Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 86 of 216
Found at i:26453124 original size:21 final size:21
Alignment explanation
Indices: 26453099--26453185 Score: 81
Period size: 21 Copynumber: 4.2 Consensus size: 21
26453089 AAATCAATCA
26453099 AAAAATAAAAATCAAAAAAATG
1 AAAAATAAAAATCAAAAAAA-G
*
26453121 AAAAA-AAAAAACAAAAAAAG
1 AAAAATAAAAATCAAAAAAAG
* **
26453141 AAAAAATCAAAATCAAAATGAG
1 -AAAAATAAAAATCAAAAAAAG
**
26453163 AATGATAAAAAT--AAAAAAG
1 AAAAATAAAAATCAAAAAAAG
26453182 AAAA
1 AAAA
26453186 GGAAAAAGGA
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
19 7 0.14
20 1 0.02
21 27 0.53
22 16 0.31
ACGTcount: A:0.78, C:0.05, G:0.07, T:0.10
Consensus pattern (21 bp):
AAAAATAAAAATCAAAAAAAG
Found at i:26453158 original size:14 final size:14
Alignment explanation
Indices: 26453072--26453158 Score: 56
Period size: 14 Copynumber: 6.3 Consensus size: 14
26453062 TCAATCAATA
* *
26453072 AAAAAATCGAAATA
1 AAAAAATCAAAATC
26453086 AAAAAATC--AATC
1 AAAAAATCAAAATC
*
26453098 AAAAAATAAAAATC
1 AAAAAATCAAAATC
*
26453112 AAAAAAATGAAAA--
1 -AAAAAATCAAAATC
* **
26453125 AAAAAAACAAAAAAAG
1 AAAAAATC--AAAATC
26453141 AAAAAATCAAAATC
1 AAAAAATCAAAATC
26453155 AAAA
1 AAAA
26453159 TGAGAATGAT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
12 16 0.28
14 24 0.41
15 11 0.19
16 7 0.12
ACGTcount: A:0.78, C:0.08, G:0.03, T:0.10
Consensus pattern (14 bp):
AAAAAATCAAAATC
Found at i:26453185 original size:7 final size:6
Alignment explanation
Indices: 26453176--26453211 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
26453166 GATAAAAATA
* *
26453176 AAAAAG AAAAGG AAAAAG GAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
26453212 GAGAGGCCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:26453198 original size:18 final size:18
Alignment explanation
Indices: 26453177--26453213 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
26453167 ATAAAAATAA
*
26453177 AAAAGAAAAGGAAAAAGG
1 AAAAGAAAAAGAAAAAGG
26453195 AAAAGAAAAAGAAAAAGG
1 AAAAGAAAAAGAAAAAGG
26453213 A
1 A
26453214 GAGGCCAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAAGAAAAAGG
Found at i:26455474 original size:88 final size:88
Alignment explanation
Indices: 26455308--26455477 Score: 211
Period size: 88 Copynumber: 1.9 Consensus size: 88
26455298 AACAGATCAG
* *
26455308 TGAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGCAGATCGAGAACACTAGCCCTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGCAGATCGAGAACACTAACCCTACCT
**
26455373 CCCTCGGTTGCAGTGGAGCAGGT
66 CCCTCGGCAGCAGTGGAGCAGGT
* **
26455396 TGAAGATAGCAGATCTTGCCTTCCTACA-TGGACAGCGAAGTAGATCGAAGATAC-C-AATTCTA
1 TGAAGATAGCAGATCTTGCCTTCCTACACT-GACAGCGAAGCAGATCG-AGA-ACACTAACCCTA
* *
26455458 TCTCCCTGGGCAGCAGTGGA
63 CCTCCCTCGGCAGCAGTGGA
26455478 ATAGATTGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
87 1 0.01
88 63 0.90
89 4 0.06
90 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (88 bp):
TGAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGCAGATCGAGAACACTAACCCTACCT
CCCTCGGCAGCAGTGGAGCAGGT
Found at i:26455489 original size:43 final size:44
Alignment explanation
Indices: 26455436--26455551 Score: 112
Period size: 44 Copynumber: 2.7 Consensus size: 44
26455426 GACAGCGAAG
* *
26455436 TAGATCGAAGA-TACCAATTCTATCTCCCTGGGCAGCAGTGGAA
1 TAGATTGAAGATTACCAATCCTATCTCCCTGGGCAGCAGTGGAA
*** * * *
26455479 TAGATTGAAGATTGTGAGTCCTATCTCCCTGGTCAGTAGTGGAA
1 TAGATTGAAGATTACCAATCCTATCTCCCTGGGCAGCAGTGGAA
* *
26455523 TAGGTTGAA-ATTA-CAGATCTTATCTCCCT
1 TAGATTGAAGATTACCA-ATCCTATCTCCCT
26455552 AACCAGTAGT
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
42 1 0.02
43 24 0.41
44 33 0.57
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (44 bp):
TAGATTGAAGATTACCAATCCTATCTCCCTGGGCAGCAGTGGAA
Found at i:26455695 original size:131 final size:131
Alignment explanation
Indices: 26455495--26456115 Score: 924
Period size: 131 Copynumber: 4.7 Consensus size: 131
26455485 GAAGATTGTG
* *
26455495 AGTCCTATCTCCCTGGTCAGTAGTGGAATAGGTT-GAAATTACAGATCTTATCTCCCTAACCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* ** *
26455559 AGTGGAGTAGATCGAAGACAACGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCAT
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCAC
26455624 A
131 A
*
26455625 AGTCCTATCTCCCTGGTCAGCACTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * * * *
26455690 AGTGGAGCAAATCAAAGATGGCGAATCTTATCTCCCCCAGGAGTAGGGAAGCAGATTTAACCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCAC
26455755 A
131 A
* * * *
26455756 A-ACTCTATCTCCCTGGACAGCAGTGGAATAGGTT-GAAGATTATAGACCTTATCTCCCTAAGCA
1 AGTC-CTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAA-ATTACAGATCTTATCTCCCTAAGCA
* * * *
26455819 GTAGTAGAGCAGATCGAAGACGGCAAATCTTATCGTCCCTAGGAGTAGGGAAGCAGATTTAAGCC
64 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCC
26455884 ACA
129 ACA
** * * *
26455887 AGTATTATCTCCCTGGTTAGCAGTGGAATAGGTTGGAAATTAAAGATCTCATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
26455952 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTAGGAGTAGGGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCAC
26456017 A
131 A
* *
26456018 AGTCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
26456083 AGTGGAGCAGATCGAAAATGGCAAATCTTATCT
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCT
26456116 CCCTGAGGTT
Statistics
Matches: 439, Mismatches: 47, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
130 36 0.08
131 400 0.91
132 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (131 bp):
AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCAC
A
Found at i:26456111 original size:44 final size:44
Alignment explanation
Indices: 26455932--26456119 Score: 118
Period size: 44 Copynumber: 4.3 Consensus size: 44
26455922 GAAATTAAAG
* * * *
26455932 ATCTCATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAA
* ** *
26455976 ATCTTATCTTCCCT-AGGAGTAG-GGAAGCAGAT--TTAA-GCCACA
1 ATCTTATC-TCCCTAAGCAGTAGTGG-AGCAGATCGAAAATGGCA-A
* ** * ** * * * * *
26456018 AGTCCTATCT-CCTTGGTCAGCAGTGGAATAGGTTGGAAATTGCAG
1 A-TCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAAATGGCAA
26456063 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAA
26456107 ATCTTATCTCCCT
1 ATCTTATCTCCCT
26456120 GAGGTTGCAG
Statistics
Matches: 103, Mismatches: 30, Indels: 22
0.66 0.19 0.14
Matches are distributed among these distances:
41 5 0.05
42 5 0.05
43 16 0.16
44 63 0.61
45 12 0.12
46 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCAA
Found at i:26456286 original size:44 final size:44
Alignment explanation
Indices: 26456233--26456533 Score: 143
Period size: 44 Copynumber: 6.9 Consensus size: 44
26456223 TAGATCGCAT
*
26456233 CAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAG
1 CAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* * *
26456277 CAGGTCTTATC-CCTCTGAAGTTGCAGTGGGGCAGACTGAAG-ATGG
1 CAGGTCTTATCTCC-CTGAGGTTGCAGTGGAGCAGACTG-AGTA-AG
* * * * ** * * **
26456322 C-GGATTTTACCTCCTTGAGGTTACAGTGGAATACATTGAAGCCA-
1 CAGG-TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTG-AGTAAG
* * * * * * * * * *
26456366 CTA-ATCCTATCTCCTTGAGGTTGTAGCGGAACGGATTAAAATAA-
1 C-AGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-GAGTAAG
* * * * * * * * *
26456410 AAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T-CG-CAT
1 CAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
*
26456451 CAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAG
1 CAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* * *
26456495 CAGGTTTTATCCCCCTGAGGTTGCAGTGGGGCAGACTGA
1 CAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGA
26456534 AGATGACGGA
Statistics
Matches: 185, Mismatches: 58, Indels: 28
0.68 0.21 0.10
Matches are distributed among these distances:
40 1 0.01
41 28 0.15
42 1 0.01
43 5 0.03
44 120 0.65
45 28 0.15
46 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (44 bp):
CAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
Found at i:26456373 original size:218 final size:218
Alignment explanation
Indices: 26456114--26456925 Score: 1259
Period size: 218 Copynumber: 3.7 Consensus size: 218
26456104 CAAATCTTAT
* ** * * *
26456114 CTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCC-CATAATCCTATATCCCTTAAGTTGCAGTGGA
1 CTCCCTGAGGTTACAGTGGAATACATTGAAGCCAC-TAATCCTATCTCCCTTAAGTTGCAGCGGA
* * **
26456178 GCAGATAAAAATAATGGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTAT
65 GCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTAT
*
26456243 CTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCTTATCCCTCTGAAGTTGCAGTGGGG
130 CTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGG
*
26456308 CAGACTGAAGATGGCGGATTTTAC
195 CAGACTGAAGATGACGGATTTTAC
* * *
26456332 CTCCTTGAGGTTACAGTGGAATACATTGAAGCCACTAATCCTATCT-CCTTGAGGTTGTAGCGGA
1 CTCCCTGAGGTTACAGTGGAATACATTGAAGCCACTAATCCTATCTCCCTT-AAGTTGCAGCGGA
*
26456396 ACGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTAT
65 GCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTAT
* *
26456461 CTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTTTTATCCCCCTGAGGTTGCAGTGGGG
130 CTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGG
26456526 CAGACTGAAGATGACGGATTTTAC
195 CAGACTGAAGATGACGGATTTTAC
* * * * *
26456550 CTCCCTGAGGTTATAGTGGAGTACATTGAAGCCACTAATCCTATCTCCCTGAGGTTGCAGCGGGG
1 CTCCCTGAGGTTACAGTGGAATACATTGAAGCCACTAATCCTATCTCCCTTAAGTTGCAGCGGAG
26456615 CGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATC
66 CGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATC
* * * * * *
26456680 TCCCTGAGGATGCAGCAGAGCAAACTGAGTAAGCAAGTCTTATCCCCCTAAAGTTGCAGTGGGGT
131 TCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGGC
*
26456745 AGACAGAAGATGACGGATTTTAC
196 AGACTGAAGATGACGGATTTTAC
* * **
26456768 CTCCCTGAGGTTACAGTGGAATACATTGAACCCACTAATCCTATCTCCCTAAAGTTGCAGTAGAG
1 CTCCCTGAGGTTACAGTGGAATACATTGAAGCCACTAATCCTATCTCCCTTAAGTTGCAGCGGAG
26456833 CGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATC
66 CGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATC
* * *
26456898 TCCCTGAAGTTGCAGTGGGGCAGACTGA
131 TCCCTGAGGTTGCAGCGGAGCAGACTGA
26456926 AGATGGCGAA
Statistics
Matches: 543, Mismatches: 48, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
217 4 0.01
218 535 0.99
219 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (218 bp):
CTCCCTGAGGTTACAGTGGAATACATTGAAGCCACTAATCCTATCTCCCTTAAGTTGCAGCGGAG
CGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATC
TCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGGC
AGACTGAAGATGACGGATTTTAC
Found at i:26462026 original size:50 final size:50
Alignment explanation
Indices: 26461968--26462149 Score: 168
Period size: 50 Copynumber: 3.7 Consensus size: 50
26461958 GTAGTTAAAA
* **
26461968 AGATTAAAGATACAACGGTAAATCTTACTTTGCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCTACAACGGTAAATCTTACTTCCCAGGCAGTGCAGTGGAAC
* * * * * * * ** *
26462018 AGATTAAAGCCACAACGGCAAATCTTGCTTCCCCGACATTACAGTTAAAA
1 AGATTAAAGCTACAACGGTAAATCTTACTTCCCAGGCAGTGCAGTGGAAC
* * *
26462068 AAATTAAAGCTACAACGGTGAATCTTACTTCCCAGGCGGTGCAGTGG-AC
1 AGATTAAAGCTACAACGGTAAATCTTACTTCCCAGGCAGTGCAGTGGAAC
* * ** *
26462117 ATATTAAAGCCACAACGACAAATCTTGCTTCCC
1 AGATTAAAGCTACAACGGTAAATCTTACTTCCC
26462150 CTGCGGTTAA
Statistics
Matches: 100, Mismatches: 32, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
49 28 0.28
50 72 0.72
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCTACAACGGTAAATCTTACTTCCCAGGCAGTGCAGTGGAAC
Found at i:26462064 original size:100 final size:99
Alignment explanation
Indices: 26461938--26462150 Score: 327
Period size: 100 Copynumber: 2.1 Consensus size: 99
26461928 GAGAATAACG
** * **
26461938 AATCTTGCTTCCCCGACATTGTAGTTAAAAAGATTAAAGATACAACGGTAAATCTTACTTTGCAG
1 AATCTTGCTTCCCCGACATTACAGTTAAAAAAATTAAAGATACAACGGTAAATCTTACTTCCCAG
*
26462003 GCAGTGCAGTGGAACAGATTAAAGCCACAACGGCA
66 GCAGTGCAGTGG-ACAGATTAAAGCCACAACGACA
* *
26462038 AATCTTGCTTCCCCGACATTACAGTTAAAAAAATTAAAGCTACAACGGTGAATCTTACTTCCCAG
1 AATCTTGCTTCCCCGACATTACAGTTAAAAAAATTAAAGATACAACGGTAAATCTTACTTCCCAG
* *
26462103 GCGGTGCAGTGGACATATTAAAGCCACAACGACA
66 GCAGTGCAGTGGACAGATTAAAGCCACAACGACA
26462137 AATCTTGCTTCCCC
1 AATCTTGCTTCCCC
26462151 TGCGGTTAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 34 0.33
100 69 0.67
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (99 bp):
AATCTTGCTTCCCCGACATTACAGTTAAAAAAATTAAAGATACAACGGTAAATCTTACTTCCCAG
GCAGTGCAGTGGACAGATTAAAGCCACAACGACA
Found at i:26462459 original size:13 final size:14
Alignment explanation
Indices: 26462435--26462472 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
26462425 TCAGAAATAA
26462435 ATAAACAAAAAATT
1 ATAAACAAAAAATT
26462449 ATAAA-AAAAAA-T
1 ATAAACAAAAAATT
*
26462461 AAAAACAAAAAA
1 ATAAACAAAAAA
26462473 CAAATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 5 0.23
13 12 0.55
14 5 0.23
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.13
Consensus pattern (14 bp):
ATAAACAAAAAATT
Found at i:26465788 original size:23 final size:23
Alignment explanation
Indices: 26465758--26465803 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26465748 TTTTGCTCAG
26465758 TTTAGGTGCCGCTTCACTTTACC
1 TTTAGGTGCCGCTTCACTTTACC
26465781 TTTAGGTGCCGCTTCACTTTACC
1 TTTAGGTGCCGCTTCACTTTACC
26465804 CTCCGTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.30, G:0.17, T:0.39
Consensus pattern (23 bp):
TTTAGGTGCCGCTTCACTTTACC
Found at i:26465843 original size:19 final size:19
Alignment explanation
Indices: 26465816--26465854 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26465806 CCGTGTTTTA
26465816 CCCTCTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
*
26465835 CCCTTTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
26465854 C
1 C
26465855 TTCCTTCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.46, G:0.10, T:0.44
Consensus pattern (19 bp):
CCCTCTGCCTCTTCTGTTC
Found at i:26468709 original size:61 final size:61
Alignment explanation
Indices: 26468641--26468831 Score: 203
Period size: 61 Copynumber: 3.2 Consensus size: 61
26468631 TTTATAAAGT
26468641 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * ** * * * * * * * *
26468702 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAGT
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTGATTATTAAGAATTTTATTA-A
26468761 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
*
26468822 ATTATATATT
1 ATCATATATT
26468832 TTAATTAAAA
Statistics
Matches: 97, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
58 5 0.05
59 32 0.33
60 14 0.14
61 41 0.42
62 5 0.05
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:26468828 original size:59 final size:59
Alignment explanation
Indices: 26468645--26468828 Score: 166
Period size: 57 Copynumber: 3.1 Consensus size: 59
26468635 TAAAGTATCA
26468645 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * * *
26468704 CATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATT-TCAAATTATATTTTA-TAGTA
1 TATATTATGATTTTAGT-AAAT-TCATATAAGAAT-ATTGATTAT-TAA-GA-ATTTTATTA-AA
26468762 T
59 T
26468763 CATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
26468824 TATAT
1 TATAT
26468829 ATTTTAATTA
Statistics
Matches: 93, Mismatches: 16, Indels: 32
0.66 0.11 0.23
Matches are distributed among these distances:
56 6 0.06
57 17 0.18
58 10 0.11
59 16 0.17
61 11 0.12
62 10 0.11
63 17 0.18
64 6 0.06
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (59 bp):
TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
Found at i:26468840 original size:18 final size:17
Alignment explanation
Indices: 26468812--26468846 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26468802 ATTATTAAGA
*
26468812 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26468829 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26468847 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26468851 original size:120 final size:121
Alignment explanation
Indices: 26468629--26468860 Score: 439
Period size: 120 Copynumber: 1.9 Consensus size: 121
26468619 CTTAATTTTA
26468629 ATTTTATAAAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAAT
1 ATTTTAT-AAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAAT
26468694 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTAT
65 TTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTAT
26468751 ATTTTAT-AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATT
1 ATTTTATAAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATT
*
26468815 TTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
66 TTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT
26468861 GTTAAAATAT
Statistics
Matches: 109, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
120 102 0.94
122 7 0.06
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (121 bp):
ATTTTATAAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATT
TTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTAT
Found at i:26469066 original size:44 final size:45
Alignment explanation
Indices: 26469003--26469099 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 45
26468993 CTATTACACC
* *
26469003 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCAAT
* * *
26469047 TCCATTACATTCAACCAAACAATTGAATTGCTATTACGGCTCAAT
1 TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCAAT
26469092 TCCATTAC
1 TCCATTAC
26469100 CCCTCTATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.30
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCAAT
Found at i:26469109 original size:16 final size:16
Alignment explanation
Indices: 26469090--26469127 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
26469080 TTACGGCTCA
26469090 ATTCCATTACCCCTCT
1 ATTCCATTACCCCTCT
*
26469106 ATTCCATTACGCCTCT
1 ATTCCATTACCCCTCT
26469122 ATTCCA
1 ATTCCA
26469128 ATACAGCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.21, C:0.39, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTCCATTACCCCTCT
Found at i:26470766 original size:25 final size:25
Alignment explanation
Indices: 26470738--26470811 Score: 112
Period size: 25 Copynumber: 3.0 Consensus size: 25
26470728 TCCAGCTCTT
*
26470738 ATGAGCTTCCCGTTATTCAGCTTGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
*
26470763 ATGAGCTTCCCGTTATTCAACTCGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
26470788 ATGAGCTTTCTGTTATTCAGCTCG
1 ATGAGCTTCCCGTTATTCAGCTCG
26470812 GAGAAGCTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAGCTCGC
Found at i:26471866 original size:13 final size:13
Alignment explanation
Indices: 26471848--26471880 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26471838 AGCACACGGG
*
26471848 CATGTGGCTTGGC
1 CATGTGGCTAGGC
26471861 CATGT-GCTAGGC
1 CATGTGGCTAGGC
26471873 CATGTGGC
1 CATGTGGC
26471881 CCAAGTCAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.12, C:0.24, G:0.36, T:0.27
Consensus pattern (13 bp):
CATGTGGCTAGGC
Found at i:26477731 original size:36 final size:37
Alignment explanation
Indices: 26477667--26477740 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 37
26477657 GAACAAACAA
* *
26477667 TTTTAATTAAATTAAATTATTTATATATA-AAAATAT
1 TTTTAATTAAATTAAATTATTAAAATATATAAAATAT
* *
26477703 TTTTAATTAAATTTTAATTA-TAAAATATATGAAATAT
1 TTTTAATTAAA-TTAAATTATTAAAATATATAAAATAT
26477740 T
1 T
26477741 AGTGTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 18 0.56
37 14 0.44
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (37 bp):
TTTTAATTAAATTAAATTATTAAAATATATAAAATAT
Found at i:26486443 original size:9 final size:9
Alignment explanation
Indices: 26486429--26486456 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
26486419 TGATTTTTCG
26486429 AATTCGAAT
1 AATTCGAAT
26486438 AATTCGAAT
1 AATTCGAAT
26486447 AATTCGAAT
1 AATTCGAAT
26486456 A
1 A
26486457 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:26486533 original size:21 final size:21
Alignment explanation
Indices: 26486492--26486534 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
26486482 ACTCCAAACT
* *
26486492 CTCAAATCTTTTTACTTTTCC
1 CTCAAAACTTTTTACTCTTCC
26486513 CTCAAAAC-TTTTACTCCTTCC
1 CTCAAAACTTTTTACT-CTTCC
26486534 C
1 C
26486535 ACTTTTCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.35, G:0.00, T:0.44
Consensus pattern (21 bp):
CTCAAAACTTTTTACTCTTCC
Found at i:26488724 original size:22 final size:23
Alignment explanation
Indices: 26488679--26488724 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
26488669 TTTGATAATA
26488679 TGTTTTGATATAACAAATTAAAG
1 TGTTTTGATATAACAAATTAAAG
*
26488702 TGTTCTTGA-ATAA-AAGTTAAAG
1 TGTT-TTGATATAACAAATTAAAG
26488724 T
1 T
26488725 TGAACAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 9 0.43
23 8 0.38
24 4 0.19
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.39
Consensus pattern (23 bp):
TGTTTTGATATAACAAATTAAAG
Found at i:26491961 original size:33 final size:32
Alignment explanation
Indices: 26491924--26491986 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
26491914 TTATTAGCTT
*
26491924 TAAATTGAAAATGAATTTTATATAGGGGGAGCC
1 TAAATTGAAAATGAATTTTAT-TAAGGGGAGCC
*
26491957 TAAATTGAAGATGAATTTTATTAAGGGGAG
1 TAAATTGAAAATGAATTTTATTAAGGGGAG
26491987 AAATTTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 8 0.29
33 20 0.71
ACGTcount: A:0.40, C:0.03, G:0.25, T:0.32
Consensus pattern (32 bp):
TAAATTGAAAATGAATTTTATTAAGGGGAGCC
Found at i:26492112 original size:22 final size:24
Alignment explanation
Indices: 26492069--26492112 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
26492059 TAATAATAAG
26492069 TTTTGATATAACAAATTAAAGTGT
1 TTTTGATATAACAAATTAAAGTGT
*
26492093 TTTTGA-ATAA-AAGTTAAAGT
1 TTTTGATATAACAAATTAAAGT
26492113 TGAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTGT
Found at i:26495548 original size:21 final size:20
Alignment explanation
Indices: 26495524--26495574 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
26495514 ACTGAGTTAA
*
26495524 AAGAGTTGAAAGCAGTTTTTC
1 AAGAGTTGAAA-CAGTTTTGC
*
26495545 AAGAGTTGGAAATAGTTTTGC
1 AAGAGTT-GAAACAGTTTTGC
26495566 AAGAGTTGA
1 AAGAGTTGA
26495575 CTGATAGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 21 0.78
22 4 0.15
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (20 bp):
AAGAGTTGAAACAGTTTTGC
Found at i:26512424 original size:25 final size:26
Alignment explanation
Indices: 26512395--26512452 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
26512385 GCTATAAACG
* *
26512395 GTAAGCTCT-TCCGAGCTGAATAACA
1 GTAAGCTCTATACAAGCTGAATAACA
* *
26512420 GTAAGCT-TATACAAGCTGAATATCG
1 GTAAGCTCTATACAAGCTGAATAACA
26512445 GTAAGCTC
1 GTAAGCTC
26512453 ATAAGAGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
GTAAGCTCTATACAAGCTGAATAACA
Found at i:26513385 original size:22 final size:23
Alignment explanation
Indices: 26513359--26513401 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26513349 TATCACCTTT
26513359 TTACCT-A-TTTACAAAATTACCC
1 TTACCTAACTTTA-AAAATTACCC
26513381 TTACCTAACTTTAAAAATTAC
1 TTACCTAACTTTAAAAATTAC
26513402 TCAATTTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (23 bp):
TTACCTAACTTTAAAAATTACCC
Found at i:26513959 original size:8 final size:9
Alignment explanation
Indices: 26513939--26513996 Score: 50
Period size: 9 Copynumber: 6.2 Consensus size: 9
26513929 AATTATTATT
26513939 ATATATAAC
1 ATATATAAC
26513948 ATATAT-AC
1 ATATATAAC
26513956 ATATATTAA-
1 ATATA-TAAC
26513965 ACTATCATAAC
1 A-TAT-ATAAC
26513976 ATATATATA-
1 ATATATA-AC
26513985 ATATATATAC
1 ATATATA-AC
26513995 AT
1 AT
26513997 TTACTCCACT
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
8 7 0.17
9 20 0.48
10 13 0.31
11 2 0.05
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (9 bp):
ATATATAAC
Found at i:26517403 original size:20 final size:20
Alignment explanation
Indices: 26517380--26517420 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26517370 AATTAAACCG
26517380 AGCTCAAATGAGCTAAATTA
1 AGCTCAAATGAGCTAAATTA
** *
26517400 AGCTCATGTGAGCTGAATTA
1 AGCTCAAATGAGCTAAATTA
26517420 A
1 A
26517421 AATTAGGTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (20 bp):
AGCTCAAATGAGCTAAATTA
Found at i:26518699 original size:13 final size:12
Alignment explanation
Indices: 26518681--26518732 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 12
26518671 TGTGAGCAAG
26518681 AAAAGAACATTGA
1 AAAAGAA-ATTGA
26518694 AAAAGAAATTG-
1 AAAAGAAATTGA
26518705 -AAAGAAATTG-
1 AAAAGAAATTGA
*
26518715 -AAGGAAA-TGA
1 AAAAGAAATTGA
26518725 AAAAGAAA
1 AAAAGAAA
26518733 AAAAAAGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 16 0.46
11 6 0.17
12 4 0.11
13 7 0.20
ACGTcount: A:0.65, C:0.02, G:0.19, T:0.13
Consensus pattern (12 bp):
AAAAGAAATTGA
Found at i:26525509 original size:114 final size:114
Alignment explanation
Indices: 26525356--26526142 Score: 1340
Period size: 114 Copynumber: 6.9 Consensus size: 114
26525346 ATAGCGGCAG
* * *
26525356 TAGCAGCGTTTGTTTGTAAGCGCCGCAAACAATATTAAACAAAACGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
26525421 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
*
26525470 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGTAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
*
26525535 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGTATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
* * *
26525584 TAGCGGCATTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAGGATTGAGGC
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
* * *
26525649 ATAGTAGAATTGGTGGCGTTTCTGTCAAAACGCCGCTGAAGTGTATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
* *
26525698 TAGCGGCATTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAGGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
*
26525763 ATAGTAGAATTGGTGGCGTTTCTGTCAAAACGCCGCTAAAGTGGATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
* * *
26525812 TAGCAGCGTTTGCTTGTAAGCGCCGTAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
* * *
26525877 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATAAA
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
26525926 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
* * *
26525991 ATAGTTGAATTTGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
*
26526040 TAGCGGTGTTTGTTTGTAAGCGCCGCAAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGG
1 TAGCGGCGTTTGTTTGTAAGCGCCGC-AAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGG
*
26526105 TATAGTAGAATTGGTGGCGTTTCTATAAAAACGCCGCT
65 TATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCT
26526143 GAAGCACATT
Statistics
Matches: 638, Mismatches: 34, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
114 565 0.89
115 73 0.11
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (114 bp):
TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTAAAGTGGATCAT
Found at i:26527988 original size:17 final size:19
Alignment explanation
Indices: 26527968--26528008 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
26527958 CTGTCATCTC
26527968 CCCCAAATCCCTAA-A-TT
1 CCCCAAATCCCTAACAGTT
*
26527985 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAACAGTT
26528004 CCCCA
1 CCCCA
26528009 TACCCGACGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 13 0.65
18 1 0.05
19 6 0.30
ACGTcount: A:0.29, C:0.46, G:0.02, T:0.22
Consensus pattern (19 bp):
CCCCAAATCCCTAACAGTT
Found at i:26529829 original size:27 final size:27
Alignment explanation
Indices: 26529796--26530020 Score: 218
Period size: 27 Copynumber: 7.9 Consensus size: 27
26529786 TACAAGATTA
*
26529796 TACATAAATTAAATTACTTACATAACT
1 TACATAAATTAAATAACTTACATAACT
* *
26529823 TGA-ATAAATTAAATAAGTTACATAACC
1 T-ACATAAATTAAATAACTTACATAACT
26529850 TACATAAATTAAATAACTTACATAACT
1 TACATAAATTAAATAACTTACATAACT
* * *
26529877 TACATAAATTAAGTAACCTACATAACA
1 TACATAAATTAAATAACTTACATAACT
* *
26529904 TACATAAACTTGCATAAATTAAATAACTTACATAACC
1 TACATAAA--T---TAAA-T--A-AC-TTACATAACT
*
26529941 TACATAAATTAAATAACTTCCATAACT
1 TACATAAATTAAATAACTTACATAACT
* *
26529968 TACATAAATTAAGTAACTTACATAACA
1 TACATAAATTAAATAACTTACATAACT
**
26529995 TACATAAACTTGCATAACTTACATAA
1 TACATAAA-TTAAATAACTTACATAA
26530021 AAATATATCA
Statistics
Matches: 164, Mismatches: 21, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
26 1 0.01
27 117 0.71
28 16 0.10
29 2 0.01
31 1 0.01
32 7 0.04
33 1 0.01
35 2 0.01
36 1 0.01
37 16 0.10
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.31
Consensus pattern (27 bp):
TACATAAATTAAATAACTTACATAACT
Found at i:26529837 original size:9 final size:9
Alignment explanation
Indices: 26529796--26530020 Score: 186
Period size: 9 Copynumber: 24.8 Consensus size: 9
26529786 TACAAGATTA
*
26529796 TACATAAAT
1 TACATAACT
* *
26529805 TAAATTACT
1 TACATAACT
26529814 TACATAACT
1 TACATAACT
*
26529823 TGA-ATAAAT
1 T-ACATAACT
* *
26529832 TAAATAAGT
1 TACATAACT
*
26529841 TACATAACC
1 TACATAACT
*
26529850 TACATAAAT
1 TACATAACT
*
26529859 TAAATAACT
1 TACATAACT
26529868 TACATAACT
1 TACATAACT
*
26529877 TACATAAAT
1 TACATAACT
*
26529886 TA-AGTAACC
1 TACA-TAACT
*
26529895 TACATAACA
1 TACATAACT
26529904 TACATAAACT
1 TACAT-AACT
* *
26529914 TGCATAAAT
1 TACATAACT
*
26529923 TAAATAACT
1 TACATAACT
*
26529932 TACATAACC
1 TACATAACT
*
26529941 TACATAAAT
1 TACATAACT
*
26529950 TAAATAACT
1 TACATAACT
*
26529959 TCCATAACT
1 TACATAACT
*
26529968 TACATAAAT
1 TACATAACT
26529977 TA-AGTAACT
1 TACA-TAACT
*
26529986 TACATAACA
1 TACATAACT
26529995 TACATAAACT
1 TACAT-AACT
*
26530005 TGCATAACT
1 TACATAACT
26530014 TACATAA
1 TACATAA
26530021 AAATATATCA
Statistics
Matches: 168, Mismatches: 40, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
8 3 0.02
9 148 0.88
10 17 0.10
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.31
Consensus pattern (9 bp):
TACATAACT
Found at i:26529921 original size:91 final size:91
Alignment explanation
Indices: 26529814--26530020 Score: 353
Period size: 91 Copynumber: 2.3 Consensus size: 91
26529804 TTAAATTACT
* *
26529814 TACAT-AACTTGAATAAATTAAATAAGTTACATAACCTACATAAATTAAATAACTTACATAACTT
1 TACATAAACTTGCATAAATTAAATAACTTACATAACCTACATAAATTAAATAACTTACATAACTT
26529878 ACATAAATTAAGTAACCTACATAACA
66 ACATAAATTAAGTAACCTACATAACA
*
26529904 TACATAAACTTGCATAAATTAAATAACTTACATAACCTACATAAATTAAATAACTTCCATAACTT
1 TACATAAACTTGCATAAATTAAATAACTTACATAACCTACATAAATTAAATAACTTACATAACTT
*
26529969 ACATAAATTAAGTAACTTACATAACA
66 ACATAAATTAAGTAACCTACATAACA
* *
26529995 TACATAAACTTGCATAACTTACATAA
1 TACATAAACTTGCATAAATTAAATAA
26530021 AAATATATCA
Statistics
Matches: 110, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
90 5 0.05
91 105 0.95
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (91 bp):
TACATAAACTTGCATAAATTAAATAACTTACATAACCTACATAAATTAAATAACTTACATAACTT
ACATAAATTAAGTAACCTACATAACA
Found at i:26529922 original size:37 final size:37
Alignment explanation
Indices: 26529862--26529974 Score: 122
Period size: 37 Copynumber: 3.1 Consensus size: 37
26529852 CATAAATTAA
* *
26529862 ATAACTTACAT-AACTTACATAAATTAAGTAACCTAC
1 ATAACATACATAAACTTACATAAATTAAATAACCTAC
* *
26529898 ATAACATACATAAACTTGCATAAATTAAATAACTTAC
1 ATAACATACATAAACTTACATAAATTAAATAACCTAC
* * * ** *
26529935 ATAACCTACATAAA-TTAAATAACTTCCATAACTTAC
1 ATAACATACATAAACTTACATAAATTAAATAACCTAC
26529971 ATAA
1 ATAA
26529975 ATTAAGTAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
36 31 0.47
37 35 0.53
ACGTcount: A:0.50, C:0.19, G:0.02, T:0.30
Consensus pattern (37 bp):
ATAACATACATAAACTTACATAAATTAAATAACCTAC
Found at i:26535841 original size:42 final size:42
Alignment explanation
Indices: 26535778--26535982 Score: 329
Period size: 42 Copynumber: 4.9 Consensus size: 42
26535768 GTATAAAAAT
* *
26535778 GCCGCTAAAAAACATGATCTTTAGCGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
*
26535820 GCCGCTAAAGAATATGGTCTTTAGCGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
* ** *
26535862 GTCGCTAAAGATTATGGTCTTTAGCGGCATTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGC-GTTTTTTTCTAAGC
*
26535905 GCCGCTAAAGAACATGGTCTTTAGAGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
26535947 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
26535983 TTGTAAACGC
Statistics
Matches: 150, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
42 113 0.75
43 37 0.25
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (42 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
Found at i:26535916 original size:85 final size:84
Alignment explanation
Indices: 26535778--26535983 Score: 322
Period size: 85 Copynumber: 2.4 Consensus size: 84
26535768 GTATAAAAAT
* * * *
26535778 GCCGCTAAAAAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAATATGGTCTTTA
1 GCCGCTAAAGAACATGGTCTTTAGCGGCTTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTA
*
26535843 GCGGCGTTTTTTTCTAAGC
66 GAGGCGTTTTTTTCTAAGC
* **
26535862 GTCGCTAAAGATTATGGTCTTTAGCGGCATTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
1 GCCGCTAAAGAACATGGTCTTTAGCGGC-TTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
26535927 AGAGGCGTTTTTTTCTAAGC
65 AGAGGCGTTTTTTTCTAAGC
26535947 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTT
1 GCCGCTAAAGAACATGGTCTTTAGCGGC-TTTTTTTT
26535984 TGTAAACGCT
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 23 0.21
85 86 0.79
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (84 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCTTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTA
GAGGCGTTTTTTTCTAAGC
Found at i:26536222 original size:14 final size:14
Alignment explanation
Indices: 26536199--26536233 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
26536189 TTTGAATTTA
26536199 TTTTTAAAAAATATT
1 TTTTTAAAAAA-ATT
26536214 TTTTTAAAAAAATT
1 TTTTTAAAAAAATT
*
26536228 TATTTA
1 TTTTTA
26536234 TAGCATGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTTTTAAAAAAATT
Found at i:26541844 original size:41 final size:41
Alignment explanation
Indices: 26541798--26541935 Score: 249
Period size: 41 Copynumber: 3.4 Consensus size: 41
26541788 GATTCACCAG
* *
26541798 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGA
1 CACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGA
*
26541839 CACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGG
1 CACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGA
26541880 CACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGA
1 CACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGA
26541921 CACTTAGCCTGCTAG
1 CACTTAGCCTGCTAG
26541936 ACGTATAGTC
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 93 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (41 bp):
CACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCACCGA
Found at i:26549572 original size:41 final size:41
Alignment explanation
Indices: 26549514--26549704 Score: 337
Period size: 41 Copynumber: 4.6 Consensus size: 41
26549504 CTTAATTTAA
* *
26549514 CAGATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
*
26549556 CAGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
*
26549597 CAGATCACCGGCACTTATCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
26549638 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
26549679 CAGATCACCGGCACTTAGCCTGCTAG
1 CAGATCACCGGCACTTAGCCTGCTAG
26549705 ACGTATAGTC
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
41 139 0.97
42 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
Found at i:26551637 original size:90 final size:90
Alignment explanation
Indices: 26551484--26551667 Score: 332
Period size: 90 Copynumber: 2.0 Consensus size: 90
26551474 TTACGCGATT
*
26551484 TAATCCTTTTATTTAATCAGACACTCAAACGACGAAATTAAAACATGAAAATTTCATAAAATTAA
1 TAATCCTTTTATTTAATCAGACACTCAAACGACGAAATTAAAACACGAAAATTTCATAAAATTAA
26551549 ATTCACACATAATAAACACACAAAA
66 ATTCACACATAATAAACACACAAAA
* *
26551574 TAATCCTTTTATTTAATCGGACACTCAAACGACGAAATTAAAACACGAAAATTTCATACAATTAA
1 TAATCCTTTTATTTAATCAGACACTCAAACGACGAAATTAAAACACGAAAATTTCATAAAATTAA
*
26551639 ATTCACACATAGTAAACACACAAAA
66 ATTCACACATAATAAACACACAAAA
26551664 TAAT
1 TAAT
26551668 ATTAAAATAT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.27
Consensus pattern (90 bp):
TAATCCTTTTATTTAATCAGACACTCAAACGACGAAATTAAAACACGAAAATTTCATAAAATTAA
ATTCACACATAATAAACACACAAAA
Found at i:26553482 original size:14 final size:14
Alignment explanation
Indices: 26553463--26553492 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26553453 TCCCATGTGT
*
26553463 TTGAAAATGAATTC
1 TTGAAAAAGAATTC
26553477 TTGAAAAAGAATTC
1 TTGAAAAAGAATTC
26553491 TT
1 TT
26553493 TTGGTCAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (14 bp):
TTGAAAAAGAATTC
Found at i:26554106 original size:42 final size:44
Alignment explanation
Indices: 26554045--26554130 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
26554035 TGTATTTTTT
*
26554045 TATATTGTTTCAAGCTTTTTTT-TTTA-ATTTTTAATTAATAAA
1 TATATTGTTTCAAGCTTTTTTTATTCATATTTTTAATTAATAAA
*
26554087 TATATTGTTTTCAA-TTTTTTTTAATTCATATTTTTAATTAATAA
1 TATATTG-TTTCAAGCTTTTTTT-ATTCATATTTTTAATTAATAA
26554131 CTCTTTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
42 14 0.37
43 6 0.16
44 3 0.08
45 15 0.39
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.60
Consensus pattern (44 bp):
TATATTGTTTCAAGCTTTTTTTATTCATATTTTTAATTAATAAA
Found at i:26554810 original size:26 final size:26
Alignment explanation
Indices: 26554779--26554829 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26554769 TTTGTATGTG
26554779 TATTTGAAATATTTCACATATAAAAA
1 TATTTGAAATATTTCACATATAAAAA
*
26554805 TATTTGAAATATTTTACATATAAAA
1 TATTTGAAATATTTCACATATAAAA
26554830 TAATAATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (26 bp):
TATTTGAAATATTTCACATATAAAAA
Found at i:26556321 original size:4 final size:4
Alignment explanation
Indices: 26556312--26556345 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
26556302 CCTTCGCCTC
26556312 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC
26556346 GTTGTTGCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:26559203 original size:34 final size:38
Alignment explanation
Indices: 26559133--26559203 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 38
26559123 TACAGATGTC
* *
26559133 TAGGATTATAAGTTATCTTCAAGGTTTCAATTTAGGGA
1 TAGGATTATAAGTTATCTTCAAGGTTTAAATCTAGGGA
26559171 TAGGATTATAAG-T-T-TT-AAGGTTTAAATCTAGGG
1 TAGGATTATAAGTTATCTTCAAGGTTTAAATCTAGGG
26559204 GTAGTTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 15 0.48
35 2 0.06
36 1 0.03
37 1 0.03
38 12 0.39
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (38 bp):
TAGGATTATAAGTTATCTTCAAGGTTTAAATCTAGGGA
Found at i:26571718 original size:135 final size:136
Alignment explanation
Indices: 26571459--26571738 Score: 456
Period size: 135 Copynumber: 2.1 Consensus size: 136
26571449 GAGAACATAG
* *
26571459 ATATAATTAATATATGAATTTGATTAATACAAAATATTAATTGTATATATTTTATCGAATTTATT
1 ATATAATTAATATATGAATTTGATTAATACAAAATA-TAATTGTATATATTTTACCAAATTTATT
*
26571524 AATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATCAATATTCTTT
65 AATATAAACAAGTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATCAATATTCTTT
26571589 TGGAAAGA
130 TGGAAA-A
*
26571597 ATATAATTAATATATGAATTTGATTCATACAAAATA-AATTGTATATATTTTACCAAATTTATTA
1 ATATAATTAATATATGAATTTGATTAATACAAAATATAATTGTATATATTTTACCAAATTTATTA
* * *
26571661 ATATAAA-TAGTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
66 ATATAAACAAGTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATCAATATTCTTTT
26571725 GGAAAA
131 GGAAAA
*
26571731 AAATAATT
1 ATATAATT
26571739 TATTTTCTAA
Statistics
Matches: 134, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
134 8 0.06
135 58 0.43
136 33 0.25
138 35 0.26
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.40
Consensus pattern (136 bp):
ATATAATTAATATATGAATTTGATTAATACAAAATATAATTGTATATATTTTACCAAATTTATTA
ATATAAACAAGTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATCAATATTCTTTT
GGAAAA
Found at i:26572212 original size:288 final size:286
Alignment explanation
Indices: 26571689--26572258 Score: 996
Period size: 288 Copynumber: 2.0 Consensus size: 286
26571679 TTAATTTCGG
26571689 TCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAAAAATAATTTATTTTCTAACTTTC
1 TCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAAAAATAATTTATTTTCTAACTTTC
26571754 CATTTGCCTTCTCCATTAATAAAGGAATAATCCCGGTTTTCCTTTTTAATATGTGATATCAAAGA
66 CATTTGCCTTCTCCATTAATAAAGGAATAATCCCGGTTTTCCTTTTTAATATGTGATATCAAAGA
* *
26571819 GGATAAAAGGATGATAGTCCCTTAGTGTGTTAATGTTACCAACTTAATAATTTAAAAGGTCTAGC
131 GGATAAAAGGATGATAGTCCCTTAGTGTGTTAATGCTACCAACTTAATAATTTAAAAGGTCTAAC
* * *
26571884 AACTGTTTTTAATTCTCTTTGAAAAGTTCAAAAGAAAGTGGTTGTTCGTTTTTAACTGGGTGGAC
196 AACTGTTTTTAATTCTCTTTAAAAAGTTCAAAAGAAAGTGGTTATTCGTTTTTAACGGGGTGGAC
*
26571949 TATGTAAAGGCCGAGACATTTTATTT
261 TACGTAAAGGCCGAGACATTTTATTT
* *
26571975 TCAAAATTATAAAAGGCATGGAAATTAATATTCTTTTGGAAAGAATATAATTTATTTTCTAACTT
1 TCAAAA-TATAAAAGACATGGAAATTAATATTCTTTTGGAAA-AAAATAATTTATTTTCTAACTT
*
26572040 TCCATTTGCCTTCTCCATTAATAAAGGAATAGTCCCGGTTTTCCTTTTTAATATGTGATATCAAA
64 TCCATTTGCCTTCTCCATTAATAAAGGAATAATCCCGGTTTTCCTTTTTAATATGTGATATCAAA
26572105 GAGGATAAAAGGATGATAGTCCCTTAGTGTGTTAATGCTACCAACTTAATAATTTAAAAGGTCTA
129 GAGGATAAAAGGATGATAGTCCCTTAGTGTGTTAATGCTACCAACTTAATAATTTAAAAGGTCTA
* * *
26572170 ACAATTGTTTTTAATTCTCTTTAAAAAGTTCAAAATAAAGTGGTTATTTGTTTTTAACGGGGTGG
194 ACAACTGTTTTTAATTCTCTTTAAAAAGTTCAAAAGAAAGTGGTTATTCGTTTTTAACGGGGTGG
* *
26572235 ACTACGTAGAGGCTGAGACATTTT
259 ACTACGTAAAGGCCGAGACATTTT
26572259 CGTTGTGGCT
Statistics
Matches: 268, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
286 6 0.02
287 34 0.13
288 228 0.85
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (286 bp):
TCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAAAAATAATTTATTTTCTAACTTTC
CATTTGCCTTCTCCATTAATAAAGGAATAATCCCGGTTTTCCTTTTTAATATGTGATATCAAAGA
GGATAAAAGGATGATAGTCCCTTAGTGTGTTAATGCTACCAACTTAATAATTTAAAAGGTCTAAC
AACTGTTTTTAATTCTCTTTAAAAAGTTCAAAAGAAAGTGGTTATTCGTTTTTAACGGGGTGGAC
TACGTAAAGGCCGAGACATTTTATTT
Found at i:26575055 original size:75 final size:75
Alignment explanation
Indices: 26574922--26575066 Score: 209
Period size: 75 Copynumber: 1.9 Consensus size: 75
26574912 ATGGAAATCA
* ** * * *
26574922 ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCCTTTGCATTCTTTATTAATAAGG
1 ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATCAGCATTATCTATTAATAAGA
26574987 GAATAATCCT
66 GAATAATCCT
* * *
26574997 ATATTCTTTTGGAAAGAATATAGTTGATTTTTCTAACTTTCCATCAGCCTTATCTATTAATAAGA
1 ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATCAGCATTATCTATTAATAAGA
26575062 GAATA
66 GAATA
26575067 TTTTTGGTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 61 1.00
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.43
Consensus pattern (75 bp):
ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATCAGCATTATCTATTAATAAGA
GAATAATCCT
Found at i:26576313 original size:101 final size:102
Alignment explanation
Indices: 26576192--26576379 Score: 299
Period size: 101 Copynumber: 1.9 Consensus size: 102
26576182 GTGAAAGTGA
* * *
26576192 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGA-A-TGATAGGTCGCATGTGT
1 TGGTCAAGTGTGTAGTACTATGTGCAGGCTACTACATGCACCAGATAGTGAT-GGTCACATGTGT
*
26576255 AGTACTATGTGGAGGCTACTATGCGTACTGGATAGCTT
65 AGTACTATGTGCAGGCTACTATGCGTACTGGATAGCTT
* *
26576293 TGGTCAAGTGTGTAGTACTATGTGCAGGCTACTACGTGCATCAGATAGTGATGGTCACATGTGTA
1 TGGTCAAGTGTGTAGTACTATGTGCAGGCTACTACATGCACCAGATAGTGATGGTCACATGTGTA
26576358 GTACTATGTGCAGGCTACTATG
66 GTACTATGTGCAGGCTACTATG
26576380 TGAACCGGTA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
101 41 0.52
102 34 0.43
103 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (102 bp):
TGGTCAAGTGTGTAGTACTATGTGCAGGCTACTACATGCACCAGATAGTGATGGTCACATGTGTA
GTACTATGTGCAGGCTACTATGCGTACTGGATAGCTT
Found at i:26576315 original size:51 final size:53
Alignment explanation
Indices: 26576187--26576379 Score: 208
Period size: 51 Copynumber: 3.8 Consensus size: 53
26576177 TTAAAGTGAA
* ***
26576187 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTAC--CAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACATCAGAT
* * *
26576237 A-TGATAGGTCGCATGTGTAGTACTATGTGGAGGCTACTATGCGTAC-T-GGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACATCAGAT
* *
26576288 AGCT-TTGGTCA-AGTGTGTAGTACTATGTGCAGGCTACTA--CGTGCATCAGAT
1 AG-TGATGGTCACA-TGTGTAGTACTATGTGCAGGCTACTATGCGTACATCAGAT
26576339 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
26576380 TGAACCGGTA
Statistics
Matches: 118, Mismatches: 13, Indels: 21
0.78 0.09 0.14
Matches are distributed among these distances:
49 8 0.07
50 40 0.34
51 67 0.57
52 2 0.02
53 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (53 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACATCAGAT
Found at i:26576626 original size:16 final size:16
Alignment explanation
Indices: 26576605--26576636 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26576595 TGATTGAAAG
*
26576605 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
26576621 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
26576637 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:26583137 original size:16 final size:16
Alignment explanation
Indices: 26583116--26583167 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
26583106 TTTGGTTCGC
26583116 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26583132 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
26583148 AGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26583164 TGTA
1 TGTA
26583168 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:26583424 original size:18 final size:17
Alignment explanation
Indices: 26583403--26583437 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26583393 TTATTATTAA
*
26583403 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26583421 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26583438 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26583503 original size:157 final size:157
Alignment explanation
Indices: 26583294--26583606 Score: 581
Period size: 157 Copynumber: 2.0 Consensus size: 157
26583284 ATACCCTTAG
*
26583294 CATAAATTTGTTTTGGTAAATGATTATTGTTTTTGTTATTTAAATTTTAATAAGATTATTAATAT
1 CATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATAT
* *
26583359 CAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATA
66 CAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
26583424 TAATTTAATAAAATTCTTAATAATTAC
131 TAATTTAATAAAATTCTTAATAATTAC
*
26583451 CATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATAT
1 CATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATAT
26583516 CAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
66 CAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
*
26583581 TAATTTAATAAAGTTCTTAATAATTA
131 TAATTTAATAAAATTCTTAATAATTA
26583607 ATATTCTTAT
Statistics
Matches: 151, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 151 1.00
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (157 bp):
CATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATAT
CAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
TAATTTAATAAAATTCTTAATAATTAC
Found at i:26583577 original size:16 final size:16
Alignment explanation
Indices: 26583540--26583581 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26583530 TTAATCATAT
*
26583540 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
26583556 TT-AAATATATTATAA
1 TTAAAATATATTATAA
26583571 TTAAAATATAT
1 TTAAAATATAT
26583582 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:26583588 original size:14 final size:15
Alignment explanation
Indices: 26583549--26583590 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26583539 TTTAAACATA
*
26583549 ATTATTATTAAATAT
1 ATTATAATTAAATAT
26583564 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
26583578 A-TATAATTTAATA
1 ATTATAATTAAATA
26583591 AAGTTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:26583603 original size:82 final size:81
Alignment explanation
Indices: 26583360--26583609 Score: 204
Period size: 76 Copynumber: 3.1 Consensus size: 81
26583350 TATTAATATC
* *
26583360 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
26583425 AATTTAATAAAATTCTT
66 AATTTAAT-AAATTCTT
* * * * * *
26583442 AATAATTACCATAAATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT--TTAAAT
1 AATAA-TA-AAT-AATTTAATCATATT--TAAACATAATTATTATTAAATATATTATAATTAAAA
* * *
26583496 TTTAATAAGATT-ATTAATATC--
61 TAT-ATAA-TTTAATAAAT-TCTT
26583517 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
26583582 AATTTAATAAAGTTCTT
66 AATTTAATAAA-TTCTT
*
26583599 AATAATTAATA
1 AATAATAAATA
26583610 TTCTTATATG
Statistics
Matches: 124, Mismatches: 21, Indels: 46
0.65 0.11 0.24
Matches are distributed among these distances:
72 5 0.04
73 3 0.02
74 3 0.02
75 8 0.06
76 22 0.18
77 8 0.06
78 8 0.06
79 9 0.07
80 10 0.08
81 20 0.16
82 18 0.15
83 3 0.02
84 3 0.02
85 4 0.03
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATAT
AATTTAATAAATTCTT
Found at i:26583690 original size:157 final size:158
Alignment explanation
Indices: 26583341--26583691 Score: 362
Period size: 157 Copynumber: 2.2 Consensus size: 158
26583331 ATTTAAATTT
*
26583341 TAATAAGATTATTAATATCAATAAT-AA-ATATTTTAATCATATTTAAACATAATTATTATTAAA
1 TAATAAGA-TAATAATATCAATAATAAATATATTTTAATCATATTTAAACATAATTATTATTAAA
* * * * **
26583404 TATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCATAAATTTGTTTTGGTA
65 TATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACATAAATATGATTTACTA
* * * * * ***
26583469 AATTATTATTGTTATTGTTATTTAAATTT
130 AATCATTAATGATATTGATATATAAAAGA
*
26583498 TAATAAGATTATTAATATCAATAATAAATA-A-TTTAATCATATTTAAACATAATTATTATTAAA
1 TAATAAGA-TAATAATATCAATAATAAATATATTTTAATCATATTTAAACATAATTATTATTAAA
* * **
26583561 TATATTATAATTAAAATATATAATTTAATAAAGTTCTTAATAATTAATATTCTTATATGAATTTA
65 TATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA-T-AAATATG-ATTTA
26583626 CTCAAATCA-TAAT-ATA-TGATACTATAAAAGA
127 CT-AAATCATTAATGATATTGATA-TATAAAAGA
** *
26583657 TAATTTGA-AATAAT-T-AATATTAAATATATTTTAAT
1 TAATAAGATAATAATATCAATAATAAATATATTTTAAT
26583692 TAAAATATAT
Statistics
Matches: 163, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
155 10 0.06
156 2 0.01
157 113 0.69
158 8 0.05
159 18 0.11
160 7 0.04
161 5 0.03
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (158 bp):
TAATAAGATAATAATATCAATAATAAATATATTTTAATCATATTTAAACATAATTATTATTAAAT
ATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACATAAATATGATTTACTAA
ATCATTAATGATATTGATATATAAAAGA
Found at i:26586733 original size:51 final size:51
Alignment explanation
Indices: 26586652--26586765 Score: 167
Period size: 51 Copynumber: 2.3 Consensus size: 51
26586642 TATACCATCT
* * * **
26586652 AGAAACACACCTAGGCATTGAGTGCCAAGCCTGTAGGCTACACATCCCTCC
1 AGAAACACACCTGGGCATTGAATGCAAAGCCCATAGGCTACACATCCCTCC
*
26586703 AGAAACACACCTGGGCATTGAATGCAAAGCCCATAGGCTACACATCTCTCC
1 AGAAACACACCTGGGCATTGAATGCAAAGCCCATAGGCTACACATCCCTCC
26586754 A-AAACACACCTG
1 AGAAACACACCTG
26586766 AATCTCCATA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 11 0.19
51 46 0.81
ACGTcount: A:0.33, C:0.32, G:0.18, T:0.17
Consensus pattern (51 bp):
AGAAACACACCTGGGCATTGAATGCAAAGCCCATAGGCTACACATCCCTCC
Found at i:26594127 original size:16 final size:16
Alignment explanation
Indices: 26594102--26594137 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
26594092 AGCAAGAAAA
26594102 ACAA-AACCCATGTTC
1 ACAATAACCCATGTTC
26594117 ACAATAACCCATGTTC
1 ACAATAACCCATGTTC
26594133 ACAAT
1 ACAAT
26594138 TTGACTATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.42, C:0.31, G:0.06, T:0.22
Consensus pattern (16 bp):
ACAATAACCCATGTTC
Found at i:26620315 original size:13 final size:13
Alignment explanation
Indices: 26620284--26620423 Score: 63
Period size: 13 Copynumber: 10.5 Consensus size: 13
26620274 TATCTTTTTC
*
26620284 CATATAACCAGTT
1 CATATAACCATTT
* *
26620297 CGTATAACTATTT
1 CATATAACCATTT
*
26620310 CATAT-ATCATTTTT
1 CATATAACCA--TTT
26620324 CATATAACCGATTT
1 CATATAACC-ATTT
*
26620338 -GTATAACCATTT
1 CATATAACCATTT
* ***
26620350 TATATATTTATTT
1 CATATAACCATTT
*
26620363 CTATATAACCAATT
1 C-ATATAACCATTT
*
26620377 CATAT-ATCATTTTTT
1 CATATAACCA---TTT
* *
26620392 TAGATAACCGATTT
1 CATATAACC-ATTT
26620406 -ATATAACCATTT
1 CATATAACCATTT
26620418 CATATA
1 CATATA
26620424 TTTATTTTCA
Statistics
Matches: 92, Mismatches: 23, Indels: 24
0.66 0.17 0.17
Matches are distributed among these distances:
12 13 0.14
13 45 0.49
14 23 0.25
15 7 0.08
16 3 0.03
17 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.45
Consensus pattern (13 bp):
CATATAACCATTT
Found at i:26620328 original size:40 final size:39
Alignment explanation
Indices: 26620264--26620382 Score: 134
Period size: 40 Copynumber: 3.0 Consensus size: 39
26620254 ATCCAGTGTT
26620264 CCATTTTATATATCTTTTTCCATATAACCAGTTCGTATAA
1 CCATTTTATATATCTTTTT-CATATAACCAGTTCGTATAA
* * *
26620304 CTATTTCATATATCATTTTTCATATAACC-GATTTGTATAA
1 CCATTTTATATATC-TTTTTCATATAACCAG-TTCGTATAA
* *
26620344 CCATTTTATATAT-TTATTTCTATATAACCAATTCATATA
1 CCATTTTATATATCTT-TTTC-ATATAACCAGTTCGTATA
26620383 TCATTTTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 10
0.79 0.10 0.12
Matches are distributed among these distances:
38 2 0.03
39 5 0.08
40 54 0.82
41 5 0.08
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (39 bp):
CCATTTTATATATCTTTTTCATATAACCAGTTCGTATAA
Found at i:26620400 original size:28 final size:29
Alignment explanation
Indices: 26620350--26620410 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
26620340 ATAACCATTT
*
26620350 TATATATTTATTTCTATATAACCAATTCA
1 TATATATTTATTTCTAGATAACCAATTCA
* *
26620379 TATATCATTT-TTT-TAGATAACCGATTTA
1 TATAT-ATTTATTTCTAGATAACCAATTCA
26620407 TATA
1 TATA
26620411 ACCATTTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 16 0.57
29 8 0.29
30 4 0.14
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.49
Consensus pattern (29 bp):
TATATATTTATTTCTAGATAACCAATTCA
Found at i:26620412 original size:68 final size:67
Alignment explanation
Indices: 26620299--26620430 Score: 201
Period size: 68 Copynumber: 2.0 Consensus size: 67
26620289 AACCAGTTCG
* * * * *
26620299 TATAACTATTTCATATATCATTTTTCATATAACCGATTTGTATAACCATTTTATATATTTATTTC
1 TATAACCAATTCATATATCATTTTTCAGATAACCGATTTATATAACCATTTCATATATTTATTTC
26620364 TA
66 TA
*
26620366 TATAACCAATTCATATATCATTTTTTTAGATAACCGATTTATATAACCATTTCATATATTTATTT
1 TATAACCAATTCATATATCA-TTTTTCAGATAACCGATTTATATAACCATTTCATATATTTATTT
26620431 TCATTTACAC
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
67 18 0.31
68 40 0.69
ACGTcount: A:0.34, C:0.14, G:0.03, T:0.49
Consensus pattern (67 bp):
TATAACCAATTCATATATCATTTTTCAGATAACCGATTTATATAACCATTTCATATATTTATTTC
TA
Found at i:26625546 original size:30 final size:30
Alignment explanation
Indices: 26625510--26625592 Score: 112
Period size: 30 Copynumber: 2.8 Consensus size: 30
26625500 TCAGAATATG
*
26625510 GAAGCCTTTGTGGCTGTTCTCTGATAAGTA
1 GAAGCCTTTGTGGCTATTCTCTGATAAGTA
* ** *
26625540 GAAGCCTTTGTTGCTATTCTCAAATAAGTG
1 GAAGCCTTTGTGGCTATTCTCTGATAAGTA
*
26625570 GAAGCCTATGTGGCTATTCTCTG
1 GAAGCCTTTGTGGCTATTCTCTG
26625593 TTATACGTGA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (30 bp):
GAAGCCTTTGTGGCTATTCTCTGATAAGTA
Found at i:26625686 original size:55 final size:56
Alignment explanation
Indices: 26625591--26625712 Score: 192
Period size: 55 Copynumber: 2.2 Consensus size: 56
26625581 GGCTATTCTC
* * *
26625591 TGTTATACGTGAGCCGTTGTGGCTGATTCTGTTAAATGCGCCTTCGTGACAAAGTA
1 TGTTATATGTGAGCCATTGTGGCTGATTCTGTTAAATGCGCCTTCATGACAAAGTA
* *
26625647 TGTTATATGTGAGCCATTGT-GCTGATTTTGTTAAATGCGCCTTCATGACAAAGTC
1 TGTTATATGTGAGCCATTGTGGCTGATTCTGTTAAATGCGCCTTCATGACAAAGTA
26625702 TGTTATATGTG
1 TGTTATATGTG
26625713 GACTCTTTTG
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
55 43 0.70
56 18 0.30
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (56 bp):
TGTTATATGTGAGCCATTGTGGCTGATTCTGTTAAATGCGCCTTCATGACAAAGTA
Found at i:26629737 original size:177 final size:177
Alignment explanation
Indices: 26629441--26629790 Score: 619
Period size: 177 Copynumber: 2.0 Consensus size: 177
26629431 TCGAATCTCG
*
26629441 ATTTTGGCTTACACATGTTTTTTTTACTCAAGGAAATTTTTTAAAGTGTATAATGTCTCAACAAC
1 ATTTTGGCTTACACAGGTTTTTTTTACTCAAGGAAATTTTTTAAAGTGTATAATGTCTCAACAAC
*
26629506 AAACAACAAAGTAAAGACCCTCAAACAATAAAATAAATAAAAGCCACAATTTCCACTTAGTAATA
66 AAACAACAAAGTAAAGACCCTCAAACAAGAAAATAAATAAAAGCCACAATTTCCACTTAGTAATA
26629571 AAAAATAAACAAGAGATAAATCATGTATCACATAAGACCCATATATT
131 AAAAATAAACAAGAGATAAATCATGTATCACATAAGACCCATATATT
* *
26629618 ATTTTGGCTTACACAGGTTTTTTTTACTCAAGGTAATTTTTTAGAGTGTATAATGTCTCAACAAC
1 ATTTTGGCTTACACAGGTTTTTTTTACTCAAGGAAATTTTTTAAAGTGTATAATGTCTCAACAAC
* * * *
26629683 GATCAATAAAGTAAAGACCCTCAAACAAGAAAATAAATAAAAGCCACAATTTCCACTTAGTAATC
66 AAACAACAAAGTAAAGACCCTCAAACAAGAAAATAAATAAAAGCCACAATTTCCACTTAGTAATA
*
26629748 AACAATAAACAAGAGATAAATCATGTATCACATAAGACCCATA
131 AAAAATAAACAAGAGATAAATCATGTATCACATAAGACCCATA
26629791 CATCAAATCC
Statistics
Matches: 164, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 164 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (177 bp):
ATTTTGGCTTACACAGGTTTTTTTTACTCAAGGAAATTTTTTAAAGTGTATAATGTCTCAACAAC
AAACAACAAAGTAAAGACCCTCAAACAAGAAAATAAATAAAAGCCACAATTTCCACTTAGTAATA
AAAAATAAACAAGAGATAAATCATGTATCACATAAGACCCATATATT
Found at i:26632906 original size:18 final size:18
Alignment explanation
Indices: 26632883--26632932 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
26632873 TAGGTTTCCA
*
26632883 AAAATGGAAATGATATTG
1 AAAATGGAAATGATAATG
* *
26632901 AAAATGAAAATGAAAATG
1 AAAATGGAAATGATAATG
26632919 AAAATGGAAATGAT
1 AAAATGGAAATGAT
26632933 CCATTTATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.20, T:0.22
Consensus pattern (18 bp):
AAAATGGAAATGATAATG
Found at i:26632908 original size:6 final size:6
Alignment explanation
Indices: 26632883--26632931 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
26632873 TAGGTTTCCA
* * * *
26632883 AAAATG GAAATG ATATTG AAAATG AAAATG AAAATG AAAATG GAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
26632931 A
1 A
26632932 TCCATTTATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.20
Consensus pattern (6 bp):
AAAATG
Found at i:26633112 original size:26 final size:26
Alignment explanation
Indices: 26633076--26633135 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
26633066 ATATATTTTC
* **
26633076 TCAAAATTTTACTAGTGACAAAATCG
1 TCAAAATTTTACCAAAGACAAAATCG
* *
26633102 TCAACATTTTACCAAAGGCAAAATCG
1 TCAAAATTTTACCAAAGACAAAATCG
26633128 TCAAAATT
1 TCAAAATT
26633136 GTTTTATATG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28
Consensus pattern (26 bp):
TCAAAATTTTACCAAAGACAAAATCG
Found at i:26642374 original size:22 final size:22
Alignment explanation
Indices: 26642343--26642387 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
26642333 ATTACTTATC
*
26642343 TTATTATATATCTATTT-TATTA
1 TTATTATATA-ATATTTATATTA
*
26642365 TTATTTTATAATATTTATATTA
1 TTATTATATAATATTTATATTA
26642387 T
1 T
26642388 GTAATGCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATTATATAATATTTATATTA
Found at i:26660430 original size:11 final size:11
Alignment explanation
Indices: 26660398--26660431 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
26660388 GTCGTAAAAT
*
26660398 TTATTTTAATT
1 TTATTTTAATA
26660409 TTATTTTAATA
1 TTATTTTAATA
26660420 TTATTTTAATA
1 TTATTTTAATA
26660431 T
1 T
26660432 CTACAGCATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTATTTTAATA
Found at i:26665559 original size:21 final size:21
Alignment explanation
Indices: 26665535--26665576 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26665525 ATCCAATATG
**
26665535 CAATTAAGTCATTAATAACAC
1 CAATTAAACCATTAATAACAC
*
26665556 CAATTAAACCTTTAATAACAC
1 CAATTAAACCATTAATAACAC
26665577 ATAATCATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.29
Consensus pattern (21 bp):
CAATTAAACCATTAATAACAC
Found at i:26669656 original size:18 final size:18
Alignment explanation
Indices: 26669635--26669671 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26669625 GTAGGTTTCC
* *
26669635 AAAAATGGAAATGGAAAT
1 AAAAATGAAAATGAAAAT
26669653 AAAAATGAAAATGAAAAT
1 AAAAATGAAAATGAAAAT
26669671 A
1 A
26669672 GGGATGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (18 bp):
AAAAATGAAAATGAAAAT
Found at i:26672638 original size:15 final size:15
Alignment explanation
Indices: 26672618--26672669 Score: 52
Period size: 17 Copynumber: 3.3 Consensus size: 15
26672608 TGATTGTTAA
*
26672618 AAAAATTTTAATATT
1 AAAAATTCTAATATT
*
26672633 AAAAA-TCTAAAATAT
1 AAAAATTCTAATAT-T
26672648 AAATAATTCTAATATTT
1 AAA-AATTCTAATA-TT
26672665 AAAAA
1 AAAAA
26672670 AATTAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
14 6 0.20
15 9 0.30
16 4 0.13
17 10 0.33
18 1 0.03
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAATTCTAATATT
Found at i:26675571 original size:28 final size:28
Alignment explanation
Indices: 26675524--26675579 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
26675514 TTAAAAAGTA
*
26675524 AATTTAAATTTGAAATAAAAATTTATTT
1 AATTTAAATTTGAAATAAAAATTAATTT
26675552 AATTTAAA-TTG-AATGGAAAAATTAATTT
1 AATTTAAATTTGAAAT--AAAAATTAATTT
26675580 TTTCAATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 3 0.12
27 3 0.12
28 19 0.76
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (28 bp):
AATTTAAATTTGAAATAAAAATTAATTT
Found at i:26683595 original size:23 final size:23
Alignment explanation
Indices: 26683552--26683595 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
26683542 TTTATAGTGA
* *
26683552 TATTATATTAGATGATGAATTCT
1 TATTATAGTAGATGATAAATTCT
26683575 TATTATAGTA-ATGATTAAATT
1 TATTATAGTAGATGA-TAAATT
26683596 GTAAAAGTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (23 bp):
TATTATAGTAGATGATAAATTCT
Found at i:26693751 original size:25 final size:25
Alignment explanation
Indices: 26693717--26693789 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 25
26693707 TAGGGTTGCC
*
26693717 GATTTATAGCTCGTGAGAGTATACT
1 GATTTATAGCTCGTGAGAGCATACT
*
26693742 GATTTATAGCTCGTAAGAGCATA-T
1 GATTTATAGCTCGTGAGAGCATACT
* *
26693766 CATTCATAGCTCGTGAGAGCATAC
1 GATTTATAGCTCGTGAGAGCATAC
26693790 CGATCTTCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
24 21 0.50
25 21 0.50
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (25 bp):
GATTTATAGCTCGTGAGAGCATACT
Found at i:26701337 original size:25 final size:25
Alignment explanation
Indices: 26701299--26701355 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
26701289 TCATTAGGGT
**
26701299 TATCGATTTGTAGCTCGTGAGAGCA
1 TATCGATTCATAGCTCGTGAGAGCA
26701324 TATCGATTCATAGCTCGTGAGAGCA
1 TATCGATTCATAGCTCGTGAGAGCA
*
26701349 TACCGAT
1 TATCGAT
26701356 CTTCAGCTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (25 bp):
TATCGATTCATAGCTCGTGAGAGCA
Found at i:26701363 original size:25 final size:26
Alignment explanation
Indices: 26701310--26701401 Score: 88
Period size: 25 Copynumber: 3.7 Consensus size: 26
26701300 ATCGATTTGT
* *
26701310 AGCTCGTGA-GAGCATATCGATTCAT-
1 AGCTCGTGATGAGCATACCGA-TCTTC
26701335 AGCTCGTGA-GAGCATACCGATCTTC
1 AGCTCGTGATGAGCATACCGATCTTC
**
26701360 AGCTC-AAATGAGCATACCGAT-TTAC
1 AGCTCGTGATGAGCATACCGATCTT-C
26701385 AGCTCGT-ATGAGCATAC
1 AGCTCGTGATGAGCATAC
26701402 ATGTACATGA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
24 6 0.10
25 52 0.90
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (26 bp):
AGCTCGTGATGAGCATACCGATCTTC
Found at i:26702635 original size:12 final size:12
Alignment explanation
Indices: 26702618--26702647 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26702608 TCAGGCTGTT
26702618 ACACGGCCTAGC
1 ACACGGCCTAGC
*
26702630 ACACGGCCTGGC
1 ACACGGCCTAGC
26702642 ACACGG
1 ACACGG
26702648 GCGTTTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:26705076 original size:27 final size:27
Alignment explanation
Indices: 26705046--26705223 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26705036 ATATTGAGTC
* * * *
26705046 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26705073 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26705100 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26705128 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26705155 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26705182 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26705209 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26705224 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26705185 original size:82 final size:81
Alignment explanation
Indices: 26705067--26705222 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26705057 TGCTATATAA
* *
26705067 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26705132 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26705149 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26705213 CACTTAGTGC
65 CACTTAGTGC
26705223 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26725073 original size:49 final size:49
Alignment explanation
Indices: 26725017--26725145 Score: 213
Period size: 49 Copynumber: 2.6 Consensus size: 49
26725007 TTTATTTTCT
* *
26725017 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCTCATAACATATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCTCATAACATATAC
*
26725066 CGATGCCATAGCCCAGCTATGGTCTTACATGTAATCTCATAACATATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCTCATAACATATAC
* *
26725115 CGATGCCATAGGCTAGCTATGGTCTTACACG
1 CGATGCCATAGCCCAGCTATGGTCTTACACG
26725146 AAGTTACATA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
49 74 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCTCATAACATATAC
Found at i:26726360 original size:23 final size:23
Alignment explanation
Indices: 26726334--26726408 Score: 105
Period size: 23 Copynumber: 3.3 Consensus size: 23
26726324 ATAAGTGCCA
26726334 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
* * *
26726357 CACTGATACGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
* *
26726380 CATTGAAATGTAGCTGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
26726403 CACTGA
1 CACTGA
26726409 TCAATAATAC
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:26741015 original size:38 final size:39
Alignment explanation
Indices: 26740924--26741015 Score: 98
Period size: 38 Copynumber: 2.4 Consensus size: 39
26740914 CACCATCCTA
26740924 AAGCCTACTAGGCACTAAGCCCGATAAGTACACTGGCACG
1 AAGCCTACTAGGCACTAA-CCCGATAAGTACACTGGCACG
** * * *
26740964 AAGTTTACTAGGCATTAA-CCGAT-AGATACACTGGTATG
1 AAGCCTACTAGGCACTAACCCGATAAG-TACACTGGCACG
*
26741002 AAGCCTACCAGGCA
1 AAGCCTACTAGGCA
26741016 ACAAGGCCCG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
37 2 0.05
38 26 0.60
40 15 0.35
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (39 bp):
AAGCCTACTAGGCACTAACCCGATAAGTACACTGGCACG
Found at i:26743059 original size:22 final size:22
Alignment explanation
Indices: 26743031--26743073 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
26743021 TGTCGAGTGT
26743031 CAATGTCACGACATTACAGGAC
1 CAATGTCACGACATTACAGGAC
*
26743053 CAATGTCATGACATTACAGGA
1 CAATGTCACGACATTACAGGA
26743074 ATTTTGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (22 bp):
CAATGTCACGACATTACAGGAC
Found at i:26745653 original size:8 final size:8
Alignment explanation
Indices: 26745640--26745664 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26745630 TATACTAAAC
26745640 AATAAAAT
1 AATAAAAT
26745648 AATAAAAT
1 AATAAAAT
26745656 AATAAAAT
1 AATAAAAT
26745664 A
1 A
26745665 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:26746672 original size:21 final size:21
Alignment explanation
Indices: 26746647--26746689 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26746637 TGGCTCCGCC
26746647 ACTGGATATACCAAACCCACT
1 ACTGGATATACCAAACCCACT
26746668 ACTGGATATACCAAACCCACT
1 ACTGGATATACCAAACCCACT
26746689 A
1 A
26746690 TCAGTGATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.33, G:0.09, T:0.19
Consensus pattern (21 bp):
ACTGGATATACCAAACCCACT
Found at i:26765736 original size:50 final size:50
Alignment explanation
Indices: 26765626--26765874 Score: 229
Period size: 50 Copynumber: 4.9 Consensus size: 50
26765616 ACATTAGGGG
**
26765626 GATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA
* *
26765677 GATTATGAGAGGTCCCATGTAAGATCATGTCTGGGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* *
26765730 GATGAGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 GATGAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** * * *
26765780 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATTGGCA--GTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-A
* * ** * *
26765829 GAGGAAACATCCCATGTAAGACCATGTCTGGGAAATGGCTTTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
26765875 TGTTATTATC
Statistics
Matches: 165, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
48 1 0.01
49 40 0.24
50 77 0.47
51 3 0.02
53 4 0.02
54 6 0.04
56 34 0.21
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:26766091 original size:12 final size:12
Alignment explanation
Indices: 26766074--26766113 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
26766064 ATGAGTTATT
*
26766074 TAAGTAAGCTAG
1 TAAGTAAGCAAG
26766086 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
26766098 TAAGTAAACAAG
1 TAAGTAAGCAAG
26766110 TAAG
1 TAAG
26766114 AGAGTAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:26766110 original size:20 final size:20
Alignment explanation
Indices: 26766087--26766125 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26766077 GTAAGCTAGT
26766087 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26766107 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26766126 GATGAAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26767535 original size:40 final size:40
Alignment explanation
Indices: 26767476--26767600 Score: 189
Period size: 40 Copynumber: 3.1 Consensus size: 40
26767466 GCTTGCAATG
* *
26767476 CATTGACTTGATTATGTTACTATAAGCATGTTAAGCATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
* *
26767516 CATTGAATTGATTACGTTACCATAAGCATGTTAACCATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
*
26767556 CATTGAATTGATTATGTTTCCATAAGCATG-TAAGACATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAG-CATGC
26767596 CATTG
1 CATTG
26767601 TACTTAAATC
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (40 bp):
CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
Found at i:26772916 original size:30 final size:30
Alignment explanation
Indices: 26772882--26772938 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
26772872 TGGGACACAC
*
26772882 GGCCGTGTCACCTGGCAGTGTGTCACATAT
1 GGCCGTGTCACCTGGCAATGTGTCACATAT
*
26772912 GGCCGTTTCACCTGGCAATGTGTCACA
1 GGCCGTGTCACCTGGCAATGTGTCACA
26772939 CACGGCTGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26
Consensus pattern (30 bp):
GGCCGTGTCACCTGGCAATGTGTCACATAT
Found at i:26773819 original size:24 final size:25
Alignment explanation
Indices: 26773792--26773906 Score: 88
Period size: 25 Copynumber: 4.6 Consensus size: 25
26773782 GTACATGTAT
* *
26773792 GCTCATACGAGCTGTA-AATGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
* *
26773816 GCTCCTCCGAGCTGAATAACGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
** * **
26773841 GCTCATGTGAGCTGAATCACAAGAA
1 GCTCATACGAGCTGAATAACGGGAA
* * * * *
26773866 ACTCATATGAGCTGTAGAACAGGAA
1 GCTCATACGAGCTGAATAACGGGAA
*
26773891 GCTCATAAGAGCTGAA
1 GCTCATACGAGCTGAA
26773907 ATTGGTGACC
Statistics
Matches: 71, Mismatches: 19, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
24 13 0.18
25 58 0.82
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGGAA
Found at i:26773852 original size:25 final size:25
Alignment explanation
Indices: 26773824--26773906 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
26773814 AAGCTCCTCC
* *
26773824 GAGCTGAATAACGGGAAGCTCATGT
1 GAGCTGAATAACAGGAAGCTCATAT
* * *
26773849 GAGCTGAATCACAAGAAACTCATAT
1 GAGCTGAATAACAGGAAGCTCATAT
* * *
26773874 GAGCTGTAGAACAGGAAGCTCATAA
1 GAGCTGAATAACAGGAAGCTCATAT
26773899 GAGCTGAA
1 GAGCTGAA
26773907 ATTGGTGACC
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.18
Consensus pattern (25 bp):
GAGCTGAATAACAGGAAGCTCATAT
Found at i:26784638 original size:6 final size:6
Alignment explanation
Indices: 26784629--26784663 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
26784619 ACTGATACTA
26784629 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAA
1 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAA
26784664 CTTATTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.14
Consensus pattern (6 bp):
CAAAAT
Found at i:26786791 original size:14 final size:15
Alignment explanation
Indices: 26786766--26786794 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26786756 AATTTGGAAT
26786766 TTTTTCTATGTTTTC
1 TTTTTCTATGTTTTC
26786781 TTTTTCT-TGTTTTC
1 TTTTTCTATGTTTTC
26786795 AGAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.03, C:0.14, G:0.07, T:0.76
Consensus pattern (15 bp):
TTTTTCTATGTTTTC
Found at i:26794300 original size:38 final size:38
Alignment explanation
Indices: 26794257--26794346 Score: 153
Period size: 38 Copynumber: 2.4 Consensus size: 38
26794247 ATGTGATTTT
* **
26794257 AAGTGAAAAGTGATATAATGAGCATGTCTCACATGTTA
1 AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
26794295 AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
1 AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
26794333 AAGTGAAAAGTGAT
1 AAGTGAAAAGTGAT
26794347 TTTTAAGTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.24
Consensus pattern (38 bp):
AAGTGAAAAGTGATATAATGAGCATGTCTCACAGGCCA
Found at i:26794356 original size:18 final size:19
Alignment explanation
Indices: 26794333--26794368 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26794323 TCACAGGCCA
26794333 AAGTG-AAAAGTGATTTTT
1 AAGTGAAAAAGTGATTTTT
26794351 AAGTGAAAAAGTGATTTT
1 AAGTGAAAAAGTGATTTT
26794369 GTGGCCATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (19 bp):
AAGTGAAAAAGTGATTTTT
Found at i:26794566 original size:47 final size:47
Alignment explanation
Indices: 26794457--26794566 Score: 139
Period size: 47 Copynumber: 2.3 Consensus size: 47
26794447 TATCCACAAC
* * * *
26794457 ATGTGGTAGTTTATCTGCGAAAGTAGTGGCTTGTCCACAATTTTATT
1 ATGTGGTAGTTTATCTACAAAAGTAGTGACTTGTCCACAATTTGATT
* * * * *
26794504 ATGTGGCAATATATCTACAAAAGTGGTGACTTGTCCATAATTTGATT
1 ATGTGGTAGTTTATCTACAAAAGTAGTGACTTGTCCACAATTTGATT
26794551 ATGTGGTAGTTTATCT
1 ATGTGGTAGTTTATCT
26794567 GCATTACCAT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (47 bp):
ATGTGGTAGTTTATCTACAAAAGTAGTGACTTGTCCACAATTTGATT
Found at i:26800333 original size:91 final size:91
Alignment explanation
Indices: 26800195--26800402 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
26800185 TTGATTTTAG
* *
26800195 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
26800260 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
26800287 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
26800352 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
26800378 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
26800403 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:26800371 original size:26 final size:28
Alignment explanation
Indices: 26800317--26800377 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
26800307 TATTATCAAG
* *
26800317 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
26800345 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
26800371 AATTATA
1 AATTATA
26800378 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:26800377 original size:44 final size:43
Alignment explanation
Indices: 26800235--26800377 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
26800225 GAATTTTATG
* *
26800235 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
26800279 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
26800326 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
26800370 AAATTATA
1 AAATTATA
26800378 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:26800495 original size:59 final size:57
Alignment explanation
Indices: 26800429--26800617 Score: 152
Period size: 59 Copynumber: 3.2 Consensus size: 57
26800419 ATTTTATTAA
26800429 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
26800488 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
26800549 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
26800608 ATCATATATT
1 ATCATATATT
26800618 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
59 20 0.20
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 6 0.06
66 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:26800526 original size:66 final size:64
Alignment explanation
Indices: 26800456--26800656 Score: 183
Period size: 66 Copynumber: 3.2 Consensus size: 64
26800446 AAATATATTT
26800456 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
26800521 G
64 G
* * * * * **
26800522 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
26800576 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
26800641 G
64 G
*
26800642 AATATTGATT-TTTAA
1 AATATTAATTATTTAA
26800657 GAATTTTATT
Statistics
Matches: 103, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 9 0.09
65 7 0.07
66 25 0.24
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:26800542 original size:120 final size:120
Alignment explanation
Indices: 26800418--26800715 Score: 508
Period size: 120 Copynumber: 2.5 Consensus size: 120
26800408 AATTATTTTA
* * *
26800418 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
26800482 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
26800538 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
* *
26800603 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTTTTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
26800658 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
26800716 ATGATTAAAT
Statistics
Matches: 167, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 160 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:26800578 original size:15 final size:15
Alignment explanation
Indices: 26800543--26800594 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26800533 TTAAGAATTT
*
26800543 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26800557 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26800571 TATTTAATAATAAT-
1 TATTTAATTATAATA
26800585 TATGTTAATT
1 TAT-TTAATT
26800595 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26800687 original size:18 final size:17
Alignment explanation
Indices: 26800659--26800693 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26800649 ATTTTTAAGA
*
26800659 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26800676 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26800694 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26800923 original size:44 final size:45
Alignment explanation
Indices: 26800858--26800948 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
26800848 ACCTCTATTC
* * *
26800858 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAGTCCAATA
***
26800902 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAGTCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAGTCCAATA
26800947 CA
1 CA
26800949 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.36, C:0.29, G:0.08, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAGTCCAATA
Found at i:26800963 original size:17 final size:16
Alignment explanation
Indices: 26800929--26800981 Score: 88
Period size: 16 Copynumber: 3.2 Consensus size: 16
26800919 GATTAGCTAT
*
26800929 TACACCTCTAGTCCAA
1 TACACCTCTAATCCAA
26800945 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
26800962 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26800978 TACA
1 TACA
26800982 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 19 0.54
17 16 0.46
ACGTcount: A:0.36, C:0.38, G:0.02, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26806196 original size:8 final size:8
Alignment explanation
Indices: 26806183--26806208 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
26806173 TTATGAGTGA
26806183 TGACATTT
1 TGACATTT
26806191 TGACATTT
1 TGACATTT
26806199 TGACATTT
1 TGACATTT
26806207 TG
1 TG
26806209 GTGCTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (8 bp):
TGACATTT
Found at i:26809186 original size:11 final size:11
Alignment explanation
Indices: 26809167--26809208 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
26809157 TTATCAATTC
26809167 ATTATTTTTAAT
1 ATTA-TTTTAAT
26809179 ATTATTTTAAT
1 ATTATTTTAAT
*
26809190 ATTGA-CTTAAT
1 ATT-ATTTTAAT
26809201 ATTATTTT
1 ATTATTTT
26809209 TGAACTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 1 0.04
11 20 0.77
12 5 0.19
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (11 bp):
ATTATTTTAAT
Done.