Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 88 of 216
Found at i:27056990 original size:14 final size:14
Alignment explanation
Indices: 27056971--27057000 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
27056961 CTCGAACAGC
27056971 AAGATGATTAACTA
1 AAGATGATTAACTA
27056985 AAGATGATTAACTA
1 AAGATGATTAACTA
27056999 AA
1 AA
27057001 AAACCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (14 bp):
AAGATGATTAACTA
Found at i:27059956 original size:14 final size:14
Alignment explanation
Indices: 27059935--27059976 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
27059925 CTTAATTAAA
27059935 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
27059949 CTATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
27059964 CCATACTCCCTAA
1 CCATAATCCCTAA
27059977 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:27059973 original size:15 final size:15
Alignment explanation
Indices: 27059931--27059977 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
27059921 AACCCTTAAT
27059931 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
27059945 T-AATCTATAATCCC
1 TAAATCCATAATCCC
*
27059959 TAAATCCATACTCCC
1 TAAATCCATAATCCC
27059974 TAAA
1 TAAA
27059978 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:27060241 original size:300 final size:290
Alignment explanation
Indices: 27059768--27060372 Score: 731
Period size: 293 Copynumber: 2.0 Consensus size: 290
27059758 AATTATACAT
*
27059768 TTTTACAATTACATAAGAAAATATTTAAAATATAAATAAAAAATTAATCTAAACCCAAAACCTTA
1 TTTTACAATTATATAAGAAAATATTTAAAATATAAATAAAAAATTAATCTAAACCCAAAACCTTA
* * *
27059833 ACTCGACCCTTGAAACCCTAAATCCCTAACTCTTAACCACTAACATCTAACCCCTAAACTCCTAA
66 ACTCGACCCCTGAAACCCTAAATCCCTAACTATTAACCACTAACACCTAACCCCTAAACTCCTAA
* *
27059898 CCCCTAAACCTTAAATCCTAGCCAACCCTTAATTAAACCATAATCCCTAATCTATAATCCCTAAA
131 CCCCTAAACCTTAAATCCCAACC-ACCCTTAATT--ACCATAAT--C----C-ATAATCCCTAAA
* ** * *
27059963 TCCATACTCCCTAAACCTTAAAATATAAACTCCTAAATTGGCCTTAAATCTTAAATTAATCATAT
186 CCCATACTCCCTAAACCTTAAAATATAAACTCCTAAACCGGCCTTAAATATTAAATAAATCATAT
*
27060028 ACCCTAAACTAAAAACCCTAAACAAATTTATTATTATCTC
251 ACCCTAAACCAAAAACCCTAAACAAATTTATTATTATCTC
**
27060068 TTTTACAATTATATAAGAGCATATTTAAAATATAAATTAAAAAAATAATTAATCTAAACCCAAAA
1 TTTTACAATTATATAAGAAAATATTTAAAATATAAA-T---AAAA-AATTAATCTAAACCC-AAA
* * ** * * *
27060133 ACC-TAATTCGACCCCT-AAATCCCTAACT-TTTAACTATTAGCACATCTAACCCCTAAACCTCT
60 ACCTTAACTCGACCCCTGAAA-CCCTAAATCCCTAACTATTAAC-CA-CTAACACCT-AACCCCT
* *
27060195 -AACCCTCTAACCCCTAAATCTTAAATCCCAACC-CCC-TAA-T-CCATAATCCATAATCCCTAA
121 AAACTC-CTAACCCCTAAACCTTAAATCCCAACCACCCTTAATTACCATAATCCATAATCCCTAA
* *
27060255 ACCCATACTCCCTAAATCTTAAAATATGAACTCCTAAACCGGCCTTAAATATTAAATAAATCATA
185 ACCCATACTCCCTAAACCTTAAAATATAAACTCCTAAACCGGCCTTAAATATTAAATAAATCATA
*
27060320 TACCCTAAACCAAAAACTCTAAACAAATTTATTATTATCTC
250 TACCCTAAACCAAAAACCCTAAACAAATTTATTATTATCTC
27060361 TTTTACAATTAT
1 TTTTACAATTAT
27060373 TTTAAATAAT
Statistics
Matches: 268, Mismatches: 26, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
293 120 0.45
294 1 0.00
298 1 0.00
300 40 0.15
301 1 0.00
303 1 0.00
304 19 0.07
305 38 0.14
306 17 0.06
307 30 0.11
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.29
Consensus pattern (290 bp):
TTTTACAATTATATAAGAAAATATTTAAAATATAAATAAAAAATTAATCTAAACCCAAAACCTTA
ACTCGACCCCTGAAACCCTAAATCCCTAACTATTAACCACTAACACCTAACCCCTAAACTCCTAA
CCCCTAAACCTTAAATCCCAACCACCCTTAATTACCATAATCCATAATCCCTAAACCCATACTCC
CTAAACCTTAAAATATAAACTCCTAAACCGGCCTTAAATATTAAATAAATCATATACCCTAAACC
AAAAACCCTAAACAAATTTATTATTATCTC
Found at i:27060926 original size:115 final size:114
Alignment explanation
Indices: 27060607--27061031 Score: 600
Period size: 115 Copynumber: 3.7 Consensus size: 114
27060597 CAGATTTTTG
* * *
27060607 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTAGGCTTATGTTTTTTTGCGGCGCTTTC
* * * * **
27060672 TAAAAAATGCCGTTAAAGCCCTGAGCGTTAGCGGCATTTTCTTAAAAAC
66 TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* * * * * *
27060721 GTCGCTAAATCCCCCGAAAGCTCAGAAAACGGAGTCGTTATGCTTA-GTTTTTTTGTGGCGTTTT
1 GCCGCTAAAT-CCCCGAAAGCTCACAAAACGGCGTCGTTAGGCTTATGTTTTTTTGCGGCGCTTT
27060785 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
65 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* * * *
27060835 GCCGCTAAATCCCCGAAAGCTCACAAAACAGCGTTGTTGGGCTTATGTTTTTTTCGCGGCGTTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTAGGCTTATGTTTTTTT-GCGGCGCTTT
* *
27060900 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGGTTTCCTAAAAAC
65 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* * *
27060950 GCCGTTAAATCCCCGAAAGCTCACAAAACGACGTCGTTAGGCTTATGTTTTTTTGCGGCACTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTAGGCTTATGTTTTTTTGCGGCGCTTTC
*
27061015 TCAAAAACGCAGCTAAA
66 TCAAAAACGCCGCTAAA
27061032 TCCCCGAAAG
Statistics
Matches: 278, Mismatches: 30, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
113 29 0.10
114 111 0.40
115 138 0.50
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (114 bp):
GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTAGGCTTATGTTTTTTTGCGGCGCTTTC
TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
Found at i:27061024 original size:229 final size:228
Alignment explanation
Indices: 27060607--27061031 Score: 629
Period size: 229 Copynumber: 1.9 Consensus size: 228
27060597 CAGATTTTTG
* *
27060607 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
* * * * * *
27060672 TAAAAAATGCCGTTAAAGCCCTGAGCGTTAGCGGCATTTTCTTAAAAACGTCGCTAAATCCCCCG
66 TAAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCAGTTTCCTAAAAACGCCGCTAAATCCCCCG
* * * ** *
27060737 AAAGCTCAGAAAACGGAGTCGTTATGCTTAGTTTTTTTGTGGCGTTTTCTCAAAAACGCCGCTAA
131 AAAGCTCACAAAACGGAGTCGTTAGGCTTAGTTTTTTTGCGGCACTTTCTCAAAAACGCAGCTAA
27060802 AGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
196 AGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* * *
27060835 GCCGCTAAATCCCCGAAAGCTCACAAAACAGCGTTGTTGGGCTTATGTTTTTTTCGCGGCGTTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTT-GCGGCGCTTT
* * *
27060900 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGGTTTCCTAAAAACGCCGTTAAAT-CCCC
65 CTAAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCAGTTTCCTAAAAACGCCGCTAAATCCCCC
27060964 GAAAGCTCACAAAAC-GACGTCGTTAGGCTTATGTTTTTTTGCGGCACTTTCTCAAAAACGCAGC
130 GAAAGCTCACAAAACGGA-GTCGTTAGGCTTA-GTTTTTTTGCGGCACTTTCTCAAAAACGCAGC
27061028 TAAA
193 TAAA
27061032 TCCCCGAAAG
Statistics
Matches: 174, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
227 2 0.01
228 80 0.46
229 92 0.53
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (228 bp):
GCCGCTAAATCCCCGAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
TAAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCAGTTTCCTAAAAACGCCGCTAAATCCCCCG
AAAGCTCACAAAACGGAGTCGTTAGGCTTAGTTTTTTTGCGGCACTTTCTCAAAAACGCAGCTAA
AGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
Found at i:27061032 original size:73 final size:73
Alignment explanation
Indices: 27060944--27061104 Score: 234
Period size: 73 Copynumber: 2.2 Consensus size: 73
27060934 GCGGTTTCCT
*
27060944 AAAAACGCCGTTAAATCCCCGAAAGCTCACAAAAC-GACGTCGTTAGGCTTATGTTTTTTTGCGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACTG-CGTCGTTAGGCTTATGTTTTTTTGCGG
27061008 CACTTTCTC
65 CACTTTCTC
* ** * *
27061017 AAAAACGCAGCTAAATCCCCGAAAGCTCGGAAAACTGTGTCGTTGGGCTTATGTTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACTGCGTCGTTAGGCTTATGTTTTTTTGCGGC
**
27061082 GTTTTCTC
66 ACTTTCTC
27061090 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
27061105 GCACTGAGCA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
73 77 0.99
74 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (73 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACTGCGTCGTTAGGCTTATGTTTTTTTGCGGC
ACTTTCTC
Found at i:27061158 original size:187 final size:186
Alignment explanation
Indices: 27060816--27061285 Score: 647
Period size: 187 Copynumber: 2.5 Consensus size: 186
27060806 CTGAGCATTA
* * *
27060816 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACAGCGTTGTTGGGCTTAT
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAT
* * *
27060881 GTTTTTTTCGCGGCGTTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGGTTTCCTAA
66 GTTTTTTT-GCGGCGTTTTCTCAAAAACGCCGCTAAAGCACTGAGCATTAGCGACGCTTTCCTAA
*** * *
27060946 AAACGCCGTTAAATCCCCGAAAGCTCACAAAAC-GACGTCGTTAGGCTTATGTTTTTTT
130 AAACGCCACAAAATCCCCAAAAGCTCACAAAACAG-CAT-GTTAGGCTTATGTTTTTTT
* * * * *
27061004 GCGGCACTTTCTCAAAAACGCAGCTAAATCCCCGAAAGCTCGGAAAACTGTGTCGTTGGGCTTAT
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAT
* *
27061069 GTTTTTTTGCGGCGTTTTCTCAAAAACGCCGCTAAAGCACTGAGCATTAGTGACGCTTTCTTAAA
66 GTTTTTTTGCGGCGTTTTCTCAAAAACGCCGCTAAAGCACTGAGCATTAGCGACGCTTTCCTAAA
* * *
27061134 AACGCCACAAAATCTCCAAAAGCTCAGAAAACAGCATGTTGGGCTTATGTTTTTTT
131 AACGCCACAAAATCCCCAAAAGCTCACAAAACAGCATGTTAGGCTTATGTTTTTTT
* *
27061190 GCAGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA-
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAT
* * * **
27061254 GGTTTTTTGCGACGCTTTCTGGAAAACGCCGC
66 GTTTTTTTGCGGCGTTTTCTCAAAAACGCCGC
27061286 GAAAAATACC
Statistics
Matches: 249, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
185 27 0.11
186 76 0.31
187 80 0.32
188 66 0.27
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (186 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAT
GTTTTTTTGCGGCGTTTTCTCAAAAACGCCGCTAAAGCACTGAGCATTAGCGACGCTTTCCTAAA
AACGCCACAAAATCCCCAAAAGCTCACAAAACAGCATGTTAGGCTTATGTTTTTTT
Found at i:27061260 original size:72 final size:72
Alignment explanation
Indices: 27061120--27061290 Score: 211
Period size: 72 Copynumber: 2.4 Consensus size: 72
27061110 GAGCATTAGT
* * * *
27061120 GACGCTTTCTTAAAAACGCCACAAAATCTCCAAAAGCTCAGAAAACAGCATGTTGGGCTTATGTT
1 GACGCTTTCTCAAAAACGCCGCAAAATCCCCAAAAGCTCAGAAAACAGCATGTTGGGCTTATGGT
27061185 TTTTTGC
66 TTTTTGC
* * * *
27061192 -AGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA-G
1 GA-CGCTTTCTCAAAAACGCCGCAAAATCCCCAAAAGCTCAGAAAACAGCAT-GTTGGGCTTATG
27061255 GTTTTTTGC
64 GTTTTTTGC
**
27061264 GACGCTTTCTGGAAAACGCCGCGAAAA
1 GACGCTTTCTCAAAAACGCCGC-AAAA
27061291 ATACCGCTAA
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
71 1 0.01
72 69 0.82
73 14 0.17
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (72 bp):
GACGCTTTCTCAAAAACGCCGCAAAATCCCCAAAAGCTCAGAAAACAGCATGTTGGGCTTATGGT
TTTTTGC
Found at i:27063062 original size:4 final size:4
Alignment explanation
Indices: 27063046--27063091 Score: 85
Period size: 4 Copynumber: 11.8 Consensus size: 4
27063036 CAGTTCGCTT
27063046 TGTC TGT- TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGT
1 TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGTC TGT
27063092 TTGTTTGTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 3 0.07
4 38 0.93
ACGTcount: A:0.00, C:0.22, G:0.26, T:0.52
Consensus pattern (4 bp):
TGTC
Found at i:27063583 original size:16 final size:18
Alignment explanation
Indices: 27063552--27063590 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
27063542 GATTATGTGA
27063552 TTGTGTCAACATTTATGC
1 TTGTGTCAACATTTATGC
*
27063570 TTGTG-CAA-ATTTATGT
1 TTGTGTCAACATTTATGC
27063586 TTGTG
1 TTGTG
27063591 GAGAATGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
17 3 0.15
18 5 0.25
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.49
Consensus pattern (18 bp):
TTGTGTCAACATTTATGC
Found at i:27065739 original size:26 final size:26
Alignment explanation
Indices: 27065710--27065761 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27065700 TTTAGTTTCC
**
27065710 TTAATTATAGTTTCTTTTTCTACAAG
1 TTAATTATAGTTTCTTAGTCTACAAG
*
27065736 TTAATTTTAGTTTCTTAGTCTACAAG
1 TTAATTATAGTTTCTTAGTCTACAAG
27065762 AATAAAATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.52
Consensus pattern (26 bp):
TTAATTATAGTTTCTTAGTCTACAAG
Found at i:27074220 original size:15 final size:14
Alignment explanation
Indices: 27074193--27074219 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27074183 TTTGACCATC
27074193 AACTTTTTAAAAAT
1 AACTTTTTAAAAAT
27074207 AACTTTTTAAAAA
1 AACTTTTTAAAAA
27074220 AAAGTTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AACTTTTTAAAAAT
Found at i:27076394 original size:5 final size:5
Alignment explanation
Indices: 27076384--27076409 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
27076374 AGTGTCGGGT
27076384 GAAAA GAAAA GAAAA GAAAA GAAAA G
1 GAAAA GAAAA GAAAA GAAAA GAAAA G
27076410 GATGATTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:27082323 original size:8 final size:8
Alignment explanation
Indices: 27082310--27082336 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
27082300 TTAACTAGTT
27082310 TAATTAAC
1 TAATTAAC
27082318 TAATTAAC
1 TAATTAAC
27082326 TAATTAAC
1 TAATTAAC
27082334 TAA
1 TAA
27082337 CTAGACCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (8 bp):
TAATTAAC
Found at i:27087302 original size:13 final size:13
Alignment explanation
Indices: 27087273--27087349 Score: 73
Period size: 13 Copynumber: 5.9 Consensus size: 13
27087263 CAAGCATGGA
**
27087273 GCTAAGTGATATG
1 GCTAAGTGATACC
*
27087286 GCTAAGTGGTACC
1 GCTAAGTGATACC
* * *
27087299 GCTAAGGGGTGCC
1 GCTAAGTGATACC
*
27087312 ACTAAGTGATACC
1 GCTAAGTGATACC
*
27087325 GCTAAGTGACACC
1 GCTAAGTGATACC
*
27087338 GCTAAGTAATAC
1 GCTAAGTGATAC
27087350 TGCGAAATGG
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (13 bp):
GCTAAGTGATACC
Found at i:27094420 original size:23 final size:23
Alignment explanation
Indices: 27094414--27094505 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 23
27094404 TTTATAATAC
27094414 TATTTTTTAAAATTTTAAATATA
1 TATTTTTTAAAATTTTAAATATA
* * *
27094437 TATTTTTAAAATTATTTTTAAAAATT
1 TATTTTTTAAA--A-TTTTAAATATA
*
27094463 TAATTTTTTTTAAATTTTAAATATA
1 T-A-TTTTTTAAAATTTTAAATATA
* *
27094488 -ATTTTTTAATATTATAAA
1 TATTTTTTAAAATTTTAAA
27094506 ACATTTAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
22 14 0.26
23 11 0.20
25 10 0.19
26 11 0.20
27 1 0.02
28 7 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTTTTTAAAATTTTAAATATA
Found at i:27094434 original size:22 final size:23
Alignment explanation
Indices: 27094394--27094449 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 23
27094384 GAAATGTACA
*
27094394 TTTTAAATGTTTTATAATACTAT-T
1 TTTTAAA-ATTTTATAATA-TATAT
27094418 TTTTAAAATTTTA-AATATATAT
1 TTTTAAAATTTTATAATATATAT
27094440 TTTTAAAATT
1 TTTTAAAATT
27094450 ATTTTTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 3 0.10
22 15 0.50
23 5 0.17
24 7 0.23
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTTAAAATTTTATAATATATAT
Found at i:27094454 original size:12 final size:13
Alignment explanation
Indices: 27094426--27094459 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
27094416 TTTTTTAAAA
27094426 TTTTAAATATATAT
1 TTTTAAA-ATATAT
27094440 TTTTAAAAT-TAT
1 TTTTAAAATATAT
27094452 TTTTAAAA
1 TTTTAAAA
27094460 ATTTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.55
13 2 0.10
14 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTAAAATATAT
Found at i:27100605 original size:21 final size:21
Alignment explanation
Indices: 27100579--27100632 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
27100569 TGACCAGTTA
27100579 TAATATATATTTTTAATTTTC
1 TAATATATATTTTTAATTTTC
* * *
27100600 TAATATAAATTTTTACTTTTT
1 TAATATATATTTTTAATTTTC
27100621 TAATATATATTT
1 TAATATATATTT
27100633 AAAAAAAGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (21 bp):
TAATATATATTTTTAATTTTC
Found at i:27100671 original size:18 final size:19
Alignment explanation
Indices: 27100648--27100691 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
27100638 AAGCCATAAT
27100648 TTTTTTAACAAATAAAT-A
1 TTTTTTAACAAATAAATCA
*
27100666 TTTTTTAATAAATAAATCA
1 TTTTTTAACAAATAAATCA
27100685 TTTTTTA
1 TTTTTTA
27100692 TTTTTTCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTTTTAACAAATAAATCA
Found at i:27100727 original size:24 final size:23
Alignment explanation
Indices: 27100674--27100729 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
27100664 TATTTTTTAA
* * *
27100674 TAAATAAATCATTTTTTATTTTT
1 TAAATAAATCAATTTTCACTTTT
*
27100697 TCCAATAAACTCAATTTTCACTTTT
1 T-AAATAAA-TCAATTTTCACTTTT
27100722 TAAATAAA
1 TAAATAAA
27100730 ATATTATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 1 0.04
24 12 0.46
25 13 0.50
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAATAAATCAATTTTCACTTTT
Found at i:27100808 original size:16 final size:16
Alignment explanation
Indices: 27100787--27100827 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
27100777 ATCTTTAAAA
27100787 ATAATTTAAAAAAATC
1 ATAATTTAAAAAAATC
*
27100803 ATAATTT-AAAAAATT
1 ATAATTTAAAAAAATC
27100818 AT-ATTTAAAA
1 ATAATTTAAAA
27100828 TTAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 12 0.52
16 7 0.30
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
ATAATTTAAAAAAATC
Found at i:27100829 original size:21 final size:23
Alignment explanation
Indices: 27100805--27100897 Score: 79
Period size: 22 Copynumber: 4.1 Consensus size: 23
27100795 AAAAAATCAT
27100805 AATTTAAAAAAT-TATATTT-AA
1 AATTTAAAAAATATATATTTAAA
*
27100826 AA-TTAAATAAATATATTTTTAAA
1 AATTTAAA-AAATATATATTTAAA
* *
27100849 AATTT-TAAAATATACA-TTAAA
1 AATTTAAAAAATATATATTTAAA
*
27100870 AATATTATAAAAATAATAAATTTAAA
1 AAT-TTA-AAAAAT-ATATATTTAAA
27100896 AA
1 AA
27100898 GTCATGTCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
20 5 0.09
21 14 0.25
22 15 0.26
23 5 0.09
24 7 0.12
25 4 0.07
26 7 0.12
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (23 bp):
AATTTAAAAAATATATATTTAAA
Found at i:27100994 original size:15 final size:14
Alignment explanation
Indices: 27100974--27101033 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 14
27100964 TAAAACCAAT
27100974 AATAAAAAATAAATA
1 AATAAAAAA-AAATA
27100989 AATAAAAGAAAAATA
1 AATAAAA-AAAAATA
*
27101004 AAAAAACTTAAAAAATA
1 AATAAA---AAAAAATA
27101021 AATAAAGAAAAAA
1 AATAAA-AAAAAA
27101034 CTTAAAAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
15 23 0.61
16 2 0.05
17 12 0.32
18 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (14 bp):
AATAAAAAAAAATA
Found at i:27101057 original size:24 final size:22
Alignment explanation
Indices: 27100992--27101051 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 22
27100982 ATAAATAAAT
*
27100992 AAAAGAAAAATAAAAAAACTTA
1 AAAAGAAAAAAAAAAAAACTTA
27101014 AAAA-ATAAATAAAGAAAAAACTTA
1 AAAAGA-AAA-AAA-AAAAAACTTA
27101038 AAAAGAAAAAAAAA
1 AAAAGAAAAAAAAA
27101052 TGAAAAAGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 1 0.03
22 9 0.27
23 5 0.15
24 17 0.52
25 1 0.03
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (22 bp):
AAAAGAAAAAAAAAAAAACTTA
Found at i:27102654 original size:21 final size:19
Alignment explanation
Indices: 27102620--27102663 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
27102610 CAATAATTCT
*
27102620 AAAAAAATAAAAAAATCTTA
1 AAAAAAAT-AAAAAATATTA
*
27102640 AAAATAAATATAAAATATTA
1 AAAA-AAATAAAAAATATTA
27102660 AAAA
1 AAAA
27102664 GTATGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAAAAATAAAAAATATTA
Found at i:27102654 original size:31 final size:31
Alignment explanation
Indices: 27102604--27102663 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
27102594 TTAAAATTTT
* * *
27102604 TCTTAACAATAATTCTAAAAAAATAAAAAAA
1 TCTTAAAAATAAATATAAAAAAATAAAAAAA
* *
27102635 TCTTAAAAATAAATATAAAATATTAAAAA
1 TCTTAAAAATAAATATAAAAAAATAAAAA
27102664 GTATGTTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (31 bp):
TCTTAAAAATAAATATAAAAAAATAAAAAAA
Found at i:27108002 original size:13 final size:13
Alignment explanation
Indices: 27107986--27108016 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
27107976 ACATAAAGGG
27107986 ATTGGCCAAAGTT
1 ATTGGCCAAAGTT
27107999 ATTGGCCAAAGTT
1 ATTGGCCAAAGTT
27108012 ATTGG
1 ATTGG
27108017 ATGTGGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (13 bp):
ATTGGCCAAAGTT
Found at i:27108936 original size:17 final size:17
Alignment explanation
Indices: 27108914--27108977 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
27108904 AATCTTAGAG
27108914 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
27108931 TTCTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--AG-C
27108950 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
27108967 TTTTAATTGTA
1 TTCTAATTGTA
27108978 GCCCTTGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 1 0.03
17 21 0.55
18 4 0.11
19 11 0.29
20 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:27108953 original size:36 final size:36
Alignment explanation
Indices: 27108906--27108976 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
27108896 GATTATGTAA
27108906 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
*
27108942 TCTTAGAGTTCTAATTGTATACAGCTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGT
27108977 AGCCCTTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:27108955 original size:19 final size:19
Alignment explanation
Indices: 27108905--27108961 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
27108895 TGATTATGTA
27108905 ATCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
*
27108924 ATAC--AG-CTTCTAATTGT
1 AT-CTTAGAGTTCTAATTGT
*
27108941 GTCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
27108960 AT
1 AT
27108962 ACAGCTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.03
17 11 0.37
18 4 0.13
19 13 0.43
20 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (19 bp):
ATCTTAGAGTTCTAATTGT
Found at i:27109276 original size:48 final size:48
Alignment explanation
Indices: 27109181--27109276 Score: 115
Period size: 48 Copynumber: 2.0 Consensus size: 48
27109171 TGAGGGAATT
* *
27109181 CTGTTGAATCCTTTATCGAGCGAGATTAGGCTGACTTAGGTGCTTTTA
1 CTGTTGAATCCATTATCGAGCGAGATTAGGCTGACTTAGGCGCTTTTA
* * *
27109229 CTGTTGAATCCATTATC-ATTGCGTG-TTAGGTTGACTTAGGCGTTTTTA
1 CTGTTGAATCCATTATCGA--GCGAGATTAGGCTGACTTAGGCGCTTTTA
27109277 AGCAAAGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.02
48 36 0.88
49 4 0.10
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.41
Consensus pattern (48 bp):
CTGTTGAATCCATTATCGAGCGAGATTAGGCTGACTTAGGCGCTTTTA
Found at i:27113591 original size:20 final size:20
Alignment explanation
Indices: 27113566--27113605 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
27113556 GATTAATTTT
27113566 TTTTATGAACTTTTTAAAAA
1 TTTTATGAACTTTTTAAAAA
** *
27113586 TTTTATTTATTTTTTAAAAA
1 TTTTATGAACTTTTTAAAAA
27113606 AAGTTTGAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTATGAACTTTTTAAAAA
Found at i:27113906 original size:25 final size:25
Alignment explanation
Indices: 27113872--27113922 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
27113862 AGACCAGCGA
27113872 ATCGTTATTGACTATTAAAGGACCT
1 ATCGTTATTGACTATTAAAGGACCT
27113897 ATCGTTATTGACTATTAAAGGACCT
1 ATCGTTATTGACTATTAAAGGACCT
27113922 A
1 A
27113923 AATTGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (25 bp):
ATCGTTATTGACTATTAAAGGACCT
Found at i:27113931 original size:25 final size:25
Alignment explanation
Indices: 27113876--27113931 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
27113866 CAGCGAATCG
**
27113876 TTATTGACTATTAAAGGACCTATCG
1 TTATTGACTATTAAAGGACCTATAA
27113901 TTATTGACTATTAAAGGACCTA-AA
1 TTATTGACTATTAAAGGACCTATAA
27113925 TTGATTG
1 TT-ATTG
27113932 GTTAACAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (25 bp):
TTATTGACTATTAAAGGACCTATAA
Found at i:27136442 original size:11 final size:11
Alignment explanation
Indices: 27136426--27136472 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
27136416 GACCACGGAA
27136426 GAAAGGAAAAT
1 GAAAGGAAAAT
*
27136437 GAAAGGAAACT
1 GAAAGGAAAAT
*
27136448 AGAAAGGAAAAA
1 -GAAAGGAAAAT
*
27136460 GAGA-GAAAAT
1 GAAAGGAAAAT
27136470 GAA
1 GAA
27136473 TGAGAGAAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
10 7 0.24
11 13 0.45
12 9 0.31
ACGTcount: A:0.64, C:0.02, G:0.28, T:0.06
Consensus pattern (11 bp):
GAAAGGAAAAT
Found at i:27136454 original size:12 final size:12
Alignment explanation
Indices: 27136425--27136458 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
27136415 TGACCACGGA
27136425 AGAAAGGAAAAT
1 AGAAAGGAAAAT
*
27136437 -GAAAGGAAACT
1 AGAAAGGAAAAT
27136448 AGAAAGGAAAA
1 AGAAAGGAAAA
27136459 AGAGAGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.65, C:0.03, G:0.26, T:0.06
Consensus pattern (12 bp):
AGAAAGGAAAAT
Found at i:27139253 original size:47 final size:47
Alignment explanation
Indices: 27139202--27139757 Score: 961
Period size: 47 Copynumber: 11.7 Consensus size: 47
27139192 TTAGGATTCT
* * *
27139202 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
27139249 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
27139296 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
27139343 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
27139392 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
27139439 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
27139486 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
27139533 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
27139582 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
27139629 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
27139676 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
27139723 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27139758 TCCCGAAGGG
Statistics
Matches: 491, Mismatches: 13, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 396 0.81
49 94 0.19
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:27139277 original size:25 final size:25
Alignment explanation
Indices: 27139249--27139327 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
27139239 CTAATGGCCG
27139249 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
27139274 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
27139296 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
27139321 ATGTGAT
1 ATGTGAT
27139328 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:27139388 original size:143 final size:141
Alignment explanation
Indices: 27139202--27139757 Score: 961
Period size: 143 Copynumber: 3.9 Consensus size: 141
27139192 TTAGGATTCT
* * *
27139202 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
27139266 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27139331 GCCTAATGGCCG
130 GCCTAATGGCCG
27139343 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27139408 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27139473 GGCCTAATGGCCG
129 GGCCTAATGGCCG
27139486 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
27139551 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27139616 GGCCTAATGGCCG
129 GGCCTAATGGCCG
27139629 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * * *
27139694 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27139758 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 11, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
140 1 0.00
141 118 0.30
143 280 0.70
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCG
Found at i:27139485 original size:190 final size:190
Alignment explanation
Indices: 27139202--27139757 Score: 992
Period size: 190 Copynumber: 2.9 Consensus size: 190
27139192 TTAGGATTCT
* * *
27139202 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
27139266 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27139331 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
130 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
27139392 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
27139457 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
27139522 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
131 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
27139582 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
27139647 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * * * *
27139712 CCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
131 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
27139758 TCCCGAAGGG
Statistics
Matches: 355, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
188 10 0.03
189 2 0.01
190 343 0.97
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:27139932 original size:37 final size:37
Alignment explanation
Indices: 27139876--27139954 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27139866 CCGAGCTCTA
* * *
27139876 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27139913 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27139950 AAGAC
1 AAGAC
27139955 TTCATAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27142060 original size:9 final size:9
Alignment explanation
Indices: 27142046--27142071 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
27142036 AAATAGGGTT
27142046 TTTTAAGGA
1 TTTTAAGGA
27142055 TTTTAAGGA
1 TTTTAAGGA
27142064 TTTTAAGG
1 TTTTAAGG
27142072 GTTTAGGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (9 bp):
TTTTAAGGA
Found at i:27144879 original size:40 final size:40
Alignment explanation
Indices: 27144815--27144986 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
27144805 GTCTGCAAAT
* * *
27144815 CTGGTGACTTGTCCACAATATTGGCAGTTTATCTCCGTTA
1 CTGGTGGCTTGTCCACATTATTGGCAGTTTATCTCCATTA
* * *
27144855 CTAGTGGCTTGTCCACATTTTTGGCAGTTTATCTACATTA
1 CTGGTGGCTTGTCCACATTATTGGCAGTTTATCTCCATTA
* * * *
27144895 CTGGTGGCTTGTCCACATTATTAGCAGCTTGTCTGCAATT-
1 CTGGTGGCTTGTCCACATTATTGGCAGTTTATCT-CCATTA
* *
27144935 CTGGTGGTTTGTCCACATTTTTGGCAGTTTATCTCCATTA
1 CTGGTGGCTTGTCCACATTATTGGCAGTTTATCTCCATTA
27144975 CTGGTGGCTTGT
1 CTGGTGGCTTGT
27144987 TCGCAAAATA
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 4 0.04
40 103 0.94
41 3 0.03
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (40 bp):
CTGGTGGCTTGTCCACATTATTGGCAGTTTATCTCCATTA
Found at i:27144912 original size:20 final size:20
Alignment explanation
Indices: 27144852--27144953 Score: 55
Period size: 20 Copynumber: 5.1 Consensus size: 20
27144842 TTTATCTCCG
*
27144852 TTACTAGTGGCTTGTCCACA
1 TTACTGGTGGCTTGTCCACA
** ** * * *
27144872 TTTTTGGCAGTTTATCTACA
1 TTACTGGTGGCTTGTCCACA
27144892 TTACTGGTGGCTTGTCCACA
1 TTACTGGTGGCTTGTCCACA
* * **
27144912 TTATTAGCAGCTTGTCTGCA-A
1 TTACTGGTGGCTTGTC--CACA
*
27144933 TT-CTGGTGGTTTGTCCACA
1 TTACTGGTGGCTTGTCCACA
27144952 TT
1 TT
27144954 TTTGGCAGTT
Statistics
Matches: 55, Mismatches: 24, Indels: 7
0.64 0.28 0.08
Matches are distributed among these distances:
18 2 0.04
19 3 0.05
20 45 0.82
21 3 0.05
22 2 0.04
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.41
Consensus pattern (20 bp):
TTACTGGTGGCTTGTCCACA
Found at i:27144964 original size:20 final size:20
Alignment explanation
Indices: 27144863--27144964 Score: 60
Period size: 20 Copynumber: 5.1 Consensus size: 20
27144853 TACTAGTGGC
27144863 TTGTCCACATTTTTGGCAGT
1 TTGTCCACATTTTTGGCAGT
* * ** ** *
27144883 TTATCTACATTACTGGTGGC
1 TTGTCCACATTTTTGGCAGT
* * *
27144903 TTGTCCACATTATTAGCAGC
1 TTGTCCACATTTTTGGCAGT
** * * **
27144923 TTGTCTGCAATTCTGGTGGT
1 TTGTCCACATTTTTGGCAGT
27144943 TTGTCCACATTTTTGGCAGT
1 TTGTCCACATTTTTGGCAGT
27144963 TT
1 TT
27144965 ATCTCCATTA
Statistics
Matches: 54, Mismatches: 28, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.43
Consensus pattern (20 bp):
TTGTCCACATTTTTGGCAGT
Found at i:27153624 original size:29 final size:29
Alignment explanation
Indices: 27153580--27153645 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
27153570 ATTTGACCTT
* *
27153580 ATTGATTCTTTTTAATAATATAGAGACTAA
1 ATTGA-TCTATTTAATAATAGAGAGACTAA
*
27153610 ATTGATCTATTTAATAATAGAGGGACTAA
1 ATTGATCTATTTAATAATAGAGAGACTAA
*
27153639 TTTGATC
1 ATTGATC
27153646 CGGTCTCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (29 bp):
ATTGATCTATTTAATAATAGAGAGACTAA
Found at i:27163843 original size:20 final size:20
Alignment explanation
Indices: 27163809--27163861 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
27163799 AAGCCCCATG
**
27163809 GTATCGATA-TTTTACACGA
1 GTATCGATATTTTTACAAAA
27163828 GTATCGATATTTTTACAAAA
1 GTATCGATATTTTTACAAAA
*
27163848 GTACCGATATTTTT
1 GTATCGATATTTTT
27163862 TAGTTGGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 9 0.30
20 21 0.70
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (20 bp):
GTATCGATATTTTTACAAAA
Found at i:27171397 original size:13 final size:12
Alignment explanation
Indices: 27171367--27171422 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
27171357 AATGTGAAAC
*
27171367 AAAAAGAAATTG
1 AAAAAGAAGTTG
27171379 AAAAAGAAGTTG
1 AAAAAGAAGTTG
*
27171391 AAGAAAGAAG-AG
1 AA-AAAGAAGTTG
*
27171403 AAAATG-AGTTAG
1 AAAAAGAAGTT-G
27171415 AAAAAGAA
1 AAAAAGAA
27171423 ACAAAAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 22 0.63
13 8 0.23
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.12
Consensus pattern (12 bp):
AAAAAGAAGTTG
Found at i:27188325 original size:26 final size:25
Alignment explanation
Indices: 27188259--27188325 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 25
27188249 CCTTTTCATA
*
27188259 TATGCTCACATGAGCTGTGAATAAG
1 TATGCTCACACGAGCTGTGAATAAG
* *
27188284 TATGCCCACACGAGCTGTGAAATGAG
1 TATGCTCACACGAGCTGTG-AATAAG
*
27188310 TCTGCTCACACGAGCT
1 TATGCTCACACGAGCT
27188326 TTGGTTCGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 17 0.47
26 19 0.53
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTGAATAAG
Found at i:27201635 original size:12 final size:12
Alignment explanation
Indices: 27201618--27201645 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
27201608 TTTTTCTAAC
27201618 TTTTTATAAATT
1 TTTTTATAAATT
27201630 TTTTTATAAATT
1 TTTTTATAAATT
27201642 TTTT
1 TTTT
27201646 GAATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTATAAATT
Found at i:27207329 original size:35 final size:35
Alignment explanation
Indices: 27207283--27207354 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
27207273 CAGCGAAGCC
27207283 AAAAACAATACCCAAGATGATGGCATTAACTGACT
1 AAAAACAATACCCAAGATGATGGCATTAACTGACT
*
27207318 AAAAACAATACCCAAGATGATGGCGTTAACTGACT
1 AAAAACAATACCCAAGATGATGGCATTAACTGACT
27207353 AA
1 AA
27207355 GGGTGTTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.19
Consensus pattern (35 bp):
AAAAACAATACCCAAGATGATGGCATTAACTGACT
Found at i:27208158 original size:66 final size:65
Alignment explanation
Indices: 27208069--27208235 Score: 185
Period size: 66 Copynumber: 2.6 Consensus size: 65
27208059 ATCCATGTTA
* * * * *
27208069 AAAAAGAAATGGTGTGGCT-AATTCACTAGGGAAGTTCATTCGTTACACCAAGATTAATTCATGC
1 AAAAAGAAATGGTGTAG-TGAATTCACTAAGGAAGTTCATCCGCTACACCAAGATTAATCCATGC
27208133 C
65 C
* * *
27208134 AAACAAGAAATGGTGTAGTGAATTCACAAAGGAAGTTCATCCGCTACATCAGGATTAATCCATGC
1 AAA-AAGAAATGGTGTAGTGAATTCACTAAGGAAGTTCATCCGCTACACCAAGATTAATCCATGC
27208199 C
65 C
* * * *
27208200 AAAAA-AAAGTGATGTAGCGAATTTACTAAAGAAGTT
1 AAAAAGAAA-TGGTGTAGTGAATTCACTAAGGAAGTT
27208236 AATATGATAA
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
64 3 0.03
65 28 0.33
66 55 0.64
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.25
Consensus pattern (65 bp):
AAAAAGAAATGGTGTAGTGAATTCACTAAGGAAGTTCATCCGCTACACCAAGATTAATCCATGCC
Found at i:27208388 original size:127 final size:127
Alignment explanation
Indices: 27208149--27208396 Score: 277
Period size: 127 Copynumber: 2.0 Consensus size: 127
27208139 AGAAATGGTG
** *
27208149 TAGTGAATTCACAAAGGAAGTTCATCCGCTACATCAGGATTAATCCATGCCAAAAAAAAGTGATG
1 TAGTGAATTCACAAAGGAAGCCCATCCGCTACATCAGGATTAATCCATGCCAAAAAAAAGCGATG
* * * *
27208214 TAGCGAATTTACTAAAGAAGTTAATATGATAAACTAGAGTGATCCATGTTAAAGAAACGATA
66 TAGCAAATTTACTAAAGAAGTTAATACGATAAACTAGAGTGAACCATGTAAAAGAAACGATA
* * * *
27208276 TAGTGAATTCACTAAGGAAGCCCATCCGTTACAT-TGGTATTAATCTATGCCAAAGAAGAAA-CG
1 TAGTGAATTCACAAAGGAAGCCCATCCGCTACATCAGG-ATTAATCCATGCCAAA-AA-AAAGCG
** * * * * * *
27208339 ATGTAGCAAATTTACTATGGACGTTCATCCGATACA-TCGGGTGAACCATGTAAAAGAA
63 ATGTAGCAAATTTACTAAAGAAGTTAATACGATAAACTAGAGTGAACCATGTAAAAGAA
27208397 GAAATGGTGT
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
126 2 0.02
127 63 0.64
128 31 0.31
129 3 0.03
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (127 bp):
TAGTGAATTCACAAAGGAAGCCCATCCGCTACATCAGGATTAATCCATGCCAAAAAAAAGCGATG
TAGCAAATTTACTAAAGAAGTTAATACGATAAACTAGAGTGAACCATGTAAAAGAAACGATA
Found at i:27211357 original size:22 final size:22
Alignment explanation
Indices: 27211320--27211362 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
27211310 TTATCAAGAT
27211320 AAATATTAGATTAAATTTAATATA
1 AAATATTA-ATTAAA-TTAATATA
27211344 AAATATT-ATTAAATTAATA
1 AAATATTAATTAAATTAATA
27211363 GAATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
24 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATATTAATTAAATTAATATA
Found at i:27211399 original size:62 final size:59
Alignment explanation
Indices: 27211291--27211404 Score: 165
Period size: 62 Copynumber: 1.9 Consensus size: 59
27211281 ATCACTTTAA
* * *
27211291 TATTAAATTAATATAATAGTTATCAAGATAAATATTAGATTAAATTTAATATAAAATAT
1 TATTAAATTAATAGAATAGTTATCAAGATAAACATTAAATTAAATTTAATATAAAATAT
*
27211350 TATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATAT
1 TATTAAATTAATAGAATAGTTA--T-CAAGATAAACATTAAATTAAATTTAATAT
27211405 TAAGACAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
59 20 0.42
61 1 0.02
62 27 0.56
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (59 bp):
TATTAAATTAATAGAATAGTTATCAAGATAAACATTAAATTAAATTTAATATAAAATAT
Found at i:27211446 original size:25 final size:26
Alignment explanation
Indices: 27211398--27211458 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
27211388 TAAATTAAAT
*
27211398 TTAATATTAAGACAATTACTTTAACA
1 TTAATATTAAGACAAATACTTTAACA
*
27211424 TTAA-ATTAAGA-AAATACTATTAAGA
1 TTAATATTAAGACAAATACT-TTAACA
*
27211449 TAAATATTAA
1 TTAATATTAA
27211459 ATTTAATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 6 0.20
25 15 0.50
26 9 0.30
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (26 bp):
TTAATATTAAGACAAATACTTTAACA
Found at i:27212129 original size:208 final size:208
Alignment explanation
Indices: 27211771--27212186 Score: 796
Period size: 208 Copynumber: 2.0 Consensus size: 208
27211761 ATTTTGGGCT
* *
27211771 TCCAAGCCCAATTTACGATTGCAAGTCCAATCTTCAAGTTCAATTATCCATTGGGACAATTTTCT
1 TCCAAGCCCAATTTACGATCGCAAGTCCAATCTTCAAGTTCAATTATCCATTGAGACAATTTTCT
27211836 AACTTGAAAATTAATTTCTGAAAATATCATATTAATTTTAATGAATTTAATTTTACTTGATAAAA
66 AACTTGAAAATTAATTTCTGAAAATATCATATTAATTTTAATGAATTTAATTTTACTTGATAAAA
*
27211901 ATTAATTTTTCCAAAAATCACTTAGATTTTCCAAATTAATATTTCAAGAAACTTCTTTAATCAAA
131 ATTAATTTTCCCAAAAATCACTTAGATTTTCCAAATTAATATTTCAAGAAACTTCTTTAATCAAA
27211966 TTCTCTAGTTGAA
196 TTCTCTAGTTGAA
27211979 TCCAAGCCCAATTTACGATCGCAAGTCCAATCTTCAAGTTCAATTATCCATTGAGACAATTTTCT
1 TCCAAGCCCAATTTACGATCGCAAGTCCAATCTTCAAGTTCAATTATCCATTGAGACAATTTTCT
*
27212044 AACTTGAAAATTAATTTCTGAAAATATCATATTAATTTTAATGAATTTAATTTTACTTGATCAAA
66 AACTTGAAAATTAATTTCTGAAAATATCATATTAATTTTAATGAATTTAATTTTACTTGATAAAA
27212109 ATTAATTTTCCCAAAAATCACTTAGATTTTCCAAATTAATATTTCAAGAAACTTCTTTAATCAAA
131 ATTAATTTTCCCAAAAATCACTTAGATTTTCCAAATTAATATTTCAAGAAACTTCTTTAATCAAA
27212174 TTCTCTAGTTGAA
196 TTCTCTAGTTGAA
27212187 CATTTATTAC
Statistics
Matches: 204, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
208 204 1.00
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (208 bp):
TCCAAGCCCAATTTACGATCGCAAGTCCAATCTTCAAGTTCAATTATCCATTGAGACAATTTTCT
AACTTGAAAATTAATTTCTGAAAATATCATATTAATTTTAATGAATTTAATTTTACTTGATAAAA
ATTAATTTTCCCAAAAATCACTTAGATTTTCCAAATTAATATTTCAAGAAACTTCTTTAATCAAA
TTCTCTAGTTGAA
Found at i:27213279 original size:7 final size:8
Alignment explanation
Indices: 27213258--27213287 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
27213248 AATATGAAAG
27213258 ACAAAAAT
1 ACAAAAAT
27213266 ACAAAAAT
1 ACAAAAAT
27213274 ACAAAAAT
1 ACAAAAAT
27213282 ACAAAA
1 ACAAAA
27213288 GACATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (8 bp):
ACAAAAAT
Found at i:27218062 original size:3 final size:3
Alignment explanation
Indices: 27218054--27218117 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
27218044 AATTACTTGG
27218054 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
27218102 TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC T
27218118 ATTCAATATC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:27225940 original size:62 final size:62
Alignment explanation
Indices: 27225807--27226085 Score: 513
Period size: 62 Copynumber: 4.5 Consensus size: 62
27225797 AAAGTAGTAG
* *
27225807 TAAGCAGATAAGGAGGAATCTGCTTTTTCAAACATAAAGGACATGACTCATACATAAGGGACA
1 TAAGCAGATAAGGAGGAATCTGCTTTTACAAACAT-AAGGACATGACTCATACATAAAGGACA
27225870 TAAGCAGATAAGGAGGAATCTGCTTTTACAAACATAAGGACATGACTCATACATAAAGGACA
1 TAAGCAGATAAGGAGGAATCTGCTTTTACAAACATAAGGACATGACTCATACATAAAGGACA
*
27225932 TAAGCAGATAAGGAGGAATATGCTTTTACAAACATAAGGACATGACTCATACATAAAGGACA
1 TAAGCAGATAAGGAGGAATCTGCTTTTACAAACATAAGGACATGACTCATACATAAAGGACA
27225994 TAAGCAGATAAGGAGGAATCTGCTTTTACAAACATAAGGACATGACTCATACATAAAGGACA
1 TAAGCAGATAAGGAGGAATCTGCTTTTACAAACATAAGGACATGACTCATACATAAAGGACA
*
27226056 TAAGCAGATAATGAGGAATCTGCTTTTACA
1 TAAGCAGATAAGGAGGAATCTGCTTTTACA
27226086 TTAATTTATC
Statistics
Matches: 211, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
62 177 0.84
63 34 0.16
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (62 bp):
TAAGCAGATAAGGAGGAATCTGCTTTTACAAACATAAGGACATGACTCATACATAAAGGACA
Found at i:27232606 original size:40 final size:40
Alignment explanation
Indices: 27232513--27232722 Score: 295
Period size: 39 Copynumber: 5.3 Consensus size: 40
27232503 GCTCCTCGTT
* * * * *
27232513 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
27232553 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
27232592 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
27232632 CAAAGGCCTTCGGG-CTTAACCCGGATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
27232670 CAAATGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
27232709 CAAATGCCTTCGGG
1 CAAATGCCTTCGGG
27232723 TGTATCTCGC
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 33 0.21
39 76 0.48
40 49 0.31
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:27232616 original size:79 final size:78
Alignment explanation
Indices: 27232513--27232722 Score: 291
Period size: 79 Copynumber: 2.7 Consensus size: 78
27232503 GCTCCTCGTT
* * * * *
27232513 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGG-CTTAACCCGG
27232577 ATTTAATAACTCGCA
65 ATTT-ATAACTCGCA
* *
27232592 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGGCTTAACCCGGA
* *
27232657 TTTGTATCTCGCA
66 TTTATAACTCGCA
27232670 CAAATGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGGG
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCACAAATGCCTTCGGG
27232723 TGTATCTCGC
Statistics
Matches: 118, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
77 33 0.28
78 25 0.21
79 49 0.42
80 11 0.09
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGGCTTAACCCGGA
TTTATAACTCGCA
Found at i:27232732 original size:25 final size:25
Alignment explanation
Indices: 27232698--27232746 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
27232688 ACCCGGAATT
27232698 TGTATCTCGCACAAATGCCTTCGGG
1 TGTATCTCGCACAAATGCCTTCGGG
27232723 TGTATCTCGCACAAATGCCTTCGG
1 TGTATCTCGCACAAATGCCTTCGG
27232747 ATCTTAGTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (25 bp):
TGTATCTCGCACAAATGCCTTCGGG
Found at i:27232808 original size:41 final size:41
Alignment explanation
Indices: 27232731--27232808 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
27232721 GGTGTATCTC
* * *
27232731 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
27232772 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
27232809 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:27240153 original size:39 final size:40
Alignment explanation
Indices: 27240108--27240406 Score: 323
Period size: 40 Copynumber: 7.7 Consensus size: 40
27240098 GCTCCTCGTT
* * * *
27240108 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
27240148 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
27240187 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
27240227 CAAATGCCTTCGGG-CTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
27240265 C-AATGCCTTCGGG-CTTAACCCGGAATTTA-T--CTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
* *
27240301 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
27240341 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
27240382 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
27240407 CAGCATTCAA
Statistics
Matches: 228, Mismatches: 19, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
36 7 0.03
37 34 0.15
38 31 0.14
39 52 0.23
40 93 0.41
41 11 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:27240320 original size:114 final size:118
Alignment explanation
Indices: 27240108--27240353 Score: 351
Period size: 114 Copynumber: 2.1 Consensus size: 118
27240098 GCTCCTCGTT
* **
27240108 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
*
27240173 TTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
66 TTTAAT-ACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTT-GTATCTCGCA
* * *
27240227 CAAATGCCTTCGGG-CTTAACCCGGAATT-GTATCTCGCACAATGCCTTCGGG-CTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAATGCCTTCGGGACTTAACCCGG-
*
27240289 ATTT-AT-CTCGCACAAATGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
65 ATTTAATACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTTGTATCTCGCA
27240341 CAAATGCCTTCGG
1 CAAATGCCTTCGG
27240354 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
114 52 0.44
115 4 0.03
116 12 0.10
117 25 0.21
118 10 0.09
119 14 0.12
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTTGTATCTCGCA
Found at i:27240415 original size:41 final size:41
Alignment explanation
Indices: 27240338--27240415 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
27240328 TTTGTATCTC
* * *
27240338 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
27240379 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
27240416 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:27247655 original size:16 final size:16
Alignment explanation
Indices: 27247634--27247669 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
27247624 TTTTACATAA
*
27247634 ATATAAATATTTGTTT
1 ATATAAATATTTGCTT
27247650 ATATAAATATTTGCTT
1 ATATAAATATTTGCTT
27247666 ATAT
1 ATAT
27247670 TAATTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
ATATAAATATTTGCTT
Found at i:27247700 original size:16 final size:16
Alignment explanation
Indices: 27247679--27247709 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27247669 TTAATTTGTT
27247679 TTATTTATATATATAA
1 TTATTTATATATATAA
*
27247695 TTATTTATATTTATA
1 TTATTTATATATATA
27247710 TTGTTCACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTTATATATATAA
Found at i:27247957 original size:82 final size:84
Alignment explanation
Indices: 27247845--27248212 Score: 329
Period size: 82 Copynumber: 4.4 Consensus size: 84
27247835 AAATAAAATC
* * *
27247845 TGTTTCGGGATTTATTCCTGCCATTCAACAGATTTTATTC-ATTTTTTGA-TTTGTTCCCAAATA
1 TGTTTCGGGATTTATTCCCGCCATTCAACAGATTTTATTCGATTTTTTGATTTTGTTTCCAAACA
27247908 AGAATTAAATTGAATAA-TA
66 AGAATT-AATTGAATAATTA
* * *
27247927 TGTTTCGGGATTTATTCCCGTCGTTTAACAGATTTTATT---TTATTTTGATTTTGTTTCCAAAC
1 TGTTTCGGGATTTATTCCCGCCATTCAACAGATTTTATTCGATT-TTTTGATTTTGTTTCCAAAC
** * *
27247989 GTGAAATAATTGAATAATTC
65 AAGAATTAATTGAATAATTA
* * * * *
27248009 TATTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTCGA--TTGTGATTTTGTTTCTAAACA
1 TGTTTCGGGATTTATTCCCGCCATTCAACAGATTTTATTCGATTTTTTGATTTTGTTTCCAAACA
* * *
27248072 ATGATTTAATTAAATAATTT
66 A-GAATTAATTGAATAATTA
* * * * * *
27248092 TGTTTCGGGATTTATTCCCACCGTTTAACATATTTAATTCGATTTTGATTTTGATTTTGTTTGCA
1 TGTTTCGGGATTTATTCCCGCCATTCAACAGATTTTATTCGA--TT--TTTTGATTTTGTTTCCA
* * *
27248157 AACGAAGATTTAATTAAATAATTT
62 AAC-AAGAATTAATTGAATAATTA
* * * *
27248181 TTTTTCGGGATTTAATCCTGCCGTTCAACAGA
1 TGTTTCGGGATTTATTCCCGCCATTCAACAGA
27248213 ATTGATTTTG
Statistics
Matches: 231, Mismatches: 41, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
80 2 0.01
81 16 0.07
82 102 0.44
83 48 0.21
89 61 0.26
90 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (84 bp):
TGTTTCGGGATTTATTCCCGCCATTCAACAGATTTTATTCGATTTTTTGATTTTGTTTCCAAACA
AGAATTAATTGAATAATTA
Found at i:27248047 original size:164 final size:165
Alignment explanation
Indices: 27247847--27248144 Score: 397
Period size: 164 Copynumber: 1.8 Consensus size: 165
27247837 ATAAAATCTG
* * * * *
27247847 TTTCGGGATTTATTCCTGCCATTCAACAGATTTTATTC-ATTTTTTGA-TTTGTTCCCAAATAA-
1 TTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTCGA--TTGTGATTTTGTTCCCAAACAAT
* ** * **
27247909 GAATTAAATTGAATAA-TATGTTTCGGGATTTATTCCCGTCGTTTAACAGATTTTATTTTATTTT
64 G-ATTAAATTAAATAATTATGTTTCGGGATTTATTCCCACCGTTTAACAGATTTAATTCGATTTT
27247973 GATTTTGTTTCCAAACGTGAAATAATTGAATAATTCTA
128 GATTTTGTTTCCAAACGTGAAATAATTGAATAATTCTA
* *
27248011 TTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTCGATTGTGATTTTGTTTCTAAACAATGA
1 TTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTCGATTGTGATTTTGTTCCCAAACAATGA
* * *
27248076 TTTAATTAAATAATTTTGTTTCGGGATTTATTCCCACCGTTTAACATATTTAATTCGATTTTGAT
66 TTAAATTAAATAATTATGTTTCGGGATTTATTCCCACCGTTTAACAGATTTAATTCGATTTTGAT
27248141 TTTG
131 TTTG
27248145 ATTTTGTTTG
Statistics
Matches: 114, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
163 5 0.04
164 59 0.52
165 50 0.44
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.46
Consensus pattern (165 bp):
TTTCAGGATTCATTCCCGCCATTCAACAGATTTTATTCGATTGTGATTTTGTTCCCAAACAATGA
TTAAATTAAATAATTATGTTTCGGGATTTATTCCCACCGTTTAACAGATTTAATTCGATTTTGAT
TTTGTTTCCAAACGTGAAATAATTGAATAATTCTA
Found at i:27253279 original size:16 final size:16
Alignment explanation
Indices: 27253258--27253314 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
27253248 TTTTACATAA
27253258 ATATAAATATTTTTTT
1 ATATAAATATTTTTTT
**
27253274 ATATAAATATTTACTT
1 ATATAAATATTTTTTT
* *
27253290 ATATTAAT-TTATTTT
1 ATATAAATATTTTTTT
*
27253305 ATATATATAT
1 ATATAAATAT
27253315 AATTATATTT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 10 0.31
16 22 0.69
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
ATATAAATATTTTTTT
Found at i:27253315 original size:6 final size:6
Alignment explanation
Indices: 27253288--27253356 Score: 90
Period size: 6 Copynumber: 11.7 Consensus size: 6
27253278 AAATATTTAC
*
27253288 TTATA- TTA-AT TTAT-T TTATAT ATATATAA TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT -T-TATAT TTATAT TTATAT TTATAT
27253335 TTATAT TTATAT TTATAT TTAT
1 TTATAT TTATAT TTATAT TTAT
27253357 TTGCTAACAT
Statistics
Matches: 57, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
4 1 0.02
5 11 0.19
6 39 0.68
7 2 0.04
8 4 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
TTATAT
Found at i:27254783 original size:9 final size:9
Alignment explanation
Indices: 27254769--27254832 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
27254759 GAAATTATAA
27254769 AAAAATTAT
1 AAAAATTAT
*
27254778 AAAAATTACA
1 AAAAATTA-T
*
27254788 AAGAAATCAT
1 AA-AAATTAT
*
27254798 TAAAATTAT
1 AAAAATTAT
27254807 -AAAATTAT
1 AAAAATTAT
*
27254815 TAAAATT-T
1 AAAAATTAT
27254823 ATAAAATTAT
1 A-AAAATTAT
27254833 TAGAAAGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
8 9 0.20
9 26 0.59
10 4 0.09
11 5 0.11
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:27254785 original size:20 final size:20
Alignment explanation
Indices: 27254760--27254810 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
27254750 GTTTATTATG
*
27254760 AAATTATAAAAAAATTATAA
1 AAATTATAAAAAAATCATAA
* * *
27254780 AAATTACAAAGAAATCATTA
1 AAATTATAAAAAAATCATAA
27254800 AAATTATAAAA
1 AAATTATAAAA
27254811 TTATTAAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (20 bp):
AAATTATAAAAAAATCATAA
Found at i:27254811 original size:8 final size:8
Alignment explanation
Indices: 27254798--27254832 Score: 52
Period size: 8 Copynumber: 4.1 Consensus size: 8
27254788 AAGAAATCAT
27254798 TAAAATTA
1 TAAAATTA
27254806 TAAAATTA
1 TAAAATTA
27254814 TTAAAATTTA
1 -TAAAA-TTA
27254824 TAAAATTA
1 TAAAATTA
27254832 T
1 T
27254833 TAGAAAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 12 0.48
9 10 0.40
10 3 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
TAAAATTA
Found at i:27254826 original size:18 final size:17
Alignment explanation
Indices: 27254791--27254834 Score: 70
Period size: 18 Copynumber: 2.5 Consensus size: 17
27254781 AATTACAAAG
*
27254791 AAATCATTAAAATTATA
1 AAATTATTAAAATTATA
27254808 AAATTATTAAAATTTATA
1 AAATTATTAAAA-TTATA
27254826 AAATTATTA
1 AAATTATTA
27254835 GAAAGTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATTATTAAAATTATA
Found at i:27256951 original size:22 final size:22
Alignment explanation
Indices: 27256925--27256969 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
27256915 ATTATATGTA
27256925 TTAATTCATAATACAA-TTAATT
1 TTAATTCAT-ATACAATTTAATT
* *
27256947 TTAATTTATATCCAATTTAATT
1 TTAATTCATATACAATTTAATT
27256969 T
1 T
27256970 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTCATATACAATTTAATT
Found at i:27258906 original size:20 final size:21
Alignment explanation
Indices: 27258859--27258909 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
27258849 ATAAAGTTTT
27258859 GGTATCGATAAAATTTTAATA
1 GGTATCGATAAAATTTTAATA
* * *
27258880 AGTATCGATATAATTTTCA-A
1 GGTATCGATAAAATTTTAATA
27258900 GGTATCGATA
1 GGTATCGATA
27258910 CTTATTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (21 bp):
GGTATCGATAAAATTTTAATA
Found at i:27263801 original size:18 final size:18
Alignment explanation
Indices: 27263770--27263806 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27263760 ACAAACAAAA
* *
27263770 ATAAACACAGAAATAAAC
1 ATAAAAACAAAAATAAAC
27263788 ATAAAAACAAAAATAAAC
1 ATAAAAACAAAAATAAAC
27263806 A
1 A
27263807 CACATAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.73, C:0.14, G:0.03, T:0.11
Consensus pattern (18 bp):
ATAAAAACAAAAATAAAC
Found at i:27269508 original size:46 final size:46
Alignment explanation
Indices: 27269441--27269625 Score: 316
Period size: 46 Copynumber: 4.0 Consensus size: 46
27269431 CATGGCAAAG
27269441 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
27269487 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
27269533 TATGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* * * *
27269579 TGTGAAAAGTAGGTATGATATTTCTGTGAAGAAAGCCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
27269625 T
1 T
27269626 ATAGCAATGT
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:27271688 original size:29 final size:29
Alignment explanation
Indices: 27271651--27271759 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 29
27271641 CAATCAGAGA
*
27271651 TAGATAGCCAGTAAGGCATCCACAGATAG
1 TAGATAGCCAGTAAGACATCCACAGATAG
* * * *
27271680 TAGATAGCCAATAAGGCATCCATAGATAA
1 TAGATAGCCAGTAAGACATCCACAGATAG
** ** *
27271709 TAGATAGTAAGTAAGATGTCCACGGAT-G
1 TAGATAGCCAGTAAGACATCCACAGATAG
*
27271737 ATAGATAGCTAGTAAGACATCCA
1 -TAGATAGCCAGTAAGACATCCA
27271760 TTCACAAATA
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (29 bp):
TAGATAGCCAGTAAGACATCCACAGATAG
Found at i:27271974 original size:26 final size:26
Alignment explanation
Indices: 27271945--27272030 Score: 91
Period size: 26 Copynumber: 3.3 Consensus size: 26
27271935 GCCACAGAGG
*
27271945 CTCTTTAATAGAATTAGCTAAAAAAA
1 CTCTTTAATAGAATTAGCCAAAAAAA
* * **
27271971 CTCTTTAATAGGATTAGCCAGAAAGG
1 CTCTTTAATAGAATTAGCCAAAAAAA
* * **
27271997 CTCTTTAATAGAATAAGCCACAAAGG
1 CTCTTTAATAGAATTAGCCAAAAAAA
27272023 CTCTTTAA
1 CTCTTTAA
27272031 CAGGAAATGG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (26 bp):
CTCTTTAATAGAATTAGCCAAAAAAA
Found at i:27272027 original size:52 final size:52
Alignment explanation
Indices: 27271932--27272035 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
27271922 TATAACATAG
* * * *
27271932 TTAGCCACAGAGGCTCTTTAATAGAATTAGCTAAAAAAACTCTTTAATAGGA
1 TTAGCCACAAAGGCTCTTTAATAGAATAAGCCAAAAAAACTCTTTAACAGGA
* * **
27271984 TTAGCCAGAAAGGCTCTTTAATAGAATAAGCCACAAAGGCTCTTTAACAGGA
1 TTAGCCACAAAGGCTCTTTAATAGAATAAGCCAAAAAAACTCTTTAACAGGA
27272036 AATGGTGTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (52 bp):
TTAGCCACAAAGGCTCTTTAATAGAATAAGCCAAAAAAACTCTTTAACAGGA
Found at i:27275180 original size:26 final size:26
Alignment explanation
Indices: 27275128--27275195 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
27275118 ATACTATTTC
* *
27275128 CTATTAAATAGCCTTTGTGGCTAATT
1 CTATCAAAAAGCCTTTGTGGCTAATT
* * * * *
27275154 CTGTCAAAGAGCCTTTGTTGTTGATT
1 CTATCAAAAAGCCTTTGTGGCTAATT
*
27275180 CTATTAAAAAGCCTTT
1 CTATCAAAAAGCCTTT
27275196 ATGACTAACT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (26 bp):
CTATCAAAAAGCCTTTGTGGCTAATT
Found at i:27286573 original size:34 final size:35
Alignment explanation
Indices: 27286529--27286595 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
27286519 CAGTAAAATA
27286529 TTTTCCGTAAAATGATTT-C-GGAAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGG-AAAATATTTTAC
*
27286563 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
27286596 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 17 0.57
35 11 0.37
36 2 0.07
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:27289263 original size:56 final size:50
Alignment explanation
Indices: 27289191--27289374 Score: 185
Period size: 50 Copynumber: 3.6 Consensus size: 50
27289181 AGTTGGGTAA
*
27289191 AGAGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCATTGAAGTTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-C--CG-A--TATG
* * * *
27289247 AGAGGTCCCATGTAAGATCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGATATG
* * *
27289297 AGA-ACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCG-ATATG
* *
27289346 AAACATCCCATGTAAGACCATGTCTGGGA
1 AGAGATCCCATGTAAGACCATGTCTGGGA
27289375 CATGAATTTG
Statistics
Matches: 111, Mismatches: 14, Indels: 13
0.80 0.10 0.09
Matches are distributed among these distances:
48 1 0.01
49 28 0.25
50 41 0.37
52 1 0.01
53 1 0.01
55 1 0.01
56 38 0.34
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGATATG
Found at i:27296330 original size:25 final size:25
Alignment explanation
Indices: 27296288--27296349 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
27296278 TATGTTCCAT
*
27296288 GAAAGTTCAGGTAAAAGCATAAATA
1 GAAATTTCAGGTAAAAGCATAAATA
27296313 GCAAATTT-AGGTAAAAGCATAAATA
1 G-AAATTTCAGGTAAAAGCATAAATA
27296338 GAAATTTCAGGT
1 GAAATTTCAGGT
27296350 GAGTTATAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
24 6 0.18
25 23 0.68
26 5 0.15
ACGTcount: A:0.48, C:0.08, G:0.19, T:0.24
Consensus pattern (25 bp):
GAAATTTCAGGTAAAAGCATAAATA
Found at i:27305227 original size:16 final size:17
Alignment explanation
Indices: 27305200--27305231 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
27305190 AGTATAGGGG
27305200 CAAAATAGTAATTTTTC
1 CAAAATAGTAATTTTTC
27305217 CAAAATA-TAATTTTT
1 CAAAATAGTAATTTTT
27305232 GTTAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (17 bp):
CAAAATAGTAATTTTTC
Found at i:27305735 original size:24 final size:24
Alignment explanation
Indices: 27305646--27305739 Score: 143
Period size: 24 Copynumber: 3.9 Consensus size: 24
27305636 TCCGACCCAC
* **
27305646 AGCTTGTGAGAGCATACCAATTAT
1 AGCTCGTGAGAGCATACTGATTAT
*
27305670 AGCTCGTGAGAGCATACAGATTAT
1 AGCTCGTGAGAGCATACTGATTAT
*
27305694 AGCTCATGAGAGCATACTGATTAT
1 AGCTCGTGAGAGCATACTGATTAT
27305718 AGCTCGTGAGAGCATACTGATT
1 AGCTCGTGAGAGCATACTGATT
27305740 TATGACTTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCTCGTGAGAGCATACTGATTAT
Found at i:27310816 original size:15 final size:15
Alignment explanation
Indices: 27310771--27310809 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
27310761 ATTGACAATG
27310771 TTCTCAGTAGATTCT
1 TTCTCAGTAGATTCT
* *
27310786 TTCTCAGCAGCTTCT
1 TTCTCAGTAGATTCT
27310801 TTCTCAGTA
1 TTCTCAGTA
27310810 TTTTCTTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.44
Consensus pattern (15 bp):
TTCTCAGTAGATTCT
Found at i:27315154 original size:17 final size:17
Alignment explanation
Indices: 27315124--27315160 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
27315114 ATGCACTAAC
* *
27315124 ATGAATATGTAATGACA
1 ATGAAAATGCAATGACA
27315141 ATGAAAATGCAATGACA
1 ATGAAAATGCAATGACA
27315158 ATG
1 ATG
27315161 TATACTTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.24
Consensus pattern (17 bp):
ATGAAAATGCAATGACA
Found at i:27326193 original size:21 final size:19
Alignment explanation
Indices: 27326143--27326206 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
27326133 AATCTTCAAG
*
27326143 GATATGTAATCTTAGATAT
1 GATATGAAATCTTAGATAT
27326162 GATATGAAATCTTAGATAT
1 GATATGAAATCTTAGATAT
*
27326181 GATATATGCAATCTTAGA-A-
1 G--ATATGAAATCTTAGATAT
27326200 GATATGA
1 GATATGA
27326207 TTTTGTAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
17 5 0.12
19 20 0.50
20 1 0.03
21 14 0.35
ACGTcount: A:0.41, C:0.06, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGAAATCTTAGATAT
Found at i:27327226 original size:22 final size:23
Alignment explanation
Indices: 27327192--27327235 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
27327182 TATTTATTAT
*
27327192 TTGTATTATTTA-TATGCCATTG
1 TTGTATTATTTATTATGACATTG
27327214 TTGTATT-TGTTATTATGACATT
1 TTGTATTAT-TTATTATGACATT
27327236 CATACATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 10 0.53
23 8 0.42
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.57
Consensus pattern (23 bp):
TTGTATTATTTATTATGACATTG
Found at i:27328973 original size:44 final size:43
Alignment explanation
Indices: 27328838--27328980 Score: 117
Period size: 44 Copynumber: 3.3 Consensus size: 43
27328828 AGACATCAAC
* *
27328838 CTTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAATAGTAGAT
* ***** * * * * * *
27328881 CTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGATACTAG-C
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGT-TAAAATAGTAGAT
27328925 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGTAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTT-AAAATAGTAGAT
*
27328969 CTTGCCTTCCTG
1 CTTGCCTCCCTG
27328981 CACCGAAAGC
Statistics
Matches: 69, Mismatches: 27, Indels: 7
0.67 0.26 0.07
Matches are distributed among these distances:
43 30 0.43
44 32 0.46
45 7 0.10
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (43 bp):
CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAATAGTAGAT
Found at i:27329004 original size:88 final size:88
Alignment explanation
Indices: 27328790--27329439 Score: 887
Period size: 88 Copynumber: 7.4 Consensus size: 88
27328780 TGAAGATAAT
* * * * * * *
27328790 AGATCTTTCCTTCCTGCATCGACAGTGAAGTAGATCGAAGACATCAACCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGAAAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
*
27328855 TAGCGGAGCAGGTT-AAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
* * * *
27328877 AGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGATACTAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGAAAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
*
27328942 CAGCGGAGCAGGTTAAAAATAGT
66 CAGCGGAGCAGGTTAAAAATAGC
* *
27328965 AGATCTTGCCTTCCTGCACCGAAAGCAAAGCAAATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGAAAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* * *
27329030 TAACAGAGCAGGTTAAAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
* * * * *
27329053 AGATTTTG-CTTGCCTGCACCGACAGCAAAGCAGATCGAAGACACCAACTTTGCCTCCCTGGGTT
1 AGATCTTGCCTT-CCTGCACCGAAAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
27329117 GTAGCGGAGCAGGTTAAAAATAGT
65 GCAGCGGAGCAGGTTAAAAATAGC
*
27329141 AGATCTTGCCTTCCTGCACC-AACAGCGAAGTAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
1 AGATCTTGCCTTCCTGCACCGAA-AGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
27329205 GCAGCAGAGCAGGTTAAAAATAGC
65 GCAGCGGAGCAGGTTAAAAATAGC
* * *
27329229 AGATCTTGCCTTCCTGCACCGACAA-CGAAGCAGATCGAAGACACCATCCTTGCCTCCTTAGGTT
1 AGATCTTGCCTTCCTGCACCGA-AAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
27329293 GCAGCGAAACAGGTTAAAAATAGC
65 GCAGCGGAGCAGGTTAAAAATAGC
* * *
27329317 AGATCTTGCCTTCGTGTACC-ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGAAAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
*
27329381 CAGCGAAGCAGGTTAAAAATAGC
66 CAGCGGAGCAGGTTAAAAATAGC
* * *
27329404 AGATCTTGCGTTCCTGCACCGACAGTGAAGCAGATC
1 AGATCTTGCCTTCCTGCACCGAAAGCGAAGCAGATC
27329440 AATGAACCCA
Statistics
Matches: 499, Mismatches: 56, Indels: 15
0.88 0.10 0.03
Matches are distributed among these distances:
86 1 0.00
87 150 0.30
88 342 0.69
89 5 0.01
90 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCACCGAAAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
CAGCGGAGCAGGTTAAAAATAGC
Found at i:27329948 original size:44 final size:44
Alignment explanation
Indices: 27329893--27330004 Score: 172
Period size: 44 Copynumber: 2.5 Consensus size: 44
27329883 GAAGATGGCG
*
27329893 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
*
27329936 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* *
27329981 GATCTTATCTCTCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
27330005 CAGAGTAGAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 61 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
Found at i:27330496 original size:21 final size:21
Alignment explanation
Indices: 27330448--27330523 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
27330438 ATCTTCAAGG
*
27330448 ATATGTAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
*
27330467 ATATCCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
27330488 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
27330509 TTATGCAATCTTAGA
1 ATATGCAATCTTAGA
27330524 AGATATGATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.33
21 34 0.67
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:27330545 original size:23 final size:24
Alignment explanation
Indices: 27330479--27330546 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 24
27330469 ATCCAATCTT
*
27330479 AGATATGATATATGCAATCTT---
1 AGATATGATTTATGCAATCTTAGA
27330500 AGATATGATTTATGCAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
*
27330524 AGATATGATTT-TGTAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
27330547 GATTTAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.48
23 11 0.26
24 11 0.26
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (24 bp):
AGATATGATTTATGCAATCTTAGA
Found at i:27337608 original size:44 final size:43
Alignment explanation
Indices: 27337473--27337615 Score: 117
Period size: 44 Copynumber: 3.3 Consensus size: 43
27337463 AGACATCAAC
* *
27337473 CTTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAATAGTAGAT
* ***** * * * * * *
27337516 CTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGATACTAG-C
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGT-TAAAATAGTAGAT
27337560 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGTAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTT-AAAATAGTAGAT
*
27337604 CTTGCCTTCCTG
1 CTTGCCTCCCTG
27337616 CACCGAAAGC
Statistics
Matches: 69, Mismatches: 27, Indels: 7
0.67 0.26 0.07
Matches are distributed among these distances:
43 30 0.43
44 32 0.46
45 7 0.10
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (43 bp):
CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAATAGTAGAT
Found at i:27338048 original size:44 final size:44
Alignment explanation
Indices: 27337824--27338048 Score: 104
Period size: 44 Copynumber: 5.1 Consensus size: 44
27337814 AGACACCAGC
*
27337824 CTTGCCTCCCTGGGTTGCAGC-AGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTCCAGCGA-AGCAGGTTAAAAATAGCAGAT
* *** * * ** * * *
27337868 CTTGCCTTCCT-GCACCGACAACGAAGCAGATCGAAGACA-C-CAT
1 CTTGCCTCCCTGGGTTC--CAGCGAAGCAGGTTAAAAATAGCAGAT
* * * *
27337911 CCTTGCCTCCTTAGGTTGCAGCGAAACAGGTTAAAAATAGCAGAT
1 -CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
* * * * ** * * * *
27337956 CTTGCCT-TC-GTGTACCGACAGCGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTGGGT-TC--CAGCGAAGCAGGTTAAAAATAGCAGAT
27338000 CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
27338044 CTTGC
1 CTTGC
27338049 GTTCCTGCAC
Statistics
Matches: 118, Mismatches: 50, Indels: 26
0.61 0.26 0.13
Matches are distributed among these distances:
42 2 0.02
43 36 0.31
44 40 0.34
45 36 0.31
46 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
Found at i:27338098 original size:88 final size:88
Alignment explanation
Indices: 27337425--27338075 Score: 914
Period size: 88 Copynumber: 7.4 Consensus size: 88
27337415 TGAAGATAAT
* * * * * *
27337425 AGATCTTTCCTTCCTGCATCGACAGTGAAGTAGATCGAAGACATCAACCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* *
27337490 TAGCGGAGCAGGTT-AAAATAGC
66 CAGCGAAGCAGGTTAAAAATAGC
* * *
27337512 AGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGATACTAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* *
27337577 CAGCGGAGCAGGTTAAAAATAGT
66 CAGCGAAGCAGGTTAAAAATAGC
* * *
27337600 AGATCTTGCCTTCCTGCACCGAAAGCAAAGCAAATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* *
27337665 TAAC-AGAGCAGGTTAAAAATAGC
66 CAGCGA-AGCAGGTTAAAAATAGC
* * * *
27337688 AGATTTTG-CTTGCCTGCACCGACAGCAAAGCAGATCGAAGACACCAACTTTGCCTCCCTGGGTT
1 AGATCTTGCCTT-CCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
27337752 GTAGCGGAGCAGGTTAAAAATAGT
65 GCAGCGAAGCAGGTTAAAAATAGC
* *
27337776 AGATCTTGCCTTCCTGCACCAACAGCGAAGTAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
27337841 CAGC-AGAGCAGGTTAAAAATAGC
66 CAGCGA-AGCAGGTTAAAAATAGC
* * * *
27337864 AGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCATCCTTGCCTCCTTAGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
*
27337929 CAGCGAAACAGGTTAAAAATAGC
66 CAGCGAAGCAGGTTAAAAATAGC
* * *
27337952 AGATCTTGCCTTCGTGTACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTC
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
27338017 CAGCGAAGCAGGTTAAAAATAGC
66 CAGCGAAGCAGGTTAAAAATAGC
* *
27338040 AGATCTTGCGTTCCTGCACCGACAGTGAAGCAGATC
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATC
27338076 AATGAACCCA
Statistics
Matches: 500, Mismatches: 57, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
87 72 0.14
88 424 0.85
89 4 0.01
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
CAGCGAAGCAGGTTAAAAATAGC
Found at i:27338584 original size:44 final size:44
Alignment explanation
Indices: 27338529--27338640 Score: 172
Period size: 44 Copynumber: 2.5 Consensus size: 44
27338519 GAAGATGGCG
*
27338529 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
*
27338572 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* *
27338617 GATCTTATCTCTCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
27338641 CAGAGTAGAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 61 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
Found at i:27339133 original size:21 final size:21
Alignment explanation
Indices: 27339085--27339160 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
27339075 ATCTTCAAGG
*
27339085 ATATGTAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
*
27339104 ATATCCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
27339125 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
27339146 TTATGCAATCTTAGA
1 ATATGCAATCTTAGA
27339161 AGATATGATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.33
21 34 0.67
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:27339182 original size:23 final size:24
Alignment explanation
Indices: 27339116--27339183 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 24
27339106 ATCCAATCTT
*
27339116 AGATATGATATATGCAATCTT---
1 AGATATGATTTATGCAATCTTAGA
27339137 AGATATGATTTATGCAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
*
27339161 AGATATGATTT-TGTAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
27339184 GATTTAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.48
23 11 0.26
24 11 0.26
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (24 bp):
AGATATGATTTATGCAATCTTAGA
Found at i:27341927 original size:44 final size:43
Alignment explanation
Indices: 27341792--27341934 Score: 108
Period size: 44 Copynumber: 3.3 Consensus size: 43
27341782 AGACATCAAC
* * *
27341792 CTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAATAGTAGAT
* ***** * * * * * *
27341835 CTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGATACTAG-C
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGT-TAAAATAGTAGAT
27341879 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGTAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTT-AAAATAGTAGAT
*
27341923 CTTGCCTTCCTG
1 CTTGCCTCCCTG
27341935 CACCGAAAGC
Statistics
Matches: 68, Mismatches: 28, Indels: 7
0.66 0.27 0.07
Matches are distributed among these distances:
43 30 0.44
44 31 0.46
45 7 0.10
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (43 bp):
CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAATAGTAGAT
Found at i:27342367 original size:44 final size:44
Alignment explanation
Indices: 27342143--27342367 Score: 104
Period size: 44 Copynumber: 5.1 Consensus size: 44
27342133 AGACACCAGC
*
27342143 CTTGCCTCCCTGGGTTGCAGC-AGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTCCAGCGA-AGCAGGTTAAAAATAGCAGAT
* *** * * ** * * *
27342187 CTTGCCTTCCT-GCACCGACAACGAAGCAGATCGAAGACA-C-CAT
1 CTTGCCTCCCTGGGTTC--CAGCGAAGCAGGTTAAAAATAGCAGAT
* * * *
27342230 CCTTGCCTCCTTAGGTTGCAGCGAAACAGGTTAAAAATAGCAGAT
1 -CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
* * * * ** * * * *
27342275 CTTGCCT-TC-GTGTACCGACAGCGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTGGGT-TC--CAGCGAAGCAGGTTAAAAATAGCAGAT
27342319 CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
27342363 CTTGC
1 CTTGC
27342368 GTTCCTGCAC
Statistics
Matches: 118, Mismatches: 50, Indels: 26
0.61 0.26 0.13
Matches are distributed among these distances:
42 2 0.02
43 36 0.31
44 40 0.34
45 36 0.31
46 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTCCAGCGAAGCAGGTTAAAAATAGCAGAT
Found at i:27342417 original size:88 final size:88
Alignment explanation
Indices: 27341744--27342394 Score: 905
Period size: 88 Copynumber: 7.4 Consensus size: 88
27341734 TGAAGATAAT
* * * * * *
27341744 AGATCTTTCCTTCCTGCATCGACAGTGAAGTAGATCGAAGACATCAACCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* * *
27341809 TAGTGGAGCAGGTT-AAAATAGC
66 CAGCGAAGCAGGTTAAAAATAGC
* * *
27341831 AGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGATACTAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* *
27341896 CAGCGGAGCAGGTTAAAAATAGT
66 CAGCGAAGCAGGTTAAAAATAGC
* * *
27341919 AGATCTTGCCTTCCTGCACCGAAAGCAAAGCAAATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
* *
27341984 TAAC-AGAGCAGGTTAAAAATAGC
66 CAGCGA-AGCAGGTTAAAAATAGC
* * * *
27342007 AGATTTTG-CTTGCCTGCACCGACAGCAAAGCAGATCGAAGACACCAACTTTGCCTCCCTGGGTT
1 AGATCTTGCCTT-CCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
27342071 GTAGCGGAGCAGGTTAAAAATAGT
65 GCAGCGAAGCAGGTTAAAAATAGC
* *
27342095 AGATCTTGCCTTCCTGCACCAACAGCGAAGTAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
27342160 CAGC-AGAGCAGGTTAAAAATAGC
66 CAGCGA-AGCAGGTTAAAAATAGC
* * * *
27342183 AGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCATCCTTGCCTCCTTAGGTTG
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
*
27342248 CAGCGAAACAGGTTAAAAATAGC
66 CAGCGAAGCAGGTTAAAAATAGC
* * *
27342271 AGATCTTGCCTTCGTGTACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTC
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
27342336 CAGCGAAGCAGGTTAAAAATAGC
66 CAGCGAAGCAGGTTAAAAATAGC
* *
27342359 AGATCTTGCGTTCCTGCACCGACAGTGAAGCAGATC
1 AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATC
27342395 AATGAACCCA
Statistics
Matches: 499, Mismatches: 58, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
87 71 0.14
88 424 0.85
89 4 0.01
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
CAGCGAAGCAGGTTAAAAATAGC
Found at i:27342903 original size:44 final size:44
Alignment explanation
Indices: 27342848--27342959 Score: 172
Period size: 44 Copynumber: 2.5 Consensus size: 44
27342838 GAAGATGGCG
*
27342848 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
*
27342891 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* *
27342936 GATCTTATCTCTCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
27342960 CAGAGTAGAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 61 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
Found at i:27343451 original size:21 final size:21
Alignment explanation
Indices: 27343404--27343478 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
27343394 ATCTTCAAGG
*
27343404 ATATGTAAT-TTAGATATG--
1 ATATGCAATCTTAGATATGAT
*
27343422 ATATCCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
27343443 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
27343464 TTATGCAATCTTAGA
1 ATATGCAATCTTAGA
27343479 AGATATGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
18 7 0.14
19 9 0.18
21 34 0.68
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.40
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:27343500 original size:23 final size:24
Alignment explanation
Indices: 27343434--27343501 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 24
27343424 ATCCAATCTT
*
27343434 AGATATGATATATGCAATCTT---
1 AGATATGATTTATGCAATCTTAGA
27343455 AGATATGATTTATGCAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
*
27343479 AGATATGATTT-TGTAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
27343502 GATTTAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.48
23 11 0.26
24 11 0.26
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (24 bp):
AGATATGATTTATGCAATCTTAGA
Found at i:27347035 original size:13 final size:13
Alignment explanation
Indices: 27347017--27347041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27347007 TTATTAAAAA
27347017 ATAATATATTTTT
1 ATAATATATTTTT
27347030 ATAATATATTTT
1 ATAATATATTTT
27347042 AATTAGTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATAATATATTTTT
Found at i:27349942 original size:18 final size:18
Alignment explanation
Indices: 27349921--27349960 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
27349911 ACATGCATTT
*
27349921 CATGAATTCCATGCAACC
1 CATGAATTCCATGCAAAC
* *
27349939 CATGGATTTCATGCAAAC
1 CATGAATTCCATGCAAAC
27349957 CATG
1 CATG
27349961 CATCTCATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (18 bp):
CATGAATTCCATGCAAAC
Found at i:27349968 original size:18 final size:18
Alignment explanation
Indices: 27349930--27349972 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
27349920 TCATGAATTC
* * *
27349930 CATGCAACCCATGGATTT
1 CATGCAAACCATGCATCT
27349948 CATGCAAACCATGCATCT
1 CATGCAAACCATGCATCT
27349966 CATGCAA
1 CATGCAA
27349973 TATGATGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (18 bp):
CATGCAAACCATGCATCT
Found at i:27349969 original size:27 final size:27
Alignment explanation
Indices: 27349912--27349971 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
27349902 CTATGCAAAA
*
27349912 CATGCATTTCATGAATTCCATGCAACC
1 CATGCATTTCATGAATACCATGCAACC
* * *
27349939 CATGGATTTCATGCAA-ACCATGCATCT
1 CATGCATTTCATG-AATACCATGCAACC
27349966 CATGCA
1 CATGCA
27349972 ATATGATGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
CATGCATTTCATGAATACCATGCAACC
Found at i:27356462 original size:18 final size:18
Alignment explanation
Indices: 27356377--27356465 Score: 88
Period size: 18 Copynumber: 4.9 Consensus size: 18
27356367 GGCATGCACT
*
27356377 CCATGCATTCCATACAAA
1 CCATGCATTCCATGCAAA
* ** *
27356395 ACATGTGTTCCATGTAAA
1 CCATGCATTCCATGCAAA
* * *
27356413 ACATGCATTTCATGCAAC
1 CCATGCATTCCATGCAAA
*
27356431 CCATGCATTTCATGCAAA
1 CCATGCATTCCATGCAAA
*
27356449 CCATGCATCCCATGCAA
1 CCATGCATTCCATGCAA
27356466 TATGCTGCAT
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (18 bp):
CCATGCATTCCATGCAAA
Found at i:27362828 original size:21 final size:21
Alignment explanation
Indices: 27362802--27362842 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
27362792 TAGTTCAGCT
*
27362802 TCCGGCGGGGGTTGTGGTTGC
1 TCCGGCGGAGGTTGTGGTTGC
27362823 TCCGGCGGAGGTTGTGGTTG
1 TCCGGCGGAGGTTGTGGTTG
27362843 TTCTAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.17, G:0.51, T:0.29
Consensus pattern (21 bp):
TCCGGCGGAGGTTGTGGTTGC
Found at i:27369327 original size:26 final size:27
Alignment explanation
Indices: 27369284--27369352 Score: 81
Period size: 25 Copynumber: 2.6 Consensus size: 27
27369274 ATCAACGGTG
* *
27369284 ATGAAAAAATTATAAAAAATTATA-AA
1 ATGAAAAAATTATTAAAAATTACATAA
27369310 AT-AAAAAATTAATT-AAAATTACATAA
1 ATGAAAAAATT-ATTAAAAATTACATAA
*
27369336 ATGAAAAAAATATTAAA
1 ATGAAAAAATTATTAAA
27369353 TAATATTCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
25 16 0.44
26 11 0.31
27 9 0.25
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.28
Consensus pattern (27 bp):
ATGAAAAAATTATTAAAAATTACATAA
Done.