCTTACATTGTGGCACTG
1 ATCAACAACATCGGGACCACTGTCGCATCACAAATTGACAAAACAAACC-TACATTGTGGCACTG
*
26051551 AAATTGCAATAATAAATCACAAATAACCATCTACAAGTTTAACAACAACTTT
65 AAATTGCAATAATAAATCACAAATAACCATATACAAGTTTAACAACAACTTT
* *
26051603 ATCAACAACATTGGGACCACTGTCGCATCACAAATCGACAAAACAAACCCTACATTGTGGCACTG
1 ATCAACAACATCGGGACCACTGTCGCATCACAAATTGACAAAACAAA-CCTACATTGTGGCACTG
*
26051668 AAATTACAATAATAAATCACAAATAA
65 AAATTGCAATAATAAATCACAAATAA
26051694 TCAACAAACT
Statistics
Matches: 193, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
116 5 0.03
117 186 0.96
118 2 0.01
ACGTcount: A:0.44, C:0.23, G:0.10, T:0.22
Consensus pattern (116 bp):
ATCAACAACATCGGGACCACTGTCGCATCACAAATTGACAAAACAAACCTACATTGTGGCACTGA
AATTGCAATAATAAATCACAAATAACCATATACAAGTTTAACAACAACTTT
Found at i:26054355 original size:36 final size:37
Alignment explanation
Indices: 26054308--26054378 Score: 126
Period size: 36 Copynumber: 1.9 Consensus size: 37
26054298 AGATGGATAA
*
26054308 TATTGTAATATCAGTACAT-CCAATTTAATGAAATAC
1 TATTGTAATATCAGTACATCCCAATTAAATGAAATAC
26054344 TATTGTAATATCAGTACATCCCAATTAAATGAAAT
1 TATTGTAATATCAGTACATCCCAATTAAATGAAAT
26054379 TATTCAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 19 0.58
37 14 0.42
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.35
Consensus pattern (37 bp):
TATTGTAATATCAGTACATCCCAATTAAATGAAATAC
Found at i:26056321 original size:32 final size:32
Alignment explanation
Indices: 26056280--26056346 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
26056270 TCTAAACAAG
26056280 ATTTGGGAAAACTATTTCCTATGATGTATAAT
1 ATTTGGGAAAACTATTTCCTATGATGTATAAT
26056312 ATTTGGGAAAACTATTTCCTATGATGTATAAT
1 ATTTGGGAAAACTATTTCCTATGATGTATAAT
26056344 ATT
1 ATT
26056347 CTCTTTATTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (32 bp):
ATTTGGGAAAACTATTTCCTATGATGTATAAT
Found at i:26062638 original size:19 final size:18
Alignment explanation
Indices: 26062598--26062640 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
26062588 TAGGGGTTTA
* *
26062598 TTTAACTAAATAAATTAC
1 TTTAAATAAATAAAGTAC
*
26062616 TTTAAATAAAGTAAAGTAG
1 TTTAAATAAA-TAAAGTAC
26062635 TTTAAA
1 TTTAAA
26062641 GGGTTTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (18 bp):
TTTAAATAAATAAAGTAC
Found at i:26068090 original size:56 final size:55
Alignment explanation
Indices: 26068041--26068312 Score: 280
Period size: 55 Copynumber: 4.9 Consensus size: 55
26068031 TTCCCTATCT
* * * *
26068041 ATAGATTGCAACAAAGGCTTCCCTTCTTATAGATTTCCAGAAAGGCTTCCCTTTT-
1 ATAGATCGCCACAAAGGCTTCCCTTTTTATA-ATTTCCACAAAGGCTTCCCTTTTC
** * * **
26068096 ATA-ATTTTCCAGAAAGACTTTTCTTTTTATAATTTTCCACAAAGGCTTCCCTTTTC
1 ATAGA-TCGCCACAAAGGCTTCCCTTTTTATAA-TTTCCACAAAGGCTTCCCTTTTC
* * ** *
26068152 ATAG-TCGCCACAAAGGCTTCCATTTTCATATATCGCCACAAAGACTTCCCTTTTC
1 ATAGATCGCCACAAAGGCTTCCCTTTTTATA-ATTTCCACAAAGGCTTCCCTTTTC
* *
26068207 ATAGATCGCCACAAAGACTTCCCTTTTTATAATTCACCACAAAGGCTTCCCTTTTC
1 ATAGATCGCCACAAAGGCTTCCCTTTTTATAATT-TCCACAAAGGCTTCCCTTTTC
* * *
26068263 ATAGGTCGCCACAAAGGCTTCTCTTTTTATAGTTTGCCACAAAAGGCTTC
1 ATAGATCGCCACAAAGGCTTCCCTTTTTATAATTT-CCAC-AAAGGCTTC
26068313 ATCTTTTCTA
Statistics
Matches: 178, Mismatches: 30, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
54 2 0.01
55 87 0.49
56 80 0.45
57 9 0.05
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (55 bp):
ATAGATCGCCACAAAGGCTTCCCTTTTTATAATTTCCACAAAGGCTTCCCTTTTC
Found at i:26068105 original size:27 final size:27
Alignment explanation
Indices: 26068029--26068312 Score: 209
Period size: 28 Copynumber: 10.2 Consensus size: 27
26068019 ATTCATAAAT
* *
26068029 GCTTCCCTATCTATAGATT-GCAACAAAG
1 GCTTCCCT-TTTATA-ATTCGCCACAAAG
* *
26068057 GCTTCCCTTCTTATAGATT-TCCAGAAAG
1 GCTTCCCTT-TTATA-ATTCGCCACAAAG
** *
26068085 GCTTCCCTTTTATAATTTTCCAGAAAG
1 GCTTCCCTTTTATAATTCGCCACAAAG
* * * **
26068112 ACTTTTCTTTTTATAATTTTCCACAAAG
1 GC-TTCCCTTTTATAATTCGCCACAAAG
*
26068140 GCTTCCCTTTTCAT-AGTCGCCACAAAG
1 GCTTCCCTTTT-ATAATTCGCCACAAAG
*
26068167 GCTTCCATTTTCAT-ATATCGCCACAAAG
1 GCTTCCCTTTT-ATAAT-TCGCCACAAAG
*
26068195 ACTTCCCTTTTCATAGA-TCGCCACAAAG
1 GCTTCCCTTTT-ATA-ATTCGCCACAAAG
* *
26068223 ACTTCCCTTTTTATAATTCACCACAAAG
1 GCTTCCC-TTTTATAATTCGCCACAAAG
**
26068251 GCTTCCCTTTTCATAGGTCGCCACAAAG
1 GCTTCCCTTTT-ATAATTCGCCACAAAG
* * *
26068279 GCTTCTCTTTTTATAGTTTGCCACAAAAG
1 GCTTC-CCTTTTATAATTCGCCAC-AAAG
26068308 GCTTC
1 GCTTC
26068313 ATCTTTTCTA
Statistics
Matches: 218, Mismatches: 26, Indels: 23
0.82 0.10 0.09
Matches are distributed among these distances:
26 3 0.01
27 52 0.24
28 144 0.66
29 18 0.08
30 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (27 bp):
GCTTCCCTTTTATAATTCGCCACAAAG
Found at i:26068276 original size:84 final size:83
Alignment explanation
Indices: 26068132--26068305 Score: 231
Period size: 84 Copynumber: 2.1 Consensus size: 83
26068122 TTATAATTTT
* * *
26068132 CCACAAAGGCTTCCCTTTTCATAGTCGCCACAAAGGCTTCCATTTTCATATATCGCCACAAAGAC
1 CCACAAAGACTTCCCTTTTCATAGTCACCACAAAGGCTTCCATTTTCATAGATCGCCACAAAGAC
26068197 TTCCCTTTTCATAGATCG
66 TTCCCTTTTCATAGATCG
* * * * *
26068215 CCACAAAGACTTCCCTTTTTATAATTCACCACAAAGGCTTCCCTTTTCATAGGTCGCCACAAAGG
1 CCACAAAGACTTCCCTTTTCAT-AGTCACCACAAAGGCTTCCATTTTCATAGATCGCCACAAAGA
* * * *
26068280 CTTCTCTTTTTATAGTTTG
65 CTTCCCTTTTCATAGATCG
26068299 CCACAAA
1 CCACAAA
26068306 AGGCTTCATC
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
83 20 0.26
84 58 0.74
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (83 bp):
CCACAAAGACTTCCCTTTTCATAGTCACCACAAAGGCTTCCATTTTCATAGATCGCCACAAAGAC
TTCCCTTTTCATAGATCG
Found at i:26074614 original size:12 final size:12
Alignment explanation
Indices: 26074597--26074627 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26074587 GCCACACACA
*
26074597 GCCGTGTGTTAG
1 GCCGTGTGCTAG
26074609 GCCGTGTGCTAG
1 GCCGTGTGCTAG
26074621 GCCGTGT
1 GCCGTGT
26074628 AATTCACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.42, T:0.29
Consensus pattern (12 bp):
GCCGTGTGCTAG
Found at i:26081691 original size:26 final size:25
Alignment explanation
Indices: 26081648--26081739 Score: 78
Period size: 26 Copynumber: 3.6 Consensus size: 25
26081638 CTGTTAAATG
* * *
26081648 AACACTGACTTAAGGCCTGATAATTA
1 AACACCGACTCAAAGCCTGATAA-TA
* *
26081674 AACACCGACTCACAGCCTGCTAGATA
1 AACACCGACTCAAAGCCTGATA-ATA
* *
26081700 AATCACTGGCTCAAAGCCT-ACTAATA
1 AA-CACCGACTCAAAGCCTGA-TAATA
26081726 AACACCGACTCAAA
1 AACACCGACTCAAA
26081740 TCCTACAAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
25 10 0.19
26 26 0.50
27 16 0.31
ACGTcount: A:0.39, C:0.28, G:0.13, T:0.20
Consensus pattern (25 bp):
AACACCGACTCAAAGCCTGATAATA
Found at i:26081739 original size:25 final size:25
Alignment explanation
Indices: 26081672--26081754 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 25
26081662 GCCTGATAAT
* *
26081672 TAAACACCGACTCACAGCCTGCTAGA
1 TAAACACCGACTCAAAGCCTACTA-A
* *
26081698 TAAATCACTGGCTCAAAGCCTACTAA
1 TAAA-CACCGACTCAAAGCCTACTAA
* *
26081724 TAAACACCGACTCAAATCCTACAAA
1 TAAACACCGACTCAAAGCCTACTAA
26081749 TAAACA
1 TAAACA
26081755 TCAGCTTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
25 23 0.48
26 9 0.19
27 16 0.33
ACGTcount: A:0.42, C:0.30, G:0.10, T:0.18
Consensus pattern (25 bp):
TAAACACCGACTCAAAGCCTACTAA
Found at i:26087059 original size:28 final size:28
Alignment explanation
Indices: 26086992--26087325 Score: 341
Period size: 28 Copynumber: 12.0 Consensus size: 28
26086982 TGCTCTGTAA
* * * *
26086992 CATAGACCGCCATAAAGGCTT-TCATTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * *
26087019 CATAAATCACCATAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* *
26087047 CATAGATTGCCATAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * * *
26087075 TATAGTTCGCCACAAAGGTTTCCTTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
26087103 CATAGATCGCCACAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
** *
26087131 CATAGATCGATACAAAGGCTTCCCTCTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * * **
26087159 -ATTGTTCACCACAAAGGCTTTTCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* *
26087186 CATATATCACCACAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * *
26087214 CATAGATCGCCGCAAAGGCTTTCTTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * *
26087242 TATA-ATTCGCCACAAAGACTTCCCTTGT
1 CATAGA-TCGCCACAAAGGCTTCCCTTTT
* *
26087270 CATAAATCGCCACAAAGGCTTCCTTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* *
26087298 TATAGTTCGCCACAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
26087326 TCTGACATGT
Statistics
Matches: 250, Mismatches: 53, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
27 38 0.15
28 211 0.84
29 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.13, T:0.34
Consensus pattern (28 bp):
CATAGATCGCCACAAAGGCTTCCCTTTT
Found at i:26087124 original size:84 final size:83
Alignment explanation
Indices: 26086999--26087326 Score: 381
Period size: 84 Copynumber: 3.9 Consensus size: 83
26086989 TAACATAGAC
* * * * *
26086999 CGCCATAAAGGCTTT-CATTTCATAAATCACCATAAAGGCTTCCCTTTTCATAGATTGCCATAAA
1 CGCCACAAAGG-TTTCCTTTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAA
26087063 GGCTTCCCTTTTTATAGTT
65 GGCTTCCCTTTTTATAGTT
* * **
26087082 CGCCACAAAGGTTTCCTTTTTCATAGATCGCCACAAAGGCTTCCCTTTTCATAGATCGATACAAA
1 CGCCACAAAGGTTTCC-TTTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAA
* *
26087147 GGCTTCCC-TCTTATTGTT
65 GGCTTCCCTTTTTATAGTT
* * * *
26087165 CACCACAAAGGCTTTTCTTTTCATATATCACCACAAAGGCTTCCCTTTTCATAGATCGCCGCAAA
1 CGCCACAAAGG-TTTCCTTTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAA
* * *
26087230 GGCTTTCTTTTTTATAATT
65 GGCTTCCCTTTTTATAGTT
* * * * * * *
26087249 CGCCACAAAGACTTCCCTTGTCATAAATCGCCACAAAGGCTTCCTTTTTTATAGTTCGCCACAAA
1 CGCCACAAAG-GTTTCCTTTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAA
26087314 GGCTTCCCTTTTT
65 GGCTTCCCTTTTT
26087327 CTGACATGTT
Statistics
Matches: 204, Mismatches: 36, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
82 3 0.01
83 78 0.38
84 123 0.60
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (83 bp):
CGCCACAAAGGTTTCCTTTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAAG
GCTTCCCTTTTTATAGTT
Found at i:26087292 original size:167 final size:166
Alignment explanation
Indices: 26087005--26087322 Score: 456
Period size: 167 Copynumber: 1.9 Consensus size: 166
26086995 AGACCGCCAT
* * *
26087005 AAAGGCTTTCATTTCATAAATCACCATAAAGGCTTCCCTTTTCATAGATTGCCATAAAGGCTTCC
1 AAAGGCTTTCATTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAAGGCTTCC
* ** * * *
26087070 CTTTTTATAGTTCGCCACAAAGGTTTCCTTTTTCATAGATCGCCACAAAGGCTTCCCTTTTCATA
66 CTTTTTATAATTCGCCACAAAGACTTCCCTTGTCATAAATCGCCACAAAGGCTTCCCTTTTCATA
*
26087135 GATCGATACAAAGGCTTCCCTCTTATTGTTCACCAC
131 GATCGACACAAAGGCTTCCCTCTTATTGTTCACCAC
* * * *
26087171 AAAGGCTTTTCTTTTCATATATCACCACAAAGGCTTCCCTTTTCATAGATCGCCGCAAAGGCTTT
1 AAAGGC-TTTCATTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAAGGCTTC
* * *
26087236 CTTTTTTATAATTCGCCACAAAGACTTCCCTTGTCATAAATCGCCACAAAGGCTTCCTTTTTTAT
65 CCTTTTTATAATTCGCCACAAAGACTTCCCTTGTCATAAATCGCCACAAAGGCTTCCCTTTTCAT
* *
26087301 AGTTCGCCACAAAGGCTTCCCT
130 AGATCGACACAAAGGCTTCCCT
26087323 TTTTCTGACA
Statistics
Matches: 132, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
166 6 0.05
167 126 0.95
ACGTcount: A:0.26, C:0.27, G:0.13, T:0.34
Consensus pattern (166 bp):
AAAGGCTTTCATTTCATAAATCACCACAAAGGCTTCCCTTTTCATAGATCGCCACAAAGGCTTCC
CTTTTTATAATTCGCCACAAAGACTTCCCTTGTCATAAATCGCCACAAAGGCTTCCCTTTTCATA
GATCGACACAAAGGCTTCCCTCTTATTGTTCACCAC
Found at i:26090219 original size:10 final size:10
Alignment explanation
Indices: 26090200--26090234 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
26090190 AAATCTATCG
26090200 AAAA-TAATC
1 AAAATTAATC
26090209 AAAATTAATC
1 AAAATTAATC
*
26090219 AAAATTAATT
1 AAAATTAATC
26090229 AAAATT
1 AAAATT
26090235 CAACATGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 4 0.17
10 20 0.83
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAATTAATC
Found at i:26091351 original size:17 final size:17
Alignment explanation
Indices: 26091329--26091382 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 17
26091319 TTATATGTCT
26091329 TATTTTTTTTGTTTTTA
1 TATTTTTTTTGTTTTTA
*
26091346 TATTTTTTATGTGTTTATTT
1 TATTTTTT-T-TGTTT-TTA
*
26091366 TATTTCTTTTTCTTTTT
1 TATTT-TTTTTGTTTTT
26091383 CAAAAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 8 0.26
18 3 0.10
19 9 0.29
20 8 0.26
21 3 0.10
ACGTcount: A:0.11, C:0.04, G:0.06, T:0.80
Consensus pattern (17 bp):
TATTTTTTTTGTTTTTA
Found at i:26097310 original size:16 final size:17
Alignment explanation
Indices: 26097291--26097322 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26097281 TTTTTAAATA
26097291 TTTTTATTTTT-CTCTC
1 TTTTTATTTTTACTCTC
26097307 TTTTTATTTTTACTCT
1 TTTTTATTTTTACTCT
26097323 GCCAAGCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTATTTTTACTCTC
Found at i:26100384 original size:43 final size:43
Alignment explanation
Indices: 26100337--26100428 Score: 184
Period size: 43 Copynumber: 2.1 Consensus size: 43
26100327 ATCGAACTCG
26100337 AAATAATATATAAAACAAACTTAATTCCAAAGAAAGGGTACAT
1 AAATAATATATAAAACAAACTTAATTCCAAAGAAAGGGTACAT
26100380 AAATAATATATAAAACAAACTTAATTCCAAAGAAAGGGTACAT
1 AAATAATATATAAAACAAACTTAATTCCAAAGAAAGGGTACAT
26100423 AAATAA
1 AAATAA
26100429 AACAACATGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.58, C:0.11, G:0.09, T:0.23
Consensus pattern (43 bp):
AAATAATATATAAAACAAACTTAATTCCAAAGAAAGGGTACAT
Found at i:26100798 original size:24 final size:24
Alignment explanation
Indices: 26100760--26101059 Score: 135
Period size: 24 Copynumber: 12.8 Consensus size: 24
26100750 TGAATTGGAT
* *
26100760 AATTTACAATAAATAATATATAATA
1 AATTTAAAAT-AATAATATATGATA
* *
26100785 AATTTGAAATAATAATACAT-ATAA
1 AATTTAAAATAATAATATATGAT-A
*
26100809 AATTT-AAA-AAT--TTTGATGAT-
1 AATTTAAAATAATAATAT-ATGATA
* *
26100829 AATTCTAAAATAATCATAAATGATA
1 AATT-TAAAATAATAATATATGATA
** * *
26100854 AATCCAAAATAATAGTATATAATA
1 AATTTAAAATAATAATATATGATA
* *
26100878 AACTT-AAA-AATATTA-ATGATA
1 AATTTAAAATAATAATATATGATA
* * *
26100899 AATTTGAAATAA-ATATACATAATA
1 AATTTAAAATAATA-ATATATGATA
** * *
26100923 AATTTAAAATAATGTTA-ACGATG
1 AATTTAAAATAATAATATATGATA
* *
26100946 AATTTAAATTAATAACAT-TGATA
1 AATTTAAAATAATAATATATGATA
* *
26100969 AA-TTACAAATAATAAAACATGATA
1 AATTTA-AAATAATAATATATGATA
* **
26100993 AATCTAAAATAATAATATACAATA
1 AATTTAAAATAATAATATATGATA
* * * *
26101017 AACTT-AGATAATATTA-ATGATT
1 AATTTAAAATAATAATATATGATA
*
26101039 AATTTAATGATAATAAGTATA
1 AATTTAA-AATAATAA-TATA
26101060 AACATTCAAA
Statistics
Matches: 203, Mismatches: 50, Indels: 43
0.69 0.17 0.15
Matches are distributed among these distances:
20 5 0.02
21 12 0.06
22 28 0.14
23 55 0.27
24 86 0.42
25 16 0.08
26 1 0.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (24 bp):
AATTTAAAATAATAATATATGATA
Found at i:26101029 original size:70 final size:69
Alignment explanation
Indices: 26100848--26101029 Score: 161
Period size: 70 Copynumber: 2.6 Consensus size: 69
26100838 ATAATCATAA
* * * * ** **
26100848 ATGATAAATCCAAAATAATAGTATATAATAAACTTAAAAATATTAATGATAAATTTGAAATAAAT
1 ATGATAAATCTAAAATAATAATATACAATAAACTTAATAATAACAATGATAAATTACAAATAAAT
*
26100913 ATAC
66 AAAC
* * ** * * * *
26100917 ATAATAAATTTAAAATAATGTTA-ACGATGAATTTAAATTAATAACATTGATAAATTACAAAT-A
1 ATGATAAATCTAAAATAATAATATACAATAAACTT-AA-TAATAACAATGATAAATTACAAATAA
26100980 ATAAAAC
64 AT-AAAC
26100987 ATGATAAATCTAAAATAATAATATACAATAAACTTAGATAATA
1 ATGATAAATCTAAAATAATAATATACAATAAACTTA-ATAATA
26101030 TTAATGATTA
Statistics
Matches: 85, Mismatches: 23, Indels: 9
0.73 0.20 0.08
Matches are distributed among these distances:
68 7 0.08
69 23 0.27
70 46 0.54
71 9 0.11
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.32
Consensus pattern (69 bp):
ATGATAAATCTAAAATAATAATATACAATAAACTTAATAATAACAATGATAAATTACAAATAAAT
AAAC
Found at i:26101872 original size:19 final size:19
Alignment explanation
Indices: 26101820--26101889 Score: 95
Period size: 19 Copynumber: 3.6 Consensus size: 19
26101810 TGATTTCTTT
26101820 TTTCCTCCCTTTACACTGA
1 TTTCCTCCCTTTACACTGA
** *
26101839 TTTTTTTCTCTTTACACTGA
1 -TTTCCTCCCTTTACACTGA
*
26101859 TTTCCCCCCTTTACACTGA
1 TTTCCTCCCTTTACACTGA
26101878 TTTCCTCCCTTT
1 TTTCCTCCCTTT
26101890 TTTATGAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 26 0.62
20 16 0.38
ACGTcount: A:0.13, C:0.34, G:0.04, T:0.49
Consensus pattern (19 bp):
TTTCCTCCCTTTACACTGA
Found at i:26104154 original size:21 final size:21
Alignment explanation
Indices: 26104128--26104167 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26104118 TACATTTATG
26104128 GGCATTAAAACAAGCCTACGA
1 GGCATTAAAACAAGCCTACGA
* *
26104149 GGCATTCAAACGAGCCTAC
1 GGCATTAAAACAAGCCTAC
26104168 AATGCCTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.28, G:0.20, T:0.15
Consensus pattern (21 bp):
GGCATTAAAACAAGCCTACGA
Found at i:26105018 original size:38 final size:38
Alignment explanation
Indices: 26104976--26105118 Score: 146
Period size: 38 Copynumber: 3.7 Consensus size: 38
26104966 ACACCAACAC
*
26104976 GAAGCTTGCTAGGCATC-AAGCCTGATAAACACCGGCAT
1 GAAGCCTGCTAGGC-TCAAAGCCTGATAAACACCGGCAT
* * * * *
26105014 GAAGCTTGCTAGGCATC-AAGCTTGATAAACATCGGAAC
1 GAAGCCTGCTAGGC-TCAAAGCCTGATAAACACCGGCAT
* * * * *
26105052 AAAGCCTGCTAGGCTCAAAGCCCGATAAGTCTCCAGCAT
1 GAAGCCTGCTAGGCTCAAAGCCTGATAA-ACACCGGCAT
26105091 GAAGCCTGCTAGGCTCAAAGCCTGATAA
1 GAAGCCTGCTAGGCTCAAAGCCTGATAA
26105119 GTCACTAGCA
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
37 2 0.02
38 55 0.63
39 30 0.34
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (38 bp):
GAAGCCTGCTAGGCTCAAAGCCTGATAAACACCGGCAT
Found at i:26105103 original size:39 final size:38
Alignment explanation
Indices: 26105052--26105195 Score: 162
Period size: 39 Copynumber: 3.7 Consensus size: 38
26105042 ACATCGGAAC
* *
26105052 AAAGCCTGCTAGGCTCAAAGCCCGATAAGTCTCCAGCA
1 AAAGCCTGCTAGGCTCAAAGCCCGATAAGTCACTAGCA
* *
26105090 TGAAGCCTGCTAGGCTCAAAGCCTGATAAGTCACTAGCA
1 -AAAGCCTGCTAGGCTCAAAGCCCGATAAGTCACTAGCA
* * * *
26105129 CAAAGCTTGTTAGGCTCAAAGCTCAATAAGTCACTAGCA
1 -AAAGCCTGCTAGGCTCAAAGCCCGATAAGTCACTAGCA
* * *
26105168 CAAGGCCTGCTAGGCTCAAGGCTCGATA
1 -AAAGCCTGCTAGGCTCAAAGCCCGATA
26105196 CAATACACCG
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (38 bp):
AAAGCCTGCTAGGCTCAAAGCCCGATAAGTCACTAGCA
Found at i:26105911 original size:42 final size:41
Alignment explanation
Indices: 26105822--26106056 Score: 213
Period size: 42 Copynumber: 5.6 Consensus size: 41
26105812 CAAACAAAAA
*
26105822 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTATTAAG
* *
26105863 TGCCGCTAAAGAACATGATCTTTAGTGGCGATTTTTATTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTATTAAG
* * * * * * *
26105905 TGCCGCTGAAA-ATCATGTTCTTTAGTGGCGTTTGTGAATATG
1 CGCCGCT-AAAGAACATGATCTTTAGCGGCGTTT-TTATTAAG
* * ** *
26105947 CGCCGCTAAAGAACATGTTCTTTAACGGCGTTTTGTAAAAAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-TATTAAG
* * * *
26105989 CGCCGCTAGAGATCATGATATTTAGCGGCGCTTTTT-TTACAAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTATT--AAG
*
26106032 CGTCGCTAAAGAACATGATCTTTAG
1 CGCCGCTAAAGAACATGATCTTTAG
26106057 TGACGCTTTT
Statistics
Matches: 159, Mismatches: 27, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
41 35 0.22
42 93 0.58
43 31 0.19
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (41 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTATTAAG
Found at i:26106274 original size:7 final size:7
Alignment explanation
Indices: 26106257--26106287 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
26106247 TATTTTTGCA
26106257 AAAATGTT
1 AAAA-GTT
26106265 AAAAGTT
1 AAAAGTT
26106272 AAAAGTT
1 AAAAGTT
26106279 AAAAGTT
1 AAAAGTT
26106286 AA
1 AA
26106288 GATGATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.83
8 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (7 bp):
AAAAGTT
Found at i:26106281 original size:14 final size:15
Alignment explanation
Indices: 26106257--26106297 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
26106247 TATTTTTGCA
26106257 AAAATGTTAAAAGTT
1 AAAATGTTAAAAGTT
26106272 AAAA-GTTAAAAGTT
1 AAAATGTTAAAAGTT
* *
26106286 AAGATGATAAAA
1 AAAATGTTAAAA
26106298 ATATTTATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.27
Consensus pattern (15 bp):
AAAATGTTAAAAGTT
Found at i:26106486 original size:21 final size:21
Alignment explanation
Indices: 26106460--26106510 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
26106450 TTCTTTTGAA
* *
26106460 CCTCTGGTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
*
26106481 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
26106502 CCTCTGCTT
1 CCTCTGCTT
26106511 TAAGTTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.45, G:0.20, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:26106563 original size:87 final size:87
Alignment explanation
Indices: 26106395--26106554 Score: 212
Period size: 87 Copynumber: 1.8 Consensus size: 87
26106385 TTCTGCTCTA
* * *
26106395 CTCTGCTTCTCTCGATGCCGAATCAGGTTTAAGTTGTAGCTAGAGTTCTTCATATTTCTTTTGAA
1 CTCTGCTTCCCTCGATGCCGAATCAGCTTTAAGTTGTAGCTAGAGTTCTTCATATTTCCTTTGAA
*** *
26106460 CCTCTGGTTCTCTCGCTGCAGC
66 CCTCAACTTCGCTCGCTGCAGC
* ** * *
26106482 CTCTGCTTCCCTCGCTGCCGCCTCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
1 CTCTGCTTCCCTCGATGCCGAATCAGCTTTAAGTTGTAGCTAGAGTTCTTCATATTTCCTTTGAA
26106547 CCTCAACT
66 CCTCAACT
26106555 GTGGTCGCTT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 62 1.00
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.39
Consensus pattern (87 bp):
CTCTGCTTCCCTCGATGCCGAATCAGCTTTAAGTTGTAGCTAGAGTTCTTCATATTTCCTTTGAA
CCTCAACTTCGCTCGCTGCAGC
Found at i:26112095 original size:16 final size:16
Alignment explanation
Indices: 26112076--26112115 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
26112066 GAATGCAAGC
*
26112076 TATGTAAGTTGTATT-T
1 TATGTAAGTTAT-TTAT
26112092 TATGTAAGTTATTTAT
1 TATGTAAGTTATTTAT
26112108 TATGTAAG
1 TATGTAAG
26112116 CTAAGTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (16 bp):
TATGTAAGTTATTTAT
Found at i:26112117 original size:41 final size:41
Alignment explanation
Indices: 26112072--26112188 Score: 137
Period size: 41 Copynumber: 2.9 Consensus size: 41
26112062 TGTAGAATGC
* *
26112072 AAGCTATGTAAGTTGTATTTTATGTAAGTTATTTATTATGT
1 AAGCTATGTAAGTTGTATATTATGTAAGTTATGTATTATGT
* *
26112113 AAGCTAAGTAAGTTG-AGTATTATGTAAGCTATGTATTATGT
1 AAGCTATGTAAGTTGTA-TATTATGTAAGTTATGTATTATGT
* * * * *
26112154 TAGTTATGTAAGTTATGTATTATGTATGTTATGTA
1 AAGCTATGTAAGTTGTATATTATGTAAGTTATGTA
26112189 AGTTCTGTAG
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 1 0.02
41 62 0.98
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.47
Consensus pattern (41 bp):
AAGCTATGTAAGTTGTATATTATGTAAGTTATGTATTATGT
Found at i:26112123 original size:25 final size:25
Alignment explanation
Indices: 26112095--26112165 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 25
26112085 TGTATTTTAT
26112095 GTAAGTTATTTATTATGTAAGCTAA
1 GTAAGTTATTTATTATGTAAGCTAA
* *
26112120 GTAAGTTGA-GTATTATGTAAGCTAT
1 GTAAGTT-ATTTATTATGTAAGCTAA
26112145 GT-A-TTATGTTAGTTATGTAAG
1 GTAAGTTAT-TTA-TTATGTAAG
26112166 TTATGTATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 1 0.03
23 2 0.05
24 3 0.08
25 32 0.82
26 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.44
Consensus pattern (25 bp):
GTAAGTTATTTATTATGTAAGCTAA
Found at i:26112170 original size:25 final size:25
Alignment explanation
Indices: 26112132--26112197 Score: 98
Period size: 25 Copynumber: 2.6 Consensus size: 25
26112122 AAGTTGAGTA
*
26112132 TTATGTAAGCTATGTATTATGT-TAG
1 TTATGTAAGTTATGTATTATGTAT-G
26112157 TTATGTAAGTTATGTATTATGTATG
1 TTATGTAAGTTATGTATTATGTATG
*
26112182 TTATGTAAGTTCTGTA
1 TTATGTAAGTTATGTA
26112198 GAATGTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.20, T:0.50
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTATG
Found at i:26112176 original size:16 final size:16
Alignment explanation
Indices: 26112120--26112210 Score: 71
Period size: 16 Copynumber: 5.6 Consensus size: 16
26112110 TGTAAGCTAA
26112120 GTAAGTTGA-GTATTAT
1 GTAAGTT-ATGTATTAT
*
26112136 GTAAGCTATGTATTAT
1 GTAAGTTATGTATTAT
*
26112152 GTTAGTTATGTAAGTTAT
1 GTAAGTTATGT-A-TTAT
26112170 GT-A-TTATGTATGTTAT
1 GTAAGTTATGTA--TTAT
* **
26112186 GTAAGTTCTGTAGAAT
1 GTAAGTTATGTATTAT
26112202 GTAAGTTAT
1 GTAAGTTAT
26112211 CTTAATATTA
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
15 2 0.03
16 45 0.73
17 3 0.05
18 12 0.19
ACGTcount: A:0.30, C:0.02, G:0.22, T:0.46
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:26112203 original size:25 final size:25
Alignment explanation
Indices: 26112132--26112210 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 25
26112122 AAGTTGAGTA
* ** *
26112132 TTATGTAAGCTATGTATTATGTTAG
1 TTATGTAAGTTATGTAGAATGTAAG
** *
26112157 TTATGTAAGTTATGTATTATGTATG
1 TTATGTAAGTTATGTAGAATGTAAG
*
26112182 TTATGTAAGTTCTGTAGAATGTAAG
1 TTATGTAAGTTATGTAGAATGTAAG
26112207 TTAT
1 TTAT
26112211 CTTAATATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.29, C:0.03, G:0.20, T:0.48
Consensus pattern (25 bp):
TTATGTAAGTTATGTAGAATGTAAG
Found at i:26112204 original size:66 final size:66
Alignment explanation
Indices: 26112010--26112206 Score: 218
Period size: 66 Copynumber: 3.0 Consensus size: 66
26112000 TTCACTTTTT
* * * * * *
26112010 TATGTAAGTTGTATTTTATGTAAGCTATTTATTATGTAAACTACGTAAATTGTGTAGAATGCAAG
1 TATGTAAGTTGTATGTTATGTAAGTTATTTATTATGTAAGCTAAGTAAGTTGTGTAGAATGTAAG
26112075 C
66 C
* * **
26112076 TATGTAAGTTGTATTTTATGTAAGTTATTTATTATGTAAGCTAAGTAAGTTGAGTATTATGTAAG
1 TATGTAAGTTGTATGTTATGTAAGTTATTTATTATGTAAGCTAAGTAAGTTGTGTAGAATGTAAG
26112141 C
66 C
* * * * * *
26112142 TATGT-ATTATGT-TAGTTATGTAAGTTATGTATTATGTATGTTATGTAAGTTCTGTAGAATGTA
1 TATGTAAGT-TGTAT-GTTATGTAAGTTATTTATTATGTAAGCTAAGTAAGTTGTGTAGAATGTA
26112205 AG
64 AG
26112207 TTATCTTAAT
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
65 3 0.03
66 108 0.97
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (66 bp):
TATGTAAGTTGTATGTTATGTAAGTTATTTATTATGTAAGCTAAGTAAGTTGTGTAGAATGTAAG
C
Found at i:26112249 original size:20 final size:20
Alignment explanation
Indices: 26112200--26112250 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
26112190 GTTCTGTAGA
26112200 ATGTAAGTTATCTTAATATT
1 ATGTAAGTTATCTTAATATT
* *
26112220 ATATAAGTTATCTTAATTTT
1 ATGTAAGTTATCTTAATATT
*
26112240 ATGTAGGTTAT
1 ATGTAAGTTAT
26112251 GCAAGCTATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.51
Consensus pattern (20 bp):
ATGTAAGTTATCTTAATATT
Found at i:26115239 original size:7 final size:7
Alignment explanation
Indices: 26115219--26115258 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
26115209 ATTAACTATA
26115219 AACCCCT
1 AACCCCT
26115226 AAACCCCT
1 -AACCCCT
26115234 AACCCCT
1 AACCCCT
*
26115241 AACCCTT
1 AACCCCT
26115248 AACCCC-
1 AACCCCT
26115254 AACCC
1 AACCC
26115259 TTAAACCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 5 0.17
7 18 0.60
8 7 0.23
ACGTcount: A:0.33, C:0.55, G:0.00, T:0.12
Consensus pattern (7 bp):
AACCCCT
Found at i:26115265 original size:14 final size:14
Alignment explanation
Indices: 26115219--26115262 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
26115209 ATTAACTATA
*
26115219 AACCCCTAAACCCCT
1 AACCCCT-AACCCTT
26115234 AACCCCTAACCCTT
1 AACCCCTAACCCTT
26115248 AACCCC-AACCCTT
1 AACCCCTAACCCTT
26115261 AA
1 AA
26115263 ACCATAATCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
13 9 0.32
14 12 0.43
15 7 0.25
ACGTcount: A:0.34, C:0.50, G:0.00, T:0.16
Consensus pattern (14 bp):
AACCCCTAACCCTT
Found at i:26115522 original size:21 final size:22
Alignment explanation
Indices: 26115496--26115541 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
26115486 TAACCCCAAT
26115496 CCTTAAACC-ATAT-CCATAAAC
1 CCTT-AACCTATATCCCATAAAC
*
26115517 CCTTAACCTATATCCCTTAAAC
1 CCTTAACCTATATCCCATAAAC
26115539 CCT
1 CCT
26115542 AAATTAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 4 0.18
21 8 0.36
22 10 0.45
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (22 bp):
CCTTAACCTATATCCCATAAAC
Found at i:26126217 original size:17 final size:19
Alignment explanation
Indices: 26126171--26126206 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26126161 ATATATAAAA
26126171 AATC-AGAAAAATATATAT
1 AATCTAGAAAAATATATAT
*
26126189 TATCTAGAAAAATATATA
1 AATCTAGAAAAATATATA
26126207 AATTATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 3 0.19
19 13 0.81
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (19 bp):
AATCTAGAAAAATATATAT
Found at i:26126323 original size:27 final size:30
Alignment explanation
Indices: 26126270--26126330 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 30
26126260 AAATTTGTTG
26126270 AAATTTATAATATTATTAAAAAATGTAAAA
1 AAATTTATAATATTATTAAAAAATGTAAAA
**
26126300 AAATTTA-AA-ATTA-TAAAAGTTGTAAAA
1 AAATTTATAATATTATTAAAAAATGTAAAA
26126327 AAAT
1 AAAT
26126331 ATTTTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 16 0.55
28 4 0.14
29 2 0.07
30 7 0.24
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (30 bp):
AAATTTATAATATTATTAAAAAATGTAAAA
Found at i:26131779 original size:41 final size:41
Alignment explanation
Indices: 26131721--26131802 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
26131711 AACCTAATTG
*
26131721 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAAATACTAAAAGATAA
*
26131762 GGAAAATAATTCTCTTATTCTAATAAAATACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAAATACTAAAAGATAA
26131803 AATAAAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (41 bp):
GGAAAATAATTCCCTTATTCTAATAAAATACTAAAAGATAA
Found at i:26136549 original size:45 final size:45
Alignment explanation
Indices: 26136498--26136611 Score: 167
Period size: 45 Copynumber: 2.5 Consensus size: 45
26136488 ACACTGTTCA
*
26136498 ATTGGTTTGACTCTCTTCTTTA-TTGGTTAGTTGGGAGTCAACCAG
1 ATTGGTTTGACTCTCTTCTTGACTT-GTTAGTTGGGAGTCAACCAG
*
26136543 ATTGGTTTGACTCTCTTCTTGACTTGTTAGTTGGGAGTTAACCAG
1 ATTGGTTTGACTCTCTTCTTGACTTGTTAGTTGGGAGTCAACCAG
* * *
26136588 ATTGATTTGGCTCTATTCTTGACT
1 ATTGGTTTGACTCTCTTCTTGACT
26136612 GGTCTACCAC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 61 0.97
46 2 0.03
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.44
Consensus pattern (45 bp):
ATTGGTTTGACTCTCTTCTTGACTTGTTAGTTGGGAGTCAACCAG
Found at i:26138447 original size:22 final size:21
Alignment explanation
Indices: 26138422--26138466 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26138412 ACACGGCTGA
26138422 GTGCCTTATTTCATACGGGCGT
1 GTGCC-TATTTCATACGGGCGT
* * *
26138444 GTGCCTCTTTGATATGGGCGT
1 GTGCCTATTTCATACGGGCGT
26138465 GT
1 GT
26138467 TGACCCTACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.11, C:0.20, G:0.31, T:0.38
Consensus pattern (21 bp):
GTGCCTATTTCATACGGGCGT
Found at i:26140151 original size:25 final size:25
Alignment explanation
Indices: 26140117--26140184 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
26140107 ACATATTAGT
* *
26140117 TGAAAAGCCTTTGTGGCGAGATACC
1 TGAAAAGCCTTTGTGGCGAAATAAC
**
26140142 TGAAAAGCCTTTGTGGAAAAATAAC
1 TGAAAAGCCTTTGTGGCGAAATAAC
26140167 TGAAAAGCCTTTGTGGCG
1 TGAAAAGCCTTTGTGGCG
26140185 TATTACAGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (25 bp):
TGAAAAGCCTTTGTGGCGAAATAAC
Found at i:26153724 original size:14 final size:14
Alignment explanation
Indices: 26153705--26153733 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26153695 GAGATAATAG
26153705 ACATGATTTAGTAA
1 ACATGATTTAGTAA
26153719 ACATGATTTAGTAA
1 ACATGATTTAGTAA
26153733 A
1 A
26153734 GTATGCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (14 bp):
ACATGATTTAGTAA
Found at i:26155247 original size:16 final size:17
Alignment explanation
Indices: 26155222--26155254 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26155212 TTCATCACAC
*
26155222 TTAGGTTAA-TTTGCAT
1 TTAGGATAATTTTGCAT
26155238 TTAGGATAATTTTGCAT
1 TTAGGATAATTTTGCAT
26155255 CTAGTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.27, C:0.06, G:0.18, T:0.48
Consensus pattern (17 bp):
TTAGGATAATTTTGCAT
Found at i:26156910 original size:20 final size:20
Alignment explanation
Indices: 26156885--26156948 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
26156875 GCACATCGTG
26156885 CCCCTGTTTGTACTTCAGTA
1 CCCCTGTTTGTACTTCAGTA
** *
26156905 CCCCTGAATGTA-TAT-ACGTG
1 CCCCTGTTTGTACT-TCA-GTA
*
26156925 CCCC-GTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCAGTA
26156944 CCCCT
1 CCCCT
26156949 AATTGCACAT
Statistics
Matches: 32, Mismatches: 7, Indels: 10
0.65 0.14 0.20
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.16, C:0.33, G:0.17, T:0.34
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCAGTA
Done.