Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1402
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37334
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Found at i:524 original size:34 final size:34
Alignment explanation
Indices: 486--555 Score: 97
Period size: 35 Copynumber: 2.1 Consensus size: 34
476 CATCTCCGGA
*
486 GCTTGG-AAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTC-AAGATAT
* *
520 GCTTGGCAAATATGGAAGGGGATCTTCAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAGATAT
554 GC
1 GC
556 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
34 15 0.47
35 17 0.53
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (34 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAGATAT
Found at i:5715 original size:35 final size:35
Alignment explanation
Indices: 5676--5747 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
5666 CATCTCCGGA
* *
5676 GCTTGGAAAATATGGAAAGTAATCTTCAAGGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * * *
5711 GCTTGGCAAATATTGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
5746 GC
1 GC
5748 GATCCCAGAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:9718 original size:85 final size:85
Alignment explanation
Indices: 9587--10361 Score: 685
Period size: 85 Copynumber: 9.1 Consensus size: 85
9577 CCCTGCTGCT
* * * * * * *
9587 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATAGTGTCCGAGGCTCCCACACATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG
* * *
9651 CACCAAGGTGCCAATGCTGCT
65 CACCAAGGTGCCGATGGTGCC
* * * *
9672 CGAGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCGGCACGA-CCA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCA
** * *
9734 AGGGCCTAGGTTACCGATGGTGCC
63 AGCACCAAGG-TGCCGATGGTGCC
* **
9758 CGAGGCTCCGGCACGACCAAGGGCCTAGGTT-CCTGATGGTGTTCGAGGCTCCCGCACATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC-GATGGTGCCCGAGGCTCCCGCACATCCAAG
9822 CACCAAGGTGCCGATGGTGCC
65 CACCAAGGTGCCGATGGTGCC
* * * **
9843 CGAGGCTCCTGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCC-AGGCTCTTGCACATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACATCCAAG
9907 CACCAAGGTGCCGATGGTGCC
65 CACCAAGGTGCCGATGGTGCC
* * * ** *
9928 CGTGGCTCCCGCACGACAAAGGGCCTAGG-TGCCGATGG-CCCCGAGGCTTTCGCATGA-CCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-CATCCAAG
** *
9990 GGCCTAGGGTGCCGATGGTGCC
65 CACC-AAGGTGCCGATGGTGCC
* * * * * * *
10012 CGAGGCTCCCGCACGACCAGGGGCTTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACAACTAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
* *
10077 GCCTAGGTTGCCGATGGT-CC
66 ACCAAGG-TGCCGATGGTGCC
* * * * *
10097 TGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCTCGCACGA-CCACG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
** *
10161 -GGCTAGGTTGCCGATGGTGCC
65 CACCAAGG-TGCCGATGGTGCC
* * * * *
10182 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGATGTCCGAGGCTCCCGCACGA-CCGAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
** * *
10246 GGCCTAGGTTGCCGATGGTGGC
65 CACCAAGG-TGCCGATGGTGCC
* * * * ** *
10268 CGAAGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTCTTGCATATCCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAA-G
* * *
10333 CACGAAGGTGCCGATGCTGCT
65 CACCAAGGTGCCGATGGTGCC
10354 CGAGGCTC
1 CGAGGCTC
10362 ACGAACCACT
Statistics
Matches: 577, Mismatches: 92, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
82 3 0.01
83 16 0.03
84 67 0.12
85 300 0.52
86 185 0.32
87 6 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (85 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
ACCAAGGTGCCGATGGTGCC
Found at i:9825 original size:128 final size:126
Alignment explanation
Indices: 9587--10361 Score: 695
Period size: 128 Copynumber: 6.1 Consensus size: 126
9577 CCCTGCTGCT
* * * * * * *
9587 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATAGTGTCCGAGGCTCCCACAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * *
9650 GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCC
64 GGGCCTAGGTTCCGATGGTGC-CGAGGCTCCCGCACATCC-AAGCACCAAGGTGCCGATGGTGCC
* * *
9715 CGAGGCTCCGGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
9780 GCCTAGGTTCCTGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
66 GCCTAGGTTCC-GATGGTG-CCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
* * * **
9843 CGAGGCTCCTGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCC-AGGCTCTTGCAC-ATCCAA
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCCGAGGCTCCCGCACGA-CCAA
** * * * * ** * *
9906 GCACCAAGGTGCCGATGGTGCCCGTGGCTCCCGCACGA-CAAAGGGCCTAGGTGCCGATGG-CCC
64 GGGCCTAGGTTCCGATGGTG-CCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
** * * *
9969 CGAGGCTTTCGCATGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * ** *
10034 GCTTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACAACTAGGGGCCTAGGTTGCCGATGGT-CC
66 GCCTA-GGTTCCGATGGTG-CCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCC
* * * * *
10097 TGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCTCGCACGACCACGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * *
10162 G-CTAGGTTGCCGATGGTGCCTGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGATGTC
66 GCCTAGGTT-CCGATGGTGCC-GAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
* * * *
10225 CGAGGCTCCCGCACGACCGAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCCCGCACGATCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** * * * *
10290 GCCTAGGTTGCCGATGGTGTCTGAGGCTCTTGCATATCCAAGGCACGAAGGTGCCGATGCTGCT
66 GCCTAGGTT-CCGATGGTG-CCGAGGCTCCCGCACATCCAA-GCACCAAGGTGCCGATGGTGCC
10354 CGAGGCTC
1 CGAGGCTC
10362 ACGAACCACT
Statistics
Matches: 541, Mismatches: 85, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
125 3 0.01
126 58 0.11
127 123 0.23
128 273 0.50
129 78 0.14
130 6 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (126 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTCCGATGGTGCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
Found at i:10332 original size:43 final size:43
Alignment explanation
Indices: 9587--10318 Score: 747
Period size: 43 Copynumber: 17.2 Consensus size: 43
9577 CCCTGCTGCT
* * * * * *
9587 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATAGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
9630 CGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
9672 CGAGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* *
9715 CGAGGCTCCGGCACGACCAAGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* **
9758 CGAGGCTCCGGCACGACCAAGGGCCTAGGTT-CCTGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC-GATGGTGCC
** *
9801 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
9843 CGAGGCTCCTGCACGACCAGGGGCCTAGGTTACCGATGGTGTCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CC
** ** *
9887 C-AGGCTCTTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
9928 CGTGGCTCCCGCACGACAAAGGGCCTAGG-TGCCGATGG-CCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * *
9969 CGAGGCTTTCGCATGACCAAGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
10012 CGAGGCTCCCGCACGACCAGGGGCTTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
10055 CGAGGCTCCCGCACAACTAGGGGCCTAGGTTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
10097 TGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
10140 CGAGGCTCTCGCACGACCACGGG-CTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
10182 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGATGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
10225 CGAGGCTCCCGCACGACCGAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
10268 CGAAGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
10311 TGAGGCTC
1 CGAGGCTC
10319 TTGCATATCC
Statistics
Matches: 585, Mismatches: 88, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
41 29 0.05
42 190 0.32
43 362 0.62
44 4 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:26039 original size:13 final size:13
Alignment explanation
Indices: 26021--26048 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26011 CGCTGCTGCT
26021 ACGCTACCAGGCG
1 ACGCTACCAGGCG
26034 ACGCTACCAGGCG
1 ACGCTACCAGGCG
26047 AC
1 AC
26049 ATTCATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.39, G:0.29, T:0.07
Consensus pattern (13 bp):
ACGCTACCAGGCG
Found at i:26421 original size:56 final size:55
Alignment explanation
Indices: 26322--26426 Score: 149
Period size: 56 Copynumber: 1.9 Consensus size: 55
26312 ACATGGACAA
* * *
26322 TTCATTCATTGTTGGTACCGACATGCAACGGTATCTGAATTCTAGCTTTGGACGG
1 TTCATTCATTGTGGGTACCGACATGCAACGGTATCTAAATTCTACCTTTGGACGG
*
26377 TTCATTCATAT-TGGGTACCGAACATGTAACGGTATCTAAATTCTACCTTT
1 TTCATTCAT-TGTGGGTACCG-ACATGCAACGGTATCTAAATTCTACCTTT
26427 TGGGATTGGG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
55 17 0.39
56 27 0.61
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (55 bp):
TTCATTCATTGTGGGTACCGACATGCAACGGTATCTAAATTCTACCTTTGGACGG
Found at i:29185 original size:42 final size:43
Alignment explanation
Indices: 29044--30091 Score: 671
Period size: 43 Copynumber: 24.3 Consensus size: 43
29034 ATATGCAAGA
* * * * *
29044 CCTCGGACACCAGTC-GCAACTTAAGCCCTTAGTCTGTGCGGAAG
1 CCTCGGGCACCA-TCGGCAACCTAGGCCCTTGGTC-GTGCGGGAG
** *
29088 CCTCGACCACCA-C-CCAAACCTAGGCCCTCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGC-AACCTAGGCCCT-TGGTCGTGCGGGAG
* * *
29131 CCTCGGGCACCATCGGTAACTTAGGCCCTTGGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
29174 -CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGGTGC-GAAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC-GTGCGGGAG
* * *
29216 CCTCCGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
29259 -CTCAGACACCATC-G-AACCTAGGCCCTTGTCTTGGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGG-CC----CTTGGTCGTGCGGGAG
*
29304 -CTCGGG-ACCCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
29346 CCTCGGG-ACCATTCGGCAACCTA-GCCCACTGGTCGTTGCTGGGAG
1 CCTCGGGCACCA-TCGGCAACCTAGGCCC-TTGGTCG-TGC-GGGAG
* * *
29391 CCTC-GGCACCATCGGCACCCCTAGGCCCCTGTTCGTTGCAGGGAAG
1 CCTCGGGCACCATCGGCA-ACCTAGGCCCTTGGTCG-TGC-GGG-AG
* *
29437 CCTCGGGCCACCATCGGCACCACTAGGACCC-TGGTTGTGC-GGAG
1 CCTCGGG-CACCATCGGCAAC-CTAGG-CCCTTGGTCGTGCGGGAG
* * *
29481 CCTCGAGCACCATCGGCACCCTA--CCCTTGGTCGTGGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT-GCGGGAG
29523 CCTCGGG-ACCATCGGC-ACCTAGGCCCTTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCC-TTGGTCGTGCGGGAG
* * **
29565 CCTCGGGCACCATTC-GC-ATCTTGGTGCTTGGAT-GTGCGAGGAG
1 CCTCGGGCACCA-TCGGCAACCTAGGCCCTTGG-TCGTGCG-GGAG
* * *
29608 CCT-GGGACACCATCGGTAAGCTAGGCCCCTGGTCGGTGCGGGAG
1 CCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTC-GTGCGGGAG
* * *
29652 CCTTCGCGGCACCATCGGC-ACCTTGGTGCTTTGGAT-GTG-GTGGAG
1 CC-TCG-GGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG-GGAG
* * * *
29697 CCTCAGGCATCATCAGCACCCTA-GCCC-TGGTGCGTGCGGGAAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-CGTGCGGG-AG
* *
29740 CCT-GGGCA-CATCGGCACCCTAAGGCCCCT-GTCGTGCGGG-G
1 CCTCGGGCACCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAG
* * *
29780 CC-C-GGCACCATCGGCACCCTAGGCCCTTGGTTGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
29821 CCTCTGG-ACCATC-G-TACCTAGGCCCTT-GTCGTGGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT-GCGGGAG
* * ** *
29861 CCTAGGGCA-CA-CGGC-ACCTTGGTGCTTGGAT-GT-CGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * *
29900 -CTTGGCGACACCATTCGGTAACCTAGGCCCCTGGTC-TGCGGGAG
1 CCTCGG-G-CACCA-TCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* ** *
29944 CCTCGGGCTACCATCGGC-ACCTTGGGGCTTGGAT-GTCCGGGAG
1 CCTCGGGC-ACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
** * * *
29987 CCTCAGACCACCATCGACAA-CTAGGCCCTTGTTCGTGCCGGAG
1 CCTC-GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
30030 CCATCGGGCACCATCTGGTAACCTAAAGCCATTTGGTCGTGCGAGAG
1 CC-TCGGGCACCATC-GGCAACCT-AGGCC-CTTGGTCGTGCGGGAG
30077 CCTCGCGGCACCATC
1 CCTCG-GGCACCATC
30092 AGCACCTTGG
Statistics
Matches: 803, Mismatches: 111, Indels: 177
0.74 0.10 0.16
Matches are distributed among these distances:
38 4 0.00
39 24 0.03
40 77 0.10
41 38 0.05
42 152 0.19
43 231 0.29
44 98 0.12
45 81 0.10
46 34 0.04
47 41 0.05
48 20 0.02
49 3 0.00
ACGTcount: A:0.16, C:0.34, G:0.31, T:0.19
Consensus pattern (43 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:29318 original size:130 final size:127
Alignment explanation
Indices: 29079--29834 Score: 458
Period size: 130 Copynumber: 5.9 Consensus size: 127
29069 CCCTTAGTCT
* *
29079 GTGCGGAAGCCTCGACCACCA--C-CCAAACCTAGGCCCTCTGGTCGTGCGGGAGCCTCGGGCAC
1 GTGCGGAAGCCTCGA-CACCATTCGGC-AACCTAGGCCCACTGGTCGTGCGGGAGCCTC-GGCAC
* *
29141 CATCGGTAACTTAGGCCCTTGGTCGTGCGAGAGCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
63 CATC-GTAACCTAGGCCCTTGGTCGTGCGAGAGCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
29206 C
127 C
*
29207 GGTGC-GAAGCCTCCGACACCA-TCGGCAACCTAGGCCC-CTGGTCGTGCGGGAG-CTCAGACAC
1 -GTGCGGAAGCCT-CGACACCATTCGGCAACCTAGGCCCACTGGTCGTGCGGGAGCCTC-GGCAC
29268 CATCG-AACCTAGGCCCTTGTCTTGGTCGTGCGAGAGCTCGGG-ACCCATCGGCAACCTAGGCCC
63 CATCGTAACCTAGG-CC----CTTGGTCGTGCGAGAGCTCGGGCA-CCATCGGCAACCTAGGCCC
29331 CTGGTC
122 CTGGTC
* **
29337 GTGCGGGAGCCTCGGGACCATTCGGCAACCTA-GCCCACTGGTCGTTGCTGGGAGCCTCGGCACC
1 GTGCGGAAGCCTCGACACCATTCGGCAACCTAGGCCCACTGGTCG-TGC-GGGAGCCTCGGCACC
* * * * * * *
29401 ATCGGCACCCCTAGGCCCCTGTTCGTTGCAGGGAAGCCTCGGGCCACCATCGGCACCACTAGGAC
64 ATC-GTA-ACCTAGGCCCTTGGTCG-TGC-GAG-AG-CTCGGG-CACCATCGGCAAC-CTAGGCC
*
29466 CCTGGTT
121 CCTGGTC
* * * *
29473 GTGCGG-AGCCTCGAGCACCA-TCGGCACCCTA--CCC-TTGGTCGTGGCGAGAGCCTCGGGACC
1 GTGCGGAAGCCTCGA-CACCATTCGGCAACCTAGGCCCACTGGTCGT-GCGGGAGCCTCGGCACC
** * * * ** *
29533 ATCGGCACCTAGGCCCTTTGGTCGTGCGGGAGCCTCGGGCACCATTC-GC-ATCTTGGTGCTTGG
64 ATCGTAACCTAGGCCC-TTGGTCGTGCGAGAG-CTCGGGCACCA-TCGGCAACCTAGGCCCCTGG
29596 AT-
126 -TC
* * * *
29598 GTGCGAGGAGCCTGGGACACCA-TCGGTAAGCTAGGCCC-CTGGTCGGTGCGGGAGCCTTCGCGG
1 GTGCG-GAAGCCT-CGACACCATTCGGCAACCTAGGCCCACTGGTC-GTGCGGGAGCC-T--CGG
** * * * * * * * *
29661 CACCATCGGCACCTTGGTGCTTTGGAT-GTG-GTGGAGCCTCAGGCATCATCAGCACCCTA-G-C
60 CACCATCGTAACCTAGG-CCCTTGG-TCGTGCG-AGAG-CTCGGGCACCATCGGCAACCTAGGCC
29722 CCTGGTGC
121 CCTGGT-C
* * *
29730 GTGCGGGAAGCCTGGGCA-CA-TCGGCACCCTAAGGCCC-CT-GTCGTGCGGG-GCC-CGGCACC
1 GTGC-GGAAGCCTCGACACCATTCGGCAACCT-AGGCCCACTGGTCGTGCGGGAGCCTCGGCACC
* * * *
29789 ATCGGCACCCTAGGCCCTTGGTTGTGCGAGAGCCTCTGG-ACCATCG
64 ATC-GTAACCTAGGCCCTTGGTCGTGCGAGAG-CTCGGGCACCATCG
29835 TACCTAGGCC
Statistics
Matches: 511, Mismatches: 65, Indels: 108
0.75 0.10 0.16
Matches are distributed among these distances:
123 6 0.01
124 27 0.05
125 27 0.05
126 5 0.01
127 36 0.07
128 43 0.08
129 60 0.12
130 105 0.21
131 31 0.06
132 84 0.16
133 19 0.04
134 12 0.02
135 33 0.06
136 23 0.05
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18
Consensus pattern (127 bp):
GTGCGGAAGCCTCGACACCATTCGGCAACCTAGGCCCACTGGTCGTGCGGGAGCCTCGGCACCAT
CGTAACCTAGGCCCTTGGTCGTGCGAGAGCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
Done.