genome.fa.s1514.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold209
Parameters: 2 7 7 80 10 50 1000
Length:  37637

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270--1441	93	1.8	93	94	0	308	27	30	21	20	1.98
1262--1437	46	3.8	46	81	10	214	28	29	21	21	1.98
3803--3852	15	3.4	15	83	8	59	62	12	16	10	1.55
6776--6946	93	1.8	93	85	0	243	28	27	21	22	1.99
6768--6943	46	3.8	45	75	15	153	29	27	21	22	1.99
9091--9329	27	8.9	27	86	2	320	28	24	8	38	1.85
9093--9329	107	2.2	108	89	2	352	28	24	8	38	1.85
9079--9329	134	1.9	133	88	2	369	27	25	8	38	1.85
9065--9349	134	2.1	133	82	3	367	29	23	9	36	1.87
9328--9513	54	3.5	52	80	5	176	38	20	10	30	1.86
9369--9538	81	2.1	81	84	2	225	41	20	7	30	1.80
9361--9538	54	3.3	54	82	2	196	41	20	7	30	1.80
9361--9514	27	5.7	27	85	3	211	40	21	7	30	1.81
9504--9596	27	3.4	27	78	11	98	43	17	6	33	1.74
9516--9601	27	3.1	27	82	11	111	39	13	9	37	1.78
9646--9697	27	1.9	27	84	7	70	38	23	21	17	1.93
10528--10610	25	3.4	24	83	8	87	26	21	24	27	1.99
10553--10624	25	3.0	23	84	10	81	27	22	23	26	1.99
10745--10878	42	3.2	42	96	2	243	32	14	19	33	1.92
10902--10984	31	2.7	31	90	1	123	27	14	27	30	1.95
11837--11876	21	1.9	21	100	0	80	32	5	17	45	1.70
13657--13823	46	3.6	45	75	10	149	21	19	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24352--24391	21	2.0	20	85	5	53	10	32	25	32	1.89
26840--27014	46	3.8	45	76	7	181	29	28	19	22	1.98
26848--27019	93	1.8	93	91	0	281	29	29	19	22	1.98
28674--28801	28	4.5	28	88	2	175	28	12	25	32	1.92
28674--28801	57	2.2	57	88	2	186	28	12	25	32	1.92
36660--36787	28	4.5	28	88	2	175	28	12	25	32	1.92
36660--36787	57	2.2	57	88	2	186	28	12	25	32	1.92

Tables:   1

The End!