Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1039

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16030
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31


Found at i:11077 original size:23 final size:23

Alignment explanation


    Indices: 11030--11077  Score: 62
    Period size: 23  Copynumber: 2.1  Consensus size: 23

      11020 ATAGTAAAAA

                      *       *    
      11030 TATATTTTATTATTTAAATAGTT
          1 TATATTTTATAATTTAAAGAGTT

                                    
      11053 TATATTTTATAATTTTAAAGA-TT
          1 TATATTTTATAA-TTTAAAGAGTT

              
      11076 TA
          1 TA

      11078 AATTAAATTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  23   15  0.68
  24    7  0.32

ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58


Consensus pattern (23 bp):   
TATATTTTATAATTTAAAGAGTT
Done.