Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2368
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37627
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Found at i:1645 original size:50 final size:50
Alignment explanation
Indices: 1521--1769 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
1511 GATAATAACA
* * ** * *
1521 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
1572 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
1622 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
1672 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
1727 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
1770 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:1699 original size:100 final size:104
Alignment explanation
Indices: 1520--1769 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
1510 TGATAATAAC
**
1520 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
1585 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
1622 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
1685 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
1727 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1770 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:1885 original size:13 final size:13
Alignment explanation
Indices: 1864--1895 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1854 GCTTGGATCA
*
1864 TCATCAAATAAAT
1 TCATAAAATAAAT
1877 TCATAAAATAAAT
1 TCATAAAATAAAT
1890 TCATAA
1 TCATAA
1896 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:2142 original size:30 final size:30
Alignment explanation
Indices: 2107--2164 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2097 CCTCGACTCT
*
2107 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
2137 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
2165 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:9236 original size:50 final size:50
Alignment explanation
Indices: 9112--9360 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
9102 GATAATAACA
* * ** * *
9112 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
9163 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
9213 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
9263 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
9318 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
9361 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:9290 original size:100 final size:104
Alignment explanation
Indices: 9111--9360 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
9101 TGATAATAAC
**
9111 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
9176 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
9213 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
9276 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
9318 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
9361 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:9476 original size:13 final size:13
Alignment explanation
Indices: 9455--9486 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9445 GCTTGGATCA
*
9455 TCATCAAATAAAT
1 TCATAAAATAAAT
9468 TCATAAAATAAAT
1 TCATAAAATAAAT
9481 TCATAA
1 TCATAA
9487 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:9732 original size:29 final size:29
Alignment explanation
Indices: 9698--9753 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
9688 CCTCGACTCT
*
9698 AACTTTTTCAAAATTACAATTTTGCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCTA
* *
9727 AACTTTTACATAATTACATTTTTGCCC
1 AACTTTTACAAAATTACAATTTTGCCC
9754 CAAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (29 bp):
AACTTTTACAAAATTACAATTTTGCCCTA
Found at i:19869 original size:21 final size:21
Alignment explanation
Indices: 19845--19885 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
19835 TTATGGAAAA
19845 TCAAAGATATGGGTATCAAAG
1 TCAAAGATATGGGTATCAAAG
19866 TCAAAGATATGGGTATCAAA
1 TCAAAGATATGGGTATCAAA
19886 TATTGGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (21 bp):
TCAAAGATATGGGTATCAAAG
Found at i:19898 original size:30 final size:31
Alignment explanation
Indices: 19862--19922 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
19852 TATGGGTATC
19862 AAAGTCAAAGATATGGGTATC-AAATATTGG
1 AAAGTCAAAGATATGGGTATCGAAATATTGG
* *
19892 AAAGTCAAATATATGGGTATCGAGATATTGG
1 AAAGTCAAAGATATGGGTATCGAAATATTGG
19923 CATAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGTCAAAGATATGGGTATCGAAATATTGG
Found at i:26840 original size:18 final size:19
Alignment explanation
Indices: 26817--26855 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
26807 TAAAGAAGAA
26817 AAAAATATG-CATATATAT
1 AAAAATATGACATATATAT
26835 AAAAATATGTACATATATAT
1 AAAAATATG-ACATATATAT
26855 A
1 A
26856 TAGGTGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAATATGACATATATAT
Found at i:27302 original size:3 final size:3
Alignment explanation
Indices: 27291--27348 Score: 73
Period size: 3 Copynumber: 19.3 Consensus size: 3
27281 CAATAATACC
* * *
27291 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
27336 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
27349 GCAAAAGTAC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 46 0.98
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:29020 original size:50 final size:50
Alignment explanation
Indices: 28966--29541 Score: 188
Period size: 50 Copynumber: 11.5 Consensus size: 50
28956 TCAGGGAAGC
* * *
28966 AAGATTCGTCGTTGTGACTTCAATCTGTTCTGCTGCATCACCTGGGAAAT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTACTGCATCGCCTGGGAAAT
* * * **
29016 AAGATTCGCCGTTGTGGCTTCAATCT-TT-TACATTGCAAT-GTCGGGGAAGC
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTAC--TGC-ATCGCCTGGGAAAT
* * ** * *
29066 AAGATTCGTCGTTGTGAATTTGATCTGTTCCACTGCAACGCCTGGGAAAT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTACTGCATCGCCTGGGAAAT
* * * *
29116 AAGATTCGCCATTGTGGCTTCAATCT-TT-TACATTGCAAT-GCC-GAAGAAGT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTAC--TGC-ATCGCCTG-GGAAAT
* * ** * * * * **
29166 GAGATTCGTCGTTGTGACTTTGACCTATTCCACTGCAACG-CTAAGAAAGT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTACTGCATCGCCTGGGAAA-T
* * * * *
29216 AAGATCCGCTGTTGTGGCTTCAATCT-TT-TACATTGCAAT-GCCGGGGAAGT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTAC--TGC-ATCGCCTGGGAAAT
* * ** * * * **
29266 GAGATTCGTCGTTGTGACTTTGACCTGTTCCACTGCAACG-CTAAGAAAGT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTACTGCATCGCCTGGGAAA-T
* * * * * * *
29316 AAGATCCGCTGTTGT-AGCTTCAATCT-TTTTAATTGCAAT-GTCAGGGAAGT
1 AAGATTCGCCGTTGTGA-CTTCAATCTGTTCT-ACTGC-ATCGCCTGGGAAAT
* * * * **
29366 AAGATTCGTCGTTGTGACTTCAATCTATTCCACTGCAACG-CTAAGAAAGT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCTACTGCATCGCCTGGGAAA-T
* * * * * * *
29416 AAGATCCGCTGTTGT-AGCTTCAATCT-TTTTAATTGCAAT-GTCAGGGAAGT
1 AAGATTCGCCGTTGTGA-CTTCAATCTGTTCT-ACTGC-ATCGCCTGGGAAAT
* * **
29466 AAGATTCGTCGTTGTGACTTCAATCTGTT-TCACTGCAACG-CTAAGAAAGT
1 AAGATTCGCCGTTGTGACTTCAATCTGTTCT-ACTGCATCGCCTGGGAAA-T
* *
29516 AAGATCCGCTGTTGT-AGCTTCAATCT
1 AAGATTCGCCGTTGTGA-CTTCAATCT
29542 TTTTAATTGC
Statistics
Matches: 368, Mismatches: 118, Indels: 80
0.65 0.21 0.14
Matches are distributed among these distances:
48 6 0.02
49 36 0.10
50 290 0.79
51 30 0.08
52 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (50 bp):
AAGATTCGCCGTTGTGACTTCAATCTGTTCTACTGCATCGCCTGGGAAAT
Found at i:29124 original size:100 final size:100
Alignment explanation
Indices: 28951--29671 Score: 895
Period size: 100 Copynumber: 7.2 Consensus size: 100
28941 CCATCTTTAA
* ** **
28951 CAATGTCAGGGAAGCAAGATTCGTCGTTGTGACTTCAATCTGTTCTGCTGCATCAC-CTGGGAAA
1 CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTCCACTGCA--ACGCTAAGAAA
* * *
29015 -TAAGATTCGCCGTTGTGGCTTCAATC-TTTTACATTG
64 GTAAGATCCGCTGTTGTAGCTTCAATCTTTTTA-ATTG
* * * ** **
29051 CAATGTCGGGGAAGCAAGATTCGTCGTTGTGAATTTGATCTGTTCCACTGCAACGCCTGGGAAA-
1 CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTCCACTGCAACG-CTAAGAAAG
* ** *
29115 TAAGATTCGCCATTGTGGCTTCAATC-TTTTACATTG
65 TAAGATCCGCTGTTGTAGCTTCAATCTTTTTA-ATTG
* * * ** * *
29151 CAATG-CCGAAGAAGTGAGATTCGTCGTTGTGACTTTGACCTATTCCACTGCAACGCTAAGAAAG
1 CAATGTCAG-GGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTCCACTGCAACGCTAAGAAAG
*
29215 TAAGATCCGCTGTTGTGGCTTCAATC-TTTTACATTG
65 TAAGATCCGCTGTTGTAGCTTCAATCTTTTTA-ATTG
* * * ** *
29251 CAATGCCGGGGAAGTGAGATTCGTCGTTGTGACTTTGACCTGTTCCACTGCAACGCTAAGAAAGT
1 CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
29316 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTG
66 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTG
*
29351 CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTATTCCACTGCAACGCTAAGAAAGT
1 CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
29416 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTG
66 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTG
*
29451 CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTTCACTGCAACGCTAAGAAAGT
1 CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
29516 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTG
66 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTG
* * * ** *
29551 CAATGTCAGGGAAGTAAGATCCG-CTGTTGT-AGCTTCAATCTATTCCTCTGCATTGCCT-GGAA
1 CAATGTCAGGGAAGTAAGATTCGTC-GTTGTGA-CTTCAATCTGTTCCACTGCAACG-CTAAGAA
29613 AGTAAGATCCGCTTGTTGTAGCTTCAATCTTTTTAATTG
63 AGTAAGATCCGC-TGTTGTAGCTTCAATCTTTTTAATTG
*
29652 CAATGTTAGGGAAGTAAGAT
1 CAATGTCAGGGAAGTAAGAT
29672 CCGCTGTCAG
Statistics
Matches: 571, Mismatches: 40, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
98 2 0.00
99 10 0.02
100 505 0.88
101 54 0.09
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (100 bp):
CAATGTCAGGGAAGTAAGATTCGTCGTTGTGACTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTG
Found at i:29553 original size:50 final size:50
Alignment explanation
Indices: 29199--29678 Score: 408
Period size: 50 Copynumber: 9.6 Consensus size: 50
29189 CCTATTCCAC
* * *
29199 TGCAACGCTAAGAAAGTAAGATCCGCTGTTGTGGCTTCAATC-TTTTACAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTA-AT
** * * * ** * * ** *
29249 TGCAATGCCGGGGAAGTGAGATTCG-TCGTTGT-GACTTTGACCTGTTCCAC
1 TGCAATGCTAGGAAAGTAAGATCCGCT-GTTGTAG-CTTCAATCTTTTTAAT
* *
29299 TGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
* * * ** *
29349 TGCAATG-TCAGGGAAGTAAGATTCG-TCGTTGT-GACTTCAATCTATTCCAC
1 TGCAATGCT-AGGAAAGTAAGATCCGCT-GTTGTAG-CTTCAATCTTTTTAAT
* *
29399 TGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
* * * * *
29449 TGCAATG-TCAGGGAAGTAAGATTCG-TCGTTGT-GACTTCAATCTGTTTCAC
1 TGCAATGCT-AGGAAAGTAAGATCCGCT-GTTGTAG-CTTCAATCTTTTTAAT
* *
29499 TGCAACGCTAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
* * **
29549 TGCAATG-TCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATC-TATTCCT
1 TGCAATGCT-AGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
*
29598 CTGCATTGCCT-GGAAAGTAAGATCCGCTTGTTGTAGCTTCAATCTTTTTAAT
1 -TGCAATG-CTAGGAAAGTAAGATCCGC-TGTTGTAGCTTCAATCTTTTTAAT
* *
29650 TGCAATGTTAGGGAAGTAAGATCCGCTGT
1 TGCAATGCTAGGAAAGTAAGATCCGCTGT
29679 CAGTACAGGA
Statistics
Matches: 334, Mismatches: 72, Indels: 48
0.74 0.16 0.11
Matches are distributed among these distances:
49 13 0.04
50 269 0.81
51 47 0.14
52 5 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (50 bp):
TGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAT
Done.