Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67659327
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 461372 characters in sequence are not A, C, G, or T
File 95 of 216
Found at i:29471208 original size:35 final size:36
Alignment explanation
Indices: 29471162--29471230 Score: 131
Period size: 35 Copynumber: 1.9 Consensus size: 36
29471152 ATTCAACCAT
29471162 TTCAATATCCAACAAGCTTAAAACATAAT-AATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATCAATAAA
29471197 TTCAATATCCAACAAGCTTAAAACATAATCAATA
1 TTCAATATCCAACAAGCTTAAAACATAATCAATA
29471231 TCTAACAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 29 0.88
36 4 0.12
ACGTcount: A:0.52, C:0.19, G:0.03, T:0.26
Consensus pattern (36 bp):
TTCAATATCCAACAAGCTTAAAACATAATCAATAAA
Found at i:29471228 original size:27 final size:28
Alignment explanation
Indices: 29471198--29471267 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
29471188 AATAATAAAT
*
29471198 TCAATATCCAACAAGCTT-AAAACATA-A
1 TCAATATCCAACAA-ATTCAAAACATATA
* *
29471225 TCAATATCTAACAAATTCAAGACATATA
1 TCAATATCCAACAAATTCAAAACATATA
*
29471253 TCAAAATCCAACAAA
1 TCAATATCCAACAAA
29471268 CTAAAATTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.06
27 20 0.56
28 14 0.39
ACGTcount: A:0.53, C:0.21, G:0.03, T:0.23
Consensus pattern (28 bp):
TCAATATCCAACAAATTCAAAACATATA
Found at i:29472726 original size:17 final size:17
Alignment explanation
Indices: 29472671--29472726 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
29472661 ACTACAAAAA
29472671 GATGCCTGTAATTAGTT
1 GATGCCTGTAATTAGTT
* *
29472688 GATGCGTTTTCAATGCTAGTT
1 GATGC-CTGT-AAT--TAGTT
29472709 GATGCCTGTAATTAGTT
1 GATGCCTGTAATTAGTT
29472726 G
1 G
29472727 GATCTGCCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
17 11 0.35
18 2 0.06
19 6 0.19
20 2 0.06
21 10 0.32
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.41
Consensus pattern (17 bp):
GATGCCTGTAATTAGTT
Found at i:29474974 original size:25 final size:25
Alignment explanation
Indices: 29474918--29474984 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
29474908 AGCTTTGAGG
*
29474918 AATGGAAAATGTCTGCTGCTTAGAAGAG
1 AATGGAAAATG--T-CTGCTTAGAAGAA
29474946 AATGGAAAATGTCTGCTTAG-AGAAA
1 AATGGAAAATGTCTGCTTAGAAG-AA
*
29474971 AATGAAAAATGTCT
1 AATGGAAAATGTCT
29474985 TACCAATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 2 0.06
25 22 0.61
26 1 0.03
28 11 0.31
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.25
Consensus pattern (25 bp):
AATGGAAAATGTCTGCTTAGAAGAA
Found at i:29480174 original size:17 final size:17
Alignment explanation
Indices: 29480152--29480185 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
29480142 GTTAAATAAC
29480152 TTTACACACTTATTTAA
1 TTTACACACTTATTTAA
29480169 TTTACACACTTATTTAA
1 TTTACACACTTATTTAA
29480186 ATATAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTACACACTTATTTAA
Found at i:29484542 original size:15 final size:16
Alignment explanation
Indices: 29484522--29484551 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
29484512 ATATATAATT
29484522 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
29484537 TAATAAATATTCTTA
1 TAATAAATATTCTTA
29484552 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:29484702 original size:54 final size:58
Alignment explanation
Indices: 29484556--29484853 Score: 196
Period size: 59 Copynumber: 5.1 Consensus size: 58
29484546 TTCTTATATG
*
29484556 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAAATAA-TATTATTA
* * ** * * * * * *
29484615 AATATAATTTAATAAAAATATATAAT-TTAATAAAAT-T-CTTCATAATAA-A-TATTC
1 AATTTACTAAAATCATAATATATAATACT-ATAAAATATAATTCAAAATAATATTATTA
*
29484669 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAAATAA-TATTATTA
* * ** * **** * * *
29484728 AATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCT-TAA-TAATAAATATTCTTATAT
1 AAT-TTA-CTAA-AATCATA-AT-ATATAATA-CTATAAAATATAATTCA-AAATAATATTAT-T
*
29484791 G
58 A
* *
29484792 AATTTACTAAAATCATAATATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAAATAA-TATTATTA
29484851 AAT
1 AAT
29484854 ATAATTTAAT
Statistics
Matches: 172, Mismatches: 49, Indels: 36
0.67 0.19 0.14
Matches are distributed among these distances:
54 31 0.18
55 3 0.02
56 8 0.05
57 8 0.05
58 7 0.04
59 53 0.31
60 11 0.06
61 8 0.05
62 8 0.05
63 11 0.06
64 19 0.11
65 5 0.03
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (58 bp):
AATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAAATAATATTATTA
Found at i:29484746 original size:16 final size:17
Alignment explanation
Indices: 29484727--29484759 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
29484717 AATTATTATT
29484727 AAATATA-ATTTAATAA
1 AAATATAGATTTAATAA
29484743 AAATATATGATTTAATA
1 AAATATA-GATTTAATA
29484760 GCTATTGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
AAATATAGATTTAATAA
Found at i:29484805 original size:123 final size:120
Alignment explanation
Indices: 29484476--29484936 Score: 738
Period size: 123 Copynumber: 3.9 Consensus size: 120
29484466 TTAATCATAT
*
29484476 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAAT
29484541 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
29484596 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTCATAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAAT
29484661 AAATATTC-------AATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
29484709 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATA--AAAT-TCTTAAT
*
29484774 AATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATATTATAAAATATAA
63 AATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
29484832 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATA--AAAT-TCTTAAT
29484897 AATAAATATTCTTATATGAATTTACTAAAATCATAATATA
63 AATAAATATTCTTATATGAATTTACTAAAATCATAATATA
29484937 ACTTGAGAAT
Statistics
Matches: 324, Mismatches: 7, Indels: 17
0.93 0.02 0.05
Matches are distributed among these distances:
113 90 0.28
115 2 0.01
116 17 0.05
120 71 0.22
123 144 0.44
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:29484831 original size:22 final size:24
Alignment explanation
Indices: 29484786--29484832 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
29484776 TAAATATTCT
29484786 TATATGAATTTACTAAAATCATAA
1 TATATGAATTTACTAAAATCATAA
29484810 TATAT-AATATTA-TAAAAT-ATAA
1 TATATGAAT-TTACTAAAATCATAA
29484832 T
1 T
29484833 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 9 0.41
24 8 0.36
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
TATATGAATTTACTAAAATCATAA
Found at i:29484853 original size:26 final size:25
Alignment explanation
Indices: 29484813--29484871 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
29484803 ATCATAATAT
29484813 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
29484838 ATAATTATTATTAAATATAATTTAATA
1 ATAA-TATTATAAAATATAATTTAA-A
*
29484865 AAAATAT
1 ATAATAT
29484872 ATGATTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 4 0.13
26 22 0.73
27 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:29484869 original size:16 final size:17
Alignment explanation
Indices: 29484850--29484882 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
29484840 AATTATTATT
29484850 AAATATA-ATTTAATAA
1 AAATATAGATTTAATAA
29484866 AAATATATGATTTAATA
1 AAATATA-GATTTAATA
29484883 GCTATTGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
AAATATAGATTTAATAA
Found at i:29484904 original size:64 final size:64
Alignment explanation
Indices: 29484713--29484904 Score: 195
Period size: 64 Copynumber: 3.1 Consensus size: 64
29484703 ATATAATTTA
29484713 AAATAATTATTATTAAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAAT
1 AAATAATTATTATTAAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAAT
* * * * * ****
29484777 AAAT-ATTCTTA-T--AT-GAATTTACT-AAAATCATAAT-ATATAATA-TTATAAAATATAAT-
1 AAATAATTATTATTAAATATAATTTAATAAAAAT-AT-ATGATTTAATAGCTATTGTCT-TAATA
*
29484833 TT
63 AT
29484835 AAAATAATTATTATTAAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAAT
1 -AAATAATTATTATTAAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAAT
29484900 AAATA
1 AAATA
29484905 TTCTTATATG
Statistics
Matches: 95, Mismatches: 20, Indels: 26
0.67 0.14 0.18
Matches are distributed among these distances:
58 10 0.11
59 24 0.25
60 10 0.11
61 1 0.01
62 1 0.01
63 10 0.11
64 29 0.31
65 10 0.11
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (64 bp):
AAATAATTATTATTAAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAAT
Found at i:29484926 original size:59 final size:58
Alignment explanation
Indices: 29484729--29484926 Score: 195
Period size: 59 Copynumber: 3.3 Consensus size: 58
29484719 TTATTATTAA
29484729 ATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTT
1 ATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTT
* * ** ** * *
29484787 ATATGAATTTACTAAAATCATAATAT-ATAATATTATAAAATATAAT-TTAA-AATAATTATTAT
1 ATAT-AATTTAATAAAA--AT-ATATGAT--T-TAAT-AGCTATTGTCTTAATAATAAATATTCT
29484849 T
58 T
29484850 AAATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTT
1 --ATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTT
*
29484910 ATATGAATTTACTAAAA
1 ATAT-AATTTAATAAAA
29484927 TCATAATATA
Statistics
Matches: 109, Mismatches: 17, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
58 13 0.12
59 29 0.27
60 12 0.11
61 8 0.07
62 8 0.07
63 12 0.11
64 18 0.17
65 9 0.08
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (58 bp):
ATATAATTTAATAAAAATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTT
Found at i:29484935 original size:64 final size:64
Alignment explanation
Indices: 29484744--29484936 Score: 215
Period size: 64 Copynumber: 3.1 Consensus size: 64
29484734 ATTTAATAAA
29484744 AATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCAT
* ** ** * * *
29484808 AATATATAATATT-ATAAAATATAAT-TTAA-AATAATTATTATTAAATAT-AATTTA--ATAA-
1 AATATATGAT-TTAAT-AGCTATTGTCTTAATAATAAATATTCTT--ATATGAATTTACTAAAAT
29484866 -A-
62 CAT
29484867 AATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCAT
29484931 AATATA
1 AATATA
29484937 ACTTGAGAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
58 11 0.11
59 21 0.21
60 12 0.12
61 3 0.03
62 3 0.03
63 12 0.12
64 27 0.27
65 11 0.11
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (64 bp):
AATATATGATTTAATAGCTATTGTCTTAATAATAAATATTCTTATATGAATTTACTAAAATCAT
Found at i:29489800 original size:41 final size:41
Alignment explanation
Indices: 29489660--29489772 Score: 217
Period size: 41 Copynumber: 2.8 Consensus size: 41
29489650 GACTTTAAGT
*
29489660 CTAGCGGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
29489701 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
29489742 CTAGCAGGCTACGTGCCGGTGATCTGAATCA
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCA
29489773 TGCTATAAGT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:29490720 original size:49 final size:49
Alignment explanation
Indices: 29490648--29490751 Score: 156
Period size: 49 Copynumber: 2.1 Consensus size: 49
29490638 AGAAAAAAAC
* * *
29490648 AAATTAAAATTAAGTTGAATATCATGAATCAAAAGGTGAACACTT-TATA
1 AAATTAAAATTAAGTTAAATATCATGAATCAAAAGCTCAACA-TTGTATA
*
29490697 AAATTAAAATTAAGTTAAATATCATGAATCTAAAGCTCAACATTGTATA
1 AAATTAAAATTAAGTTAAATATCATGAATCAAAAGCTCAACATTGTATA
29490746 AAATTA
1 AAATTA
29490752 TAACACATGA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 2 0.04
49 48 0.96
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTAAATATCATGAATCAAAAGCTCAACATTGTATA
Found at i:29492538 original size:33 final size:33
Alignment explanation
Indices: 29492494--29492559 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
29492484 GAATTAAAAT
29492494 TTGTAGGTATATGTATAATTGAGCTAAAATTAA
1 TTGTAGGTATATGTATAATTGAGCTAAAATTAA
*
29492527 TTGTTGGTATATGTATAATTGAGCTAAAATTAA
1 TTGTAGGTATATGTATAATTGAGCTAAAATTAA
29492560 AATTTCATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (33 bp):
TTGTAGGTATATGTATAATTGAGCTAAAATTAA
Found at i:29492795 original size:19 final size:19
Alignment explanation
Indices: 29492768--29492804 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
29492758 AACAAATTAA
*
29492768 TTGTTGGTATATGTAAAAT
1 TTGTAGGTATATGTAAAAT
29492787 TTGTAGGTATATGTAAAA
1 TTGTAGGTATATGTAAAA
29492805 ATAAATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (19 bp):
TTGTAGGTATATGTAAAAT
Found at i:29493126 original size:18 final size:18
Alignment explanation
Indices: 29493105--29493139 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
29493095 TTAAATATAT
*
29493105 AATTTAATTAGTTTTATG
1 AATTTAAATAGTTTTATG
*
29493123 AATTTAAATATTTTTAT
1 AATTTAAATAGTTTTAT
29493140 TTTAACCAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
AATTTAAATAGTTTTATG
Found at i:29495618 original size:22 final size:21
Alignment explanation
Indices: 29495574--29495615 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
29495564 TTTACATAAT
29495574 TTTTTTCACCCACATCGCGGG
1 TTTTTTCACCCACATCGCGGG
29495595 TTTTTTCACCCACATCGCGGG
1 TTTTTTCACCCACATCGCGGG
29495616 GTTATTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.33, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTTTTCACCCACATCGCGGG
Found at i:29503689 original size:27 final size:28
Alignment explanation
Indices: 29503605--29503702 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
29503595 CATGAGATTG
* * * *
29503605 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
29503634 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
29503662 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
29503689 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
29503703 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:29503713 original size:27 final size:27
Alignment explanation
Indices: 29503633--29503715 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
29503623 TAAATTGTAC
* *
29503633 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
29503661 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
29503688 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
29503715 A
1 A
29503716 TTTTTGAACC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:29503716 original size:29 final size:27
Alignment explanation
Indices: 29503605--29503716 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
29503595 CATGAGATTG
** * *
29503605 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
29503634 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
29503662 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
29503689 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
29503717 TTTTGAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:29511553 original size:27 final size:28
Alignment explanation
Indices: 29511469--29511566 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
29511459 CATGAGATTG
* * * *
29511469 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
29511498 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
29511526 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
29511553 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
29511567 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:29511577 original size:27 final size:27
Alignment explanation
Indices: 29511497--29511579 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
29511487 TAAATTGTAC
* *
29511497 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
29511525 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
29511552 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
29511579 A
1 A
29511580 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:29511580 original size:29 final size:27
Alignment explanation
Indices: 29511469--29511580 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
29511459 CATGAGATTG
** * *
29511469 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
29511498 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
29511526 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
29511553 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
29511581 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:29514319 original size:13 final size:13
Alignment explanation
Indices: 29514296--29514365 Score: 56
Period size: 13 Copynumber: 5.4 Consensus size: 13
29514286 ACTAACTTAT
*
29514296 ATTATATATATTTG
1 ATTA-ATATATTTA
29514310 ATTAATATA-TTA
1 ATTAATATATTTA
*
29514322 ATTAACT-TAATTA
1 ATTAA-TATATTTA
* *
29514335 ATCTTATATATTTG
1 AT-TAATATATTTA
29514349 ATTAATATA-TTA
1 ATTAATATATTTA
29514361 ATTAA
1 ATTAA
29514366 CTTAATTAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
12 16 0.35
13 18 0.39
14 12 0.26
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (13 bp):
ATTAATATATTTA
Found at i:29514320 original size:22 final size:22
Alignment explanation
Indices: 29514293--29514360 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 22
29514283 TCCACTAACT
29514293 TATATTATATATATTTGATTAA
1 TATATTATATATATTTGATTAA
* *
29514315 TATATTA-AT-TAACTTAATT-A
1 TATATTATATAT-ATTTGATTAA
*
29514335 -AT-CT-TATATATTTGATTAA
1 TATATTATATATATTTGATTAA
29514354 TATATTA
1 TATATTA
29514361 ATTAACTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
18 9 0.27
19 4 0.12
20 4 0.12
21 9 0.27
22 7 0.21
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (22 bp):
TATATTATATATATTTGATTAA
Found at i:29514345 original size:39 final size:39
Alignment explanation
Indices: 29514300--29514379 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
29514290 ACTTATATTA
29514300 TATATATTTGATTAATATATTAATTAACTTAATTAATCT
1 TATATATTTGATTAATATATTAATTAACTTAATTAATCT
29514339 TATATATTTGATTAATATATTAATTAACTTAATTAATCT
1 TATATATTTGATTAATATATTAATTAACTTAATTAATCT
29514378 TA
1 TA
29514380 CTTAATTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (39 bp):
TATATATTTGATTAATATATTAATTAACTTAATTAATCT
Found at i:29515304 original size:20 final size:21
Alignment explanation
Indices: 29515265--29515304 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
29515255 ATTATTGACA
*
29515265 TTTTATAATTAAAAATTATTTT
1 TTTTATAATT-AAAACTATTTT
29515287 TTTTATAATT-AAACTATT
1 TTTTATAATTAAAACTATT
29515305 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTATAATTAAAACTATTTT
Found at i:29517063 original size:23 final size:23
Alignment explanation
Indices: 29517037--29517083 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
29517027 TTTGGTGCAG
*
29517037 TGCAGTTGTACTGCCTAGGGTCT
1 TGCAGTTGTACTGCCTAAGGTCT
29517060 TGCAGTTGTACTGCCTAAGGTCT
1 TGCAGTTGTACTGCCTAAGGTCT
29517083 T
1 T
29517084 TTTTCTCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.15, C:0.21, G:0.28, T:0.36
Consensus pattern (23 bp):
TGCAGTTGTACTGCCTAAGGTCT
Found at i:29517988 original size:24 final size:24
Alignment explanation
Indices: 29517951--29518007 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
29517941 CTGTTGTTGA
29517951 AGTTTTCAATTGAAAATGGTTTCTGT
1 AGTTTTC--TTGAAAATGGTTTCTGT
*
29517977 ATTTTTCTTGAAAATGGTTTCTGT
1 AGTTTTCTTGAAAATGGTTTCTGT
29518001 AGTTTTC
1 AGTTTTC
29518008 AATTTGTGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 23 0.79
26 6 0.21
ACGTcount: A:0.23, C:0.09, G:0.18, T:0.51
Consensus pattern (24 bp):
AGTTTTCTTGAAAATGGTTTCTGT
Found at i:29519048 original size:24 final size:24
Alignment explanation
Indices: 29519016--29519065 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
29519006 GTATAATTTG
29519016 AACCCAAATCACATTTGAGGTGAT
1 AACCCAAATCACATTTGAGGTGAT
29519040 AACCCAAATCACATTTGAGGTGAT
1 AACCCAAATCACATTTGAGGTGAT
29519064 AA
1 AA
29519066 ATACTTTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (24 bp):
AACCCAAATCACATTTGAGGTGAT
Found at i:29519717 original size:45 final size:44
Alignment explanation
Indices: 29519634--29519720 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 44
29519624 AATATCATTC
* **
29519634 CATTCAACCAAACACAAGAATACTATTATGCCTCTATTCCATCA
1 CATTCAACCAAACACAAGAATACTATTACGCAACTATTCCATCA
29519678 CATTCAACCAAACA-ATTA-AATTACTATTACGCAACTATTCCAT
1 CATTCAACCAAACACA--AGAA-TACTATTACGCAACTATTCCAT
29519721 TACAGCTCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
43 1 0.03
44 16 0.43
45 20 0.54
ACGTcount: A:0.40, C:0.28, G:0.03, T:0.29
Consensus pattern (44 bp):
CATTCAACCAAACACAAGAATACTATTACGCAACTATTCCATCA
Found at i:29523014 original size:44 final size:43
Alignment explanation
Indices: 29522949--29523147 Score: 163
Period size: 43 Copynumber: 4.6 Consensus size: 43
29522939 TGATTTCATA
* * *
29522949 TAAGACCATAGCTGGGCTATGGCACCGATATATGAGACTTTGTG
1 TAAGACCATATCTGGGATATGGCATCGATATATGAGA-TTTGTG
* *
29522993 TAAGACCATATATGGGATATGGCATCGATATAT-ATGATTACGTG
1 TAAGACCATATCTGGGATATGGCATCGATATATGA-GATT-TGTG
* * *
29523037 TAAGACCATGTCTGGGACATTGGCATCG-T-TATGTGATTTCGTG
1 TAAGACCATATCTGGGATA-TGGCATCGATATATGAGATTT-GTG
* * * * * ***
29523080 TAAGACCATAGCTGGGCTATTGACATCGATATGTGATA-ACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATATGAGATTTGTG
*
29523123 TAAGGCCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
29523148 TGTATGTGTT
Statistics
Matches: 123, Mismatches: 25, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
42 5 0.04
43 54 0.44
44 52 0.42
45 12 0.10
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
TAAGACCATATCTGGGATATGGCATCGATATATGAGATTTGTG
Found at i:29529002 original size:49 final size:45
Alignment explanation
Indices: 29528914--29529015 Score: 132
Period size: 49 Copynumber: 2.2 Consensus size: 45
29528904 TTCATATAGA
* * *
29528914 ACTACACTTCTTTTATTTTATTTTAGAATAAGGTTTTTCAACCTT
1 ACTACACTTCATTTATTTTATTTTAGAATAAGATGTTTCAACCTT
*
29528959 ATTACACTTCATTTATTTGATATTGATTAGAATAAGATGTTTCAACCTT
1 ACTACACTTCATTTATTT--TATT--TTAGAATAAGATGTTTCAACCTT
29529008 ACTACACT
1 ACTACACT
29529016 CCTTCTATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 16 0.33
47 4 0.08
49 28 0.58
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (45 bp):
ACTACACTTCATTTATTTTATTTTAGAATAAGATGTTTCAACCTT
Found at i:29533511 original size:49 final size:49
Alignment explanation
Indices: 29533412--29533511 Score: 121
Period size: 49 Copynumber: 2.0 Consensus size: 49
29533402 TTATTTTATT
* * * ** *
29533412 TTAGAATAAGGTTTTTCAACCTTATTATACTTCATCTATTTGATATTGA
1 TTAGAATAAGGTATTTCAACCTTACTACACCCCATCTATTAGATATTGA
*
29533461 TTAGAATAAGGTATTTCAACCTTACTACACCCCTTCTATTAGA-ATATGA
1 TTAGAATAAGGTATTTCAACCTTACTACACCCCATCTATTAGATAT-TGA
29533510 TT
1 TT
29533512 TTACAAGCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 2 0.05
49 41 0.95
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (49 bp):
TTAGAATAAGGTATTTCAACCTTACTACACCCCATCTATTAGATATTGA
Found at i:29539783 original size:12 final size:12
Alignment explanation
Indices: 29539766--29539790 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29539756 AGCAACAATG
29539766 ATTTTAGTTTTT
1 ATTTTAGTTTTT
29539778 ATTTTAGTTTTT
1 ATTTTAGTTTTT
29539790 A
1 A
29539791 GTTTCTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (12 bp):
ATTTTAGTTTTT
Found at i:29541902 original size:3 final size:3
Alignment explanation
Indices: 29541894--29541921 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
29541884 TCAATTTCAT
29541894 CAG CAG CAG CAG CAG CAG CAG CAG CAG C
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG C
29541922 CAAGGAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:29548084 original size:16 final size:16
Alignment explanation
Indices: 29548063--29548103 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
29548053 AAATATTATT
29548063 ATTAAATTCAAATGAA
1 ATTAAATTCAAATGAA
* *
29548079 ATTAAACTGAAATGAA
1 ATTAAATTCAAATGAA
*
29548095 ATGAAATTC
1 ATTAAATTC
29548104 CAAAGACTAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.29
Consensus pattern (16 bp):
ATTAAATTCAAATGAA
Found at i:29548855 original size:19 final size:19
Alignment explanation
Indices: 29548831--29548867 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
29548821 TGAAACAAGT
*
29548831 TATAATTTTTTTAAAAATA
1 TATAATATTTTTAAAAATA
*
29548850 TATAATATTTTTAGAAAT
1 TATAATATTTTTAAAAAT
29548868 TACTTGCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
TATAATATTTTTAAAAATA
Found at i:29564398 original size:51 final size:50
Alignment explanation
Indices: 29564343--29564526 Score: 199
Period size: 51 Copynumber: 3.6 Consensus size: 50
29564333 TCAGTTCACA
* * * *
29564343 TAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATTTGATCCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATTCGATACACG
* * * * * * *
29564394 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATTCGATACACG
* * * *
29564445 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCAGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATTCGA-TACACG
29564495 TAGTAGCCTGCACATAGTACTACACACGTGAC
1 TAGTAGCCTGCACATAGTACTACACACGTGAC
29564527 AATCACTTTC
Statistics
Matches: 107, Mismatches: 24, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
49 4 0.04
50 35 0.33
51 66 0.62
52 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATTCGATACACG
Found at i:29564519 original size:101 final size:101
Alignment explanation
Indices: 29564341--29564525 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
29564331 GTTCAGTTCA
* * ** *
29564341 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATTTGATCCACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATTCCATACACGTAGTAGCCTGCA
29564406 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
*
29564443 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCAGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATTCCA-TACACGTAGTAGCCTGCA
29564507 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
29564526 CAATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 7 0.09
101 36 0.47
102 33 0.43
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATTCCATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:29569564 original size:6 final size:6
Alignment explanation
Indices: 29569553--29569600 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
29569543 GTCTCCCTGC
* *
29569553 AAAATA AAAATA AAAATA AATAATA AGAAA-A AAAATT AAAATT AAAAT
1 AAAATA AAAATA AAAATA AA-AATA A-AAATA AAAATA AAAATA AAAAT
29569601 GGGTATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
5 3 0.08
6 27 0.71
7 7 0.18
8 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:29569575 original size:16 final size:16
Alignment explanation
Indices: 29569554--29569600 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
29569544 TCTCCCTGCA
29569554 AAATAAAAATAAAAAT
1 AAATAAAAATAAAAAT
* *
29569570 AAATAATAAGAAAAA-
1 AAATAAAAATAAAAAT
* *
29569585 AAATTAAAATTAAAAT
1 AAATAAAAATAAAAAT
29569601 GGGTATTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (16 bp):
AAATAAAAATAAAAAT
Found at i:29584016 original size:7 final size:7
Alignment explanation
Indices: 29584004--29584028 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
29583994 TTAAAAGAAG
29584004 AAATTCT
1 AAATTCT
29584011 AAATTCT
1 AAATTCT
29584018 AAATTCT
1 AAATTCT
29584025 AAAT
1 AAAT
29584029 CCAAAATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATTCT
Found at i:29586351 original size:21 final size:21
Alignment explanation
Indices: 29586327--29586371 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
29586317 AACACCAACC
29586327 TTATAACCAAGAAAAACACAT
1 TTATAACCAAGAAAAACACAT
29586348 TTATAACCAAGAAAAACACAT
1 TTATAACCAAGAAAAACACAT
29586369 TTA
1 TTA
29586372 ATAGATCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.56, C:0.18, G:0.04, T:0.22
Consensus pattern (21 bp):
TTATAACCAAGAAAAACACAT
Found at i:29590975 original size:140 final size:137
Alignment explanation
Indices: 29590656--29591048 Score: 599
Period size: 140 Copynumber: 2.8 Consensus size: 137
29590646 TAGAAAAATA
* *
29590656 AATTATATTCTTTCCAAAAG-ATATTAATTTCCATGCCTTTTATATTTTAACCGAAGTTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAA-TTAATTAA
* *
29590720 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
65 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATT
29590785 CATATATT
130 CATATATT
* * *
29590793 AATTATATTCTTTCCAAAAAAATAATAATTTCAATGTCTTTTATATTTTGACCGATATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGA-ATTAATTAA
* *
29590858 TATAACTATTTATATTAATAAATTTGGTAAAATATAAATATAAATAATATTTTGTATGAATCAAA
65 TATAACTATTTATATTAATAAATTCGGTAAAATAT--ATACAAATAATATTTTGTATGAATCAAA
29590923 TTCATATATT
128 TTCATATATT
* * *
29590933 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATATTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACC-GAATTAATTAA
* * *
29590998 TATATCTATTTATATTAATAAATTCGGTAAAATGTATACAATTAATATTTT
65 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTT
29591049 ATATTTTGAT
Statistics
Matches: 231, Mismatches: 20, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
137 19 0.08
138 85 0.37
139 1 0.00
140 125 0.54
141 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAATTAATTAAT
ATAACTATTTATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATTC
ATATATT
Found at i:29590980 original size:71 final size:70
Alignment explanation
Indices: 29590764--29590982 Score: 166
Period size: 71 Copynumber: 3.1 Consensus size: 70
29590754 TATACAATTA
* *
29590764 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAAAATAATAATTTCAATG
1 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCC-AAAAAATATTAATTTCAATA
*
29590829 TCTTTT
65 TATTTT
* * * * * * *
29590835 ATATTTTG-ACCGATAT-TAATT-A-ATA-TAACTAT-TTATATT--AATAAATTTGGTAAAATA
1 ATATTTTGTA-TGA-ATCAAATTCATATATTAATTATATTCT-TTCCAAAAAATAT--T--AATT
* ** *
29590892 TAAATATAAATA
59 TCAATATATTTT
*
29590904 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATA
1 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAA-AATATTAATTTCAATA
29590969 TATTTT
65 TATTTT
29590975 ATATTTTG
1 ATATTTTG
29590983 ACCAAAATTA
Statistics
Matches: 106, Mismatches: 26, Indels: 32
0.65 0.16 0.20
Matches are distributed among these distances:
65 6 0.06
67 4 0.04
68 10 0.09
69 26 0.25
70 4 0.04
71 35 0.33
72 10 0.09
73 4 0.04
74 3 0.03
75 4 0.04
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (70 bp):
ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAAATATTAATTTCAATAT
ATTTT
Found at i:29594475 original size:18 final size:17
Alignment explanation
Indices: 29594423--29594472 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
29594413 GTTGGGCTTG
*
29594423 GCCTTTCCATTGTCCTTA
1 GCCTTTCCTTTG-CCTTA
* *
29594441 GGCTTTGCCTTAGCCTTA
1 GCCTTT-CCTTTGCCTTA
29594459 GCCTTTCCTTTGCC
1 GCCTTTCCTTTGCC
29594473 CTTGTTCTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.08, C:0.34, G:0.16, T:0.42
Consensus pattern (17 bp):
GCCTTTCCTTTGCCTTA
Found at i:29598503 original size:134 final size:132
Alignment explanation
Indices: 29598315--29598688 Score: 432
Period size: 134 Copynumber: 2.8 Consensus size: 132
29598305 AGGGGTATAA
* *
29598315 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCTGATGAGGGTATTTCGGTCATATTA
1 CAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCTGAAGAGGGTATTTCGGTCATATTA
* *
29598380 CCCTATGAGGATATTTTAGTCATTCTACCCTATGGGGGTATTTCAATCATTTTACCCTATGGGGT
66 CCCTATGAGG-TATTTTAGTCATT-TACCCTATGGGGGTATTTCAATCATTCTACCCTATAGGGT
29598445 ATTT
129 ATTT
* * * *
29598449 CGGTCATTCTACCCTATGGGGGTAGTTT-GGTCATTCTACCCT-AAGAGGGTATTTCGGTCATCT
1 CAGTCATTTTACCCTATGGGGGTA-TTTCGGTCATTTTA-CCTGAAGAGGGTATTTCGGTCATAT
* * * ***
29598512 TACCCTATAAGGGTATTTTAGTCATTTTATCCTATAGGGGTATTTTTGTCATTCTACCCTATAGG
64 TACCCTATGA-GGTATTTTAGTCA-TTTACCCTATGGGGGTATTTCAATCATTCTACCCTATAGG
29598577 GTATTT
127 GTATTT
* * * * * *
29598583 CAGTCATTTTATCCTATGGGGGTATTTCGGTTATTTTATCTTGTA-AGGGTATTTCGGTAATTTT
1 CAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTA-CCTGAAGAGGGTATTTCGGTCATATT
* * * *
29598647 ACCTTATG-GGTATTTTGGTCAGTTTACCTTATGAGGGTATTT
65 ACCCTATGAGGTATTTTAGTCA-TTTACCCTATGGGGGTATTT
29598689 TGGTCATTTT
Statistics
Matches: 202, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
132 28 0.14
133 3 0.01
134 160 0.79
135 11 0.05
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.42
Consensus pattern (132 bp):
CAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCTGAAGAGGGTATTTCGGTCATATTA
CCCTATGAGGTATTTTAGTCATTTACCCTATGGGGGTATTTCAATCATTCTACCCTATAGGGTAT
TT
Found at i:29598702 original size:27 final size:27
Alignment explanation
Indices: 29598317--29598701 Score: 370
Period size: 27 Copynumber: 14.4 Consensus size: 27
29598307 GGGTATAACA
*
29598317 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
29598344 ATCATTTTA-CCTGATGAGGGTATTTCG
1 GTCATTTTACCCT-ATGAGGGTATTTCG
* * **
29598371 GTCATATTACCCTATGAGGATATTTTA
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
29598398 GTCATTCTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCG
*
29598425 ATCATTTTACCCTATG-GGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
29598451 GTCATTCTACCCTATGGGGGTAGTTT-G
1 GTCATTTTACCCTATGAGGGTA-TTTCG
* *
29598478 GTCATTCTACCCTAAGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * **
29598505 GTCATCTTACCCTATAAGGGTATTTTA
1 GTCATTTTACCCTATGAGGGTATTTCG
* **
29598532 GTCATTTTATCCTAT-AGGGGTATTTTT
1 GTCATTTTACCCTATGA-GGGTATTTCG
* *
29598559 GTCATTCTACCCTAT-AGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
29598585 GTCATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * * * *
29598612 GTTATTTTATCTTGTAAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
29598639 GTAATTTTACCTTAT--GGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
29598664 GTCAGTTTACCTTATGAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
29598691 GTCATTTTACC
1 GTCATTTTACC
29598702 TATTTTGGGG
Statistics
Matches: 301, Mismatches: 48, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
25 22 0.07
26 51 0.17
27 222 0.74
28 6 0.02
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:29606719 original size:6 final size:6
Alignment explanation
Indices: 29606671--29606707 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
29606661 AAAAAGAACA
29606671 AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG A
1 AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG A
29606708 GGAAAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGAG
Found at i:29611185 original size:21 final size:21
Alignment explanation
Indices: 29611161--29611202 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
29611151 CATTTTTTTT
*
29611161 ATCTTTTAGTCCCAGAATCAA
1 ATCTTTTAGTCCCAAAATCAA
29611182 ATCTTTTAGTCCCAAAATCAA
1 ATCTTTTAGTCCCAAAATCAA
29611203 GCTGTGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (21 bp):
ATCTTTTAGTCCCAAAATCAA
Found at i:29618114 original size:20 final size:19
Alignment explanation
Indices: 29618091--29618155 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
29618081 AAGCTCAAAC
29618091 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
29618111 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
29618131 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
29618151 GAGCT
1 GAGCT
29618156 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:29629030 original size:140 final size:139
Alignment explanation
Indices: 29628778--29629190 Score: 611
Period size: 140 Copynumber: 3.0 Consensus size: 139
29628768 TAGAAAAATG
* ** *
29628778 AATTATATTCTTTCTAAAAGAATATTAATTTGTATATCTTTTATATTTTGACCGAAATTAATTTA
1 AATTATATTCTTTCTAAACGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTTA
* * *
29628843 TATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATTAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATAT-TACAATTAATATTTTGTATGAATCAAATT
29628908 CATATATATT
130 CATATATATT
* *
29628918 AATTATATTCTTTCCAAACTAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAA-TTA
1 AATTATATTCTTTCTAAACGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTTA
*
29628982 GTATAACTTTTTATATTAATAAATTCGGTAAAATATTGACAATTAATATTTTGTATGAATCAAAT
66 -TATAACTATTTATATTAATAAATTCGGTAAAATATT-ACAATTAATATTTTGTATGAATCAAAT
29629047 TC--ATATATT
129 TCATATATATT
* * *
29629056 AATTATATTCTTT-TTAACGGAATATTAATTTCCATGTCTTCTATATCTTGACCGAAATTAATTT
1 AATTATATTCTTTCTAAAC-GAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTT
* * *
29629120 ATATAACTATTTATATTAATAAATTCGGTAATATA-TATAATTAATATTTTGTATGAATCAAACT
65 ATATAACTATTTATATTAATAAATTCGGTAAAATATTACAATTAATATTTTGTATGAATCAAATT
29629184 CATATAT
130 CATATAT
29629191 TAATTTTATC
Statistics
Matches: 249, Mismatches: 18, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
136 27 0.11
137 4 0.02
138 95 0.38
139 7 0.03
140 116 0.47
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (139 bp):
AATTATATTCTTTCTAAACGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTTA
TATAACTATTTATATTAATAAATTCGGTAAAATATTACAATTAATATTTTGTATGAATCAAATTC
ATATATATT
Found at i:29633614 original size:26 final size:26
Alignment explanation
Indices: 29633585--29633653 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
29633575 CGTTTCGACC
* **
29633585 CACAGCTCATGTGAGCAGGCTCATTT
1 CACAGCTCGTGTGAGCAAACTCATTT
* *
29633611 CACAGCCCGTGTAAGCAAACTCATTT
1 CACAGCTCGTGTGAGCAAACTCATTT
*
29633637 CATAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
29633654 TATATGTACA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAAACTCATTT
Found at i:29640545 original size:15 final size:15
Alignment explanation
Indices: 29640525--29640554 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
29640515 ATGTTATAAT
29640525 AATAAATAAAAAGAA
1 AATAAATAAAAAGAA
*
29640540 AATAAATGAAAAGAA
1 AATAAATAAAAAGAA
29640555 TATTAAGGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AATAAATAAAAAGAA
Found at i:29641869 original size:23 final size:25
Alignment explanation
Indices: 29641822--29641879 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
29641812 GGCTAAGGCT
29641822 ATGTTTGGTATGATAGCTTAGCTTA
1 ATGTTTGGTATGATAGCTTAGCTTA
*
29641847 ATGTTTGGTATG-T-GTTTAGCTTA
1 ATGTTTGGTATGATAGCTTAGCTTA
* *
29641870 AAGCTTGGTA
1 ATGTTTGGTA
29641880 GCCTAAGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 17 0.57
24 1 0.03
25 12 0.40
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.45
Consensus pattern (25 bp):
ATGTTTGGTATGATAGCTTAGCTTA
Found at i:29643737 original size:14 final size:14
Alignment explanation
Indices: 29643718--29643744 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
29643708 CACTGTTCAT
29643718 AGCACTACTCAATG
1 AGCACTACTCAATG
29643732 AGCACTACTCAAT
1 AGCACTACTCAAT
29643745 TTATGCTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.30, G:0.11, T:0.22
Consensus pattern (14 bp):
AGCACTACTCAATG
Found at i:29644456 original size:16 final size:17
Alignment explanation
Indices: 29644409--29644462 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 17
29644399 TCTGTATTAT
*
29644409 TATTTAA-AAATCAATA
1 TATTTAATAAATAAATA
*
29644425 TATTTAAT-TATAAA-A
1 TATTTAATAAATAAATA
29644440 TATTTTAATAAATAAATA
1 TA-TTTAATAAATAAATA
*
29644458 AATTT
1 TATTT
29644463 GAATTTAGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
15 3 0.10
16 17 0.57
17 8 0.27
18 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TATTTAATAAATAAATA
Found at i:29644929 original size:16 final size:18
Alignment explanation
Indices: 29644907--29644945 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
29644897 TGTTTATATT
*
29644907 TTTTTTTGA-ATTTATAA
1 TTTTTTAGATATTTATAA
*
29644924 TTTTTTATATATTTATAA
1 TTTTTTAGATATTTATAA
29644942 TTTT
1 TTTT
29644946 AATTGTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTTTAGATATTTATAA
Found at i:29648520 original size:43 final size:45
Alignment explanation
Indices: 29648476--29648578 Score: 172
Period size: 47 Copynumber: 2.3 Consensus size: 45
29648466 CATTTAATTG
29648476 TTATTTATTTA-CTTAGTTTTAATCAAACTTACATTAGTATTTGT
1 TTATTTATTTATCTTAGTTTTAATCAAACTTACATTAGTATTTGT
*
29648520 TTATTTATTTATTGGTTAGTTTTAATCAAACTTACATTAGTATTTGT
1 TTATTTATTTA-T-CTTAGTTTTAATCAAACTTACATTAGTATTTGT
29648567 TTATTTATTTAT
1 TTATTTATTTAT
29648579 TGGTTTGTTC
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
44 11 0.20
46 1 0.02
47 43 0.78
ACGTcount: A:0.28, C:0.07, G:0.08, T:0.57
Consensus pattern (45 bp):
TTATTTATTTATCTTAGTTTTAATCAAACTTACATTAGTATTTGT
Found at i:29648545 original size:47 final size:47
Alignment explanation
Indices: 29648488--29648583 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
29648478 ATTTATTTAC
29648488 TTAGTTTTAATCAAACTTACATTAGTATTTGTTTATTTATTTATTGG
1 TTAGTTTTAATCAAACTTACATTAGTATTTGTTTATTTATTTATTGG
29648535 TTAGTTTTAATCAAACTTACATTAGTATTTGTTTATTTATTTATTGG
1 TTAGTTTTAATCAAACTTACATTAGTATTTGTTTATTTATTTATTGG
29648582 TT
1 TT
29648584 TGTTCATTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.27, C:0.06, G:0.10, T:0.56
Consensus pattern (47 bp):
TTAGTTTTAATCAAACTTACATTAGTATTTGTTTATTTATTTATTGG
Found at i:29649195 original size:107 final size:106
Alignment explanation
Indices: 29648948--29649264 Score: 535
Period size: 107 Copynumber: 3.0 Consensus size: 106
29648938 TAAAGAAAGG
29648948 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
1 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
* * *
29649013 CAATTTCTCATTTGACCAAATAGCCAAGTATCCTTCTAAAA
66 CGATTTCTCATTTGACCAAATAGCCAAATATCCTTTTAAAA
*
29649054 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCAAGAAAACGTGCCCTAACGTGCTGGGTTT
1 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
* *
29649119 CGATTTCTCGTTTGACCCAAATAGCCAAATACCCTTTTAAAA
66 CGATTTCTCATTTGA-CCAAATAGCCAAATATCCTTTTAAAA
* *
29649161 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGGATTT
1 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
* *
29649226 CGATTTCTCATTTGACCAAATAGCTAAATATCCTCTTAA
66 CGATTTCTCATTTGACCAAATAGCCAAATATCCTTTTAA
29649265 GTTTTAATCC
Statistics
Matches: 197, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
106 98 0.50
107 99 0.50
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (106 bp):
TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
CGATTTCTCATTTGACCAAATAGCCAAATATCCTTTTAAAA
Found at i:29659969 original size:21 final size:23
Alignment explanation
Indices: 29659944--29659986 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
29659934 CAAGCTTTGC
29659944 TCTCAAT-AAATTTTC-ATCTTA
1 TCTCAATAAAATTTTCTATCTTA
*
29659965 TCTCAGTAAAATTTTCTATCTT
1 TCTCAATAAAATTTTCTATCTT
29659987 GATTAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.30, C:0.19, G:0.02, T:0.49
Consensus pattern (23 bp):
TCTCAATAAAATTTTCTATCTTA
Found at i:29660714 original size:128 final size:128
Alignment explanation
Indices: 29660494--29661379 Score: 1333
Period size: 128 Copynumber: 6.9 Consensus size: 128
29660484 CAAAGAAGCC
* * * * * *
29660494 AATCTTATCTCCCTAAATTTGCAGTGGAGTGTATTAAAACCACAGATTTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* * *
29660559 CAGTAAAGCAGATCGCATCAAGTCTTATCTCCCAAAGCAGTAGTGGAGCAGACAAAAGAAAAG
66 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAAG
* *
29660622 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* * * **
29660687 CAGTAGAGTAGATCGCATCAAGCCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACC
66 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAAG
* ***
29660750 AAT-CTCATCTCTCTGAAGTTGCAGTGGAATAGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 AATCCT-ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * * * *
29660814 ACAGTAGAGCAGATCGCGTCAAGTCTTATCTCCCAAAACAGTAGTGGAGCAAATGAAAGAAAAG
65 GCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAAG
**
29660878 AATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
**
29660943 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAATC
66 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAAG
* * * * * *
29661006 AATCCCATCTTCCTGAAGTTGCAGTGGAACGAATTAAAACCACAGATATTATCTCTCTAAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* * * * *
29661071 CAATAGAGCAGATCGCATCAAGTCTTATCTCCCAAAGCAGTAGTAGAGGAGACGAAATAAAAG
66 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAAG
**
29661134 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* * *
29661199 CAGTAGAGCAGGTTGCATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACGAAAGAAAAG
66 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAAG
*
29661262 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
29661327 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
66 CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
29661380 TAAAACCACA
Statistics
Matches: 678, Mismatches: 78, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
127 2 0.00
128 674 0.99
129 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (128 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
CAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAAG
Found at i:29660991 original size:84 final size:86
Alignment explanation
Indices: 29660627--29661250 Score: 261
Period size: 84 Copynumber: 7.3 Consensus size: 86
29660617 AAAAGAATCC
* * *
29660627 TATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTAGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
29660692 GAGTAGATCGCATCAAG-CCT
66 GAGCAGATCGAATCAAGATCT
* * * *
29660712 TATCTCCCT-AAGCAGTAGTGGAGCAGATGAAAGA-AACCA-ATCTCATCTCTCTGAAGTTGCAG
1 TATCTCCCTGAAGTAGTAGTGGAGCAGATTAAA-ACCA-CAGATCTTATCTCTCTGAAGTTGCAG
* ** ** *
29660774 TGGAATAGATTAAAACCACAGATCT
64 TAGAGCAGA-TCGAATCA-AGATCT
* * * ***** ** *** *
29660799 TATCTCTCTGAAGTTA-CAGTAGAGCAGA-TCGCGTCA-AG-TCTTATCTC-CCAAAACAGTAGT
1 TATCTCCCTGAAG-TAGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGT
* * ** *
29660859 GGAGCAAAT-GAAAGAAAAGAATCC
65 AGAGCAGATCG-AA-TCAAG-ATCT
*
29660883 TATCTCCCTGAAGTTA-TAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGT
1 TATCTCCCTGAAG-TAGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGT
*
29660947 AGAGCAGATCGCATCAAG-TCT
65 AGAGCAGATCGAATCAAGATCT
* ** * **
29660968 TATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAGA-AATCA-ATCCCATCT-TCCTGAAGTTGCA
1 TATCTCCCTGAAGTAGTAGTGGAGCAGATTAAA-ACCA-CAGATCTTATCTCT-CTGAAGTTGCA
* * ** * *
29661029 GTGGAAC-GAATTAAAACCACAGATAT
63 GTAGAGCAG-A-TCGAATCA-AGATCT
* * * * * * *** * ** ** *
29661055 TATCTCTCTAAAGTTGCAATAGAGCAGA-TCGCATCA-AG-TCTTATCTC-CCAAAGCAGTAGTA
1 TATCTCCCTGAAGTAGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
29661116 GAGGAGA-CGAAATAAAAGAATCC
66 GAGCAGATCG-AAT-CAAG-ATCT
* * *
29661139 TATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTAGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
29661204 GAGCAGGTTGCATCAAG-TCT
66 GAGCAGATCGAATCAAGATCT
29661224 TATCTCCCT-AAGTAGTAGTGGAGCAGA
1 TATCTCCCTGAAGTAGTAGTGGAGCAGA
29661251 CGAAAGAAAA
Statistics
Matches: 379, Mismatches: 122, Indels: 77
0.66 0.21 0.13
Matches are distributed among these distances:
83 12 0.03
84 183 0.48
85 69 0.18
86 9 0.02
87 46 0.12
88 57 0.15
89 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (86 bp):
TATCTCCCTGAAGTAGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGCAGATCGAATCAAGATCT
Found at i:29661384 original size:84 final size:86
Alignment explanation
Indices: 29660528--29661394 Score: 217
Period size: 84 Copynumber: 10.2 Consensus size: 86
29660518 TGGAGTGTAT
* * * * *
29660528 TAAAACCACAGATTTTATCTCTCTGAAGTTGCAGTAAAGCAGATCGCATCAAG-TCTTATCTCCC
1 TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGAATCAAGATCTTATCTCCC
* * *
29660592 -AAAGCAGTAGTGGAGCAGAC
66 TGAAGCAGCAGTAGAGCAGAC
** * * * * * ** *
29660612 -AAAAGAAAAGAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCT
1 TAAAACCACAG-ATCTTATCTCCCTAAAGTTGCAGTAGAGCAGA-TCGAATCA-AGATCTTATCT
* ** *
29660676 CTCTGAAGTTGCAGTAGAGTAGA-
63 CCCTGAAGCAGCAGTAGAGCAGAC
*** * * ** * * ** * *
29660699 TCGCATCA-AG-CCTTATCTCCCT-AAGCAGTAGTGGAGCAGAT-GAAAGAAACCAATCTCATCT
1 TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCG-AATCAA--GATCTTATCT
* ** * ** *
29660760 CTCTGAAGTTGCAGTGGAATAGAT
63 CCCTGAAGCAGCAGTAGAGCAGAC
* * * **
29660784 TAAAACCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCGTCAAG-TCTTATCTCCC
1 TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGAATCAAGATCTTATCTCCC
* * * * *
29660848 -AAAACAGTAGTGGAGCA-AA
66 TGAAGCAGCAGTAGAGCAGAC
* ** * * * ** * * ** *
29660867 TGAAAGAAAAGAATCCTATCTCCCTGAAGTTATAGTGGAGCGGATTAAAACCACAGATCTTATCT
1 TAAAACCACAG-ATCTTATCTCCCTAAAGTTGCAGTAGAGCAGA-TCGAATCA-AGATCTTATCT
* **
29660932 CTCTGAAGTTGCAGTAGAGCAGA-
63 CCCTGAAGCAGCAGTAGAGCAGAC
*** * ** * * ** *
29660955 TCGCATCA-AG-TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-CGAAAGAA-ATCAATCCCATC
1 TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGAATCAAGATC--T--TATC
* ** * * *
29661015 TTCCTGAAGTTGCAGTGGAAC-GAAT
62 TCCCTGAAGCAGCAGTAGAGCAG-AC
* * * *
29661040 TAAAACCACAGATATTATCTCTCTAAAGTTGCAATAGAGCAGATCGCATCAAG-TCTTATCTCCC
1 TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGAATCAAGATCTTATCTCCC
* * *
29661104 -AAAGCAGTAGTAGAGGAGAC
66 TGAAGCAGCAGTAGAGCAGAC
* * * * * * ** *
29661124 GAAATA--AAAGAATCCTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCACAGATCTTATC
1 TAAA-ACCACAG-ATCTTATCTCCCTAAAGTTGCAGTAGAGCAGA-TCGAATCA-AGATCTTATC
* ** *
29661187 TCTCTGAAGTTGCAGTAGAGCAG-G
62 TCCCTGAAGCAGCAGTAGAGCAGAC
*** * * * * ** *
29661211 TTGCATCA-AG-TCTTATCTCCCT-AAGTAGTAGTGGAGCAGA-CGAAAGAAAAGAATCCTATCT
1 TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCG-AA-TCAAG-ATCTTATCT
** * * *
29661272 CCCTGAAGTTGCAGTGGAGCGGAT
63 CCCTGAAGCAGCAGTAGAGCAGAC
* *
29661296 TAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCAAG-TCTTATCTCCC
1 TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGAATCAAGATCTTATCTCCC
* *
29661360 T-AAGCAGTAGTGGAGCAGAC
66 TGAAGCAGCAGTAGAGCAGAC
*
29661380 TAAAACCACAAATCT
1 TAAAACCACAGATCT
29661395 CAACCCCATG
Statistics
Matches: 551, Mismatches: 184, Indels: 96
0.66 0.22 0.12
Matches are distributed among these distances:
80 3 0.01
81 1 0.00
82 5 0.01
83 27 0.05
84 249 0.45
85 83 0.15
86 13 0.02
87 71 0.13
88 88 0.16
89 11 0.02
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (86 bp):
TAAAACCACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGAATCAAGATCTTATCTCCC
TGAAGCAGCAGTAGAGCAGAC
Found at i:29662144 original size:17 final size:17
Alignment explanation
Indices: 29662101--29662138 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
29662091 CTTTTTGATC
29662101 TATTTATTTATTTGTTT
1 TATTTATTTATTTGTTT
29662118 TATTTATTTATTTG-TT
1 TATTTATTTATTTGTTT
29662134 TATTT
1 TATTT
29662139 TTTTTACGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (17 bp):
TATTTATTTATTTGTTT
Found at i:29663124 original size:15 final size:15
Alignment explanation
Indices: 29663106--29663136 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
29663096 AAATTTAAAT
29663106 TTATTATTATGGTTG
1 TTATTATTATGGTTG
*
29663121 TTATTATTATTGTTG
1 TTATTATTATGGTTG
29663136 T
1 T
29663137 AATATTGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (15 bp):
TTATTATTATGGTTG
Found at i:29663629 original size:108 final size:106
Alignment explanation
Indices: 29663387--29663704 Score: 456
Period size: 108 Copynumber: 3.0 Consensus size: 106
29663377 TAAAGAAAGG
* * *
29663387 TTTTAAAATAAGGCAATATTTTACGTTTAGAAATTTGAGAAAACGTGCCCTAACGTGCTGGGTTT
1 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
* * *
29663452 CGATTTCTCGTTTGACCAAATAGCCAAGTATCCTTCTAAAA
66 CGATTTCTCATTTGACCAAATAGCCAAATATCCTTTTAAAA
* * *
29663493 TTTTAAAATAAGGTAATATTTTGCGTTTGGAAATTCGAGAAAATGTGCCCTAACGTGTTGGGTTT
1 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
* * * *
29663558 TGATTTCTCTTTTTTACCCAAATAGCCAAATACCCTTTTAAAA
66 CGATTTCTC-ATTTGA-CCAAATAGCCAAATATCCTTTTAAAA
* * *
29663601 TTTTAAAATAAGGCAATATTTTGTGTTTGGAAATTCGAGAAAACCTGGCCTAACGTGCTGGGTTT
1 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
* *
29663666 CGATTTCTCATTTGACCAAATAGCTAAATATCCTCTTAA
66 CGATTTCTCATTTGACCAAATAGCCAAATATCCTTTTAA
29663705 GTTTTAATCC
Statistics
Matches: 186, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
106 88 0.47
107 8 0.04
108 90 0.48
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (106 bp):
TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTT
CGATTTCTCATTTGACCAAATAGCCAAATATCCTTTTAAAA
Found at i:29671946 original size:11 final size:11
Alignment explanation
Indices: 29671930--29671971 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
29671920 TTGTAGATTC
29671930 AAAAAAAATCG
1 AAAAAAAATCG
29671941 AAAAAAAATCG
1 AAAAAAAATCG
*
29671952 AAAAAAAAATTG
1 -AAAAAAAATCG
29671964 AAAAAAAA
1 AAAAAAAA
29671972 AATTTGCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.79, C:0.05, G:0.07, T:0.10
Consensus pattern (11 bp):
AAAAAAAATCG
Found at i:29671947 original size:12 final size:12
Alignment explanation
Indices: 29671930--29671972 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
29671920 TTGTAGATTC
29671930 AAAAAAAATCG-
1 AAAAAAAATCGA
29671941 AAAAAAAATCGA
1 AAAAAAAATCGA
*
29671953 AAAAAAAATTGA
1 AAAAAAAATCGA
29671965 AAAAAAAA
1 AAAAAAAA
29671973 ATTTGCATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 11 0.37
12 19 0.63
ACGTcount: A:0.79, C:0.05, G:0.07, T:0.09
Consensus pattern (12 bp):
AAAAAAAATCGA
Found at i:29682339 original size:22 final size:22
Alignment explanation
Indices: 29682313--29682356 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
29682303 ATTGTCTTAA
29682313 GTTGCTACCATTTTATTATTAT
1 GTTGCTACCATTTTATTATTAT
* *
29682335 GTTGCTACTATTTTGTTATTAT
1 GTTGCTACCATTTTATTATTAT
29682357 TGTTTGGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (22 bp):
GTTGCTACCATTTTATTATTAT
Found at i:29682425 original size:30 final size:30
Alignment explanation
Indices: 29682389--29682447 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
29682379 TATTTTATTG
29682389 TTAATTTTGTTATTATTTTAAAGGCATTTC
1 TTAATTTTGTTATTATTTTAAAGGCATTTC
29682419 TTAATTTTGTTATTATTTTAAAGGCATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
29682448 AATTGTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTC
Found at i:29685214 original size:25 final size:25
Alignment explanation
Indices: 29685166--29685224 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
29685156 GATATACATA
29685166 ATATACAAAATAAAAAAATGTAATAT
1 ATATA-AAAATAAAAAAATGTAATAT
*
29685192 ATATAAAAATAGAAGAAAT-TAATAT
1 ATATAAAAATA-AAAAAATGTAATAT
*
29685217 -TAAAAAAA
1 ATATAAAAA
29685225 AGGTCCGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.23
25 12 0.40
26 11 0.37
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (25 bp):
ATATAAAAATAAAAAAATGTAATAT
Found at i:29689601 original size:48 final size:50
Alignment explanation
Indices: 29689549--29689674 Score: 148
Period size: 50 Copynumber: 2.6 Consensus size: 50
29689539 TCACAGTATG
* * *
29689549 AGTTGATGGAAGTTTGATGACTGAGATGAT-AAA-ACATTTATCTACACA
1 AGTTGATGGAAGTTTGATGACTGAAATGATGAAACAAATCTATCTACACA
* * * * * *
29689597 AGTTGATGGAAGCTTGATGATTGAAATGATGAAACAAATCTCTTTGCATA
1 AGTTGATGGAAGTTTGATGACTGAAATGATGAAACAAATCTATCTACACA
*
29689647 AGTTGATGGAAGTTTGATGACTAAAATG
1 AGTTGATGGAAGTTTGATGACTGAAATG
29689675 TTAACTAGTC
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 27 0.42
49 3 0.05
50 34 0.53
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.32
Consensus pattern (50 bp):
AGTTGATGGAAGTTTGATGACTGAAATGATGAAACAAATCTATCTACACA
Found at i:29699141 original size:47 final size:47
Alignment explanation
Indices: 29699072--29699165 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
29699062 TCCGAAAAGT
*
29699072 TAGATTTTTAGGACACATTGTTTCGGCAGAAGGCATTAGAGTTGATC
1 TAGATTTTTAGGACACATTGTTTCGGCAGAAGGCATCAGAGTTGATC
*
29699119 TAGATTTTTAGGACACATTGTTTCGGCAGAAGGCATCGGAGTTGATC
1 TAGATTTTTAGGACACATTGTTTCGGCAGAAGGCATCAGAGTTGATC
29699166 CAAGCAAGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (47 bp):
TAGATTTTTAGGACACATTGTTTCGGCAGAAGGCATCAGAGTTGATC
Found at i:29701178 original size:15 final size:16
Alignment explanation
Indices: 29701158--29701187 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
29701148 TCAATCATCG
29701158 TATTTTT-AGCTTTTT
1 TATTTTTCAGCTTTTT
29701173 TATTTTTCAGCTTTT
1 TATTTTTCAGCTTTT
29701188 GCCGATTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (16 bp):
TATTTTTCAGCTTTTT
Found at i:29712715 original size:21 final size:20
Alignment explanation
Indices: 29712691--29712754 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
29712681 ACGAAAGCTC
29712691 TAAACGAACAGATCTGAAAAT
1 TAAACGAACAGATCT-AAAAT
* *
29712712 TAAAAC-AA-AGAAC-AAGAT
1 T-AAACGAACAGATCTAAAAT
29712730 TAAACGAATCAGATCTAAAAT
1 TAAACGAA-CAGATCTAAAAT
29712751 TAAA
1 TAAA
29712755 TCCCCAAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 4 0.12
18 7 0.21
20 8 0.24
21 11 0.32
22 4 0.12
ACGTcount: A:0.58, C:0.12, G:0.11, T:0.19
Consensus pattern (20 bp):
TAAACGAACAGATCTAAAAT
Found at i:29718056 original size:20 final size:21
Alignment explanation
Indices: 29718031--29718069 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
29718021 TTCGAAAGTG
*
29718031 AAAAG-AAGGAAAATGAGAGC
1 AAAAGAAAAGAAAATGAGAGC
29718051 AAAAGAAAAGAAAATGAGA
1 AAAAGAAAAGAAAATGAGA
29718070 AAAGTGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.67, C:0.03, G:0.26, T:0.05
Consensus pattern (21 bp):
AAAAGAAAAGAAAATGAGAGC
Found at i:29726036 original size:23 final size:23
Alignment explanation
Indices: 29726006--29726059 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
29725996 AATAGGAAAC
*
29726006 TTAAATTTCCAATTTTTTTTGTT
1 TTAAATTTCCAATTTGTTTTGTT
29726029 TTAAATTTCCAATTTGTTTTGTT
1 TTAAATTTCCAATTTGTTTTGTT
29726052 TT-AATTTC
1 TTAAATTTC
29726060 AAATAAATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 6 0.20
23 24 0.80
ACGTcount: A:0.22, C:0.09, G:0.06, T:0.63
Consensus pattern (23 bp):
TTAAATTTCCAATTTGTTTTGTT
Found at i:29730948 original size:20 final size:20
Alignment explanation
Indices: 29730923--29730963 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
29730913 ACCCAAAGAA
29730923 CATATTTTTAAGTTTATGTT
1 CATATTTTTAAGTTTATGTT
29730943 CATATTTTTAAGTTTATGTT
1 CATATTTTTAAGTTTATGTT
29730963 C
1 C
29730964 CTGAGCCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.07, G:0.10, T:0.59
Consensus pattern (20 bp):
CATATTTTTAAGTTTATGTT
Found at i:29732584 original size:38 final size:39
Alignment explanation
Indices: 29732528--29732613 Score: 120
Period size: 38 Copynumber: 2.2 Consensus size: 39
29732518 AGTACATCAT
* *
29732528 CAACAGAAGCTCATAAGAGCTAGTCCTCCCGAAT-ACGC
1 CAACAGAAGCTCATAAGAGCTAATCCACCCGAATCACGC
* *
29732566 CAACGGAAGCTCGTAAGAGCTAATCCACCCGAATCACGC
1 CAACAGAAGCTCATAAGAGCTAATCCACCCGAATCACGC
29732605 CAAACAGAA
1 C-AACAGAA
29732614 AGTGTAACAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
38 30 0.73
39 5 0.12
40 6 0.15
ACGTcount: A:0.37, C:0.31, G:0.19, T:0.13
Consensus pattern (39 bp):
CAACAGAAGCTCATAAGAGCTAATCCACCCGAATCACGC
Found at i:29735309 original size:20 final size:20
Alignment explanation
Indices: 29735257--29735309 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
29735247 AGTAACCCCT
29735257 AAAATTA-TATAAA-AATAAA
1 AAAATTACT-TAAATAATAAA
* **
29735276 AAAATAACCCAAATAATAAA
1 AAAATTACTTAAATAATAAA
29735296 AAAATTACTTAAAT
1 AAAATTACTTAAAT
29735310 GAAAATTTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAATTACTTAAATAATAAA
Found at i:29736521 original size:20 final size:21
Alignment explanation
Indices: 29736480--29736523 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
29736470 CACGCTATCT
*
29736480 AATTTAATTAAATTAGATAAA
1 AATTTAATTAAATTAAATAAA
*
29736501 AATTTATTTAAA-TAAATAAA
1 AATTTAATTAAATTAAATAAA
29736521 AAT
1 AAT
29736524 AAAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTAATTAAATTAAATAAA
Found at i:29736532 original size:17 final size:17
Alignment explanation
Indices: 29736510--29736545 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
29736500 AAATTTATTT
29736510 AAATAAATAAAAATAAA
1 AAATAAATAAAAATAAA
*
29736527 AAATAAATAAAGATAAA
1 AAATAAATAAAAATAAA
29736544 AA
1 AA
29736546 TTAGCACGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (17 bp):
AAATAAATAAAAATAAA
Found at i:29737779 original size:17 final size:16
Alignment explanation
Indices: 29737739--29737780 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 16
29737729 TTGAATGAGT
*
29737739 AAACAAATAAATTATA
1 AAACAAATAAATAATA
29737755 AAAC--ATAAATAATTA
1 AAACAAATAAATAA-TA
29737770 AAACAAATAAA
1 AAACAAATAAA
29737781 ACTTAGTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 7 0.32
15 6 0.27
16 4 0.18
17 5 0.23
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (16 bp):
AAACAAATAAATAATA
Found at i:29740774 original size:18 final size:17
Alignment explanation
Indices: 29740751--29740812 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 17
29740741 ATTTCGTTTG
29740751 TTTA-TTTTTCTTTATTTA
1 TTTATTTTTTC-TT-TTTA
29740769 TTTATTTATTTCTTTTTA
1 TTTATTT-TTTCTTTTTA
*
29740787 TTTATTTTATTCCTTTTA
1 TTTATTTT-TTCTTTTTA
29740805 TTTATTTT
1 TTTATTTT
29740813 ATGGTTTATC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
17 1 0.03
18 31 0.77
19 4 0.10
20 4 0.10
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTATTTTTTCTTTTTA
Found at i:29740779 original size:22 final size:22
Alignment explanation
Indices: 29740751--29740793 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
29740741 ATTTCGTTTG
29740751 TTTATTT-TTCTTTATTTATTTA
1 TTTATTTCTT-TTTATTTATTTA
29740773 TTTATTTCTTTTTATTTATTT
1 TTTATTTCTTTTTATTTATTT
29740794 TATTCCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTATTTCTTTTTATTTATTTA
Found at i:29740813 original size:18 final size:18
Alignment explanation
Indices: 29740765--29740814 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
29740755 TTTTTCTTTA
*
29740765 TTTATTTA-TTTATTTCTT
1 TTTATTTATTTTA-TTCCT
29740783 TTTATTTATTTTATTCCT
1 TTTATTTATTTTATTCCT
29740801 TTTATTTATTTTAT
1 TTTATTTATTTTAT
29740815 GGTTTATCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 26 0.87
19 4 0.13
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATTTATTTTATTCCT
Found at i:29742745 original size:6 final size:6
Alignment explanation
Indices: 29742727--29742758 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
29742717 TGCAAATGGA
29742727 TCATTT CTCATTT TCATTT TCATTT TCATTT T
1 TCATTT -TCATTT TCATTT TCATTT TCATTT T
29742759 TGAGAAACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.66
Consensus pattern (6 bp):
TCATTT
Found at i:29747439 original size:24 final size:25
Alignment explanation
Indices: 29747412--29747469 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
29747402 GAAAATGAGC
*
29747412 TTAAAATAACTAATATA-AATTGA-T
1 TTAAAATAAATAATATAGAA-TGATT
* *
29747436 TTAAAGTAAATAGTATAGAATGATT
1 TTAAAATAAATAATATAGAATGATT
29747461 TTAAAATAA
1 TTAAAATAA
29747470 TTATTACATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 17 0.61
25 11 0.39
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (25 bp):
TTAAAATAAATAATATAGAATGATT
Found at i:29749432 original size:131 final size:132
Alignment explanation
Indices: 29749196--29749443 Score: 340
Period size: 131 Copynumber: 1.9 Consensus size: 132
29749186 AATCTAGTTT
* * * * *
29749196 CCTACTACCTTGGGAAAATAAGATTCACCATCTTCGATTTGCTGCACTACTTCTTAGGGAGATAA
1 CCTACTACCTTGGGAAAATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAA
* * *
29749261 GGTCTACAATATTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTTCT
66 GATCTACAAGATTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAAATCTTCT
29749326 TC
131 TC
* ** *
29749328 CCTACTACCTTGGGAAGATAAAATTTGCCGTCTTCGATCTGC-CCACTACTGCTTAAGGA-A-AC
1 CCTACTACCTTGGGAAAATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATA-
*
29749390 AGAATCTACAAGCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTG
65 AG-ATCTACAAGATTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTG
29749444 TCTTCGATCT
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
129 1 0.01
130 3 0.03
131 61 0.60
132 36 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
CCTACTACCTTGGGAAAATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAA
GATCTACAAGATTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAAATCTTCT
TC
Found at i:29749493 original size:131 final size:131
Alignment explanation
Indices: 29749263--29749498 Score: 285
Period size: 131 Copynumber: 1.8 Consensus size: 131
29749253 GGAGATAAGG
* * *
29749263 TCTACAATATTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTTCTTC
1 TCTACAAGATTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAAATCTACTTC
* ** * * *
29749328 CCTACTACCTTGGGAAGATAAAATTTGCCGTCTTCGATCTGCCCACTACTGCTTAAGGAAACAGA
66 CATACTACCTCAGGAAGACAAAATCTGCCATCTTCGATCTGCCCACTACTGCTTAAGGAAACAGA
29749393 A
131 A
* * ** *
29749394 TCTACAAGCTTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGTCTTCGATCTACTTT
1 TCTACAAGATTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAAATCTACTTC
* * * * *
29749459 GATGCTA-GTACAGGAAGACAAGATCTGCTATCTTCGATCT
66 CATACTACCT-CAGGAAGACAAAATCTGCCATCTTCGATCT
29749499 ACTTTGCTGC
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
130 1 0.01
131 84 0.99
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (131 bp):
TCTACAAGATTCAACCTACTCCACTGCTGCTCAAGGAGATAGGACTGGTGGCTTAAATCTACTTC
CATACTACCTCAGGAAGACAAAATCTGCCATCTTCGATCTGCCCACTACTGCTTAAGGAAACAGA
A
Found at i:29749495 original size:45 final size:45
Alignment explanation
Indices: 29749444--29749940 Score: 726
Period size: 45 Copynumber: 11.0 Consensus size: 45
29749434 AGGACTGGTG
* * * *
29749444 TCTTCGATCTACTTTGATGCTAGTACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
29749489 TCTTCGATCTACTTTGCTGCCAATACATGAAGACAAGACCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* ** *
29749534 TCTTTGATCTACTTCGCTGCCAATGTAGGAAGACAAGATCTACTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
29749579 TCTTCGATCTACTTCACTACCAATACAGGAAGACAAGAGT-TGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGA-TCTGCTA
* *
29749624 TCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
29749669 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
29749714 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAAATATGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
*
29749759 TCTTCGATCTACTTCGCTGCCAATGCAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
29749804 TCTTCGATCTACTTCGCTACCAATACAAGAAGATAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
29749849 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCCGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
**
29749894 TCTTCGATCTACTTCGCTGCCAATACAAAAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
29749939 TC
1 TC
29749941 CTTTCTTTTC
Statistics
Matches: 404, Mismatches: 46, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
44 1 0.00
45 402 1.00
46 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (45 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
Found at i:29751272 original size:46 final size:45
Alignment explanation
Indices: 29751206--29751297 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 45
29751196 TCCATTTTTA
* *
29751206 CTTTTTTTTGGACTCAAAGTGCCCTTTGTGGCTTTTTACCTTGGT
1 CTTTTTTTTGGACTCAAAGTGCCCTTTGCGGCTTTTCACCTTGGT
*
29751251 CTTTTTTTTAGGACTCAAAGTGCCCTTTGCGGGTTTTCACCTTGGT
1 CTTTTTTTT-GGACTCAAAGTGCCCTTTGCGGCTTTTCACCTTGGT
29751297 C
1 C
29751298 CCTTCTCTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
45 9 0.21
46 34 0.79
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.46
Consensus pattern (45 bp):
CTTTTTTTTGGACTCAAAGTGCCCTTTGCGGCTTTTCACCTTGGT
Found at i:29752196 original size:5 final size:5
Alignment explanation
Indices: 29752186--29752224 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
29752176 GGCCTCTCCA
29752186 TTTTC TTTTC TTTTC TTTT- TTTTCC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTT-C TTTTC TTTTC TTTT
29752225 TCCATCATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.12
5 24 0.75
6 4 0.12
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:29752215 original size:20 final size:19
Alignment explanation
Indices: 29752186--29752225 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
29752176 GGCCTCTCCA
29752186 TTTTCTTTTCTTTTCTTTT
1 TTTTCTTTTCTTTTCTTTT
29752205 TTTTCCTTTTCTTTTCTTTT
1 TTTT-CTTTTCTTTTCTTTT
29752225 T
1 T
29752226 CCATCATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTCTTTTCTTTTCTTTT
Found at i:29756013 original size:24 final size:25
Alignment explanation
Indices: 29755986--29756043 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
29755976 GAAAATGAGC
*
29755986 TTAAAATAACTAATATA-AATTGA-T
1 TTAAAATAAATAATATAGAA-TGATT
* *
29756010 TTAAAGTAAATAGTATAGAATGATT
1 TTAAAATAAATAATATAGAATGATT
29756035 TTAAAATAA
1 TTAAAATAA
29756044 TTATTATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 17 0.61
25 11 0.39
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (25 bp):
TTAAAATAAATAATATAGAATGATT
Found at i:29756259 original size:14 final size:15
Alignment explanation
Indices: 29756225--29756262 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
29756215 AATAGTAGCT
*
29756225 TAATAATAACAAGAA
1 TAATATTAACAAGAA
*
29756240 TAATATTAACAA-AC
1 TAATATTAACAAGAA
29756254 TAATATTAA
1 TAATATTAA
29756263 ACTTAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (15 bp):
TAATATTAACAAGAA
Found at i:29757742 original size:72 final size:72
Alignment explanation
Indices: 29757664--29757801 Score: 231
Period size: 72 Copynumber: 1.9 Consensus size: 72
29757654 TGCTCCTAAT
* * *
29757664 CAATCACTTGTATTTCTATAAGCTCAAGCACATAAAACACAAGAAAAATCAAAGAAAATGTAAAA
1 CAATCACTTGTATTTCTACAAGCTCAAGCACACAAAACAAAAGAAAAATCAAAGAAAATGTAAAA
29757729 AATTAAC
66 AATTAAC
* *
29757736 CAATCACTTGTATTTCTACAAGCTCAAGCACACAAAAGAAAAGAAAAATCAATGAAAATGTAAAA
1 CAATCACTTGTATTTCTACAAGCTCAAGCACACAAAACAAAAGAAAAATCAAAGAAAATGTAAAA
29757801 A
66 A
29757802 TTTGAAGCAA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.53, C:0.17, G:0.09, T:0.21
Consensus pattern (72 bp):
CAATCACTTGTATTTCTACAAGCTCAAGCACACAAAACAAAAGAAAAATCAAAGAAAATGTAAAA
AATTAAC
Found at i:29762388 original size:23 final size:22
Alignment explanation
Indices: 29762358--29762411 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
29762348 AGATCTCTTG
29762358 AAAA-AAAACAAAGAACAA-AGTA
1 AAAATAAAACAAAGAA-AAGAG-A
* *
29762380 AAACTAAAACTAAGAAAAGAGA
1 AAAATAAAACAAAGAAAAGAGA
29762402 AAAATAAAAC
1 AAAATAAAAC
29762412 TTAATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.07
Consensus pattern (22 bp):
AAAATAAAACAAAGAAAAGAGA
Found at i:29763482 original size:128 final size:128
Alignment explanation
Indices: 29763249--29763485 Score: 327
Period size: 128 Copynumber: 1.9 Consensus size: 128
29763239 AAAAATCTCA
29763249 ATATCAGAATTTGCAACGTTTCAAAATATTATATCAACAGGTTTTCTAAGAAAAAGTATCAAATT
1 ATATCAGAATTTGCAACGTTTCAAAATATTATATCAACAGGTTTTCTAAGAAAAAGTATCAAATT
* * *
29763314 ATTCATATATTTTAGTAAAAGAGCATTCCCATCGGAAAATCTCCATTGAGATGAAGAATTTCG
66 ATTCATATAATTTAGTAAAAGAGAATTCCCACCGGAAAATCTCCATTGAGATGAAGAATTTCG
* * * * * * *
29763377 ATATCAGAATTTGTGAA-GTTTTAAAATGTTATA-CTAAGAGGTTTTCTGATAAATAGTATCAAA
1 ATATCAGAATTTG-CAACGTTTCAAAATATTATATC-AACAGGTTTTCTAAGAAAAAGTATCAAA
*
29763440 TTATTCATATAATTTCGTAAAAGAGAATTCCCACCAGG-AAATCTCC
64 TTATTCATATAATTTAGTAAAAGAGAATTCCCACC-GGAAAATCTCC
29763486 TTTAGTTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
127 1 0.01
128 90 0.95
129 4 0.04
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (128 bp):
ATATCAGAATTTGCAACGTTTCAAAATATTATATCAACAGGTTTTCTAAGAAAAAGTATCAAATT
ATTCATATAATTTAGTAAAAGAGAATTCCCACCGGAAAATCTCCATTGAGATGAAGAATTTCG
Found at i:29763667 original size:120 final size:120
Alignment explanation
Indices: 29763507--29763747 Score: 401
Period size: 120 Copynumber: 2.0 Consensus size: 120
29763497 AAGATGAAGG
*
29763507 ATTTCATTAAATTAGGCTATAGACTATATTGCAAGAAAATTCAAATTGAGTGGTTAATTGTATAA
1 ATTTCATTAAATTAGGCTATAGACTATATTGCAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
* * *
29763572 AGTATTGATTTTTAGTAAGGAAAGAAGGAAAGGGTTTATGAGGTTATTTTACCCA
66 AGTATTGATTTTTAGTAAGAAAAGAAAGAAAGGGTTTATGAGGTAATTTTACCCA
* * *
29763627 ATTTTATTAAATTAGGCTATGGACTATTTTGCAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
1 ATTTCATTAAATTAGGCTATAGACTATATTGCAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
* *
29763692 AGTATTGGTTTTTAGTAAGAAAAGAAAGAAAGGGTTTATGGGGTAATTTTACCCA
66 AGTATTGATTTTTAGTAAGAAAAGAAAGAAAGGGTTTATGAGGTAATTTTACCCA
29763747 A
1 A
29763748 GGTCTATTGT
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 112 1.00
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (120 bp):
ATTTCATTAAATTAGGCTATAGACTATATTGCAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
AGTATTGATTTTTAGTAAGAAAAGAAAGAAAGGGTTTATGAGGTAATTTTACCCA
Found at i:29769906 original size:13 final size:13
Alignment explanation
Indices: 29769816--29769907 Score: 62
Period size: 13 Copynumber: 7.0 Consensus size: 13
29769806 AAATGTGTGA
*
29769816 ATGAAATGTTTAG
1 ATGAAATGTTTAT
*
29769829 ATGAAATGGTTAT
1 ATGAAATGTTTAT
* *
29769842 ACGAAACGTTTAT
1 ATGAAATGTTTAT
* *
29769855 ATGGACATAG-ATAT
1 AT-GAAAT-GTTTAT
*
29769869 ATGAAACAG-TTAT
1 ATGAAA-TGTTTAT
*
29769882 ATGAAGTGTTTAT
1 ATGAAATGTTTAT
*
29769895 ATGAAATATTTAT
1 ATGAAATGTTTAT
29769908 TGGAATATAG
Statistics
Matches: 59, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
12 1 0.02
13 49 0.83
14 8 0.14
15 1 0.02
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.37
Consensus pattern (13 bp):
ATGAAATGTTTAT
Found at i:29780271 original size:27 final size:27
Alignment explanation
Indices: 29780241--29780418 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
29780231 ATATTGAGCC
* * *
29780241 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
29780268 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
29780295 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
29780323 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
29780350 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
29780377 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
29780404 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29780419 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:29780334 original size:55 final size:55
Alignment explanation
Indices: 29780241--29780418 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
29780231 ATATTGAGCC
* * *
29780241 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
29780295 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
29780350 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
29780404 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29780419 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:29780380 original size:82 final size:81
Alignment explanation
Indices: 29780262--29780417 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
29780252 TGCTATACAA
* * *
29780262 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
29780327 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
29780344 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
29780408 CACTTAGTGC
65 CACTTAGTGC
29780418 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:29788352 original size:27 final size:27
Alignment explanation
Indices: 29788322--29788499 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
29788312 ATATTGAGCC
* * *
29788322 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
29788349 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
29788376 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
29788404 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
29788431 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
29788458 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
29788485 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29788500 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:29788415 original size:55 final size:55
Alignment explanation
Indices: 29788322--29788499 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
29788312 ATATTGAGCC
* * *
29788322 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
29788376 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
29788431 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
29788485 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29788500 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:29788461 original size:82 final size:81
Alignment explanation
Indices: 29788343--29788498 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
29788333 TGCTATACAA
* * *
29788343 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
29788408 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
29788425 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
29788489 CACTTAGTGC
65 CACTTAGTGC
29788499 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:29791744 original size:76 final size:76
Alignment explanation
Indices: 29791583--29791745 Score: 179
Period size: 76 Copynumber: 2.1 Consensus size: 76
29791573 TAAAGGTATG
* *
29791583 AGGTTCGAATACAAATATGTATGTATATAATCAAGTTATTGAGTTGAGAATTAATGTATGAATTT
1 AGGTTCG-A-ACAAATATGTATGCATATAATCAAGTTATTGAGTTGAGAATTAAAGTATGAATTT
**
29791648 TATAATTATAGGG
64 TATAATTATAGAC
* * * * *
29791661 AGATTCGAACATATATGTATGCATTTAATTAAGTTATTGAGTTG-GAAATTAAAGTATG-TTTCT
1 AGGTTCGAACAAATATGTATGCATATAATCAAGTTATTGAGTTGAG-AATTAAAGTATGAATT-T
29791724 TAT-ATTCATAGAC
64 TATAATT-ATAGAC
29791737 AGGTTCGAA
1 AGGTTCGAA
29791746 TATAGAGATT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
75 6 0.08
76 59 0.82
77 1 0.01
78 6 0.08
ACGTcount: A:0.37, C:0.06, G:0.18, T:0.39
Consensus pattern (76 bp):
AGGTTCGAACAAATATGTATGCATATAATCAAGTTATTGAGTTGAGAATTAAAGTATGAATTTTA
TAATTATAGAC
Found at i:29792042 original size:41 final size:41
Alignment explanation
Indices: 29791940--29792034 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
29791930 GGCTTTGTGC
* *
29791940 CTAGCAGGCTTAACGCCGGTGAAATATTTCGGACTATACGT
1 CTAGCAGGCTTAACGCCGGTGAAAAATTTCAGACTATACGT
*
29791981 CTAGCAGGCTTAACGCCGGTGAAAAATTTCAGACTATATGT
1 CTAGCAGGCTTAACGCCGGTGAAAAATTTCAGACTATACGT
29792022 CTAGCAGGCTTAA
1 CTAGCAGGCTTAA
29792035 TGTCGGTGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (41 bp):
CTAGCAGGCTTAACGCCGGTGAAAAATTTCAGACTATACGT
Found at i:29794010 original size:34 final size:34
Alignment explanation
Indices: 29793945--29794027 Score: 82
Period size: 34 Copynumber: 2.5 Consensus size: 34
29793935 ATGTTAAGTT
* * *
29793945 TACATATATATATATATGGGTAGTATTGAATACG
1 TACAAATATATATGTATAGGTAGTATTGAATACG
* *
29793979 TACAAATATATATGTATAGTTAGT-TTCGAATAGG
1 TACAAATATATATGTATAGGTAGTATT-GAATACG
*
29794013 T--GAATATATATGTAT
1 TACAAATATATATGTAT
29794028 GTAAAATTCT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
32 13 0.31
33 2 0.05
34 27 0.64
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.40
Consensus pattern (34 bp):
TACAAATATATATGTATAGGTAGTATTGAATACG
Found at i:29794324 original size:41 final size:41
Alignment explanation
Indices: 29794279--29794423 Score: 218
Period size: 41 Copynumber: 3.5 Consensus size: 41
29794269 GACTTTAAGT
*
29794279 CTAGCAGGCGAAGTGCCGGTGATTTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGTTATAAAC
* * *
29794320 CTAGCTGGCTAAGTGCCAGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGTTATAAAC
* * * *
29794361 CTAGCAGGCTTAGTGCCGGTGATTGGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGTTATAAAC
29794402 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
29794424 ATATGTTAAA
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 92 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGTTATAAAC
Found at i:29802384 original size:20 final size:20
Alignment explanation
Indices: 29802359--29802397 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
29802349 TCGTTTATAA
29802359 AACAATA-AAACAATAAATAT
1 AACAATAGAAA-AATAAATAT
29802379 AACAATAGAAAAATAAATA
1 AACAATAGAAAAATAAATA
29802398 AATATTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.18
Consensus pattern (20 bp):
AACAATAGAAAAATAAATAT
Found at i:29803249 original size:44 final size:45
Alignment explanation
Indices: 29803201--29803316 Score: 128
Period size: 45 Copynumber: 2.6 Consensus size: 45
29803191 CTAATCCACT
* * * * *
29803201 CCACTACAACTTTAGAGAGATAGGATTTG-TTTATTTAGTCTGCC
1 CCACTGCAACTTTAGGGAGATAAGACTTGCTTTATTGAGTCTGCC
* * *
29803245 CCACTGCAA-TTTCAGGGGGATAAGACTTGCTTTCTTGAGTCTGCT
1 CCACTGCAACTTT-AGGGAGATAAGACTTGCTTTATTGAGTCTGCC
*
29803290 CCACTGCAACTTCAGGGAGATAAGACT
1 CCACTGCAACTTTAGGGAGATAAGACT
29803317 CAATGTGATC
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
43 3 0.05
44 20 0.34
45 34 0.58
46 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (45 bp):
CCACTGCAACTTTAGGGAGATAAGACTTGCTTTATTGAGTCTGCC
Done.