genome.fa.s1589.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold555
Parameters: 2 7 7 80 10 50 1000
Length:  47655

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7339--7630	42	6.9	42	80	9	319	17	28	34	19	1.95
7839--7917	24	3.3	24	85	5	106	6	37	35	20	1.78
7922--8933	43	23.9	43	78	6	1003	16	32	33	17	1.93
7922--8933	85	12.0	84	82	4	739	16	32	33	17	1.93
7935--8962	256	4.1	254	84	5	1058	16	32	33	17	1.93
7993--8728	299	2.5	299	92	1	1210	16	32	33	17	1.93
8862--8940	34	2.3	34	93	2	131	7	35	37	18	1.80
8939--8987	25	2.0	25	91	0	80	12	22	46	18	1.82
8975--9067	42	2.2	44	90	3	145	12	27	39	19	1.88
16969--17260	42	6.9	42	80	9	319	17	28	34	19	1.95
17469--17547	24	3.3	24	85	5	106	6	37	35	20	1.78
17552--18563	43	23.9	43	78	6	1003	16	32	33	17	1.93
17552--18563	85	12.0	84	82	4	739	16	32	33	17	1.93
17565--18592	256	4.1	254	84	5	1058	16	32	33	17	1.93
17623--18358	299	2.5	299	92	1	1210	16	32	33	17	1.93
18492--18570	34	2.3	34	93	2	131	7	35	37	18	1.80
18569--18617	25	2.0	25	91	0	80	12	22	46	18	1.82
18605--18697	42	2.2	44	90	3	145	12	27	39	19	1.88
26599--26890	42	6.9	42	80	9	319	17	28	34	19	1.95
27098--27176	24	3.3	24	85	5	106	6	37	35	20	1.78
27181--28192	43	23.9	43	78	6	985	16	32	33	17	1.93
27181--28192	85	12.0	84	82	4	721	16	32	33	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27194--28221	256	4.1	253	83	5	1038	16	32	33	17	1.93
27252--27987	299	2.5	299	92	1	1201	16	32	32	18	1.93
28121--28199	34	2.3	34	93	2	131	7	35	37	18	1.80
28198--28246	25	2.0	25	91	0	80	12	22	46	18	1.82
28234--28326	42	2.2	44	90	3	145	12	27	39	19	1.88
36227--36518	42	6.9	42	80	9	319	17	28	34	19	1.95
36727--36805	24	3.3	24	85	5	106	6	37	35	20	1.78
36823--37851	43	24.3	43	77	6	747	16	32	33	18	1.93
36810--37822	85	12.0	86	81	4	944	16	32	33	18	1.93
36810--37825	256	4.0	255	82	6	1000	16	32	33	18	1.93
36881--37617	299	2.5	299	91	2	1160	16	32	32	18	1.93
37751--37829	34	2.3	34	93	2	131	7	35	37	18	1.80
37828--37876	25	2.0	25	91	0	80	12	22	46	18	1.82
37864--37956	42	2.2	44	90	3	145	12	27	39	19	1.88

Tables:   1

The End!