Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1338
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58377
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Found at i:6 original size:1 final size:1
Alignment explanation
Indices: 1--29 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
30 TTCATGTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:7217 original size:12 final size:11
Alignment explanation
Indices: 7187--7213 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7177 TTTCTTTTGC
7187 CTTTTCAAAGG
1 CTTTTCAAAGG
7198 CTTTTCAAAGG
1 CTTTTCAAAGG
7209 CTTTT
1 CTTTT
7214 TCAAGTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (11 bp):
CTTTTCAAAGG
Found at i:7310 original size:19 final size:17
Alignment explanation
Indices: 7266--7336 Score: 67
Period size: 19 Copynumber: 4.1 Consensus size: 17
7256 CTCTTGCCTC
*
7266 TCTTTTC-TTTTTAT-T
1 TCTTTTCTTTTTTCTCT
7281 TCATTTTCTTTTTTCTCT
1 TC-TTTTCTTTTTTCTCT
7299 TGCTTGTTCTTTTTTCT-T
1 T-CTT-TTCTTTTTTCTCT
7317 TCTTTTCTTTGTTTTCTCT
1 TCTTTTC-TT-TTTTCTCT
7336 T
1 T
7337 TACAAAGATG
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
15 2 0.04
16 8 0.17
17 11 0.23
18 12 0.26
19 14 0.30
ACGTcount: A:0.03, C:0.18, G:0.04, T:0.75
Consensus pattern (17 bp):
TCTTTTCTTTTTTCTCT
Found at i:7336 original size:16 final size:16
Alignment explanation
Indices: 7263--7337 Score: 66
Period size: 16 Copynumber: 4.5 Consensus size: 16
7253 TGCCTCTTGC
7263 CTCTCTTTTCTTTTTAT
1 CTCTCTTTTCTTTTT-T
7280 -T-TCATTTTCTTTTTT
1 CTCTC-TTTTCTTTTTT
7295 CTCTTGCTTGTTCTTTTTT
1 CTC-T-CTT-TTCTTTTTT
*
7314 CTTTCTTTTCTTTGTTT
1 CTCTCTTTTCTTT-TTT
7331 -TCTCTTT
1 CTCTCTTT
7338 ACAAAGATGT
Statistics
Matches: 49, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
15 3 0.06
16 24 0.49
17 6 0.12
18 4 0.08
19 12 0.24
ACGTcount: A:0.03, C:0.20, G:0.04, T:0.73
Consensus pattern (16 bp):
CTCTCTTTTCTTTTTT
Found at i:17047 original size:30 final size:30
Alignment explanation
Indices: 17013--17109 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
17003 AGCTCACTCC
17013 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
17043 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
17073 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
17103 TAGCTCA
1 TAGCTCA
17110 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:18837 original size:13 final size:12
Alignment explanation
Indices: 18819--18856 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
18809 AAAAGAGAAG
18819 AAATTCAGAAAAA
1 AAATTC-GAAAAA
18832 AAATTC-AAAAA
1 AAATTCGAAAAA
18843 AAA-TCGAAAAA
1 AAATTCGAAAAA
18854 AAA
1 AAA
18857 AAAAATGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.08
11 16 0.67
13 6 0.25
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (12 bp):
AAATTCGAAAAA
Found at i:18869 original size:15 final size:16
Alignment explanation
Indices: 18838--18872 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
18828 AAAAAAATTC
18838 AAAAAAAATCGAAAAA
1 AAAAAAAATCGAAAAA
18854 AAAAAAAAT-GACAAAA
1 AAAAAAAATCGA-AAAA
18870 AAA
1 AAA
18873 TCGAGTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 2 0.11
16 16 0.89
ACGTcount: A:0.83, C:0.06, G:0.06, T:0.06
Consensus pattern (16 bp):
AAAAAAAATCGAAAAA
Found at i:19835 original size:37 final size:37
Alignment explanation
Indices: 19784--19854 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
19774 CATTCTTGTA
19784 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
19821 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
19855 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:19854 original size:6 final size:6
Alignment explanation
Indices: 19794--19843 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
19784 AAGAGAAAAC
*
19794 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
19843 A
1 A
19844 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:19936 original size:11 final size:12
Alignment explanation
Indices: 19904--19934 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
19894 TTGAGAGAAC
19904 TTGAAAAAGCCT
1 TTGAAAAAGCCT
19916 TTGAAAAAGCCT
1 TTGAAAAAGCCT
19928 TTGAAAA
1 TTGAAAA
19935 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:22113 original size:30 final size:30
Alignment explanation
Indices: 22079--22175 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
22069 AGCTCACTCC
22079 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
22109 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
22139 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
22169 TAGCTCA
1 TAGCTCA
22176 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:27691 original size:10 final size:11
Alignment explanation
Indices: 27663--27703 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
27653 CGTATGCAAA
*
27663 TTTTTTTCAAT
1 TTTTTTTTAAT
27674 TTTTTTTTAAT
1 TTTTTTTTAAT
*
27685 TTTTTTTTGAT
1 TTTTTTTTAAT
27696 TTTTTTTT
1 TTTTTTTT
27704 GAATCTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (11 bp):
TTTTTTTTAAT
Found at i:31021 original size:14 final size:14
Alignment explanation
Indices: 31004--31054 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
30994 AAAAAAATAT
31004 AAAAAAAATTCAAAAA
1 AAAAAAAATTC--AAA
***
31020 AAAAAAAATTTTGA
1 AAAAAAAATTCAAA
31034 AAAAAAAATTCAAA
1 AAAAAAAATTCAAA
31048 AAAAAAA
1 AAAAAAA
31055 GTTTGTATTC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 19 0.66
16 10 0.34
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (14 bp):
AAAAAAAATTCAAA
Found at i:31113 original size:13 final size:13
Alignment explanation
Indices: 31095--31120 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31085 ATTTAGTATT
31095 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
31108 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
31121 TTCGGAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
GAAGAAAAAAAAA
Found at i:31160 original size:20 final size:20
Alignment explanation
Indices: 31136--31174 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
31126 AATTAAAACA
*
31136 AAAAAAGAAGAAAAAAAAATC
1 AAAATAGAA-AAAAAAAAATC
*
31157 AAAATTGAAAAAAAAAAA
1 AAAATAGAAAAAAAAAAA
31175 GTGATTGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08
Consensus pattern (20 bp):
AAAATAGAAAAAAAAAAATC
Found at i:31172 original size:33 final size:34
Alignment explanation
Indices: 31092--31175 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 34
31082 TGTATTTAGT
**
31092 ATTGAAGAAAAAAAAAGAAGAAAAAAAAATTCGGA
1 ATTGAA-AAAAAAAAAGAAGAAAAAAAAATTCAAA
31127 ATT-AAAACAAAAAAAGAAGAAAAAAAAA-TCAAA
1 ATTGAAAA-AAAAAAAGAAGAAAAAAAAATTCAAA
31160 ATTGAAAAAAAAAAAG
1 ATTGAAAAAAAAAAAG
31176 TGATTGAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
33 16 0.36
34 26 0.58
35 3 0.07
ACGTcount: A:0.74, C:0.04, G:0.12, T:0.11
Consensus pattern (34 bp):
ATTGAAAAAAAAAAAGAAGAAAAAAAAATTCAAA
Found at i:32090 original size:21 final size:20
Alignment explanation
Indices: 32061--32106 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
32051 AATCTTGAAT
*
32061 GAAATTGAGAGAAGAAAAAAA
1 GAAAATGAGAG-AGAAAAAAA
* *
32082 GAAAATGAGAGTGAGAAAAA
1 GAAAATGAGAGAGAAAAAAA
32102 GAAAA
1 GAAAA
32107 AAGAATTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (20 bp):
GAAAATGAGAGAGAAAAAAA
Found at i:32133 original size:12 final size:12
Alignment explanation
Indices: 32113--32148 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32103 AAAAAAGAAT
*
32113 TTGAGATTGAGA
1 TTGATATTGAGA
*
32125 TTGATATTGATA
1 TTGATATTGAGA
32137 TTGATATTGAGA
1 TTGATATTGAGA
32149 AAAAAATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (12 bp):
TTGATATTGAGA
Found at i:36860 original size:17 final size:18
Alignment explanation
Indices: 36828--36863 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
36818 AGCATGTAAG
*
36828 AAAGAATTTGAAAGAAAA
1 AAAGAAATTGAAAGAAAA
36846 AAAGAAATT-AAAGAAAA
1 AAAGAAATTGAAAGAAAA
36863 A
1 A
36864 GAGTGTGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (18 bp):
AAAGAAATTGAAAGAAAA
Found at i:36995 original size:39 final size:38
Alignment explanation
Indices: 36949--37033 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 38
36939 GAGACTGAAG
*
36949 AAAGAAAAGATGATGAGCTAGAATCAAGAGAAGTACA-AA
1 AAAGAAAAGATGATGAGCCAGAATCAAGAGAAG--CAGAA
36988 AAAGAAAAGATGATGAGCCAGAATCAAGAGAAGCAGAA
1 AAAGAAAAGATGATGAGCCAGAATCAAGAGAAGCAGAA
37026 AAAGAAAA
1 AAAGAAAA
37034 TGAAAGTGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
37 2 0.05
38 10 0.23
39 32 0.73
ACGTcount: A:0.59, C:0.08, G:0.24, T:0.09
Consensus pattern (38 bp):
AAAGAAAAGATGATGAGCCAGAATCAAGAGAAGCAGAA
Found at i:47396 original size:30 final size:30
Alignment explanation
Indices: 47362--47458 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
47352 TAAACTAAAA
*
47362 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
47392 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
47422 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
47451 ATGAGCTA
1 -TGAGCTA
47459 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:49650 original size:12 final size:12
Alignment explanation
Indices: 49635--49665 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
49625 TTCTTTTTGC
49635 TTTTCAAAGGCT
1 TTTTCAAAGGCT
49647 TTTTCAAAGGCT
1 TTTTCAAAGGCT
49659 TTTTCAA
1 TTTTCAA
49666 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:49742 original size:6 final size:6
Alignment explanation
Indices: 49726--49775 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
49716 TTTCTTTTTA
*
49726 TTTCAT TTTCTT TTTCTT CTCTTGCTT TTTCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT -T-TT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
49775 T
1 T
49776 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 10 0.26
6 20 0.51
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:49758 original size:37 final size:37
Alignment explanation
Indices: 49715--49785 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
49705 CTTGCCTCTC
49715 TTTTCTTTTT-ATTTCATTTTCTTT-TTCTTCTCTTGCT
1 TTTTCTTTTTCATTTC-TTTTCTTTGTT-TTCTCTTGCT
*
49752 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTT
49786 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (37 bp):
TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTTGCT
Found at i:49786 original size:16 final size:16
Alignment explanation
Indices: 49711--49771 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
49701 GCCTCTTGCC
*
49711 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
49727 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
49743 TCTC-TTGCTTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
49759 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
49772 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.30
16 17 0.46
17 9 0.24
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:50709 original size:30 final size:30
Alignment explanation
Indices: 50673--50729 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
50663 GACTTTTCAC
*
50673 TTTTTTTTTATACTTCGATTTTTTTTTTTT
1 TTTTTTTTTATACTTCAATTTTTTTTTTTT
* **
50703 TTTTTTTTTTTTTTTCAATTTTTTTTT
1 TTTTTTTTTATACTTCAATTTTTTTTT
50730 CAATTTCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.09, C:0.05, G:0.02, T:0.84
Consensus pattern (30 bp):
TTTTTTTTTATACTTCAATTTTTTTTTTTT
Found at i:50724 original size:12 final size:12
Alignment explanation
Indices: 50709--50735 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50699 TTTTTTTTTT
50709 TTTTTTTTTCAA
1 TTTTTTTTTCAA
50721 TTTTTTTTTCAA
1 TTTTTTTTTCAA
50733 TTT
1 TTT
50736 CTTCTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:50729 original size:1 final size:1
Alignment explanation
Indices: 50691--50717 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
50681 TATACTTCGA
50691 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
50718 CAATTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:52444 original size:30 final size:30
Alignment explanation
Indices: 52410--52506 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
52400 TAAACTAAAA
*
52410 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
52440 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
52470 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
52499 ATGAGCTA
1 -TGAGCTA
52507 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Done.