Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2874
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61823
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:6537 original size:29 final size:29
Alignment explanation
Indices: 6495--6554 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
6485 TCCAACATAT
6495 ATAAGCCATCATGCAAGTTACCATTGCCA
1 ATAAGCCATCATGCAAGTTACCATTGCCA
6524 ATAAGCCATCATGCAAGTTACCATTGCCA
1 ATAAGCCATCATGCAAGTTACCATTGCCA
6553 AT
1 AT
6555 CTTCCTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (29 bp):
ATAAGCCATCATGCAAGTTACCATTGCCA
Found at i:7536 original size:29 final size:29
Alignment explanation
Indices: 7503--7562 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
7493 CTTGAGAAGA
7503 CTGGATTGCTAAAGCATTCTTCGGAGCAT
1 CTGGATTGCTAAAGCATTCTTCGGAGCAT
7532 CTGGATTGCTAAAGCATTCTTCGGAGCAT
1 CTGGATTGCTAAAGCATTCTTCGGAGCAT
7561 CT
1 CT
7563 AACATGTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (29 bp):
CTGGATTGCTAAAGCATTCTTCGGAGCAT
Found at i:19115 original size:46 final size:46
Alignment explanation
Indices: 18978--19140 Score: 165
Period size: 46 Copynumber: 3.5 Consensus size: 46
18968 GTGCCACTGC
*
18978 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATA-CCGATG
* * * ** *
19023 CATGTCCCAGACAT-GTTTTACACTAGC-TTACGTCTCGAGGCTGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACT-CATCTC-ATACCGATG
* *
19069 CATATCTCAGACAT-GTCTTACACTAGCACTCATCTCAATACCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-ATACCGATG
19115 CCATGTCCCAGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
19141 GGCTCTAATA
Statistics
Matches: 93, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
44 9 0.10
45 15 0.16
46 45 0.48
47 14 0.15
48 10 0.11
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATACCGATG
Found at i:19174 original size:94 final size:94
Alignment explanation
Indices: 18926--19194 Score: 268
Period size: 94 Copynumber: 2.9 Consensus size: 94
18916 AGACATCGAC
* * * *
18926 GCCATGTCCCAGACATGGTCTTACACAAGTTCTAGTATAT-TTGTGCCACTGCCATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTA-ATGTGGT-CGA-TG-CATGTCCCAGAC
18990 ATGGTCTTACACT-G-ACACATCTCATAGCCGAT
62 AT-GTCTTACACTAGCACACATCTCATAGCCGAT
* * * * *
19022 G-CATGTCCCAGACAT-GTTTTACACTAGCT-TACGT-CTCGAGG-CTGATGCATATCTCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTA-GTAAT-GTGGTC-GATGCATGTCCCAGACA
*
19082 TGTCTTACACTAGCACTCATCTCAATA-CCGAT
63 TGTCTTACACTAGCACACATCTC-ATAGCCGAT
* *
19114 GCCATGTCCCAGACATGGTCTTACACTGGCTCTAATAATGTGGTCGATGCATGTCCCAGACATGT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTAATGTGGTCGATGCATGTCCCAGACATGT
* *
19179 CTTAAACTAGCTCACA
66 CTTACACTAGCACACA
19195 ATAACCTACA
Statistics
Matches: 141, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 18 0.13
93 20 0.14
94 61 0.43
95 18 0.13
96 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTAATGTGGTCGATGCATGTCCCAGACATGT
CTTACACTAGCACACATCTCATAGCCGAT
Found at i:22102 original size:68 final size:66
Alignment explanation
Indices: 22030--22201 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
22020 CATCATGTGT
* * * *
22030 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
22093 TGTAG
62 TGTAG
** * *
22098 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
22163 AG
65 AG
* * * *
22165 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
22202 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:22135 original size:64 final size:64
Alignment explanation
Indices: 22054--22236 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
22044 AGACATTATG
* * *
22054 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
22118 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
22183 AA
63 AA
* * *
22185 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
22237 TCGAACTCTA
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:23352 original size:21 final size:23
Alignment explanation
Indices: 23324--23371 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
23314 CATGACATGT
23324 ATATATATATATGACTAGTCTCA
1 ATATATATATATGACTAGTCTCA
23347 ATATATATATATGACTAGTCTCA
1 ATATATATATATGACTAGTCTCA
23370 AT
1 AT
23372 GTAATGCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (23 bp):
ATATATATATATGACTAGTCTCA
Found at i:27316 original size:39 final size:39
Alignment explanation
Indices: 27253--27371 Score: 184
Period size: 39 Copynumber: 3.0 Consensus size: 39
27243 TAGTTCATTT
* * *
27253 ACATGGTAATCACATTCACTTTTAAGCATATATCACATTAC
1 ACAT-GTAATCACA-TAACATTTAAGCATATATCACAATAC
27294 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
1 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
*
27333 ACATATAATCACATAACATTTAAGCATATATCACAATAC
1 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
27372 TCAAAAACAT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
39 61 0.82
40 9 0.12
41 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (39 bp):
ACATGTAATCACATAACATTTAAGCATATATCACAATAC
Found at i:27326 original size:22 final size:22
Alignment explanation
Indices: 27301--27367 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
27291 TACACATGTA
27301 ATCACATAACATTTAAGCATAT
1 ATCACATAACATTTAAGCATAT
27323 ATCAC---A-A--TACA-CATAT
1 ATCACATAACATTTA-AGCATAT
27339 AATCACATAACATTTAAGCATAT
1 -ATCACATAACATTTAAGCATAT
27362 ATCACA
1 ATCACA
27368 ATACTCAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 18
0.67 0.00 0.33
Matches are distributed among these distances:
16 7 0.19
17 6 0.17
18 1 0.03
19 1 0.03
20 1 0.03
21 1 0.03
22 12 0.33
23 7 0.19
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (22 bp):
ATCACATAACATTTAAGCATAT
Found at i:29572 original size:16 final size:18
Alignment explanation
Indices: 29548--29593 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 18
29538 GATATTTTTT
*
29548 TTCTTTTTCTTTTTC-C-
1 TTCTCTTTCTTTTTCTCA
*
29564 TTTTCTTTCTTTTTCTCA
1 TTCTCTTTCTTTTTCTCA
29582 TTCTCTTTCTTT
1 TTCTCTTTCTTT
29594 CCTTTCTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.52
17 1 0.04
18 11 0.44
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (18 bp):
TTCTCTTTCTTTTTCTCA
Found at i:29590 original size:22 final size:22
Alignment explanation
Indices: 29542--29594 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
29532 AATTAAGATA
* **
29542 TTTTTTTTCTTTTTCTTTTTCC
1 TTTTCTTTCTTTTTCTCATTCC
29564 TTTTCTTTCTTTTTCTCATT-C
1 TTTTCTTTCTTTTTCTCATTCC
29585 TCTTTCTTTC
1 T-TTTCTTTC
29595 CTTTCTTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTCTTTCTTTTTCTCATTCC
Found at i:32683 original size:24 final size:25
Alignment explanation
Indices: 32651--32703 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
32641 AAAAAGAAAG
32651 AGAAAAATTAAAAGGAAATGAG-AA
1 AGAAAAATTAAAAGGAAATGAGTAA
* * *
32675 AGAAAAATTGAAGGGGAATGAGTAA
1 AGAAAAATTAAAAGGAAATGAGTAA
32700 AGAA
1 AGAA
32704 GTTCTTCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.13
Consensus pattern (25 bp):
AGAAAAATTAAAAGGAAATGAGTAA
Found at i:34804 original size:39 final size:39
Alignment explanation
Indices: 34753--34832 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
34743 TGCATGTAGC
34753 TATAGGAATAAAATAGACAGTCCATAGCTGTAAACTATG
1 TATAGGAATAAAATAGACAGTCCATAGCTGTAAACTATG
34792 TATAGGAATAAAATAGACAGTCCATAGCTGTAAACTATG
1 TATAGGAATAAAATAGACAGTCCATAGCTGTAAACTATG
34831 TA
1 TA
34833 CTTTGCATGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.26
Consensus pattern (39 bp):
TATAGGAATAAAATAGACAGTCCATAGCTGTAAACTATG
Found at i:35053 original size:31 final size:33
Alignment explanation
Indices: 34993--35073 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 33
34983 GGTTGGTGTA
* *
34993 TATATAATATAA-ATATGTGTGCATGGTTTTGT-
1 TATAT-ATATAATATATATGTGCATAGTTTTGTG
35025 TATATATATAATATATATGTGCA-AGTTTTGTG
1 TATATATATAATATATATGTGCATAGTTTTGTG
*
35057 T-TATATGTAATATATAT
1 TATATATATAATATATAT
35074 ATGCGTGGCG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
31 28 0.64
32 16 0.36
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (33 bp):
TATATATATAATATATATGTGCATAGTTTTGTG
Found at i:35070 original size:36 final size:34
Alignment explanation
Indices: 34991--35075 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 34
34981 TTGGTTGGTG
* *
34991 TATATATAATATAA-ATATGTGTGCATGGTTTTGT
1 TATAT-TAATATAATATATATGTGCAAGGTTTTGT
*
35025 TATA-T-ATATAATATATATGTGCAAGTTTTGTGT
1 TATATTAATATAATATATATGTGCAAGGTTT-TGT
35058 TATATGTAATAT-ATATAT
1 TATAT-TAATATAATATAT
35076 GCGTGGCGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
31 6 0.14
32 15 0.35
33 7 0.16
34 4 0.09
35 7 0.16
36 4 0.09
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.48
Consensus pattern (34 bp):
TATATTAATATAATATATATGTGCAAGGTTTTGT
Found at i:35224 original size:18 final size:19
Alignment explanation
Indices: 35201--35248 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
35191 TATTATATTA
*
35201 TATTATATGTG-TGGGTCT
1 TATTATATATGATGGGTCT
*
35219 TATTATATATGCATTGGTCT
1 TATTATATATG-ATGGGTCT
35239 TATTATATAT
1 TATTATATAT
35249 ATTATATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
20 16 0.62
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (19 bp):
TATTATATATGATGGGTCT
Found at i:35686 original size:36 final size:35
Alignment explanation
Indices: 35611--35688 Score: 84
Period size: 36 Copynumber: 2.2 Consensus size: 35
35601 GTGAACCATG
* * * * *
35611 TTAACTTGGTGATTATATTATTACGGCGAACTGTG
1 TTAATTTGGTGATTATATTAATACGACGAAATGTA
* *
35646 TTAATTTGGTGATCTGTATTAATATGACGAAATGTA
1 TTAATTTGGTGAT-TATATTAATACGACGAAATGTA
35682 TTAATTT
1 TTAATTT
35689 CCCAAACTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
35 12 0.34
36 23 0.66
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (35 bp):
TTAATTTGGTGATTATATTAATACGACGAAATGTA
Found at i:36393 original size:51 final size:51
Alignment explanation
Indices: 36324--36431 Score: 135
Period size: 51 Copynumber: 2.1 Consensus size: 51
36314 TATGATGGAG
* *
36324 TATGAAATGTTATCTTGCATAAACTATTATTCGGTATGAACTGATATTTCA
1 TATGAAATATTATCTTGCATAAACTATCATTCGGTATGAACTGATATTTCA
* * * * * *
36375 TATGAACTATTATTTTGCATGAGCTATCATTTGGTATGAACTGTTATTTCA
1 TATGAAATATTATCTTGCATAAACTATCATTCGGTATGAACTGATATTTCA
*
36426 CATGAA
1 TATGAA
36432 TAGATGTTTG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (51 bp):
TATGAAATATTATCTTGCATAAACTATCATTCGGTATGAACTGATATTTCA
Found at i:36423 original size:17 final size:17
Alignment explanation
Indices: 36345--36423 Score: 70
Period size: 17 Copynumber: 4.6 Consensus size: 17
36335 ATCTTGCATA
*
36345 AACTATTATTCGGTATG
1 AACTATTATTTGGTATG
**
36362 AACTGA-TATTTCATATG
1 AACT-ATTATTTGGTATG
* *
36379 AACTATTATTTTGCATG
1 AACTATTATTTGGTATG
* *
36396 AGCTATCATTTGGTATG
1 AACTATTATTTGGTATG
*
36413 AACTGTTATTT
1 AACTATTATTT
36424 CACATGAATA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
16 1 0.02
17 45 0.96
18 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.44
Consensus pattern (17 bp):
AACTATTATTTGGTATG
Found at i:36497 original size:18 final size:18
Alignment explanation
Indices: 36476--36521 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
36466 ATGCCCATTT
*
36476 TATGAAAATTACTTATTA
1 TATGAGAATTACTTATTA
* * *
36494 TATGTGCACTACTTATTA
1 TATGAGAATTACTTATTA
36512 TATGAGAATT
1 TATGAGAATT
36522 GTTGTATCAT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (18 bp):
TATGAGAATTACTTATTA
Found at i:38063 original size:97 final size:99
Alignment explanation
Indices: 37889--38096 Score: 339
Period size: 97 Copynumber: 2.1 Consensus size: 99
37879 ATGCGTCCAT
* *
37889 GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCATGAAACTATAATCATATTTT
1 GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCACGAAACAATAATCATATTTT
*
37954 ATTGATATCATAAT-ATTTGCACTGGTTTATGAA
66 ATTGATATCATAATAATTTGCACTGCTTTATGAA
*
37987 GCATTTGCATCATTCAAGAGCATATGCATGTGGTTA-TTTAGTCACGAAACAATAATCATATTTT
1 GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCACGAAACAATAATCATATTTT
*
38051 ATTGGTATCATAATAACATTTGCACTGCTTTATGAA
66 ATTGATATCATAAT-A-ATTTGCACTGCTTTATGAA
38087 GCATTTGCAT
1 GCATTTGCAT
38097 TATCTTGGAT
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
97 39 0.38
98 35 0.34
100 28 0.27
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (99 bp):
GCATTTGCATCATTCAAGAACATATGCATGTGGTTATTTTAGTCACGAAACAATAATCATATTTT
ATTGATATCATAATAATTTGCACTGCTTTATGAA
Found at i:38471 original size:90 final size:90
Alignment explanation
Indices: 38374--38582 Score: 221
Period size: 90 Copynumber: 2.3 Consensus size: 90
38364 TGGTTTCGCT
*
38374 TAGTAAGTCCTTTCAAATTTTGGTTCCACCCAAGTTTGTT-CAGAGA-TTTATAGTTTCGCCCAA
1 TAGTAAGTCCTTTCAAATTTTGGTTCCACCCAAGTTTGTTCCA-A-ACGTTATAGTTTCGCCCAA
* *
38437 GTCCATTAT-TGAAGTTATGGTTTCATC
64 GTCCATTATCT-AAGTTATAGTTTCACC
** * * *
38464 TAGTAAGTCCTTTCAAATTCTT-GTTCGGCCCAGGTTTGTTCCAAACGTTCTAGTTTTGCCCAAG
1 TAGTAAGTCCTTTCAAATT-TTGGTTCCACCCAAGTTTGTTCCAAACGTTATAGTTTCGCCCAAG
* * **
38528 TCCATTGTCTAAGTTTTAGTTTTGCC
65 TCCATTATCTAAGTTATAGTTTCACC
* *
38554 CAGTAAGTCCTTTCAAA-TTTGGTTTCACC
1 TAGTAAGTCCTTTCAAATTTTGGTTCCACC
38583 TAGGTTCTTT
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
88 2 0.02
89 7 0.07
90 84 0.86
91 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (90 bp):
TAGTAAGTCCTTTCAAATTTTGGTTCCACCCAAGTTTGTTCCAAACGTTATAGTTTCGCCCAAGT
CCATTATCTAAGTTATAGTTTCACC
Found at i:38607 original size:30 final size:30
Alignment explanation
Indices: 38573--38647 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
38563 CTTTCAAATT
**
38573 TGGTTTCACCTAGGTTCTTTCCA-ATATTTC
1 TGGTTTCACCTAGGTTAATTCCAGA-ATTTC
** *
38603 TGGTTTTGCCTAGGTTAATTCTAGAATTTC
1 TGGTTTCACCTAGGTTAATTCCAGAATTTC
*
38633 TGGTTTCATCTAGGT
1 TGGTTTCACCTAGGT
38648 CCACTGTCAA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
30 35 0.97
31 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.47
Consensus pattern (30 bp):
TGGTTTCACCTAGGTTAATTCCAGAATTTC
Found at i:38670 original size:119 final size:117
Alignment explanation
Indices: 38527--38907 Score: 381
Period size: 119 Copynumber: 3.2 Consensus size: 117
38517 TTTTGCCCAA
* *
38527 GTCCATTGTCTAAGTTTTAGTTTTGCCCAGTAAGTCCTTTCAAATTTGGTTTCACCTAGGTTCTT
1 GTCCATTGTCGAAGTTTTGGTTTTGCCCAGTAAGTCCTTTCAAATTTGGTTTCACCTA-GTTCTT
38592 TCCAATATTTCTGGTTTTGCCTAGGTTAATTCTAGAATTTCTGGTTTCATCTAG
65 TCCAA-ATTTCTGGTTTTGCCTAGGTTAATTCTAGAATTTCTGGTTTCATCTAG
* * * * * * *
38646 GTCCACTGTCAAAGTTTTGGTTTTGCCTAGTAAGTTCTTTCAAATTTTGATTTTA-CTCA-CTCT
1 GTCCATTGTCGAAGTTTTGGTTTTGCCCAGTAAGTCCTTTCAAA-TTTGGTTTCACCT-AGTTCT
* * * ** * * * * * *** *
38709 ATTGTCGAAGTTCTGGTTTCACCCAGGTCT-ATTGTCGAAGTTATGGTTTTGCCCAG
64 -TT-CCAAATTTCTGGTTTTGCCTAGGT-TAATTCTAGAATTTCTGGTTTCATCTAG
* ** * * *
38765 GTCCATTGTTGAAGTTTTGGTTTCACCCAGTAAGTCCTTCCAAATTCTGGTTTCACCCAAGTTCG
1 GTCCATTGTCGAAGTTTTGGTTTTGCCCAGTAAGTCCTTTCAAATT-TGGTTTCA-CCTAGTTCT
*
38830 TTCCAAATTTTATGGTTTTGCCTAGGTTAATTCTAGAATTTCTGGTTTCATCTAG
64 TTCCAAA-TTTCTGGTTTTGCCTAGGTTAATTCTAGAATTTCTGGTTTCATCTAG
38885 GTCCATTGTCGAAGTTTTGGTTT
1 GTCCATTGTCGAAGTTTTGGTTT
38908 GGCCAAGTCT
Statistics
Matches: 200, Mismatches: 51, Indels: 21
0.74 0.19 0.08
Matches are distributed among these distances:
118 5 0.03
119 123 0.62
120 69 0.34
121 3 0.01
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.43
Consensus pattern (117 bp):
GTCCATTGTCGAAGTTTTGGTTTTGCCCAGTAAGTCCTTTCAAATTTGGTTTCACCTAGTTCTTT
CCAAATTTCTGGTTTTGCCTAGGTTAATTCTAGAATTTCTGGTTTCATCTAG
Found at i:38742 original size:30 final size:30
Alignment explanation
Indices: 38706--38794 Score: 124
Period size: 30 Copynumber: 3.0 Consensus size: 30
38696 TTTTACTCAC
*
38706 TCTATTGTCGAAGTTCTGGTTTCACCCAGG
1 TCTATTGTCGAAGTTATGGTTTCACCCAGG
**
38736 TCTATTGTCGAAGTTATGGTTTTGCCCAGG
1 TCTATTGTCGAAGTTATGGTTTCACCCAGG
* * *
38766 TCCATTGTTGAAGTTTTGGTTTCACCCAG
1 TCTATTGTCGAAGTTATGGTTTCACCCAG
38795 TAAGTCCTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (30 bp):
TCTATTGTCGAAGTTATGGTTTCACCCAGG
Found at i:38906 original size:60 final size:60
Alignment explanation
Indices: 38573--38907 Score: 154
Period size: 60 Copynumber: 5.6 Consensus size: 60
38563 CTTTCAAATT
* * *
38573 TGGTTTCACCTAGGTTC-TT-TCCAATATTTCTGGTTTTGCCTAGGTTAATTCTAGAATTTC
1 TGGTTTCACCTAGGTCCATTGTCGAA-GTTT-TGGTTTTGCCTAGGTTAATTCTAGAATTTC
* * *
38633 TGGTTTCATCTAGGTCCACTGTCAAAGTTTTGGTTTTGCCTA-G-TAAGTTCTTTCA-AATTT-
1 TGGTTTCACCTAGGTCCATTGTCGAAGTTTTGGTTTTGCCTAGGTTAA-TTC--T-AGAATTTC
* * * * * ** * * * * *
38693 TGATTTTA-CTCA-CTCTATTGTCGAAGTTCTGGTTTCACCCAGGTCT-ATTGTCGAAGTTA
1 TGGTTTCACCT-AGGTCCATTGTCGAAGTTTTGGTTTTGCCTAGGT-TAATTCTAGAATTTC
** * * ** * * ** *
38752 TGGTTTTGCCCAGGTCCATTGTTGAAGTTTTGGTTTCACCCA-G-TAAGTCCTTCCAAATTC
1 TGGTTTCACCTAGGTCCATTGTCGAAGTTTTGGTTTTGCCTAGGTTAA-TTC-TAGAATTTC
* * * * * * *
38812 TGGTTTCACCCAAGTTCGTT-CCAAATTTTATGGTTTTGCCTAGGTTAATTCTAGAATTTC
1 TGGTTTCACCTAGGTCCATTGTCGAAGTTT-TGGTTTTGCCTAGGTTAATTCTAGAATTTC
*
38872 TGGTTTCATCTAGGTCCATTGTCGAAGTTTTGGTTT
1 TGGTTTCACCTAGGTCCATTGTCGAAGTTTTGGTTT
38908 GGCCAAGTCT
Statistics
Matches: 200, Mismatches: 54, Indels: 42
0.68 0.18 0.14
Matches are distributed among these distances:
57 1 0.00
58 9 0.05
59 41 0.20
60 120 0.60
61 20 0.10
62 9 0.05
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (60 bp):
TGGTTTCACCTAGGTCCATTGTCGAAGTTTTGGTTTTGCCTAGGTTAATTCTAGAATTTC
Found at i:39314 original size:77 final size:79
Alignment explanation
Indices: 39056--39408 Score: 285
Period size: 79 Copynumber: 4.6 Consensus size: 79
39046 TCATTTTATC
* * * * * * * *
39056 AAGTGAAATCTATTTCCAAAAATGGGTTGAGCCTCGAG-TTTTCATCAGGGTCCTTT-TAGTTTT
1 AAGTCAAATCCATTTTCGAAAACGGGTTGAGCCTCGAGATTGTCATCAAGGTCCTTTCAAG-TTT
39119 CTTTCA-TTTTATTAA
65 -TTTCATTTTTATTAA
*** * * * * * * *
39134 AAGTTGGATCCATTTTCGAAAATGGATCGAGCCTTGAGATTGTCATCGAGGTCATTT-TAG--TT
1 AAGTCAAATCCATTTTCGAAAACGGGTTGAGCCTCGAGATTGTCATCAAGGTCCTTTCAAGTTTT
*
39196 TTCA-TTTTATCAA
66 TTCATTTTTATTAA
* ** * * * * * ** *
39209 AAGTCACA-CTTGTTTTCTAATATGGGTTGAGCCTCGGGATTGTTATTGAGGTCCTTTCAATTTT
1 AAGTCAAATC-CATTTTCGAAAACGGGTTGAGCCTCGAGATTGTCATCAAGGTCCTTTCAAGTTT
39273 TTTCA-TTTTATT-A
65 TTTCATTTTTATTAA
* * * *
39286 AAGTCAAATTCATTTTCGAAAACGGGTTGAACCTCGAAATTGTCATCAAGGTCCTTTTAAGTTTT
1 AAGTCAAATCCATTTTCGAAAACGGGTTGAGCCTCGAGATTGTCATCAAGGTCCTTTCAAGTTTT
39351 TTCATTTTTATTAA
66 TTCATTTTTATTAA
* *
39365 AAGTCAAATCCATTTTCGAAAATGGATTGAGCCTCGAGATTGTC
1 AAGTCAAATCCATTTTCGAAAACGGGTTGAGCCTCGAGATTGTC
39409 GTCGAGTTTC
Statistics
Matches: 216, Mismatches: 51, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
74 1 0.00
75 54 0.25
76 2 0.01
77 54 0.25
78 48 0.22
79 57 0.26
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.41
Consensus pattern (79 bp):
AAGTCAAATCCATTTTCGAAAACGGGTTGAGCCTCGAGATTGTCATCAAGGTCCTTTCAAGTTTT
TTCATTTTTATTAA
Found at i:39427 original size:78 final size:77
Alignment explanation
Indices: 39019--39775 Score: 420
Period size: 75 Copynumber: 10.0 Consensus size: 77
39009 TTTCAAACTT
* * * * * * *
39019 GAGATTTTCATGGAGG--CTTTTAG-TTTTTCATTTTA-T-CAAGTGAAATCTATTTCCAAAAAT
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAAT
39079 GGGTTGAGCCTC
66 GGGTTGAGCCTC
* ***
39091 GAG-TTTTCATC-AGGGTCCTTTTAGTTTTCTTTCATTTTATTAAAAGTTGGATCCATTTTCGAA
1 GAGATTGTCATCGA-GGTCCTTTTAG-TTT-TTTCATTTTATTAAAAGTCAAATCCATTTTCGAA
* * *
39154 AATGGATCGAGCCTT
63 AATGGGTTGAGCCTC
* * * ** * *
39169 GAGATTGTCATCGAGGTCATTTTAG--TTTTCATTTTATCAAAAGTCACA-CTTGTTTTCTAATA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCAAATC-CATTTTCGAAAA
39231 TGGGTTGAGCCTC
65 TGGGTTGAGCCTC
* * * * * *
39244 GGGATTGTTATTGAGGTCCTTTCAATTTTTTTCATTTTATT-AAAGTCAAATTCATTTTCGAAAA
1 GAGATTGTCATCGAGGTCCTTT-TAGTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAA
* *
39308 CGGGTTGAACCTC
65 TGGGTTGAGCCTC
* *
39321 GAAATTGTCATCAAGGTCCTTTTAAGTTTTTTCATTTTTATTAAAAGTCAAATCCATTTTCGAAA
1 GAGATTGTCATCGAGGTCCTTTT-AGTTTTTTCA-TTTTATTAAAAGTCAAATCCATTTTCGAAA
*
39386 ATGGATTGAGCCTC
64 ATGGGTTGAGCCTC
* * * * * * * * * *
39400 GAGATTGTCGTCGAGTTTCTTTTAG---TTTAATTTTGTCAAAATTTGAACAT--GTTTTCAAAA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTCATTTTATTAAAA-GTCAA-ATCCATTTTC-GAA
*
39460 AATGGGTTGAACCTC
63 AATGGGTTGAGCCTC
* * * * * *
39475 GGGGTTG-CTATTGAGGTCCTTTTAGTTTTTTTTTCATTTTATTAAAAGTCGAATTCATTTTAGA
1 GAGATTGTC-ATCGAGGTCCTTTTAG---TTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGA
** *
39539 AAATGGGTCAAACCTC
62 AAATGGGTTGAGCCTC
* * * * * * * * *
39555 GAG-TTTTCGTCGAGATCCTTTTAG--TTTTAAATTTATCAAAAGTCGAATCTATTTTCAAAAAT
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAAT
*
39617 GGGTTGAG-CTT
66 GGGTTGAGCCTC
* * * * * * *** *
39628 TAGGATTGCCGTCGAGGTCCTTTCA-ATTTTTCATTTTGTTAAAAGTCAAATTTGTTTTC-AGAA
1 GA-GATTGTCATCGAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAA
** *
39691 TGGGTCAAGCCTT
65 TGGGTTGAGCCTC
* * * * * *
39704 GAGATTATCAT-TA--T--TTTTAG-TTTTTCATTTTATCAAAAATCAAATCTATTTTCAAGAAA
1 GAGATTGTCATCGAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGA-AAA
* *
39763 TAGGTTGAACCTC
65 TGGGTTGAGCCTC
39776 AATATTAACA
Statistics
Matches: 517, Mismatches: 129, Indels: 78
0.71 0.18 0.11
Matches are distributed among these distances:
70 33 0.06
71 10 0.02
72 14 0.03
73 10 0.02
74 54 0.10
75 127 0.25
76 43 0.08
77 54 0.10
78 50 0.10
79 84 0.16
80 21 0.04
81 17 0.03
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (77 bp):
GAGATTGTCATCGAGGTCCTTTTAGTTTTTTCATTTTATTAAAAGTCAAATCCATTTTCGAAAAT
GGGTTGAGCCTC
Found at i:41529 original size:3 final size:3
Alignment explanation
Indices: 41521--41804 Score: 98
Period size: 3 Copynumber: 94.3 Consensus size: 3
41511 AATATTTATA
* * * *
41521 AAT AAT AAT AGT AAT -GT AAT AAT AAT AAT AAT AAT AAT ATT AGT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
41567 AGT -AT AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT
1 AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* *
41615 AAT AAT AAT AAT AAT AA- CAT AGA- AATT CAA- AAA AAGT AA- ACAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AA-T -AAT AAT AA-T AAT A-AT
* * *
41658 AAT AA- AGAT ATT AA- AAT AA- AAT -AT ACACT -AT ATT TAT AAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT AAT
* * *
41701 AAT AGT AA- ATAT AAT AAT AAT AAT AAT GAT AAT AAT AAT ATT AAGT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* * * *
41747 -AT AGT -AT AAAT AAT ATGT ACAT AA- AGT -AT AAT AAT AAGT AAC AAT
1 AAT AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT
41792 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
41805 TAGAAATTCA
Statistics
Matches: 206, Mismatches: 42, Indels: 66
0.66 0.13 0.21
Matches are distributed among these distances:
2 21 0.10
3 156 0.76
4 26 0.13
5 3 0.01
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:41863 original size:16 final size:16
Alignment explanation
Indices: 41828--41860 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
41818 AACTAAACAT
*
41828 AATATAATAATATTAA
1 AATAAAATAATATTAA
41844 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
41859 AA
1 AA
41861 ATACTTGTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:43434 original size:123 final size:123
Alignment explanation
Indices: 43214--43461 Score: 446
Period size: 123 Copynumber: 2.0 Consensus size: 123
43204 TAGGTTTAAC
*
43214 TATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGAAGAACCTGGCAATTTAGTTAATTTTTTTG
1 TATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGAAGAACCCGGCAATTTAGTTAA-TTTTTTG
43279 TTCCATAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAA
65 TTCCATAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAA
43338 TATGTTAGTGGG-CTCTAGAAGGCCCAAGCTTAAGATAGAACCCGGCAATTTTAGTTAA-TTTTT
1 TATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGA-AGAACCCGGCAA-TTTAGTTAATTTTTT
43401 GTTCCATAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAA
64 GTTCCATAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAA
43461 T
1 T
43462 GCTATAGGCT
Statistics
Matches: 121, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
123 89 0.74
124 23 0.19
125 9 0.07
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.30
Consensus pattern (123 bp):
TATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGAAGAACCCGGCAATTTAGTTAATTTTTTGT
TCCATAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGAAAATGTTTGAAAA
Found at i:43649 original size:26 final size:26
Alignment explanation
Indices: 43620--43675 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
43610 TGGTACAAAT
43620 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
43646 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
43672 TGAT
1 TGAT
43676 TGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:46851 original size:14 final size:15
Alignment explanation
Indices: 46827--46855 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
46817 TTTTTTTTTT
46827 GAAAGGCAGAAATTG
1 GAAAGGCAGAAATTG
46842 GAAA-GCAGAAATTG
1 GAAAGGCAGAAATTG
46856 AAAATACCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.07, G:0.31, T:0.14
Consensus pattern (15 bp):
GAAAGGCAGAAATTG
Found at i:47358 original size:72 final size:71
Alignment explanation
Indices: 47149--50331 Score: 1697
Period size: 72 Copynumber: 42.1 Consensus size: 71
47139 ATAAATTAAG
* ** * * ** * *
47149 AAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
47214 TTTTTTTTGA
65 ---TTTTTGA
* * * *
47224 AAGATAGAAATTGAAAATACCTCAGCATGTGAAC-TGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTCTCGCAATATGAG
47288 TTGATTTTTGA
61 TTGATTTTTGA
* * * *
47299 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGTAATATGAGTCGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
47364 TTTTTTTTTGAA
65 ----TTTTTG-A
* * * *
47376 AAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTCAA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAG----
**
47441 TTTTTTTTTGAA
61 TTGATTTTTG-A
* * *
47453 AAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
47518 ATTTTGA
65 TTTTTGA
*
47525 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
47590 ATTTTG-
65 TTTTTGA
* * ** ** * * * * *
47596 AAACATAAATTAAGAAACAAAAATTGCCAA--TACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
1 AAACAGAAATT--G-AA-AATACCT--CAACGTGTCT-TGAG-G-CTC-A-ACTC-A-T--TCT-
* *
47659 CTGCATTATGAGTTAATTTTGTTTTTTGA
50 C-GCAATATGAG------TTGATTTTTGA
* * * * *
47688 AAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTCTCGCAATATGAG
47752 TTGATTTTTGA
61 TTGATTTTTGA
* * *
47763 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTCGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
47828 TTTTTTTTTGA
65 ----TTTTTGA
* * * *
47839 CAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTG
1 -AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTG
*
47904 AATTTTGA
64 ATTTTTGA
*
47912 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
47977 ATTTTG-
65 TTTTTGA
* * ** ** * * * *
47983 AAACATAAATTAAGAAACAAAAATTGCCAA--TACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
1 AAACAGAAATT--G-AA-AATACCT--CAACGTGTCT-TGAG-G-CTC-A-ACTC-A-T----TC
* * *
48046 CCGCATTATGAGTTAATTTTGTTTTTTGA
49 TCGCAATATGAG------TTGATTTTTGA
* * * * *
48075 AAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTCTCGCAATATGAG
48139 TTGATTTTTGA
61 TTGATTTTTGA
* *
48150 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTACTCGCAATATGAGTCGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
48215 CTTTTTTTTTGAA
65 -----TTTTTG-A
* * * *
48228 AAACAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
48293 ATTTTGA
65 TTTTTGA
* *
48300 AAACAGAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
48365 ATTTTG-
65 TTTTTGA
* * ** ** * * * *
48371 AAACATAAATTAAGAAACAAAAATTGCCAA--TACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
1 AAACAGAAATT--G-AA-AATACCT--CAACGTGTCT-TGAG-G-CTC-A-ACTC-A-T----TC
* * * *
48434 CCGCATTATGGGTTAATTTTTTTTGA
49 TCGCAATATGAGTTGA---TTTTTGA
* * * * * *
48460 AAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGTTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTCTCGCAATATGAG
48524 TTGATTTTTGA
61 TTGATTTTTGA
* *
48535 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
48600 TTTTTGA
65 TTTTTGA
* * * * *
48607 AAACAGAAATTGAAATTACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGA---G-
*
48672 TTTGTTTTTTGAA
61 -TTGATTTTTG-A
* * * *
48685 AAACAGAAATTGAAAATGCCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
48750 ATTTTGA
65 TTTTTGA
* *
48757 AAACAGAAATTGAAATTACCTCAACGCGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
48822 ATTTTGA
65 TTTTTGA
* * * * *
48829 AAATAGAAA-TAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCCCGCATTATGAGTTA
1 AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAG---
*
48893 ATTTTGTTTTTTGA
61 ---TTGATTTTTGA
* * * * *
48907 AAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTCTCGCAATATGAG
48971 TTGATTTTTGA
61 TTGATTTTTGA
* * * *
48982 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATACTCGCAATATGAGTCGAT
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGA-
49047 TTTTTTTTTGAA
65 ----TTTTTG-A
* * *
49059 AAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
49124 ATTTTGA
65 TTTTTGA
* *
49131 AAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
49196 ATTTTG-
65 TTTTTGA
* * ** ** * * *
49202 AAACATAAATTAAGAAAGAAAATTTGCCAA--TACCTCAGCGTGCCCCAAGGCTCAACTCACCTC
1 AAACAGAAATT--G-AA-AATACCT--CAACGTGTCT-TGAG-G-CTCAA--CTC-A-T----TC
* * *
49265 CCGCATTATGAGTTAATTTTGTTTTTTGA
49 TCGCAATATGAG------TTGATTTTTGA
* * * * *
49294 AAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTCTCGCAATATGAG
49358 TTGATTTTTGA
61 TTGATTTTTGA
* * *
49369 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTCGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
49434 TTTTTTTTGAA
65 ---TTTTTG-A
* * *
49445 AAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
49510 ATTTTGA
65 TTTTTGA
* *
49517 AAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
49582 ATTTTG-
65 TTTTTGA
* * ** * * * * * * *
49588 AAACATAAATTAAGAAACAAAAATTGCCAA--T-ACCTCAGCGTTCCCCGAGGCTCA-ACTCAC-
1 AAACAGAAATT--G-AA-AATACCT--CAACGTGTCTTGAG-G---CTC-A-ACTCATTCTCGCA
* ** **
49648 CTCCCGCA-TT-ATGAGTT-A
54 AT-ATG-AGTTGAT-TTTTGA
**** *** ** * ** ** * * * *
49666 ATTTTGTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCA-ACTCAC
1 AAACAG-AAATTGAAA-AT---ACCTCAACGTGTCT-TG-A-G-G--CTC-A-ACTCATTCTCGC
* * * *
49729 -CTCTCGCAATATGA--GTTGA
53 AATAT-G-AGT-TGATTTTTGA
**** * *
49748 TTTTTGAAAACATAAATTGAAAATACCTCAACGT-TCTTGAGGTTCAACTCATTACTCGCAATAT
1 --AAACAGA-----AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATAT
*
49812 GAGTTGAATTTTGA
58 GAGTTGATTTTTGA
* * * * *
49826 AAATAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCTTTGCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
*
49891 ATTTTGA
65 TTTTTGA
49898 AAACAGAAATTG-AAATACCTC-ACGTGTCTTGAGGCTCAACTCA-TCTCGCAATATGAGTTGA-
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGAT
49959 TTTTG-
66 TTTTGA
* * * * *
49964 AAACATAAATTGAAATTACCTCAGCGTG-C--GAGGCTCAACTCA-CCTCCGC-ATATGAGTTAA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCT-CGCAATATGAGTTGA
50024 TTTTTTTTGA
65 ---TTTTTGA
* * * * *
50034 AAATAGAAATTGAAAATACCTCAGCATGTGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACAGAAATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTG
50098 ATTTTTGA
64 ATTTTTGA
** * *
50106 AAACTTAAATTGAAAATACCTCAACATGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGA
*
50171 ATTTTGA
65 TTTTTGA
* *
50178 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA
*
50243 ATTTTGA
65 TTTTTGA
* * * * *
50250 AAATAGAAA-TAAAAATTACCTCAACGTGTCTTGAGACTCAACTCATTTATCGTAATATGAGTTG
1 AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTG
*
50314 AATTTTGA
64 ATTTTTGA
*
50322 AAATAGAAAT
1 AAACAGAAAT
50332 AAAAATATCA
Statistics
Matches: 2461, Mismatches: 400, Indels: 496
0.73 0.12 0.15
Matches are distributed among these distances:
65 25 0.01
66 14 0.01
67 14 0.01
68 20 0.01
69 6 0.00
70 44 0.02
71 113 0.05
72 937 0.38
73 57 0.02
74 131 0.05
75 117 0.05
76 113 0.05
77 259 0.11
78 221 0.09
79 32 0.01
80 24 0.01
81 97 0.04
82 9 0.00
83 12 0.00
84 12 0.00
85 54 0.02
86 15 0.01
87 14 0.01
88 21 0.01
89 21 0.01
90 19 0.01
91 30 0.01
92 9 0.00
93 21 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (71 bp):
AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGAT
TTTTGA
Found at i:47856 original size:387 final size:374
Alignment explanation
Indices: 46858--50251 Score: 2875
Period size: 387 Copynumber: 8.9 Consensus size: 374
46848 AGAAATTGAA
* * * * *
46858 AATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCGTAATAT-A---AGTTGATTTTTGAAAA
1 AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT-GCAATATGAGTTAATTGTTTTTTGAAAG
* * * *
46919 ACAGAAATTGAAATTACCTCAGC-GCGTCCTGAGGCTCAACTCACCTCTCGC-A-ATGAGTTGAT
65 ATAGAAATTGAAAATACCTCAGCAGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * * **
46981 TTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAAT
128 -TTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
* **
47046 ATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAACGCCTCTTGAGGCTCAACTCATT
191 ATGAGTTGA--TTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT
*
47111 TCTCGCAATATGAGTTGAATTTTG-AAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCG
254 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT--G------AAA-T-----TACCTCAGCG
* ** ** * * *
47175 TGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTG-ATTTT------T---TTTGAAAGATA
305 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAGAAACA-A
47230 GAAATTG
369 -AAATTG
** *
47237 AAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAATATGAG----TTGATTTTTG
1 --AATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCT-GCAATATGAGTTAATTGTTTTTTG
* * * * * * * *
47298 AAA-ACATAAATTGAAAATACCTCAAC-GTGTCTTGAGGTTCAACTCA-TTACTCGTAATATGAG
61 AAAGATAGAAATTGAAAATACCTCAGCAGTGAC-CGAGGCTCAACTCACCT-CTCGCAATATGAG
* * * *
47360 TCGATTTTTTTTTGAAAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTC
124 TTGA----TTTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
** * *
47425 TCGCAATATGAGTCAATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGC
184 TCGCAATATGAG----TTGATTTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
* *
47490 TCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTC
244 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
47555 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAAT
309 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATT-AGAAACAAAAAT
47620 TG
373 TG
* *
47622 CCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCTGCATTATGAGTTAATTTTGTTTTTTG
1 --AATACCTCAGCGTGCCCTGAGGCTCAACTCACCT-CTGCAATATGAGTTAA--TTGTTTTTTG
47687 AAAGATAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAG
61 AAAGATAGAAATTGAAAATACCTCAGCA-GTG-ACCGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
47752 TTGATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCA-TTACTCGC
124 TTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT-CTCGC
* * * *
47816 AATATGAGTCGATTTTTTTTTGACAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA
188 AATATGAGTTGA----TTTTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
* *
47881 CTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGA
248 CTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGA
47946 GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTG
313 GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATT-AGAAACAAAAATTG
* * *
48009 CCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCATTATGAGTTAATTTTGTTTTTTG
1 --AATACCTCAGCGTGCCCTGAGGCTCAACTCACCT-CTGCAATATGAGTTAA--TTGTTTTTTG
48074 AAAGATAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAG
61 AAAGATAGAAATTGAAAATACCTCAGCA-GTG-ACCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
48139 TTGATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTACTCGC
124 TTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT-CTCGC
* * * *
48203 AATATGAGTCGACTTTTTTTTTGAAAAACAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCA
188 AATATGAGTTGA-----TTTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCA
* * *
48268 ACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTTTTG
247 ACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTG
48333 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTG
312 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATT-AGAAACAAAAATTG
* * * *
48397 CCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCATTATGGGTTAATT-TTTTTTGAA
1 --AATACCTCAGCGTGCCCTGAGGCTCAACTCACCT-CTGCAATATGAGTTAATTGTTTTTTGAA
*
48461 AGATAGAAATTGAAAATACCTCAGCATGTGAACCGAGGTTCAACTCACCTCTCGCAATATGAGTT
63 AGATAGAAATTGAAAATACCTCAGCA-GTG-ACCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
48526 GATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCA-TTACTCGCAA
126 GATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT-CTCGCAA
* * * * **
48590 TATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTCTCCTGAGGCTCAACTCACCT
190 TATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
** * * *
48655 CTCGCAATATGAGTCGATTTGTTTTTTGAAAAACAGAAATTGAAAATGCCTCAGCATGTCTTGAG
255 CTCGCAATATGA---G--TTGAATTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAG
* *
48720 GCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATT-G------AAA-T-
314 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAACATAAATTAGAAACAAAAATTG
* * * * **
48773 --TACCTCAACGCGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-----TTTTGAAA
1 AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT-GCAATATGAGTT-AATTGTTTTTTGAAA
* * * * * *
48831 -ATAGAAA-TAAAAATTACCTCAAC-GTGTCTTGAGGCTCAACTCACCTCCCGCATTATGAGTTA
64 GATAGAAATTGAAAA-TACCTCAGCAGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAG---
* * * * *
48893 ATTTTGTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACC
124 ---TTGATTTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCACC
* *
48957 TCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCA
182 TCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCA
* * * * *
49022 ACTCA-TACTCGCAATATGAGTCGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCAT
247 ACTCATTTCTCGCAATATGAGTTGA-----ATTTTG-AAAACAGAAATTGAAATTACCTCAGCGT
* *
49086 GTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATT-G------A
306 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAACATAAATTAGAAACAAA
49144 AA-T-
370 AATTG
** * * ** ** *
49147 --TACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT-TTGAAACATA
1 AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT-GCAATATGAGTT-AATTGTT----TTTT
* * ** * * * *
49209 AATTAAGAAAGAAAATTTGCCAATACCTCAGC-GTGCCCCAAGGCTCAACTCACCTCCCGCATTA
60 GA--AAGATAG-AAA-TTGAAAATACCTCAGCAGTG-ACCGAGGCTCAACTCACCTCTCGCAATA
* * * * *
49273 TGAGTTAATTTTGTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCA
120 TGAG------TTGATTTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCA
*
49337 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTG
175 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTG
* * * * *
49402 AGGTTCAACTCATTACTCGCAATATGAGTCGATTTTTTTTGAAAAACAGAAATTGAAAATACCTC
240 AGGCTCAACTCATTTCTCGCAATATGAGTTGA---ATTTTG-AAAACAGAAATTGAAATTACCTC
* * *
49467 AGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATT-G--
301 AGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAACATAAATTAGAA
49529 ----AAA-T-
365 ACAAAAATTG
** * * **
49533 --TACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT-TTGAAACATA
1 AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT-GCAATATGAGTT-AATTGTT------T-
* * ** ** * *
49595 AATTAAGAAACA-A-AAATTGCCAATACCTCAGC-GTTCCCCGAGGCTCAACTCACCTCCCGCAT
57 --TT-TGAAAGATAGAAATTGAAAATACCTCAGCAG-TGACCGAGGCTCAACTCACCTCTCGCAA
* * * * *
49657 TATGAGTTAATTTTGTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCT
118 TATGAG------TTGATTTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCT
*
49721 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCAACGT-TCT
173 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCT
* * *
49785 TGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAG
238 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
*
49850 CGTGTCTTGAGGCTCAACTC-TTTGCTCGCAATCTGAGTTGAATTTTG-----------A-AAAC
303 CGTGTCTTGAGGCTCAACTCATTT-CTCGCAATATGAGTTGAATTTTGAAACATAAATTAGAAAC
*
49902 AGAAATTG
367 AAAAATTG
* * * * *
49910 AAATACCTCA-CGTGTCTTGAGGCTCAACTCATCTC-GCAATATGAG----TTG-ATTTTGAAAC
1 -AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTGCAATATGAGTTAATTGTTTTTTGAAAG
* *
49968 AT--AAATTGAAATTACCTCAGC-GTG--CGAGGCTCAACTCACCTC-CGC-ATATGAGTTAATT
65 ATAGAAATTGAAAATACCTCAGCAGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
* * * *
50026 TTTTTTGAAAATAGAAATTGAAAATACCTCAGCATGTGC-CGAGGCTCAACTCACCTCTCGCAAT
128 -TTTTTGAAAACAGAAATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCACCTCTCGCAAT
** * * *
50090 ATGAGTTGATTTTTGAAAACTTAAATTGAAAATACCTCAACATGTCTTGAGGTTCAACTCATTAC
191 ATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
*
50155 TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAAC
256 TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
*
50220 TCATTTCTTGCAATATGAGTTGAATTTTGAAA
321 TCATTTCTCGCAATATGAGTTGAATTTTGAAA
50252 ATAGAAATAA
Statistics
Matches: 2720, Mismatches: 171, Indels: 270
0.86 0.05 0.09
Matches are distributed among these distances:
351 71 0.03
352 107 0.04
353 24 0.01
354 9 0.00
357 6 0.00
358 3 0.00
359 18 0.01
361 1 0.00
362 23 0.01
363 2 0.00
365 1 0.00
366 30 0.01
367 5 0.00
368 15 0.01
369 10 0.00
371 2 0.00
372 49 0.02
373 21 0.01
374 155 0.06
375 82 0.03
376 44 0.02
377 16 0.01
378 3 0.00
379 76 0.03
380 16 0.01
381 78 0.03
382 51 0.02
383 74 0.03
384 22 0.01
385 267 0.10
386 403 0.15
387 620 0.23
388 266 0.10
389 80 0.03
390 35 0.01
391 1 0.00
392 32 0.01
393 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (374 bp):
AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTGCAATATGAGTTAATTGTTTTTTGAAAGA
TAGAAATTGAAAATACCTCAGCAGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
ATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATT
TCTCGCAATATGAGTTGAATTTTGAAACATAAATTAGAAACAAAAATTG
Found at i:48661 original size:457 final size:446
Alignment explanation
Indices: 46847--50331 Score: 2130
Period size: 457 Copynumber: 7.7 Consensus size: 446
46837 AATTGGAAAG
* * * * ** * * *
46847 CAGAAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCGTAATATAAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
* * * **
46912 TTGAAAAACAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGC-A-ATGA
66 TTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * * **
46975 GTTGATTTTTTTGAAAGACAAAAATT-G------AA-AATACCTCAGCATGTCTTGAGGCTCAAC
130 GTTGA--ATTTTG-AA-ACATAAATTAGAAAAAAAATAATACCTCAACGTGTCCCGAGGCTCAAC
** * * * * * ***
47032 TCATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCA--ACGCCTCT
191 TCACCTCCCGCAATATGAGTT-A-ATTTTTGAAAATAGAAATTGAAAATACCTCAGCATGTGACT
* * * * *
47095 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGAATTTTG-AAACATAAATTAAGAAACAAAAA
254 CGAGGCTCAACTCACCTACTCGCAATATGAGTTGATTTTTGAAAACAGAAATT--G-------AA
* * ** *
47158 TTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCT-CTCGCATTATGAGTTGATTTTTTTT
310 -----AATACCTCAACGTGTCTTGAGGCTCAACTCA--TACTCGCAATATGAGTTGA---TTTTT
* * * *
47222 GAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-TGAGGCTCAACTCACCTCTCGCAATATG
365 GAAA-ACAGAAATTGAAATTACCTCAGC--GTG-TCTTGAGGCTCAACTCACTTCTCGCAATATG
*
47286 AGTTGA----TTTTTG-AAAA
426 AGTCGATTTTTTTTTGAAAAA
* * * * * * *
47302 CATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGTAATATGAGTCGATTT
1 CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---
* * * * * **
47367 TTTTTTGAAAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAAT
63 -ATTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
* ***** ** *** * * **
47432 ATGAG-TCAATTTTTTTTTGA-AAAACAGAAATTGAA-AATACCTCAGCATGTCTTGAGGCTCAA
126 ATGAGTTGAA-TTTTGAAACATAAATTAGAAAAAAAATAATACCTCAACGTGTCCCGAGGCTCAA
** * * * * * *
47494 CTCATTTCTCGCAATCTGAGTTGAA-TTTTGAAAACAGAAATTGAAATTACCTCA--ACGTGTCT
190 CTCACCTCCCGCAATATGAGTT-AATTTTTGAAAATAGAAATTGAAAATACCTCAGCATGTGACT
* * * * *
47556 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGAATTTTG-AAACATAAATTAAGAAACAAAAA
254 CGAGGCTCAACTCACCTACTCGCAATATGAGTTGATTTTTGAAAACAGAAATT--G-------AA
* * ** * * *
47619 TTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCA-CCTCCTGCATTATGAGTTAATTTTGTTT
310 -----AATACCTCAACGTGTCTTGAGGCTCAACTCATACT-C-GCAATATGAG------TTGATT
* * * * *
47683 TTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAAT
362 TTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTG-TCTTGAGGCTCAACTCACTTCTCGCAAT
*
47747 ATGAGTTGA----TTTTTG-AAAA
423 ATGAGTCGATTTTTTTTTGAAAAA
* * * * * *
47766 CATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTCGATTT
1 CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---
* * * * *
47831 TTTTTTGACAAATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAAT
63 -ATTTTGA-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
* * **
47896 CTGAGTTGAATTTTGAAAACAGAAATT-G-----AAAT--TACCTCAACGTGTCTTGAGGCTCAA
126 ATGAGTTGAATTTTG-AAACATAAATTAGAAAAAAAATAATACCTCAACGTGTCCCGAGGCTCAA
** * **
47953 CTCATTTCTCGCAATATGAGTTGAA-TTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACC
190 CTCACCTCCCGCAATATGAGTT-AATTTTTG----A-AAA-T-AG------AAATTGAAAATACC
* * * * *
48017 TCAGC--GTGCCCCGAGGCTCAACTCACCT-CCCGCATTATGAGTTAATTTTGTTTTTTGAAAGA
241 TCAGCATGTGACTCGAGGCTCAACTCACCTACTCGCAATATGAG------TTGATTTTTGAAA-A
* * * *
48079 TAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCT-CTCGCAATATGAGTTG
299 CAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCA--TACTCGCAATATGAGTTG
* * *
48142 ATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTACTCGCAAT
359 ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACTT-CTCGCAAT
48206 ATGAGTCGACTTTTTTTTTGAAAAA
423 ATGAGTCGA-TTTTTTTTTGAAAAA
* *
48231 CAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATT
1 CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
*
48296 TTGAAAACAGAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCATTTCTCGCAATATGAG
66 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
* *
48361 TTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAA
131 TTGAATTTTGAAACATAAATT-AGAAA-AAAAA-T---AATACCTCAACGTGTCCCGAGGCTCAA
* *
48426 CTCACCTCCCGCATTATGGGTTAATTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTG
190 CTCACCTCCCGCAATATGAGTTAA---TTTTTGAAA-ATAGAAATTGAAAATACCTCAGCATGTG
* *
48491 AAC-CGAGGTTCAACTCACCT-CTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATAC
251 -ACTCGAGGCTCAACTCACCTACTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATAC
*
48554 CTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG
315 CTCAACGTGTCTTGAGGCTCAACTCA-TACTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG
* * *
48619 AAATTACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTGTTTTTTGA
379 AAATTACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTCGATTT-TTTTTTGA
48684 AAAA
443 AAAA
* *
48688 CAGAAATTGAAAATGCCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATT
1 CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
*
48753 TTGAAAACAGAAATTGAAATTACCTCAACGCGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
66 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
**
48818 TTGAATTTTG----A-AAA-TAGAAATAAAAAT--TACCTCAACGTGTCTTGAGGCTCAACTCAC
131 TTGAATTTTGAAACATAAATTAGAAA-AAAAATAATACCTCAACGTGTCCCGAGGCTCAACTCAC
*
48875 CTCCCGCATTATGAGTTAATTTTGTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAA
195 CTCCCGCAATATGAGTTAA------TTTTTGAAA-ATAGAAATTGAAAATACCTCAGCATGTG-A
*
48940 C-CGAGGCTCAACTCACCT-CTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCT
252 CTCGAGGCTCAACTCACCTACTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCT
* *
49003 CAACGTGTCTTGAGGTTCAACTCATACTCGCAATATGAGTCGATTTTTTTTTTGAAAAACAGAAA
317 CAACGTGTCTTGAGGCTCAACTCATACTCGCAATATGAGTTGA-----TTTTTG-AAAACAGAAA
* * * * * *
49068 TTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA----ATTTT
376 TTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTCGATTTTTTTTT
49129 G-AAAA
441 GAAAAA
* ***
49134 CAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
* * * *** **
49199 TTG-AAACATAAATTAAGAAAGAAAATTTGCCAATACCTCAGCGTGCCCCAAGGCTCAACTCACC
66 TTGAAAACAGAAATT------G-AAA--T-----TACCTCAACGTGTCTTGAGGCTCAACTCATT
* * ***** * *** * *
49263 TCCCGCATTATGAGTT-AATTTTGTTTTTTGAAAGATAGAAATTGAA-AATACCTCAGCATGTGA
117 TCTCGCAATATGAGTTGAATTTTGAAACAT-AAA-TTAGAAAAAAAATAATACCTCA--ACGTGT
* * * * *
49326 ACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTC
178 CCCGAGGCTCAACTCACCTCCCGCAATATGAGTTAATTTTTGAAAATAGAAATTGAAAATACCTC
* * * * * *
49391 A--ACGTGTCTTGAGGTTCAACTCA-TTACTCGCAATATGAGTCGATTTTTTTTGAAAAACAGAA
243 AGCATGTGACTCGAGGCTCAACTCACCTACTCGCAATATGAGTTGA---TTTTTG-AAAACAGAA
* * * * *
49453 ATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAA
304 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TACTCGCAATATGAGTTGATTTTTGAA
** * *
49518 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
368 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTCG-A
**
49583 TTTTGAAACATAAATT-AAGAAA
432 TTTT------T-TTTTGAA-AAA
* ** * ** ** * *
49605 CAAAAATTGCCAATACCTCAGCGT-TCCCCGAGGCTCAACTCACCTCCCGCATTATGAGTT-AAT
1 CAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-
* * * * * **
49668 TTTGTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTC
64 ------TTTTGAAA-ACAGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTC
* **
49732 TCGCAATATGAGTTGATTTTTGAAAACATAAATT-G------AA-AATACCTCAACGT-TCTTGA
119 TCGCAATATGAGTTGAATTTTG-AAACATAAATTAGAAAAAAAATAATACCTCAACGTGTCCCGA
* * * *
49788 GGTTCAACTCA-TTACTCGCAATATGAGTTGAA-TTTTGAAAATAGAAATTGAAATTACCTCAGC
183 GGCTCAACTCACCT-CCCGCAATATGAGTT-AATTTTTGAAAATAGAAATTGAAAATACCTCAGC
* * ** * * *
49851 --GTGTCTTGAGGCTCAACTC-TTTGCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATTG-AA
246 ATGTGACTCGAGGCTCAACTCACCTACTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAA
*
49912 ATACCTC-ACGTGTCTTGAGGCTCAACTCAT-CTCGCAATATGAGTTGA-TTTTG-AAACATAAA
311 ATACCTCAACGTGTCTTGAGGCTCAACTCATACTCGCAATATGAGTTGATTTTTGAAAACAGAAA
* * *
49973 TTGAAATTACCTCAGCGTG-C--GAGGCTCAACTCACCTC-CGC-ATATGAGT-TAATTTTTTTT
376 TTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTCGATTTTTTTTT
50032 G-AAAA
441 GAAAAA
* * ** *
50037 TAGAAATTGAAAATACCTCAGCATGTGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 CAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT
** * * * *
50101 TTTGAAAACTTAAATTGAAAATACCTCAACATGTCTTGAGGTTCAACTCATTACTCGCAATATGA
65 TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* **
50166 GTTGAATTTTGAAAACAGAAATT-G-----AAAT--TACCTCAACGTGTCTTGAGGCTCAACTCA
130 GTTGAATTTTG-AAACATAAATTAGAAAAAAAATAATACCTCAACGTGTCCCGAGGCTCAACTCA
** ** * * * *
50223 TTTCTTGCAATATGAGTTGAA-TTTTGAAAATAGAAA-TAAAAATTACCTCA--ACGTGTCTTGA
194 CCTCCCGCAATATGAGTT-AATTTTTGAAAATAGAAATTGAAAA-TACCTCAGCATGTGACTCGA
* ** * * *
50284 GACTCAACTCATTTA-TCGTAATATGAGTTGAATTTTGAAAATAGAAAT
257 GGCTCAACTCACCTACTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
50332 AAAAATATCA
Statistics
Matches: 2570, Mismatches: 280, Indels: 391
0.79 0.09 0.12
Matches are distributed among these distances:
422 1 0.00
423 64 0.02
424 105 0.04
425 23 0.01
426 8 0.00
432 52 0.02
433 6 0.00
434 1 0.00
440 4 0.00
442 8 0.00
443 3 0.00
444 59 0.02
445 10 0.00
446 85 0.03
447 158 0.06
448 5 0.00
449 17 0.01
450 11 0.00
451 28 0.01
452 73 0.03
453 14 0.01
454 6 0.00
455 51 0.02
456 9 0.00
457 335 0.13
458 76 0.03
459 250 0.10
460 94 0.04
461 195 0.08
462 27 0.01
463 96 0.04
464 262 0.10
465 72 0.03
466 58 0.02
467 40 0.02
468 71 0.03
469 3 0.00
470 10 0.00
471 54 0.02
472 49 0.02
473 40 0.02
476 5 0.00
477 5 0.00
478 11 0.00
479 9 0.00
480 7 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (446 bp):
CAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
TTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
TTGAATTTTGAAACATAAATTAGAAAAAAAATAATACCTCAACGTGTCCCGAGGCTCAACTCACC
TCCCGCAATATGAGTTAATTTTTGAAAATAGAAATTGAAAATACCTCAGCATGTGACTCGAGGCT
CAACTCACCTACTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTC
TTGAGGCTCAACTCATACTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAG
CGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTCGATTTTTTTTTGAAAAA
Done.