Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold981
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29913
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Found at i:1073 original size:79 final size:79
Alignment explanation
Indices: 932--1206 Score: 292
Period size: 79 Copynumber: 3.5 Consensus size: 79
922 TGCGATTCAT
** * * * *
932 GGGTAAAATGACCGAAATACCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGAT
1 GGGTAAAATGACTAAAATACCCTAAAGGGTAAAATGACCGAAATTCCCTAGAAGGATAAAATGAT
*
997 AGAAATACCCTAGA
66 CGAAATACCCTAGA
* * * * *
1011 GGGTAAAATGACTAAAATACCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGAC
1 GGGTAAAATGACTAAAATACCCTAAAGGGTAAAATGACCGAAATTCCCTAGAAGGATAAAATGAT
*
1076 CGAAATACCCTCGAA
66 CGAAATACCCTAG-A
** *
1091 GGGTAAAAT-ACTAAAATACCCTCAAA-GG-AAAATGATTGAAATTACCTCA-AAGGATAAAATG
1 GGGTAAAATGACTAAAATACCCT-AAAGGGTAAAATGACCGAAATTCCCT-AGAAGGATAAAATG
1152 ATCGAAATTA-CCTCAGA
64 ATCGAAA-TACCCT-AGA
* *
1169 GGGT-AAATGACTGAAATACCCCAGAAGGGTAAAATGAC
1 GGGTAAAATGACTAAAATACCCTA-AAGGGTAAAATGAC
1207 TAAAATACCC
Statistics
Matches: 163, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
77 5 0.03
78 52 0.32
79 86 0.53
80 20 0.12
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (79 bp):
GGGTAAAATGACTAAAATACCCTAAAGGGTAAAATGACCGAAATTCCCTAGAAGGATAAAATGAT
CGAAATACCCTAGA
Found at i:1233 original size:53 final size:53
Alignment explanation
Indices: 932--1234 Score: 271
Period size: 53 Copynumber: 5.8 Consensus size: 53
922 TGCGATTCAT
** * * **
932 GGGTAAAATGACCGAAATACCCTAAAGGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTAAAATACCCCAGAGGGTAAAATGACTGAAATACCCCAGAA
* * *
985 GGGTAAAATGA-TAGAAATACCCTAGAGGGTAAAATGACTAAAATACCCTA-AA
1 GGGTAAAATGACTA-AAATACCCCAGAGGGTAAAATGACTGAAATACCCCAGAA
** * ** * * *
1037 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTAAAATACCC-CAGAGGGTAAAATGACTGAAATACCC-CAGAA
* * *
1091 GGGTAAAAT-ACTAAAATACCCTCA-AAGG-AAAATGATTGAAATTACCTCA-AA
1 GGGTAAAATGACTAAAATACCC-CAGAGGGTAAAATGACTGAAA-TACCCCAGAA
* * * *
1142 GGATAAAATGATCGAAATTACCTCAGAGGGT-AAATGACTGAAATACCCCAGAA
1 GGGTAAAATGA-CTAAAATACCCCAGAGGGTAAAATGACTGAAATACCCCAGAA
*
1195 GGGTAAAATGACTAAAATACCCCATAGGGTAAAATGACTG
1 GGGTAAAATGACTAAAATACCCCAGAGGGTAAAATGACTG
1235 TTATACGCTT
Statistics
Matches: 200, Mismatches: 37, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
51 21 0.10
52 50 0.25
53 118 0.59
54 11 0.05
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.19
Consensus pattern (53 bp):
GGGTAAAATGACTAAAATACCCCAGAGGGTAAAATGACTGAAATACCCCAGAA
Found at i:1240 original size:26 final size:27
Alignment explanation
Indices: 932--1234 Score: 256
Period size: 26 Copynumber: 11.5 Consensus size: 27
922 TGCGATTCAT
* *
932 GGGTAAAATGACCGAAATACCCTA-AA
1 GGGTAAAATGACTGAAATACCCCAGAA
**
958 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
985 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
* *
1011 GGGTAAAATGACTAAAATACCCTA-AA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * ** *
1037 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
1064 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTGAAATACCC-CAGAA
*
1091 GGGTAAAAT-ACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
1117 -GG-AAAATGATTGAAATTACCTCA-AA
1 GGGTAAAATGACTGAAA-TACCCCAGAA
* *
1142 GGATAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
1169 GGGT-AAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* *
1195 GGGTAAAATGACTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
1221 GGGTAAAATGACTG
1 GGGTAAAATGACTG
1235 TTATACGCTT
Statistics
Matches: 232, Mismatches: 29, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
24 5 0.02
25 18 0.08
26 114 0.49
27 95 0.41
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:2171 original size:27 final size:27
Alignment explanation
Indices: 2117--2397 Score: 247
Period size: 27 Copynumber: 10.5 Consensus size: 27
2107 TGCGATTCAT
*
2117 GGGTAAAATGAC-GAAATACCCCTA-AA
1 GGGTAAAATGACTAAAATACCCC-AGAA
*
2143 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTAAAATACCCCAGAA
*
2170 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACTA-AAATACCCCAGAA
2196 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTAAAATACCCC-AGAA
** * ** *
2223 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCCCAGAA
* * **
2250 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTAAAATACCC-CAGAA
*
2277 GGGTAAAATTACTAAAATACCCTCA-AA
1 GGGTAAAATGACTAAAATACCC-CAGAA
* * * *
2304 GGATAAAATGATCGAAATTACCTCAG-A
1 GGGTAAAATGA-CTAAAATACCCCAGAA
*
2331 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTAAAATACCCCAGAA
* *
2358 GGGTAAAATGTCTAAAATACCCCCA-TA
1 GGGTAAAATGACTAAAATA-CCCCAGAA
2385 GGGTAAAATGACT
1 GGGTAAAATGACT
2398 GTTATACCCT
Statistics
Matches: 208, Mismatches: 34, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
26 44 0.21
27 151 0.73
28 13 0.06
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTAAAATACCCCAGAA
Found at i:2320 original size:81 final size:80
Alignment explanation
Indices: 2117--2396 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
2107 TGCGATTCAT
* * * *
2117 GGGTAAAATGAC-GAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
2180 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
2196 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
2261 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
2277 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
2342 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
2358 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
2397 TGTTATACCC
Statistics
Matches: 171, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
79 12 0.07
80 48 0.28
81 106 0.62
82 5 0.03
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:3320 original size:27 final size:27
Alignment explanation
Indices: 3282--3562 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
3272 TGCGATTCAT
3282 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
3309 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
3336 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
3362 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
3389 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
3416 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
3443 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
3470 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
3497 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
3524 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
3551 GGGTAAAATGAC
1 GGGTAAAATGAC
3563 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:3486 original size:81 final size:80
Alignment explanation
Indices: 3282--3562 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
3272 TGCGATTCAT
* ** * *
3282 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
3346 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
3362 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
3427 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
3443 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
3508 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
3524 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
3563 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:4488 original size:27 final size:27
Alignment explanation
Indices: 4450--4730 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
4440 TGCGATTCAT
4450 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
4477 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
4504 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
4530 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
4557 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
4584 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
4611 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
4638 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
4665 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
4692 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
4719 GGGTAAAATGAC
1 GGGTAAAATGAC
4731 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:4654 original size:81 final size:80
Alignment explanation
Indices: 4450--4730 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
4440 TGCGATTCAT
* ** * *
4450 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
4514 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
4530 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
4595 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
4611 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
4676 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
4692 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
4731 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:5655 original size:27 final size:27
Alignment explanation
Indices: 5617--5897 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
5607 TGCGATTCAT
5617 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
5644 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
5671 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
5697 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
5724 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
5751 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
5778 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
5805 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
5832 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
5859 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
5886 GGGTAAAATGAC
1 GGGTAAAATGAC
5898 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:5821 original size:81 final size:80
Alignment explanation
Indices: 5617--5897 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
5607 TGCGATTCAT
* ** * *
5617 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
5681 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
5697 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
5762 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
5778 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
5843 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
5859 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
5898 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:6823 original size:27 final size:27
Alignment explanation
Indices: 6785--7065 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
6775 TGCGATTCAT
6785 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
6812 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
6839 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
6865 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
6892 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
6919 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
6946 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
6973 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
7000 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
7027 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
7054 GGGTAAAATGAC
1 GGGTAAAATGAC
7066 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:6989 original size:81 final size:80
Alignment explanation
Indices: 6785--7065 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
6775 TGCGATTCAT
* ** * *
6785 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
6849 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
6865 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
6930 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
6946 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
7011 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
7027 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
7066 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:7990 original size:27 final size:27
Alignment explanation
Indices: 7952--8232 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
7942 TGCGATTCAT
7952 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
7979 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
8006 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
8032 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
8059 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
8086 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
8113 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
8140 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
8167 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
8194 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
8221 GGGTAAAATGAC
1 GGGTAAAATGAC
8233 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:8156 original size:81 final size:80
Alignment explanation
Indices: 7952--8232 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
7942 TGCGATTCAT
* ** * *
7952 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
8016 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
8032 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
8097 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
8113 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
8178 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
8194 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
8233 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:9157 original size:27 final size:27
Alignment explanation
Indices: 9119--9399 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
9109 TGCGATTCAT
9119 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
9146 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
9173 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
9199 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
9226 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
9253 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
9280 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
9307 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
9334 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
9361 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
9388 GGGTAAAATGAC
1 GGGTAAAATGAC
9400 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:9323 original size:81 final size:80
Alignment explanation
Indices: 9119--9399 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
9109 TGCGATTCAT
* ** * *
9119 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
9183 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
9199 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
9264 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
9280 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
9345 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
9361 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
9400 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:10324 original size:27 final size:27
Alignment explanation
Indices: 10286--10566 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
10276 TGCGATTCAT
10286 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
10313 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
10340 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
10366 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
10393 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
10420 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
10447 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
10474 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
10501 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
10528 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
10555 GGGTAAAATGAC
1 GGGTAAAATGAC
10567 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:10490 original size:81 final size:80
Alignment explanation
Indices: 10286--10566 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
10276 TGCGATTCAT
* ** * *
10286 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
10350 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
10366 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
10431 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
10447 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
10512 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
10528 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
10567 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:11491 original size:27 final size:27
Alignment explanation
Indices: 11453--11733 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
11443 TGCGATTCAT
11453 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
11480 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
11507 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
11533 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
11560 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
11587 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
11614 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
11641 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
11668 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
11695 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
11722 GGGTAAAATGAC
1 GGGTAAAATGAC
11734 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:11657 original size:81 final size:80
Alignment explanation
Indices: 11453--11733 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
11443 TGCGATTCAT
* ** * *
11453 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
11517 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
11533 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
11598 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
11614 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
11679 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
11695 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
11734 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:12658 original size:27 final size:27
Alignment explanation
Indices: 12620--12900 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
12610 TGCGATTCAT
12620 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
12647 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
12674 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
12700 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
12727 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
12754 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
12781 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
12808 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
12835 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
12862 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
12889 GGGTAAAATGAC
1 GGGTAAAATGAC
12901 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:12824 original size:81 final size:80
Alignment explanation
Indices: 12620--12900 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
12610 TGCGATTCAT
* ** * *
12620 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
12684 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
12700 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
12765 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
12781 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
12846 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
12862 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
12901 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:13825 original size:27 final size:27
Alignment explanation
Indices: 13787--14067 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
13777 TGCGATTCAT
13787 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
13814 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
13841 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
13867 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
13894 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
13921 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
13948 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
13975 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
14002 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
14029 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
14056 GGGTAAAATGAC
1 GGGTAAAATGAC
14068 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:13991 original size:81 final size:80
Alignment explanation
Indices: 13787--14067 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
13777 TGCGATTCAT
* ** * *
13787 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
13851 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
13867 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
13932 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
13948 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
14013 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
14029 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
14068 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:14991 original size:27 final size:27
Alignment explanation
Indices: 14953--15233 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
14943 TGCGATTCAT
14953 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
14980 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
15007 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
15033 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
15060 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
15087 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
15114 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
15141 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
15168 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
15195 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
15222 GGGTAAAATGAC
1 GGGTAAAATGAC
15234 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:15157 original size:81 final size:80
Alignment explanation
Indices: 14953--15233 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
14943 TGCGATTCAT
* ** * *
14953 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
15017 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
15033 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
15098 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
15114 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
15179 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
15195 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
15234 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:16348 original size:85 final size:80
Alignment explanation
Indices: 16121--16403 Score: 269
Period size: 85 Copynumber: 3.5 Consensus size: 80
16111 TGCGATTCAT
** * *
16121 GGGTAAAATGACCGAAATA--CCCCTAAAGGGTAAAATGACCAAAATACC-CAGAAGGGTAAAAT
1 GGGTAAAATGACTAAAATACCCCCCTAAAGGGTAAAATGACGAAATTACCTCAG-A-GGTAAAAT
* *
16183 GATAGAAATACCCTAGA
64 GACAGAAATACCCTCGA
* ** *
16200 GGGTAAAATGACTAAAATA--CCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAAT
1 GGGTAAAATGACTAAAATACCCCCCTAAAGGGTAAAATGA-CGAAATTACCTCAGAGG-TAAAAT
*
16263 GACCGAAATACCCTCGA
64 GACAGAAATACCCTCGA
* *
16280 GGGGTAAAATTACTAAAATACCCTCCCTCAAAGGATAAAATGATCGAAATTACCTCAGATGGTAA
1 -GGGTAAAATGACTAAAATACCC-CCCT-AAAGGGTAAAATGA-CGAAATTACCTCAGA-GGTAA
*
16345 AATGACTGAAATACCC-CAGAA
61 AATGACAGAAATACCCTC-G-A
*
16366 GGGTAAAATGACTAAAATA--CCCC-ATAGGGTAAAATGAC
1 GGGTAAAATGACTAAAATACCCCCCTAAAGGGTAAAATGAC
16404 TGTTATACGC
Statistics
Matches: 171, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
79 39 0.23
80 39 0.23
81 19 0.11
82 3 0.02
83 2 0.01
84 5 0.03
85 61 0.36
86 3 0.02
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATGACTAAAATACCCCCCTAAAGGGTAAAATGACGAAATTACCTCAGAGGTAAAATGA
CAGAAATACCCTCGA
Found at i:16405 original size:53 final size:53
Alignment explanation
Indices: 16121--16405 Score: 229
Period size: 53 Copynumber: 5.3 Consensus size: 53
16111 TGCGATTCAT
*
16121 GGGTAAAATGACCGAAATACCCCTA-AAGGGTAAAATGACCAAAATA-CCCAGAA
1 GGGTAAAATGACTGAAATACCCC-AGAAGGGTAAAATGACCAAAATACCCCA-AA
* *
16174 GGGTAAAATGA-TAGAAATACCCTAG-AGGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACT-GAAATACCCCAGAAGGGTAAAATGACCAAAATACCCC-AAA
* * ** * * * * * *
16227 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTCGAG
1 GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGACCAAAATACCC-CAAA
* * * * * * *
16281 GGGTAAAATTACTAAAATACCCTCCCTCA-AAGGATAAAATGATCGAAATTACCTCAGA
1 GGGTAAAATGACTGAAATA----CCC-CAGAAGGGTAAAATGA-CCAAAATACCCCAAA
* * *
16339 TGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGACTAAAATACCCCATA
1 GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGACCAAAATACCCCAAA
16392 GGGTAAAATGACTG
1 GGGTAAAATGACTG
16406 TTATACGCTT
Statistics
Matches: 181, Mismatches: 37, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
52 20 0.11
53 72 0.40
54 51 0.28
55 1 0.01
58 30 0.17
59 7 0.04
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (53 bp):
GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGACCAAAATACCCCAAA
Found at i:16411 original size:26 final size:27
Alignment explanation
Indices: 16121--16405 Score: 212
Period size: 27 Copynumber: 10.5 Consensus size: 27
16111 TGCGATTCAT
*
16121 GGGTAAAATGACCGAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
**
16148 GGGTAAAATGACCAAAATA-CCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
16174 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
*
16200 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
* * ** *
16227 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * * *
16254 GGTTTAAATGACCGAAATACCCTC-GAG
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
16281 GGGTAAAATTACTAAAATACCCTCCCTCA-AA
1 GGGTAAAATGACTGAAATA----CCC-CAGAA
* *
16312 GGATAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
*
16339 TGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* *
16366 GGGTAAAATGACTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
16392 GGGTAAAATGACTG
1 GGGTAAAATGACTG
16406 TTATACGCTT
Statistics
Matches: 205, Mismatches: 35, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
25 1 0.00
26 62 0.30
27 118 0.58
28 3 0.01
30 1 0.00
31 18 0.09
32 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:17328 original size:27 final size:27
Alignment explanation
Indices: 17290--17570 Score: 248
Period size: 27 Copynumber: 10.4 Consensus size: 27
17280 TGCGATTCAT
17290 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
17317 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
17344 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
17370 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * * **
17397 GGGTAAAATGATCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* *
17424 GGTTTAAATGACCGAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* ** *
17451 GGGTAAAATTACTAAAATACCCCCAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * * *
17478 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
17505 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
17532 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
17559 GGGTAAAATGAC
1 GGGTAAAATGAC
17571 TGTTATACCC
Statistics
Matches: 201, Mismatches: 45, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
26 30 0.15
27 162 0.81
28 9 0.04
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:17487 original size:81 final size:81
Alignment explanation
Indices: 17290--17569 Score: 325
Period size: 81 Copynumber: 3.5 Consensus size: 81
17280 TGCGATTCAT
* ** * * * *
17290 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGA-CCAAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCCCAAAGGGTAAAATGATCGAAATTACCTCAG-AGGGTAAAATG
** *
17354 ATAGAAATACCCT-AGA
65 ACCGAAATACCCTCAAA
* * * ** * *
17370 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGATCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCCCAAAGGGTAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
17435 CCGAAATACCCTCAAA
66 CCGAAATACCCTCAAA
*
17451 GGGTAAAATTACTAAAATACCCCCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCCCCAAAGGGTAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
*
17516 CTGAAATACCC-CAGAA
66 CCGAAATACCCTCA-AA
*
17532 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGA
1 GGGTAAAAT-TACTAAAATACCCCCAAAGGGTAAAATGA
17570 CTGTTATACC
Statistics
Matches: 172, Mismatches: 24, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
80 58 0.34
81 113 0.66
82 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (81 bp):
GGGTAAAATTACTAAAATACCCCCAAAGGGTAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
CCGAAATACCCTCAAA
Found at i:18495 original size:27 final size:27
Alignment explanation
Indices: 18457--18737 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
18447 TGCGATTCAT
18457 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
18484 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
18511 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
18537 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
18564 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
18591 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
18618 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
18645 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
18672 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
18699 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
18726 GGGTAAAATGAC
1 GGGTAAAATGAC
18738 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:18661 original size:81 final size:80
Alignment explanation
Indices: 18457--18737 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
18447 TGCGATTCAT
* ** * *
18457 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
18521 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
18537 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
18602 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
18618 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
18683 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
18699 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
18738 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:19662 original size:27 final size:27
Alignment explanation
Indices: 19624--19904 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
19614 TGCGATTCAT
19624 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
19651 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
19678 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
19704 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
19731 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
19758 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
19785 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
19812 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
19839 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
19866 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
19893 GGGTAAAATGAC
1 GGGTAAAATGAC
19905 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:19828 original size:81 final size:80
Alignment explanation
Indices: 19624--19904 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
19614 TGCGATTCAT
* ** * *
19624 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
19688 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
19704 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
19769 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
19785 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
19850 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
19866 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
19905 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:20828 original size:27 final size:27
Alignment explanation
Indices: 20790--21070 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
20780 TGCGATTCAT
20790 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
20817 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
20844 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
20870 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
20897 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
20924 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
20951 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
20978 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
21005 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
21032 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
21059 GGGTAAAATGAC
1 GGGTAAAATGAC
21071 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:20994 original size:81 final size:80
Alignment explanation
Indices: 20790--21070 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
20780 TGCGATTCAT
* ** * *
20790 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
20854 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
20870 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
20935 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
20951 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21016 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
21032 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
21071 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:21994 original size:27 final size:27
Alignment explanation
Indices: 21956--22236 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
21946 TGCGATTCAT
21956 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
21983 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
22010 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
22036 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
22063 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
22090 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
22117 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
22144 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
22171 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
22198 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
22225 GGGTAAAATGAC
1 GGGTAAAATGAC
22237 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:22160 original size:81 final size:80
Alignment explanation
Indices: 21956--22236 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
21946 TGCGATTCAT
* ** * *
21956 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
22020 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
22036 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
22101 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
22117 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
22182 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
22198 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
22237 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:23267 original size:80 final size:80
Alignment explanation
Indices: 23124--23402 Score: 325
Period size: 80 Copynumber: 3.5 Consensus size: 80
23114 TGCGATTCAT
** * * * *
23124 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGA
1 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTAGGAGGGTAAAATGA
23189 TAGAAATACCCTAG-A
66 T-GAAATACCCTAGAA
* * *
23204 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTAGGAGGGTAAAATGA
* *
23269 CCGAAATACCCTCGAA
66 -TGAAATACCCTAGAA
* * *
23285 GGGTAAAATTACTAAAATA-CCCTCAAA-GGTAAAATGATCGAAATTACCTCA-GAGGGTAAAAT
1 GGGTAAAATGACTAAAATACCCCT-AAAGGGTAAAATGACCGAAATTCCCT-AGGAGGGTAAAAT
*
23347 GACTGAAATACCCCAGAA
64 GA-TGAAATACCCTAGAA
* *
23365 GGGTAAAATGTCTAAAATACCCC-ATAGGGTAAAATGAC
1 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGAC
23403 TGTTATACCC
Statistics
Matches: 169, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
79 2 0.01
80 142 0.84
81 25 0.15
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTAGGAGGGTAAAATGA
TGAAATACCCTAGAA
Found at i:23316 original size:107 final size:107
Alignment explanation
Indices: 23124--23401 Score: 316
Period size: 107 Copynumber: 2.6 Consensus size: 107
23114 TGCGATTCAT
23124 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGA
* *
23189 TAGAAATACCCTAGAGGGTAAAATGA-CTAAAATACCCCTAAA
66 TAGAAATACCCTAGAAGGTAAAATGATCGAAAATACCCC-AAA
* * ** * * * *
23231 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTC-GAAGGGTAAAATT
1 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCC-CAGAAGGGTAAAATG
* * *
23295 ACTA-AAATACCCTCA-AAGGTAAAATGATCGAAATTACCTCAGA
65 A-TAGAAATACCCT-AGAAGGTAAAATGATCGAAAATACCCCAAA
* * * *
23338 GGGTAAAATGACTGAAATACCCC-AGAAGGGTAAAATGTCTAAAATACCCCA-TAGGGTAAAATG
1 GGGTAAAATGACCGAAATACCCCTA-AAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATG
23401 A
65 A
23402 CTGTTATACC
Statistics
Matches: 140, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
106 12 0.09
107 115 0.82
108 13 0.09
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (107 bp):
GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGA
TAGAAATACCCTAGAAGGTAAAATGATCGAAAATACCCCAAA
Found at i:23412 original size:26 final size:27
Alignment explanation
Indices: 23124--23404 Score: 258
Period size: 27 Copynumber: 10.5 Consensus size: 27
23114 TGCGATTCAT
*
23124 GGGTAAAATGACCGAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
**
23151 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
23178 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
*
23204 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
* * ** *
23231 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
23258 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
23285 GGGTAAAATTACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
*
23312 -GGTAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
23338 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
23365 GGGTAAAATGTCTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
23391 GGGTAAAATGACTG
1 GGGTAAAATGACTG
23405 TTATACCCTT
Statistics
Matches: 209, Mismatches: 31, Indels: 29
0.78 0.12 0.11
Matches are distributed among these distances:
25 1 0.00
26 56 0.27
27 151 0.72
28 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:23412 original size:53 final size:53
Alignment explanation
Indices: 23124--23404 Score: 275
Period size: 53 Copynumber: 5.3 Consensus size: 53
23114 TGCGATTCAT
*
23124 GGGTAAAATGACCGAAATACCCCTA-AAGGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCC-AGAAGGGTAAAATGACCAAAATACCCCA-AA
* *
23178 GGGTAAAATGA-TAGAAATACCCTAG-AGGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACT-GAAATACCCCAGAAGGGTAAAATGACCAAAATACCCC-AAA
* * ** * * * * *
23231 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGACCAAAATACCC-CAAA
* * * * * *
23285 GGGTAAAATTACTAAAATACCCTCA-AA-GGTAAAATGATCGAAATTACCTCAGA
1 GGGTAAAATGACTGAAATACCC-CAGAAGGGTAAAATGA-CCAAAATACCCCAAA
* * *
23338 GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGTCTAAAATACCCCATA
1 GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGACCAAAATACCCCAAA
23391 GGGTAAAATGACTG
1 GGGTAAAATGACTG
23405 TTATACCCTT
Statistics
Matches: 184, Mismatches: 33, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
52 2 0.01
53 104 0.57
54 77 0.42
55 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (53 bp):
GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGACCAAAATACCCCAAA
Found at i:24326 original size:27 final size:27
Alignment explanation
Indices: 24288--24568 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
24278 TGCGATTCAT
24288 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
24315 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
24342 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
24368 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
24395 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
24422 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
24449 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
24476 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
24503 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
24530 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
24557 GGGTAAAATGAC
1 GGGTAAAATGAC
24569 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:24492 original size:81 final size:80
Alignment explanation
Indices: 24288--24568 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
24278 TGCGATTCAT
* ** * *
24288 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
24352 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
24368 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
24433 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
24449 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
24514 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
24530 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
24569 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:25493 original size:27 final size:27
Alignment explanation
Indices: 25455--25756 Score: 232
Period size: 27 Copynumber: 11.4 Consensus size: 27
25445 TGCGATTCAT
25455 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
25482 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
25509 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
25535 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
25562 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
25589 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
25616 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
*
25643 -GG-AAAATGA---AAATACCTC-AAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * * *
25664 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
25691 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
25718 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
25745 GGGTAAAATGAC
1 GGGTAAAATGAC
25757 TGTTATACCC
Statistics
Matches: 223, Mismatches: 39, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
21 3 0.01
22 6 0.03
23 9 0.04
25 6 0.03
26 35 0.16
27 163 0.73
28 1 0.00
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:25519 original size:54 final size:54
Alignment explanation
Indices: 25455--25756 Score: 266
Period size: 54 Copynumber: 5.7 Consensus size: 54
25445 TGCGATTCAT
*
25455 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACCAAAATACCCCAGAA
** *
25509 GGGTAAAATGATAGAAATA-CCCTAGAGGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACCAAAATACCCC-AGAA
* * * * * *
25562 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACCAAAATACCC-CAGAA
* ** * *
25616 GGGTAAAATTACTAAAATA-CCCTCA-AAGG-AAAATG---AAAATACCTCA-AA
1 GGGTAAAATGACCGAAATACCCCT-AGAGGGTAAAATGACCAAAATACCCCAGAA
* * * **
25664 GGATAAAATGATCGAAATTACCTC-AGAGGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACCGAAA-TACCCCTAGAGGGTAAAATGACCAAAATACCCCAGAA
* ** * *
25718 GGGTAAAATGTCTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGAC
25757 TGTTATACCC
Statistics
Matches: 193, Mismatches: 40, Indels: 30
0.73 0.15 0.11
Matches are distributed among these distances:
48 16 0.08
49 12 0.06
50 8 0.04
52 5 0.03
53 65 0.34
54 86 0.45
55 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (54 bp):
GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACCAAAATACCCCAGAA
Found at i:25598 original size:80 final size:79
Alignment explanation
Indices: 25455--25727 Score: 276
Period size: 80 Copynumber: 3.5 Consensus size: 79
25445 TGCGATTCAT
** * * *
25455 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGA
1 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACC-AAATTCCCTAGAAGGATAAAATGA
*
25520 TAGAAATACCCTAGA
65 TCGAAATACCCTAGA
* * * *
25535 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACC-AAATTCCCTAGAAGGATAAAATGA
* *
25600 CCGAAATACCCTCGAA
65 TCGAAATACCCTAG-A
* *
25616 GGGTAAAATTACTAAAATA-CCCTCAAA-GG-AAAATGA--AAA-TACCTCA-AAGGATAAAATG
1 GGGTAAAATGACTAAAATACCCCT-AAAGGGTAAAATGACCAAATTCCCT-AGAAGGATAAAATG
25674 ATCGAAATTA-CCTCAGA
64 ATCGAAA-TACCCT-AGA
*
25691 GGGTAAAATGACTGAAATACCCC-AGAAGGGTAAAATG
1 GGGTAAAATGACTAAAATACCCCTA-AAGGGTAAAATG
25728 TCTAAAATAC
Statistics
Matches: 162, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
74 1 0.01
75 42 0.26
76 11 0.07
77 6 0.04
79 7 0.04
80 73 0.45
81 22 0.14
ACGTcount: A:0.45, C:0.18, G:0.19, T:0.18
Consensus pattern (79 bp):
GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCAAATTCCCTAGAAGGATAAAATGAT
CGAAATACCCTAGA
Found at i:26702 original size:26 final size:26
Alignment explanation
Indices: 26643--26725 Score: 86
Period size: 26 Copynumber: 3.3 Consensus size: 26
26633 TGCGATTCAT
26643 GGGTAAAATG--AGAAATACCCCTA-AA
1 GGGTAAAATGACAGAAATA-CCC-AGAA
26668 GGGTAAAATGACCA-AAATACCCAGAA
1 GGGTAAAATGA-CAGAAATACCCAGAA
* *
26694 GGGTAAAATGATAGAAATACCCTG-A
1 GGGTAAAATGACAGAAATACCCAGAA
26719 GGGTAAA
1 GGGTAAA
26726 TTGAAATACC
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 20 0.39
26 25 0.49
27 5 0.10
28 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.23, T:0.16
Consensus pattern (26 bp):
GGGTAAAATGACAGAAATACCCAGAA
Found at i:26849 original size:26 final size:25
Alignment explanation
Indices: 26820--26984 Score: 138
Period size: 25 Copynumber: 6.4 Consensus size: 25
26810 TTGGAGGTTT
*
26820 AAATGACCGAAATACCTCGAAGGGTA
1 AAATGACTGAAATACCTC-AAGGGTA
* * *
26846 AAATTACTAAAATACCCTCAAAGG-A
1 AAATGACTGAAATA-CCTCAAGGGTA
* *
26871 AAATGATTGAAATTACCTCAAAGG-A
1 AAATGACTGAAA-TACCTCAAGGGTA
*
26896 AAATGA-TCGAAATTACCTCAGATGGTA
1 AAATGACT-GAAA-TACCTCA-AGGGTA
*
26923 AAATGACTGAAATACCCCAGAAGGGTA
1 AAATGACTGAAATACCTC--AAGGGTA
* *
26950 AAATGACTAAAATACCCCATAGGGTA
1 AAATGACTGAAATACCTCA-AGGGTA
26976 AAATGACTG
1 AAATGACTG
26985 TTATACGCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
24 1 0.01
25 39 0.33
26 39 0.33
27 37 0.31
28 2 0.02
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.20
Consensus pattern (25 bp):
AAATGACTGAAATACCTCAAGGGTA
Found at i:26883 original size:25 final size:27
Alignment explanation
Indices: 26820--26984 Score: 136
Period size: 27 Copynumber: 6.3 Consensus size: 27
26810 TTGGAGGTTT
*
26820 AAATGACCGAAATA-CCTC-GAAGGGTA
1 AAATGACTGAAATACCCTCAGAA-GGTA
* *
26846 AAATTACTAAAATACCCTCA-AAGG-A
1 AAATGACTGAAATACCCTCAGAAGGTA
*
26871 AAATGATTGAAATTA-CCTCA-AAGG-A
1 AAATGACTGAAA-TACCCTCAGAAGGTA
*
26896 AAATGA-TCGAAATTA-CCTCAGATGGTA
1 AAATGACT-GAAA-TACCCTCAGAAGGTA
26923 AAATGACTGAAATACCC-CAGAAGGGTA
1 AAATGACTGAAATACCCTCAGAA-GGTA
* * *
26950 AAATGACTAAAATACCC-CATAGGGTA
1 AAATGACTGAAATACCCTCAGAAGGTA
26976 AAATGACTG
1 AAATGACTG
26985 TTATACGCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
24 1 0.01
25 38 0.32
26 36 0.31
27 42 0.36
28 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.20
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCAGAAGGTA
Found at i:26934 original size:27 final size:26
Alignment explanation
Indices: 26820--26984 Score: 135
Period size: 26 Copynumber: 6.3 Consensus size: 26
26810 TTGGAGGTTT
*
26820 AAATGACCGAAATACCTC-GAAGGGTA
1 AAATGACTGAAATACCTCAG-AGGGTA
* * *
26846 AAATTACTAAAATACCCTCA-AAGG-A
1 AAATGACTGAAATA-CCTCAGAGGGTA
* *
26871 AAATGATTGAAATTACCTCA-AAGG-A
1 AAATGACTGAAA-TACCTCAGAGGGTA
*
26896 AAATGA-TCGAAATTACCTCAGATGGTA
1 AAATGACT-GAAA-TACCTCAGAGGGTA
*
26923 AAATGACTGAAATACCCCAGAAGGGTA
1 AAATGACTGAAATACCTCAG-AGGGTA
* * *
26950 AAATGACTAAAATACCCCATAGGGTA
1 AAATGACTGAAATACCTCAGAGGGTA
26976 AAATGACTG
1 AAATGACTG
26985 TTATACGCTT
Statistics
Matches: 118, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.01
25 38 0.32
26 40 0.34
27 38 0.32
28 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.20
Consensus pattern (26 bp):
AAATGACTGAAATACCTCAGAGGGTA
Found at i:28202 original size:26 final size:27
Alignment explanation
Indices: 27863--28194 Score: 271
Period size: 27 Copynumber: 12.5 Consensus size: 27
27853 TGCGATTCAT
*
27863 GGGTAAAATGACCGAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
**
27890 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
27917 GGGTAAAATGA-TAGAAATA-CCCTG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
* *
27942 GGGT-AAATGATTGAAATACCCTAG-A
1 GGGTAAAATGACTGAAATACCCCAGAA
*
27967 GGGT-AAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
* * ** *
27993 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
28020 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
28047 GGGTAAAATTACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
28074 GGAG-AAAATGATTGAAATTACCTCA-AA
1 GG-GTAAAATGACTGAAA-TACCCCAGAA
* *
28101 GGATAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
28128 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* *
28155 GGGTAAAATGACTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
28181 GGGTAAAATGACTG
1 GGGTAAAATGACTG
28195 TTATACCCTT
Statistics
Matches: 253, Mismatches: 35, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
24 12 0.05
25 29 0.11
26 33 0.13
27 173 0.68
28 6 0.02
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:29114 original size:27 final size:27
Alignment explanation
Indices: 29076--29394 Score: 189
Period size: 27 Copynumber: 12.5 Consensus size: 27
29066 TGCGATTCAT
*
29076 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACTGAAATACCCCTAAA
*
29103 GGGTAAAATGAC-CAAATA-CCC-AAA
1 GGGTAAAATGACTGAAATACCCCTAAA
* **
29127 GGGT---ATGA-TAAAATA--CCTGCA
1 GGGTAAAATGACTGAAATACCCCTAAA
*
29148 GGGT-AAATGA-TGAAATA-CCCTAGA
1 GGGTAAAATGACTGAAATACCCCTAAA
*
29172 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACTGAAATACCCCTAAA
* * * **
29199 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCTAAA
* * * *
29226 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACTGAAATACCCCT-AAA
* * *
29253 GGGTAAAATTACTAAAATA-CCCTCAA
1 GGGTAAAATGACTGAAATACCCCTAAA
* * * *
29279 TGG-AAAATGATTGAATTACCTC-AAA
1 GGGTAAAATGACTGAAATACCCCTAAA
* * *
29304 GGAT-AAATGA-TCGAAATTACCTC-AGA
1 GGGTAAAATGACT-GAAA-TACCCCTAAA
29330 GGGT-AAATGA-TGAAATACCCC-AGAA
1 GGGTAAAATGACTGAAATACCCCTA-AA
*
29355 GGGTAAAATGACTAAAATACCCC-AAA
1 GGGTAAAATGACTGAAATACCCCTAAA
*
29381 TGGTAAAATGACTG
1 GGGTAAAATGACTG
29395 TTATACCCTT
Statistics
Matches: 233, Mismatches: 43, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
20 2 0.01
21 14 0.06
23 10 0.04
24 22 0.09
25 41 0.18
26 58 0.25
27 86 0.37
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCTAAA
Found at i:29163 original size:23 final size:24
Alignment explanation
Indices: 29097--29209 Score: 83
Period size: 24 Copynumber: 4.7 Consensus size: 24
29087 CCGAAATACC
* **
29097 CCTAAAGGGTAAAATGACCAAATA
1 CCTAGAGGGTAAAATGATAAAATA
* *
29121 CCCAAAGGGT---ATGATAAAATA
1 CCTAGAGGGTAAAATGATAAAATA
*
29142 CCT-GCAGGGT-AAATGATGAAATA
1 CCTAG-AGGGTAAAATGATAAAATA
29165 CCCTAGAGGGTAAAATGACTAAAATA
1 -CCTAGAGGGTAAAATGA-TAAAATA
*
29191 CCCCTAAAGGGTAAAATGA
1 --CCTAGAGGGTAAAATGA
29210 CCGAAATTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
21 16 0.22
23 10 0.14
24 17 0.23
25 7 0.10
26 6 0.08
27 17 0.23
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (24 bp):
CCTAGAGGGTAAAATGATAAAATA
Found at i:29298 original size:25 final size:24
Alignment explanation
Indices: 29273--29327 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 24
29263 ACTAAAATAC
*
29273 CCTCAATGGAAAATGATTGAATTA
1 CCTCAAAGGAAAATGATTGAATTA
*
29297 CCTCAAAGGATAAATGATCGAAATTA
1 CCTCAAAGGA-AAATGATTG-AATTA
29323 CCTCA
1 CCTCA
29328 GAGGGTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 9 0.33
25 8 0.30
26 10 0.37
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (24 bp):
CCTCAAAGGAAAATGATTGAATTA
Found at i:29386 original size:51 final size:52
Alignment explanation
Indices: 29081--29394 Score: 158
Period size: 51 Copynumber: 6.2 Consensus size: 52
29071 TTCATGGGTA
* * *
29081 AAATGACCGAAATACCCCTA-AAGGGTAAAATGAC-CAAATA-CCCAAAGGGT
1 AAATGACTGAAATACCCC-AGAAGGGTAAAATGACTAAAATACCCCAAATGGT
* * * * * * *
29131 --ATGA-TAAAATA--CCTGCAGGGT-AAATGA-TGAAATACCCTAGAGGGT
1 AAATGACTGAAATACCCCAGAAGGGTAAAATGACTAAAATACCCCAAATGGT
* ** * ***
29176 AAAATGACTAAAATACCCCTA-AAGGGTAAAATGACCGAAATTCCCTTGGA-GGTTT
1 -AAATGACTGAAATACCCC-AGAAGGGTAAAATGACTAAAATACCC-CAAATGG--T
* * *
29231 AAATGACCGAAATACCCTC-GAAGGGTAAAATTACTAAAATACCCTC-AATGGA
1 AAATGACTGAAATACCC-CAGAAGGGTAAAATGACTAAAATACCC-CAAATGGT
* * * * * * * * *
29283 AAATGATTGAATTACCTCA-AAGGAT-AAATGATCGAAATTACCTCAGAGGGT
1 AAATGACTGAAATACCCCAGAAGGGTAAAATGA-CTAAAATACCCCAAATGGT
29334 AAATGA-TGAAATACCCCAGAAGGGTAAAATGACTAAAATACCCCAAATGGT
1 AAATGACTGAAATACCCCAGAAGGGTAAAATGACTAAAATACCCCAAATGGT
29385 AAAATGACTG
1 -AAATGACTG
29395 TTATACCCTT
Statistics
Matches: 198, Mismatches: 41, Indels: 47
0.69 0.14 0.16
Matches are distributed among these distances:
44 11 0.06
45 15 0.08
47 5 0.03
48 8 0.04
49 7 0.04
50 16 0.08
51 49 0.25
52 31 0.16
53 13 0.07
54 41 0.21
55 2 0.01
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.20
Consensus pattern (52 bp):
AAATGACTGAAATACCCCAGAAGGGTAAAATGACTAAAATACCCCAAATGGT
Done.