Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 10 of 170
Found at i:2972846 original size:3 final size:3
Alignment explanation
Indices: 2972840--2972911 Score: 62
Period size: 3 Copynumber: 24.0 Consensus size: 3
2972830 GCTAGACTTT
*
2972840 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA G-AA
*
2972887 GAAA GAA -AA -AA GAA AAA GAA -AA GAA
1 G-AA GAA GAA GAA GAA GAA GAA GAA GAA
2972912 ATAATAAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
2 8 0.14
3 38 0.64
4 13 0.22
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:2972858 original size:10 final size:10
Alignment explanation
Indices: 2972843--2972871 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
2972833 AGACTTTGAA
2972843 GAAGAAGAAG
1 GAAGAAGAAG
2972853 GAAGAAGAAG
1 GAAGAAGAAG
2972863 GAAGAAGAA
1 GAAGAAGAA
2972872 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:2972858 original size:13 final size:13
Alignment explanation
Indices: 2972840--2972885 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
2972830 GCTAGACTTT
2972840 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
2972853 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
2972866 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
2972877 GAAGAAGAA
1 GAAGAAGAA
2972886 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:2973027 original size:21 final size:19
Alignment explanation
Indices: 2972984--2973036 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
2972974 CCCAGCAGCC
2972984 CAAG-AAAAAAAAAAGAAA
1 CAAGCAAAAAAAAAAGAAA
*
2973002 CAAGCCCAAAAAAAAAA-AAC
1 CAAG--CAAAAAAAAAAGAAA
2973022 CAAAGCAAAAAAAAA
1 C-AAGCAAAAAAAAA
2973037 GTAGCAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 4 0.13
19 10 0.33
20 3 0.10
21 13 0.43
ACGTcount: A:0.77, C:0.15, G:0.08, T:0.00
Consensus pattern (19 bp):
CAAGCAAAAAAAAAAGAAA
Found at i:2973072 original size:23 final size:23
Alignment explanation
Indices: 2973042--2973087 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
2973032 AAAAAGTAGC
2973042 AAAAAAGAAGAAGAAAGAAGCAG
1 AAAAAAGAAGAAGAAAGAAGCAG
2973065 AAAAAAGAAGAAGAAAGAAGCAG
1 AAAAAAGAAGAAGAAAGAAGCAG
2973088 CCCAAATGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.70, C:0.04, G:0.26, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAGAAGAAAGAAGCAG
Found at i:2973239 original size:17 final size:16
Alignment explanation
Indices: 2973205--2973267 Score: 76
Period size: 17 Copynumber: 3.9 Consensus size: 16
2973195 CCAGCCCAGC
2973205 AAAA-AAAAAAGAGAA
1 AAAAGAAAAAAGAGAA
2973220 AAAA-AGAAAAAGAGAGA
1 AAAAGA-AAAAAGAGA-A
*
2973237 AAAAGAAAAAAGAAAA
1 AAAAGAAAAAAGAGAA
2973253 AACAAGAAAAAAGAG
1 AA-AAGAAAAAAGAG
2973268 GTTCAATTCG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.12
16 12 0.29
17 24 0.57
18 1 0.02
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAGAGAA
Found at i:2973260 original size:23 final size:23
Alignment explanation
Indices: 2973219--2973263 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
2973209 AAAAAAGAGA
*
2973219 AAAAAAGAAAAAGAGAGAAAAAG
1 AAAAAAGAAAAAGAAAGAAAAAG
2973242 AAAAAAGAAAAA-ACAAGAAAAA
1 AAAAAAGAAAAAGA-AAGAAAAA
2973264 AGAGGTTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAAAAGAAAGAAAAAG
Found at i:2973263 original size:16 final size:16
Alignment explanation
Indices: 2973205--2973254 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
2973195 CCAGCCCAGC
2973205 AAAAA-AAAAAGAGAA
1 AAAAAGAAAAAGAGAA
*
2973220 AAAAAGAAAAAGAGAG
1 AAAAAGAAAAAGAGAA
2973236 AAAAAGAAAAA-AGAA
1 AAAAAGAAAAAGAGAA
2973251 AAAA
1 AAAA
2973255 CAAGAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.38
16 20 0.62
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAGAA
Found at i:2973645 original size:18 final size:17
Alignment explanation
Indices: 2973624--2974119 Score: 230
Period size: 17 Copynumber: 28.5 Consensus size: 17
2973614 AATTCCCATG
2973624 TTTCAAAAATCTTCGTGT
1 TTTCAAAAAT-TTCGTGT
*
2973642 TTTC-AAAATTCTAGTG-
1 TTTCAAAAATT-TCGTGT
*
2973658 TTTCAAAAATTTTCTTGT
1 TTTCAAAAA-TTTCGTGT
2973676 TTTCAGAAAAAAATTTCGTGT
1 TTTC----AAAAATTTCGTGT
* *
2973697 TTT-ATAAATTTCCGTAT
1 TTTCAAAAATTT-CGTGT
** *
2973714 TTTCAAAAAAATCATGT
1 TTTCAAAAATTTCGTGT
2973731 CTTTCAAAAATTTTCGTGT
1 -TTTCAAAAA-TTTCGTGT
** *
2973750 TTTCAAAAAAAATGACCT-T
1 TTTC---AAAAATTTCGTGT
2973769 GTTTCAAAAATTTCCGTGT
1 -TTTCAAAAATTT-CGTGT
*** *
2973788 TAAAAAAAATCTTCGTAT
1 TTTCAAAAAT-TTCGTGT
2973806 TTTCAAAAAAATTTCGTG-
1 TTTC--AAAAATTTCGTGT
2973824 TTTCAAAAATCTTCGTGT
1 TTTCAAAAAT-TTCGTGT
2973842 TTTCAAAAATTTCGGTGT
1 TTTCAAAAATTTC-GTGT
*
2973860 TTT-AAAGATTTTCGTGT
1 TTTCAAA-AATTTCGTGT
* *
2973877 TTTCAAAAACTCCGGTGAT
1 TTTCAAAAATTTC-GTG-T
* **
2973896 TTTAAAAAAAATCGT-T
1 TTTCAAAAATTTCGTGT
*
2973912 TTCTAAAAAATTTCCGTG-
1 TT-TCAAAAATTT-CGTGT
2973930 TTTCAAAAATTTTCGTGT
1 TTTCAAAAA-TTTCGTGT
2973948 TTT-AAAAATTTTCGTGT
1 TTTCAAAAA-TTTCGTGT
*
2973965 TTT-AAAAATTCTCGTAT
1 TTTCAAAAATT-TCGTGT
2973982 TTT---AAATTT--T-T
1 TTTCAAAAATTTCGTGT
** *
2973993 TTAAGAAAAAATT-GTG-
1 TT-TCAAAAATTTCGTGT
* *
2974009 TTTCAAAAAATGTCTTGT
1 TTTC-AAAAATTTCGTGT
2974027 TTT-AAAAATTTTCGTG-
1 TTTCAAAAA-TTTCGTGT
*
2974043 TTTCAAAAAATGTCGTGT
1 TTTC-AAAAATTTCGTGT
2974061 TTT-AAAAACTTTCGTGT
1 TTTCAAAAA-TTTCGTGT
**
2974078 TTT-TGAAATTTCCGTG-
1 TTTCAAAAATTT-CGTGT
2974094 TTT-AAAAATTCTCGTGT
1 TTTCAAAAATT-TCGTGT
*
2974111 TTTTAAAAA
1 TTTCAAAAA
2974120 AAAACTTTCA
Statistics
Matches: 371, Mismatches: 55, Indels: 104
0.70 0.10 0.20
Matches are distributed among these distances:
11 3 0.01
12 1 0.00
14 1 0.00
15 10 0.03
16 60 0.16
17 136 0.37
18 103 0.28
19 24 0.06
20 13 0.04
21 15 0.04
22 5 0.01
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (17 bp):
TTTCAAAAATTTCGTGT
Found at i:2973660 original size:34 final size:34
Alignment explanation
Indices: 2973589--2973680 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
2973579 AAAATTGTAA
* * *
2973589 TTTCAATAATCCTCGTGCTTTTAAAAATTCCCATG
1 TTTCAAAAATCTTCGTG-TTTTCAAAATTCCCATG
*
2973624 TTTCAAAAATCTTCGTGTTTTCAAAATT-CTAGTG
1 TTTCAAAAATCTTCGTGTTTTCAAAATTCCCA-TG
* *
2973658 TTTCAAAAATTTTCTTGTTTTCA
1 TTTCAAAAATCTTCGTGTTTTCA
2973681 GAAAAAAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
33 2 0.04
34 33 0.66
35 15 0.30
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (34 bp):
TTTCAAAAATCTTCGTGTTTTCAAAATTCCCATG
Found at i:2973772 original size:74 final size:73
Alignment explanation
Indices: 2973658--2973832 Score: 185
Period size: 74 Copynumber: 2.4 Consensus size: 73
2973648 AATTCTAGTG
* ** * * * *
2973658 TTTCAAAAATTTTCTTGTTTTCAGAAAAAAATTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAAATACCGTGTTTCAAAAATTTCCG--TGTTAAAAAA
2973723 AATCAT-GT-C
63 AATCATCGTAC
*
2973732 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCTTGTTTCAAAAATTTCCGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAAT-ACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
* *
2973797 TCTTCGTAT
65 TCATCGTAC
*
2973806 TTTCAAAAAAATTTCGTG-TTTCAAAAA
1 TTTC-AAAAATTTTCGTGTTTTCAAAAA
2973833 TCTTCGTGTT
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
72 13 0.15
73 10 0.12
74 51 0.59
75 12 0.14
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.41
Consensus pattern (73 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAATACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAAT
CATCGTAC
Found at i:2973774 original size:38 final size:36
Alignment explanation
Indices: 2973656--2973788 Score: 124
Period size: 38 Copynumber: 3.6 Consensus size: 36
2973646 AAAATTCTAG
* * * *
2973656 TGTTTCAAAAATTTTCTTGTTTTCAGAAAAAAATTTCG
1 TGTTTCAAAAATTTCCGTGTTTTCA-AAAAAAA-TCCT
* * * *
2973694 TGTTTTATAAATTTCCGTATTTTC-AAAAAAATCAT
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAAAAATCCT
* *
2973729 GTCTTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCT
1 -TGTTTCAAAAATTTCCGTGTTTTCAAAAAAAAT--CCT
2973768 TGTTTCAAAAATTTCCGTGTT
1 TGTTTCAAAAATTTCCGTGTT
2973789 AAAAAAAATC
Statistics
Matches: 75, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
35 1 0.01
36 26 0.35
37 8 0.11
38 38 0.51
39 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.44
Consensus pattern (36 bp):
TGTTTCAAAAATTTCCGTGTTTTCAAAAAAAATCCT
Found at i:2974133 original size:20 final size:20
Alignment explanation
Indices: 2974110--2974148 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2974100 AATTCTCGTG
2974110 TTTTTAAAAAAAAACTTTCA
1 TTTTTAAAAAAAAACTTTCA
* *
2974130 TTTTTTAAAAAAAATTTTC
1 TTTTTAAAAAAAAACTTTC
2974149 GTGCTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTTAAAAAAAAACTTTCA
Found at i:2974159 original size:17 final size:17
Alignment explanation
Indices: 2974139--2974176 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
2974129 ATTTTTTAAA
*
2974139 AAAAATTTTCGTG-CTT
1 AAAAATTCTCGTGTCTT
*
2974155 CAAAATTCTCGTGTCTT
1 AAAAATTCTCGTGTCTT
2974172 AAAAA
1 AAAAA
2974177 AAGTTTTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (17 bp):
AAAAATTCTCGTGTCTT
Found at i:2982612 original size:190 final size:192
Alignment explanation
Indices: 2982274--2983073 Score: 1506
Period size: 190 Copynumber: 4.2 Consensus size: 192
2982264 CTTTCCAAGG
*
2982274 AAAATCAACTCATATTGCGAGAAAT-AGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
2982338 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGA-GTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
*
2982402 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTATTTTTC
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
2982464 -AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
2982528 T-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
2982592 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
2982654 AAAAT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
*
2982718 T-TAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
2982782 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTC
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
2982843 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTT
2982908 TTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
65 TT-AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
2982973 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
129 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
2983037 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
2983074 GGGACGCCGA
Statistics
Matches: 598, Mismatches: 4, Indels: 12
0.97 0.01 0.02
Matches are distributed among these distances:
189 86 0.14
190 343 0.57
191 9 0.02
193 118 0.20
194 42 0.07
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (192 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:2982757 original size:121 final size:122
Alignment explanation
Indices: 2982532--2982757 Score: 296
Period size: 121 Copynumber: 1.9 Consensus size: 122
2982522 AATTTTTAAA
* ** * *
2982532 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
** ** *
2982597 GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 GTTAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
**
2982654 AAAAT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT-
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT-AATTTA
*
2982717 T-TTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
65 TGTT-AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
2982758 CGGGGCACGC
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
120 2 0.02
121 78 0.88
122 9 0.10
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.35
Consensus pattern (122 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:2983057 original size:122 final size:123
Alignment explanation
Indices: 2982914--2983229 Score: 521
Period size: 120 Copynumber: 2.6 Consensus size: 123
2982904 TTTTTTAAAA
2982914 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
2982979 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
2983037 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGG-ACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
2983099 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* * ** * * *
2983157 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTATTTTTAGTT
2983222 TATGTTTT
64 TATGTTTT
2983230 TTTCAATCTA
Statistics
Matches: 179, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
120 80 0.45
121 37 0.21
122 37 0.21
123 2 0.01
125 23 0.13
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (123 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:2983234 original size:16 final size:17
Alignment explanation
Indices: 2983213--2983246 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
2983203 TGCTGAGGTA
*
2983213 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
2983229 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
2983246 T
1 T
2983247 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:2983378 original size:83 final size:86
Alignment explanation
Indices: 2983152--2983397 Score: 288
Period size: 91 Copynumber: 2.8 Consensus size: 86
2983142 TAATTTTTGT
2983152 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGGC-CAC--GCTGAGGTATTT
* * **
2983216 TCAATTTATGTTTTTTTCAATCTATGC
61 TCAATTTCTGCTTTACTCAATCTA-GC
*
2983243 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTATTTTC
1 TTTTC-AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTC-AGGCCACGCTGAGGTATTTTC
2983307 AATTTCTGCTTTACT-AATTCTA-C
63 AATTTCTGCTTTACTCAA-TCTAGC
* * *
2983330 TTTTC-AAATCAACTCATATTGC-GAGGTGAGTTGAGTCTCAGGCCACGCTGAGGTCTTTTCAAA
1 TTTTCAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAAT
2983393 TTCTG
66 TTCTG
2983398 TTTTTAATTT
Statistics
Matches: 141, Mismatches: 10, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
82 3 0.02
83 39 0.28
85 16 0.11
87 6 0.04
88 2 0.01
89 29 0.21
91 44 0.31
93 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (86 bp):
TTTTCAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAAT
TTCTGCTTTACTCAATCTAGC
Found at i:2983477 original size:100 final size:101
Alignment explanation
Indices: 2983335--2983516 Score: 253
Period size: 100 Copynumber: 1.8 Consensus size: 101
2983325 TCTACTTTTC
* * *
2983335 AAATCAACTCATATTGCGAGGTGAGTTGAGTCTCAGGCCACGCTGAGGTCTTTTCAAATTCT-GT
1 AAATCAACTCATATTGCGAGGT-AGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAAATTCTACT
*
2983399 TTTTAATTTCTATTTTTTAATTTCTGTGTTTCAAAAA
65 TTTCAATTTCTATTTTTTAATTTCTGTGTTTCAAAAA
* *
2983436 AAATC-ACTCATATTGCAAGAGGT-GTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTAC
1 AAATCAACTCATATTGC--GAGGTAGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAAATTCTAC
*
2983499 TTTTCAATTTCTGTTTTT
64 TTTTCAATTTCTATTTTT
2983517 CAAAATCAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
100 45 0.63
101 21 0.30
102 5 0.07
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.41
Consensus pattern (101 bp):
AAATCAACTCATATTGCGAGGTAGTTGAGCCTCAGGCCACGCTGAGGTATTTTCAAATTCTACTT
TTCAATTTCTATTTTTTAATTTCTGTGTTTCAAAAA
Found at i:2983587 original size:54 final size:54
Alignment explanation
Indices: 2983498--2983712 Score: 309
Period size: 54 Copynumber: 4.1 Consensus size: 54
2983488 TCAATTTCTA
*
2983498 CTTTTCAATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
2983552 CTTTT-AATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
2983606 C-TTT---TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
2983657 CTTTTGCAAATTCT-GTTTTCAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGC
1 CTTTT-CAATTTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
2983710 CTT
1 CTT
2983713 GGCTCACGTG
Statistics
Matches: 149, Mismatches: 6, Indels: 13
0.89 0.04 0.08
Matches are distributed among these distances:
51 47 0.32
52 3 0.02
53 37 0.25
54 53 0.36
55 5 0.03
56 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (54 bp):
CTTTTCAATTTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:2983635 original size:51 final size:50
Alignment explanation
Indices: 2983506--2983712 Score: 274
Period size: 51 Copynumber: 4.0 Consensus size: 50
2983496 TACTTTTCAA
*
2983506 TTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
1 TTTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTT
*
2983557 AATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
1 --TTTCTATTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
2983610 TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
1 TTTCTATTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
* *
2983661 TGCAAATTCT-GTTTTCAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTT
1 T-----TTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
2983713 GGCTCACGTG
Statistics
Matches: 143, Mismatches: 5, Indels: 12
0.89 0.03 0.08
Matches are distributed among these distances:
51 51 0.36
53 35 0.24
54 48 0.34
55 5 0.03
56 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (50 bp):
TTTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
Found at i:2983687 original size:105 final size:103
Alignment explanation
Indices: 2983506--2983712 Score: 319
Period size: 105 Copynumber: 2.0 Consensus size: 103
2983496 TACTTTTCAA
* * *
2983506 TTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
1 TTTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAAATTCTAGTTTTC
*
2983571 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
66 AAAAACCAACTCATA-TGCGAGAAGTGAGTTGAGCCTTT
2983610 TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCT-GTT
1 TTTCTATTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AAATTCTAGTT
*
2983674 TTC-AAAATCAACTCATATGCGAGAAGTGAGTTGAGCCTT
63 TTCAAAAACCAACTCATATGCGAGAAGTGAGTTGAGCCTT
2983713 GGCTCACGTG
Statistics
Matches: 95, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
104 32 0.34
105 52 0.55
106 5 0.05
107 6 0.06
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (103 bp):
TTTCTATTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAAATTCTAGTTTTC
AAAAACCAACTCATATGCGAGAAGTGAGTTGAGCCTTT
Found at i:2983971 original size:12 final size:14
Alignment explanation
Indices: 2983948--2983979 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
2983938 TTTAATTTTC
2983948 AAAATTTCAAAA-A
1 AAAATTTCAAAATA
2983961 AAAATTT-AAAATA
1 AAAATTTCAAAATA
2983974 AAAATT
1 AAAATT
2983980 GCATTTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATTTCAAAATA
Found at i:2984012 original size:28 final size:28
Alignment explanation
Indices: 2983975--2984087 Score: 83
Period size: 28 Copynumber: 4.1 Consensus size: 28
2983965 TTTAAAATAA
*
2983975 AAATTGCATTTTGACCCTAAATTTTCCT
1 AAATTTCATTTTGACCCTAAATTTTCCT
*
2984003 AAATTTCATTTTGACCTTAAACTTTT--T
1 AAATTTCATTTTGACCCTAAA-TTTTCCT
* * * *
2984030 -AA-TTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAATTTTC-CT
* * *
2984058 AAATTTCA-TTTAATCCTAAATTTTTCT
1 AAATTTCATTTTGACCCTAAATTTTCCT
2984085 AAA
1 AAA
2984088 AATTACATTT
Statistics
Matches: 66, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
25 11 0.17
26 8 0.12
27 5 0.08
28 29 0.44
29 9 0.14
30 4 0.06
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (28 bp):
AAATTTCATTTTGACCCTAAATTTTCCT
Found at i:2984353 original size:14 final size:13
Alignment explanation
Indices: 2984327--2984362 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
2984317 CGAAGGAAAA
2984327 AAGAAGAAAAGAG
1 AAGAAGAAAAGAG
2984340 AAGAAGAGAAAGAG
1 AAGAAGA-AAAGAG
*
2984354 GAGAAGAAA
1 AAGAAGAAA
2984363 GAAAGAGTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAAGAG
Found at i:2984359 original size:17 final size:16
Alignment explanation
Indices: 2984337--2984369 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
2984327 AAGAAGAAAA
2984337 GAGAAGAAGAGAAAGAG
1 GAGAAGAA-AGAAAGAG
2984354 GAGAAGAAAGAAAGAG
1 GAGAAGAAAGAAAGAG
2984370 TCGGCGTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (16 bp):
GAGAAGAAAGAAAGAG
Found at i:2984453 original size:17 final size:15
Alignment explanation
Indices: 2984430--2984470 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
2984420 TGATAGAAGA
2984430 AGAAGGAAGAAGAAGG
1 AGAAGGAAGAAG-AGG
2984446 ACGAAGGAA-AAGAGG
1 A-GAAGGAAGAAGAGG
2984461 AGAA-GAAGAA
1 AGAAGGAAGAA
2984471 AGAAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 3 0.13
14 5 0.22
15 4 0.17
16 4 0.17
17 7 0.30
ACGTcount: A:0.59, C:0.02, G:0.39, T:0.00
Consensus pattern (15 bp):
AGAAGGAAGAAGAGG
Found at i:2984480 original size:9 final size:10
Alignment explanation
Indices: 2984424--2984493 Score: 51
Period size: 10 Copynumber: 7.5 Consensus size: 10
2984414 AGACTTTGAT
2984424 AGAAGAAGAA
1 AGAAGAAGAA
*
2984434 GGAAGAAGAA
1 AGAAGAAGAA
* * *
2984444 GGACGAAGGA
1 AGAAGAAGAA
*
2984454 A-AAG-AG-G
1 AGAAGAAGAA
2984461 AGAAGAAGAA
1 AGAAGAAGAA
2984471 AGAA-AAGAA
1 AGAAGAAGAA
*
2984480 A-AAGAAAAA
1 AGAAGAAGAA
2984489 AGAAG
1 AGAAG
2984494 TAATAAAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
7 1 0.02
8 7 0.15
9 15 0.32
10 24 0.51
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.00
Consensus pattern (10 bp):
AGAAGAAGAA
Found at i:2984773 original size:10 final size:9
Alignment explanation
Indices: 2984757--2984809 Score: 61
Period size: 10 Copynumber: 5.6 Consensus size: 9
2984747 GCCCAGCCCA
2984757 AAAAAAAAG
1 AAAAAAAAG
2984766 AGAAAAAAAG
1 A-AAAAAAAG
* *
2984776 AAAAGAGAG
1 AAAAAAAAG
2984785 AAAGAAAAAG
1 AAA-AAAAAG
2984795 AAAAAAAAAG
1 -AAAAAAAAG
2984805 AAAAA
1 AAAAA
2984810 GGAGTTAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 15 0.41
10 19 0.51
11 3 0.08
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:2984794 original size:6 final size:6
Alignment explanation
Indices: 2984770--2984810 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
2984760 AAAAAGAGAA
*
2984770 AAAAAG AAAAGAG AGAAAG AAAAAG -AAAA- AAAAAG AAAAAG
1 AAAAAG AAAA-AG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
2984811 GAGTTAATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
5 8 0.27
6 17 0.57
7 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:2997227 original size:3 final size:3
Alignment explanation
Indices: 2997219--2997248 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
2997209 AATAAGTAGG
2997219 TAA TAA TAA TAA TAAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TA
2997249 GGACTAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:2997238 original size:13 final size:13
Alignment explanation
Indices: 2997220--2997246 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2997210 ATAAGTAGGT
2997220 AATAATAATAATA
1 AATAATAATAATA
2997233 AATAATAATAATA
1 AATAATAATAATA
2997246 A
1 A
2997247 TAGGACTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:3000595 original size:31 final size:31
Alignment explanation
Indices: 3000557--3000617 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
3000547 GTATCAAAAC
*
3000557 AAACATTAAAACCAAACTCAAATACCAAATT
1 AAACATTAAAACCAAACCCAAATACCAAATT
* *
3000588 AAACATTAAAATCAAACCCAAGTACCAAAT
1 AAACATTAAAACCAAACCCAAATACCAAAT
3000618 GGTATATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.57, C:0.23, G:0.02, T:0.18
Consensus pattern (31 bp):
AAACATTAAAACCAAACCCAAATACCAAATT
Found at i:3002235 original size:19 final size:18
Alignment explanation
Indices: 3002212--3002258 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
3002202 TAAGTTGTAC
3002212 TTTTAATTTTTTATATAA
1 TTTTAATTTTTTATATAA
**
3002230 TATTTAATAATTTATATAA
1 T-TTTAATTTTTTATATAA
3002249 TTTT-ATTTTT
1 TTTTAATTTTT
3002259 CTAATTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 4 0.17
18 4 0.17
19 16 0.67
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTAATTTTTTATATAA
Found at i:3002906 original size:29 final size:30
Alignment explanation
Indices: 3002845--3002908 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
3002835 AATATATTTT
**
3002845 TTAAGGGCTTAATTGATTGGCAACTTTGGA
1 TTAAGGGCTTAATTGATTGGCAACTTTCAA
*
3002875 TTAAGGG-TTAAATTGATT-GCAATTTTCAA
1 TTAAGGGCTT-AATTGATTGGCAACTTTCAA
3002904 TTAAG
1 TTAAG
3002909 AATTTAATTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 15 0.50
30 15 0.50
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (30 bp):
TTAAGGGCTTAATTGATTGGCAACTTTCAA
Found at i:3002917 original size:29 final size:30
Alignment explanation
Indices: 3002853--3002921 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
3002843 TTTTAAGGGC
** **
3002853 TTAATTGATTGGCAACTTTGGATTAAGGGT
1 TTAATTGATTGGCAACTTTCAATTAAGAAT
* *
3002883 TAAATTGATT-GCAATTTTCAATTAAGAAT
1 TTAATTGATTGGCAACTTTCAATTAAGAAT
3002912 TTAATTGATT
1 TTAATTGATT
3002922 TTTTAAATTT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
29 23 0.72
30 9 0.28
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.43
Consensus pattern (30 bp):
TTAATTGATTGGCAACTTTCAATTAAGAAT
Found at i:3009609 original size:44 final size:44
Alignment explanation
Indices: 3009498--3009712 Score: 240
Period size: 44 Copynumber: 4.9 Consensus size: 44
3009488 TTATAGTTTT
* * * *
3009498 AACCTGTTCCACTGCAACTTCAGGGAAATAAGA-TTCACTATCCTT-
1 AACCTGCTCCACTGCAACTTCAGGGAGATAAGACTT--GTA-ACTTC
**
3009543 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
1 AACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
*
3009587 AACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTC
1 AACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
* * * **
3009631 AACCCGCCCCATTGCAACTTCAGGGAGATAAGA-TTAGTGGCTTC
1 AACCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTC
*
3009675 AATCC-GCTCCACTGCAACTTTAGGGAGATAAGACTTGT
1 AA-CCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
3009713 TATGGTAGAT
Statistics
Matches: 147, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
43 5 0.03
44 107 0.73
45 33 0.22
46 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (44 bp):
AACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
Found at i:3009800 original size:44 final size:43
Alignment explanation
Indices: 3009764--3009898 Score: 101
Period size: 45 Copynumber: 3.0 Consensus size: 43
3009754 AGGATTCATC
* *
3009764 ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTAAT
1 ATTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-AT
* * * * * * *
3009807 AGCTTCAATCTGCTCCGCTGTAATTTTAGGGAGATAAGAGTTGCT
1 A-TTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-AT
* * * *
3009852 ATCTTCAGTCTACTCCACTGCAACTTCAGAGAGATAAAACTTGAT
1 AT-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-AT
3009897 AT
1 AT
3009899 GATAGATTTA
Statistics
Matches: 69, Mismatches: 20, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
43 1 0.01
44 30 0.43
45 38 0.55
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (43 bp):
ATTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTAT
Found at i:3009924 original size:183 final size:183
Alignment explanation
Indices: 3009681--3010028 Score: 509
Period size: 183 Copynumber: 1.9 Consensus size: 183
3009671 CTTCAATCCG
* * * * * *
3009681 CTCCACTGCAACTTTAGGGAGATAAGACTTGTTATGGTAGATTTAATCTGACCTACTGCAACCTC
1 CTCCACTGCAACTTCAGAGAGATAAAACTTGATATGATAGATTTAATCCGACCTACTGCAACCTC
* * *
3009746 AAAGGTATAG-GATTCATCATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGC
66 AAAGGCAT-GTGATTCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATCAATAGC
* * * *
3009810 TTCAATCTGCTCCGCTGTAATTTTAGGGAGATAAGAGTTGCTATCTTCAGTCTA
130 TTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGAGTTGCTATCTTCAGTCTA
3009864 CTCCACTGCAACTTCAGAGAGATAAAACTTGATATGATAGATTTAATCCGACCTACTGCAACCTC
1 CTCCACTGCAACTTCAGAGAGATAAAACTTGATATGATAGATTTAATCCGACCTACTGCAACCTC
* * * ** *
3009929 AGAGGCATGTGATTCATCGTTTTAATCCGTTCCACTGCAACTTCAGGGAGATAGGATCGGTGGCT
66 AAAGGCATGTGATTCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATCAATAGCT
3009994 TCAATCTGCTCCACTGCAACTTTAGGAAGATAAGA
131 TCAATCTGCTCCACTGCAACTTTAGGAAGATAAGA
3010029 TCTGCCATAA
Statistics
Matches: 145, Mismatches: 19, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
182 1 0.01
183 144 0.99
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (183 bp):
CTCCACTGCAACTTCAGAGAGATAAAACTTGATATGATAGATTTAATCCGACCTACTGCAACCTC
AAAGGCATGTGATTCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATCAATAGCT
TCAATCTGCTCCACTGCAACTTTAGGAAGATAAGAGTTGCTATCTTCAGTCTA
Found at i:3010124 original size:99 final size:98
Alignment explanation
Indices: 3009949--3010127 Score: 234
Period size: 99 Copynumber: 1.8 Consensus size: 98
3009939 GATTCATCGT
** * * * *
3009949 TTTAATCCGTTCCACTGCAACTTCAGGGAGATAGGATCGGTGGCTTCAATCTGCTCCACTGCAAC
1 TTTAATCCGTTCCACTGCAACGCCAAGGAAATAAGATCGCTGGCTTCAATCTGCTCCACTGCAAC
*
3010014 TTTAGGAAGATAAGATCTGCCATAATTTGTAGC
66 TTCAGGAAGATAAGATCTGCCATAATTTGTAGC
* * * *
3010047 TTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGTCTTTAGTCTGCTCCACTGCAA
1 TTTAATCCGTTCCACTGCAACGCCAAGGAAATAAGA-TCGCTGGCTTCAATCTGCTCCACTGCAA
3010112 CTTCA-GAGAGATAAGA
65 CTTCAGGA-AGATAAGA
3010128 CTTGTAACTT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
98 32 0.47
99 36 0.53
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (98 bp):
TTTAATCCGTTCCACTGCAACGCCAAGGAAATAAGATCGCTGGCTTCAATCTGCTCCACTGCAAC
TTCAGGAAGATAAGATCTGCCATAATTTGTAGC
Found at i:3010262 original size:181 final size:182
Alignment explanation
Indices: 3009997--3010350 Score: 457
Period size: 181 Copynumber: 1.9 Consensus size: 182
3009987 GGTGGCTTCA
* * *
3009997 ATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCT--CATAATTTATAGCTTTAATCTATTCCAC
* *
3010062 TGCAACGCCAAGGAAATAAGATTCGCTGTCTTT-AGTCTGCTCCACTGCAACTTCA-GAGAGATA
64 TGCAACGCCAAGGAAATAAGATTCACTAT-TTTCAGTCTGCTCCACTGCAACTTCATG-GAGATA
* *
3010125 AGACTTGTAACTTCAACCTACTCCACTGCAACTTTAGGGAGATAAATTTTGCTATG
127 AGACTTGTAACTTCAACCTACCCCACTGCAACTTCAGGGAGATAAATTTTGCTATG
* * *
3010181 ATCTGCTCTACTGCAACTTCA-GAGAGATAAGATCT-TTTATTTATAGCTTTAATCTATTCCACT
1 ATCTGCTCCACTGCAACTTCAGGA-AGATAAGATCTCATAATTTATAGCTTTAATCTATTCCACT
*** *
3010244 GCAATTTC-AGGAAAATAAGATTCACTATTTTCAGTCTGCTCGACTGCAACTTCATGGAGATAAG
65 GCAACGCCAAGG-AAATAAGATTCACTATTTTCAGTCTGCTCCACTGCAACTTCATGGAGATAAG
* * * *
3010308 ACTTGTATCTTCAATCTGCCCCACTGCAACTTCAGGGGGATAA
129 ACTTGTAACTTCAACCTACCCCACTGCAACTTCAGGGAGATAA
3010351 GATTAGTGGC
Statistics
Matches: 148, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
180 6 0.04
181 109 0.74
182 1 0.01
183 2 0.01
184 30 0.20
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (182 bp):
ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTCATAATTTATAGCTTTAATCTATTCCACTG
CAACGCCAAGGAAATAAGATTCACTATTTTCAGTCTGCTCCACTGCAACTTCATGGAGATAAGAC
TTGTAACTTCAACCTACCCCACTGCAACTTCAGGGAGATAAATTTTGCTATG
Found at i:3010341 original size:44 final size:44
Alignment explanation
Indices: 3010286--3010398 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 44
3010276 AGTCTGCTCG
* * *
3010286 ACTGCAACTTCATGGAGATAAGACTT-GTATCTTCAATCTGCCCC
1 ACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATATGCCCC
* * *
3010330 ACTGCAACTTCAGGGGGATAAGATTAGTGGCTTCAATATGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATATGCCCC
**
3010374 ACTGCCTCTTCAGGGAGATAAGATT
1 ACTGCAACTTCAGGGAGATAAGATT
3010399 CGCCATGATG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 2 0.03
44 57 0.97
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATATGCCCC
Found at i:3020091 original size:20 final size:21
Alignment explanation
Indices: 3020066--3020108 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
3020056 CCAAATCTAC
*
3020066 TTTATAAAAATT-TTAAAAAT
1 TTTATAAAAATTCATAAAAAT
3020086 TTTATAAAAATTCATAAAAAT
1 TTTATAAAAATTCATAAAAAT
3020107 TT
1 TT
3020109 CCACTTTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTATAAAAATTCATAAAAAT
Found at i:3020093 original size:11 final size:10
Alignment explanation
Indices: 3020066--3020108 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
3020056 CCAAATCTAC
3020066 TTTATAAAAA
1 TTTATAAAAA
3020076 TTT-TAAAAA
1 TTTATAAAAA
3020085 TTTTATAAAAA
1 -TTTATAAAAA
*
3020096 TTCATAAAAA
1 TTTATAAAAA
3020106 TTT
1 TTT
3020109 CCACTTTGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 6 0.21
10 17 0.59
11 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:3024569 original size:19 final size:20
Alignment explanation
Indices: 3024533--3024574 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
3024523 TTATTATTCA
* *
3024533 TTTAATATTAAGAGATAAAT
1 TTTAAAATTAAGACATAAAT
3024553 TTTAAAATT-AGACATAAAT
1 TTTAAAATTAAGACATAAAT
3024572 TTT
1 TTT
3024575 GATTTAACGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (20 bp):
TTTAAAATTAAGACATAAAT
Found at i:3028839 original size:19 final size:19
Alignment explanation
Indices: 3028795--3028844 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
3028785 ATGGATAATT
3028795 ATTTTGTACACAAATAGTAA
1 ATTTTGTACACAAATA-TAA
*
3028815 ATTTTGTACCCAAAT-TAA
1 ATTTTGTACACAAATATAA
3028833 GATTTTGT-CACA
1 -ATTTTGTACACA
3028845 TTTTTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 6 0.22
19 7 0.26
20 14 0.52
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
ATTTTGTACACAAATATAA
Found at i:3029961 original size:64 final size:64
Alignment explanation
Indices: 3029865--3029992 Score: 195
Period size: 64 Copynumber: 2.0 Consensus size: 64
3029855 AAAATGATTA
* * * * *
3029865 AATTAAAATACAGAGATTAAATTCACAGTTTTTA-TAAAGTTAAAATTTAACCTTAATTTATTTG
1 AATTAAAATAAAAAAATTAAATCCACAATTTTTATTAAA-TTAAAATTTAACCTTAATTTATTTG
3029929 AATTAAAATAAAAAAATTAAATCCACAATTTTTATTAAATTAAAATTTAACCTTAATTTATTTG
1 AATTAAAATAAAAAAATTAAATCCACAATTTTTATTAAATTAAAATTTAACCTTAATTTATTTG
3029993 CCTATCTTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 54 0.93
65 4 0.07
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.41
Consensus pattern (64 bp):
AATTAAAATAAAAAAATTAAATCCACAATTTTTATTAAATTAAAATTTAACCTTAATTTATTTG
Found at i:3031695 original size:13 final size:13
Alignment explanation
Indices: 3031677--3031704 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3031667 GAAATACATA
3031677 TCTTAGATCCAAG
1 TCTTAGATCCAAG
3031690 TCTTAGATCCAAG
1 TCTTAGATCCAAG
3031703 TC
1 TC
3031705 GATTTGATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (13 bp):
TCTTAGATCCAAG
Found at i:3032576 original size:32 final size:32
Alignment explanation
Indices: 3032538--3032603 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
3032528 TACCTTGTTG
*
3032538 TTTTATGTAATCTATGCAAGTTGTTGGTTATC
1 TTTTATGTAATCTATGCAAGTTGTCGGTTATC
3032570 TTTTATGTAATCTATGCAAGTTGTCGGTTATC
1 TTTTATGTAATCTATGCAAGTTGTCGGTTATC
3032602 TT
1 TT
3032604 AGGATTGAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.11, G:0.18, T:0.50
Consensus pattern (32 bp):
TTTTATGTAATCTATGCAAGTTGTCGGTTATC
Found at i:3045455 original size:23 final size:23
Alignment explanation
Indices: 3045383--3045557 Score: 196
Period size: 23 Copynumber: 7.8 Consensus size: 23
3045373 ATCAGTATAT
3045383 GACACAT-AAGTGCCTG--ATAC
1 GACACATAAAGTGCCTGAAATAC
** * *
3045403 GACACACGAGGTGCCTAAAATAC
1 GACACATAAAGTGCCTGAAATAC
* *
3045426 GACACATGAGGTGCCTGAAATAC
1 GACACATAAAGTGCCTGAAATAC
* *
3045449 GACACATAAAGCGCCTGATATAC
1 GACACATAAAGTGCCTGAAATAC
* * * *
3045472 AACACATAAAATACCTGAAATAT
1 GACACATAAAGTGCCTGAAATAC
*
3045495 GACACATAAAGTGGCTGAAATA-
1 GACACATAAAGTGCCTGAAATAC
*
3045517 GACACATAAAGTGTCTGAAATAC
1 GACACATAAAGTGCCTGAAATAC
3045540 GACACATAAAGTGCCTGA
1 GACACATAAAGTGCCTGA
3045558 TCGGCATAGC
Statistics
Matches: 130, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
20 6 0.05
21 7 0.05
22 21 0.16
23 96 0.74
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (23 bp):
GACACATAAAGTGCCTGAAATAC
Found at i:3048095 original size:19 final size:19
Alignment explanation
Indices: 3048054--3048095 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
3048044 ATTGAACTTG
* * *
3048054 AAAATTGGACCCAAGATCG
1 AAAATTGAACCCAAGAACC
3048073 AAAATTGAACCCAAGAACC
1 AAAATTGAACCCAAGAACC
3048092 AAAA
1 AAAA
3048096 CCCAGGACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.12
Consensus pattern (19 bp):
AAAATTGAACCCAAGAACC
Found at i:3048484 original size:31 final size:30
Alignment explanation
Indices: 3048449--3048547 Score: 110
Period size: 31 Copynumber: 3.2 Consensus size: 30
3048439 TGTTTTAATG
3048449 AATTTAATATTTATCTAGATAGTATTTTATT
1 AATTTAATATTTATCTAGATA-TATTTTATT
* * **
3048480 AATTTAATATTAATAT-GATATATTAAATTT
1 AATTTAATATTTATCTAGATATATTTTA-TT
* *
3048510 AATTTAATATTTATCTAGATAATGTTTTAGT
1 AATTTAATATTTATCTAGAT-ATATTTTATT
3048541 AATTTAA
1 AATTTAA
3048548 GATTAATGTG
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
29 5 0.09
30 20 0.36
31 25 0.45
32 5 0.09
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (30 bp):
AATTTAATATTTATCTAGATATATTTTATT
Found at i:3053678 original size:18 final size:19
Alignment explanation
Indices: 3053627--3053681 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
3053617 ATTACAAAAT
3053627 AATTCAAAATAATTT-TCAAA
1 AATTCAAAAT-ATTTAT-AAA
3053647 AATTCAAAATATTTATAAA
1 AATTCAAAATATTTATAAA
*
3053666 AATTCTAAA-ATTTATA
1 AATTCAAAATATTTATA
3053682 TTTTTAAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 7 0.21
19 15 0.45
20 11 0.33
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTCAAAATATTTATAAA
Found at i:3056432 original size:4 final size:4
Alignment explanation
Indices: 3056425--3056476 Score: 56
Period size: 4 Copynumber: 13.5 Consensus size: 4
3056415 TTCATTCATC
* *
3056425 TATT TATTT TATT TA-T TA-T TATT TTTT TA-T TATC TATT TATT TATT
1 TATT TA-TT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
3056471 TATT TA
1 TATT TA
3056477 CCTATTACTC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 9 0.22
4 28 0.68
5 4 0.10
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:3056448 original size:15 final size:15
Alignment explanation
Indices: 3056428--3056470 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
3056418 ATTCATCTAT
3056428 TTATTTTATTTATTA
1 TTATTTTATTTATTA
3056443 TTATTTT-TTTATTA
1 TTATTTTATTTATTA
3056457 TCTA-TTTATTTATT
1 T-TATTTTATTTATT
3056471 TATTTACCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (15 bp):
TTATTTTATTTATTA
Found at i:3056465 original size:19 final size:19
Alignment explanation
Indices: 3056422--3056474 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
3056412 TCATTCATTC
*
3056422 ATCTATTTA-TTTTAT-TT
1 ATCTATTTATTTTTTTATT
3056439 AT-TA-TTATTTTTTTATT
1 ATCTATTTATTTTTTTATT
*
3056456 ATCTATTTATTTATTTATT
1 ATCTATTTATTTTTTTATT
3056475 TACCTATTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 3 0.10
16 7 0.23
17 6 0.20
18 2 0.07
19 12 0.40
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
ATCTATTTATTTTTTTATT
Found at i:3056746 original size:6 final size:6
Alignment explanation
Indices: 3056683--3056734 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
3056673 ATTACTTCAT
* * * *
3056683 TTAATTA TTATTA CTAATA TGAGTA TTAATA TTAATA TTAATA TTAATA
1 TTAA-TA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
3056732 TTA
1 TTA
3056735 TGTTATTATT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
6 34 0.92
7 3 0.08
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:3060343 original size:19 final size:20
Alignment explanation
Indices: 3060307--3060358 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
3060297 GTCTTTTTTT
3060307 TGCATT-CATTTCATTCATCA
1 TGCATTACATTTCATTCAT-A
3060327 -GCATTACATTTCA-TCATA
1 TGCATTACATTTCATTCATA
*
3060345 TGCATTAAATTTCA
1 TGCATTACATTTCA
3060359 AAAAAAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 1 0.03
19 21 0.72
20 7 0.24
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (20 bp):
TGCATTACATTTCATTCATA
Found at i:3067583 original size:43 final size:43
Alignment explanation
Indices: 3067516--3067627 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
3067506 AATGCCATGT
* * **
3067516 CCCAGACATGGTCTTACATGGAAATCTTGTAA-CGATGCCAATAG
1 CCCAAACATGGTCTTACA-CGAAATC-TCAAATCGATGCCAATAG
* *
3067560 CCC-AACTATGGTCTTATACGAAATCTCAAATCGATGTCAATAG
1 CCCAAAC-ATGGTCTTACACGAAATCTCAAATCGATGCCAATAG
3067603 CCCAAACATGGTCTTACACGAAATC
1 CCCAAACATGGTCTTACACGAAATC
3067628 ACACATCGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
42 3 0.05
43 39 0.67
44 16 0.28
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
CCCAAACATGGTCTTACACGAAATCTCAAATCGATGCCAATAG
Found at i:3067786 original size:31 final size:30
Alignment explanation
Indices: 3067745--3067888 Score: 177
Period size: 31 Copynumber: 4.8 Consensus size: 30
3067735 ATCCAATGCT
* *
3067745 CAAATC-AATTCAGTAATATATATCCATATA
1 CAAATCAAATTCAGCAATGTATAT-CATATA
*
3067775 CGAATCAAATTCAGCAATGTATAATCATATA
1 CAAATCAAATTCAGCAATGTAT-ATCATATA
*
3067806 CAAATCAAATTC-GACAATGTATATCTATAAA
1 CAAATCAAATTCAG-CAATGTATATC-ATATA
*
3067837 CAATTCAAATTCAGCAATGTATAT-ATATA
1 CAAATCAAATTCAGCAATGTATATCATATA
*
3067866 CAAATCAAATTCGGCAATGTATA
1 CAAATCAAATTCAGCAATGTATA
3067889 AAACATATAC
Statistics
Matches: 100, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
29 25 0.25
30 9 0.09
31 63 0.63
32 3 0.03
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.31
Consensus pattern (30 bp):
CAAATCAAATTCAGCAATGTATATCATATA
Found at i:3067886 original size:60 final size:62
Alignment explanation
Indices: 3067745--3067888 Score: 197
Period size: 62 Copynumber: 2.4 Consensus size: 62
3067735 ATCCAATGCT
* * * *
3067745 CAAATC-AATTCAGTAATATATATCCATATACGAATCAAATTCAGCAATGTATAATCATATA
1 CAAATCAAATTCGGCAATGTATATCCATAAACGAATCAAATTCAGCAATGTATAATCATATA
* *
3067806 CAAATCAAATTCGACAATGTATATCTATAAAC-AATTCAAATTCAGCAATGTAT-AT-ATATA
1 CAAATCAAATTCGGCAATGTATATCCATAAACGAA-TCAAATTCAGCAATGTATAATCATATA
3067866 CAAATCAAATTCGGCAATGTATA
1 CAAATCAAATTCGGCAATGTATA
3067889 AAACATATAC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
60 27 0.36
61 10 0.14
62 37 0.50
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.31
Consensus pattern (62 bp):
CAAATCAAATTCGGCAATGTATATCCATAAACGAATCAAATTCAGCAATGTATAATCATATA
Found at i:3068919 original size:24 final size:24
Alignment explanation
Indices: 3068886--3068983 Score: 107
Period size: 24 Copynumber: 4.2 Consensus size: 24
3068876 AATTAATATT
*
3068886 AAAATAATTGTTCCTACTAGACCC
1 AAAATCATTGTTCCTACTAGACCC
3068910 AAAATCATTGTTCCTACTAGACCC
1 AAAATCATTGTTCCTACTAGACCC
* * *
3068934 AAAATCGA--ATT--T-GTAGTCCC
1 AAAATC-ATTGTTCCTACTAGACCC
*
3068954 GAAATCATTGTTCCTACTAGACCC
1 AAAATCATTGTTCCTACTAGACCC
3068978 AAAATC
1 AAAATC
3068984 GGACTGTTAC
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
19 1 0.02
20 11 0.19
21 3 0.05
23 3 0.05
24 40 0.68
25 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (24 bp):
AAAATCATTGTTCCTACTAGACCC
Found at i:3070465 original size:29 final size:30
Alignment explanation
Indices: 3070406--3070463 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
3070396 TCCGAGCCTT
*
3070406 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
3070436 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
3070464 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:3070693 original size:13 final size:13
Alignment explanation
Indices: 3070675--3070706 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
3070665 TTTCCAGCAA
3070675 TTATGAATTTATT
1 TTATGAATTTATT
3070688 TTATGAATTTATT
1 TTATGAATTTATT
*
3070701 TGATGA
1 TTATGA
3070707 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:3070914 original size:50 final size:50
Alignment explanation
Indices: 3070801--3071042 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
3070791 ATTTGGGTAA
* * *
3070801 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
3070857 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3070907 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3070957 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
3071007 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
3071043 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:3070990 original size:100 final size:103
Alignment explanation
Indices: 3070801--3071050 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
3070791 ATTTGGGTAA
3070801 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
3070866 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
3070907 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
3070969 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
3071007 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
3071051 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:3078056 original size:29 final size:30
Alignment explanation
Indices: 3077997--3078054 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
3077987 TCCGAGCCTT
*
3077997 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
3078027 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
3078055 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:3078284 original size:13 final size:13
Alignment explanation
Indices: 3078266--3078297 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
3078256 TTTCCAGCAA
3078266 TTATGAATTTATT
1 TTATGAATTTATT
3078279 TTATGAATTTATT
1 TTATGAATTTATT
*
3078292 TGATGA
1 TTATGA
3078298 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:3078505 original size:50 final size:50
Alignment explanation
Indices: 3078392--3078633 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
3078382 ATTTGGGTAA
* * *
3078392 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
3078448 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3078498 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3078548 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
3078598 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
3078634 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:3078581 original size:100 final size:103
Alignment explanation
Indices: 3078392--3078641 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
3078382 ATTTGGGTAA
3078392 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
3078457 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
3078498 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
3078560 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
3078598 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
3078642 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:3080676 original size:44 final size:44
Alignment explanation
Indices: 3080610--3080971 Score: 208
Period size: 44 Copynumber: 7.9 Consensus size: 44
3080600 CATCGCAGCA
* * * * **
3080610 AATCTTATCTTCTTGAATTTGCAGTGGAGCAAATTAGAGCTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTACG
* *
3080654 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATT-GAAGCTACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAG-AGCTACG
* * * * *
3080698 AGTATTATCTCTCTGAAGTTGCAGTAGAGTAGATT-GAAGCTACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAG-AGCTACG
* * *** * *
3080742 AGTCTTATCTCCCTAAAGTTGCAGCCAAGCAGATTAAAGATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTA-CG
* * * *
3080787 AATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTAC--G
* * * * *
3080833 TTACAGATCTTATCTCCCTAAAGTTACAATGGAACAGATTAAAGCTACGAG
1 ----A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTAC--G
* * * *
3080884 TTACAAATCTTATCACCTTGAAATTGCAGTGGAGTAGATT-GAAGCTACG
1 -----AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAG-AGCTACG
* * * *
3080933 AGTCTTATTTCCCTAAAGTTGTAGTGGAGCAGATTAGAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAG
3080972 TGACAAACCC
Statistics
Matches: 248, Mismatches: 57, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
43 1 0.00
44 135 0.54
45 36 0.15
46 1 0.00
49 1 0.00
50 1 0.00
51 71 0.29
52 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTACG
Found at i:3080923 original size:51 final size:51
Alignment explanation
Indices: 3080787--3080935 Score: 165
Period size: 51 Copynumber: 2.9 Consensus size: 51
3080777 AAAGATAGCG
** * * *
3080787 AATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACA
1 AATCTTATCACCCTGAAATTGCAGTGGAACAGATTAAAGCTACGAGTTACA
* * * *
3080838 GATCTTATCTCCCT-AAAGTTACAATGGAACAGATTAAAGCTACGAGTTACA
1 AATCTTATCACCCTGAAA-TTGCAGTGGAACAGATTAAAGCTACGAGTTACA
* ** *
3080889 AATCTTATCACCTTGAAATTGCAGTGGAGTAGATTGAAGCTACGAGT
1 AATCTTATCACCCTGAAATTGCAGTGGAACAGATTAAAGCTACGAGT
3080936 CTTATTTCCC
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
50 2 0.02
51 76 0.94
52 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (51 bp):
AATCTTATCACCCTGAAATTGCAGTGGAACAGATTAAAGCTACGAGTTACA
Found at i:3082579 original size:4 final size:4
Alignment explanation
Indices: 3082572--3082629 Score: 54
Period size: 4 Copynumber: 15.5 Consensus size: 4
3082562 CATTCATTCG
*
3082572 TTTA TTTA TTT- TATTA TTTA -TTA -TTA -TTA -TTA TCTA TTTA TTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
*
3082616 TTTA TTTA CTTA TT
1 TTTA TTTA TTTA TT
3082630 ACTCATTTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
3 13 0.28
4 33 0.70
5 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:3082593 original size:16 final size:16
Alignment explanation
Indices: 3082572--3082629 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
3082562 CATTCATTCG
3082572 TTTATTTATTTTATTA
1 TTTATTTATTTTATTA
3082588 TTTA-TTATTATTATTA
1 TTTATTTATT-TTATTA
*
3082604 TCTATTTA-TTTATTTA
1 TTTATTTATTTTA-TTA
*
3082620 TTTACTTATT
1 TTTATTTATT
3082630 ACTCATTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 8 0.23
16 23 0.66
17 4 0.11
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTTATTTTATTA
Found at i:3085612 original size:29 final size:31
Alignment explanation
Indices: 3085569--3085628 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
3085559 GAATTGGATC
*
3085569 AAATCAAAATTTCATGTATA-AAATTGCACA
1 AAATCAAAAGTTCATGTATACAAATTGCACA
*
3085599 AAATC-AAAGTTCATGTATACAATTTGCACA
1 AAATCAAAAGTTCATGTATACAAATTGCACA
3085629 TTAAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.30
Consensus pattern (31 bp):
AAATCAAAAGTTCATGTATACAAATTGCACA
Found at i:3086334 original size:13 final size:13
Alignment explanation
Indices: 3086316--3086340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3086306 TGATTTATAT
3086316 GTGTGAAAATTTC
1 GTGTGAAAATTTC
3086329 GTGTGAAAATTT
1 GTGTGAAAATTT
3086341 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:3086754 original size:96 final size:99
Alignment explanation
Indices: 3086556--3086754 Score: 323
Period size: 96 Copynumber: 2.0 Consensus size: 99
3086546 TTAGTAAATA
*
3086556 ATGTTAAATTAAAATAAAACAAAATGTATTGTCATCTTCCACTGTTCATCTTCACCGAAAATTCA
1 ATGTTAAATTAAAATAAAACAAAATGTATTG--ATCTTCCACTATTCATCTTCACCGAAAATTCA
* *
3086621 AGGAGAAGAAAGCCATTGTTGGCTTTAACATTCGGCC
64 A-GAGAAGAAAGACATTGTTGGCTTTAACATTAGGCC
3086658 ATGTTAAATTAAAATAAAACAAAATGTATTG-TCTTCCACTATTCATCTTCACCGAAAATTC-A-
1 ATGTTAAATTAAAATAAAACAAAATGTATTGATCTTCCACTATTCATCTTCACCGAAAATTCAAG
3086720 AGAAGAAAGACATTGTTGGCTTTAACATTAGGCC
66 AGAAGAAAGACATTGTTGGCTTTAACATTAGGCC
3086754 A
1 A
3086755 AGCTCTCATT
Statistics
Matches: 94, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
96 33 0.35
98 1 0.01
99 29 0.31
102 31 0.33
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.31
Consensus pattern (99 bp):
ATGTTAAATTAAAATAAAACAAAATGTATTGATCTTCCACTATTCATCTTCACCGAAAATTCAAG
AGAAGAAAGACATTGTTGGCTTTAACATTAGGCC
Found at i:3090048 original size:68 final size:68
Alignment explanation
Indices: 3089959--3090115 Score: 208
Period size: 68 Copynumber: 2.3 Consensus size: 68
3089949 GAGATGATAG
** * * *
3089959 ACGACGTCGAGACGAGCAAGGTGTAGTGCGTCAAGATGACGCAACGTCCTTGGCAACCAAGCAAG
1 ACGACGTCGAGACGAGCAAGGTGTAGCACGTCAAGATGACACAACATCCTTAGCAACCAAGCAAG
3090024 GCT
66 GCT
* * **
3090027 ACGATGTCGAGACGAGCAAGGTGTAGCACGTCGAGATGACATGACATCCTTAGCAACCAAGCAAG
1 ACGACGTCGAGACGAGCAAGGTGTAGCACGTCAAGATGACACAACATCCTTAGCAACCAAGCAAG
3090092 GCT
66 GCT
* *
3090095 ACGACATCGTGACGAG-AAGGT
1 ACGACGTCGAGACGAGCAAGGT
3090116 ATGCCACATC
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
67 5 0.06
68 72 0.94
ACGTcount: A:0.31, C:0.24, G:0.30, T:0.15
Consensus pattern (68 bp):
ACGACGTCGAGACGAGCAAGGTGTAGCACGTCAAGATGACACAACATCCTTAGCAACCAAGCAAG
GCT
Found at i:3092811 original size:20 final size:20
Alignment explanation
Indices: 3092778--3092827 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
3092768 TTCAATAATT
**
3092778 TTAATTAAAAATAATAAAA-A
1 TTAATTAATTATAA-AAAATA
3092798 TTAATTAATTATAAAAAATA
1 TTAATTAATTATAAAAAATA
3092818 TT--TTAATTAT
1 TTAATTAATTAT
3092828 TATTTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 8 0.30
19 4 0.15
20 15 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAATTAATTATAAAAAATA
Found at i:3097625 original size:17 final size:17
Alignment explanation
Indices: 3097599--3097633 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
3097589 CGTGAATTTG
* *
3097599 GCGCGGAGGCGCTACAC
1 GCGCGCAGGCGCAACAC
3097616 GCGCGCAGGCGCAACAC
1 GCGCGCAGGCGCAACAC
3097633 G
1 G
3097634 TGCAAGGAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.37, G:0.40, T:0.03
Consensus pattern (17 bp):
GCGCGCAGGCGCAACAC
Found at i:3102100 original size:16 final size:16
Alignment explanation
Indices: 3102079--3102112 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
3102069 TTATAATCAT
3102079 AATTAATATATT-AATA
1 AATTAAT-TATTGAATA
3102095 AATTAATTATTGAATA
1 AATTAATTATTGAATA
3102111 AA
1 AA
3102113 ATATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
AATTAATTATTGAATA
Found at i:3104975 original size:22 final size:22
Alignment explanation
Indices: 3104945--3104986 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
3104935 TTAATTTTTT
*
3104945 AAAATTTTAAA-AATATTTAAAA
1 AAAAATTTAAATAAT-TTTAAAA
3104967 AAAAATTTAAATAATTTTAA
1 AAAAATTTAAATAATTTTAA
3104987 CGATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAAATTTAAATAATTTTAAAA
Found at i:3113784 original size:49 final size:48
Alignment explanation
Indices: 3113625--3113784 Score: 151
Period size: 49 Copynumber: 3.2 Consensus size: 48
3113615 TTATGTGTTC
* * * *
3113625 TGCATTTAATTAAGTCATGCATTAAAGCATCTCATATGTTCATAAAGTT
1 TGCATTTAATTATGTCATGCATT-AAGTAACTCATATGTTCATTAAGTT
** * * * *
3113674 TGTGTTTTAATTATGTCATGTATTAAGTAACTCCTATATTAATTAAG-T
1 TG-CATTTAATTATGTCATGCATTAAGTAACTCATATGTTCATTAAGTT
* * *
3113722 TGCATCTTAAATTATGTCATGCATTATGTAACTCATTTGTTCATTTAGTT
1 TGCAT-TT-AATTATGTCATGCATTAAGTAACTCATATGTTCATTAAGTT
3113772 TGCATTTCAATTA
1 TGCATTT-AATTA
3113785 AACCATGCAT
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
47 1 0.01
48 5 0.06
49 58 0.67
50 23 0.26
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (48 bp):
TGCATTTAATTATGTCATGCATTAAGTAACTCATATGTTCATTAAGTT
Found at i:3116904 original size:23 final size:22
Alignment explanation
Indices: 3116861--3116918 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
3116851 AAAGGGTATC
* *
3116861 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
3116882 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
3116905 TGCATATCATATCT
1 TACAAATCATATCT
3116919 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:3116921 original size:19 final size:19
Alignment explanation
Indices: 3116897--3116950 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
3116887 AATCATATCT
3116897 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
3116916 TCTAAGATTGCATATAATA
1 TCTAAGATTGCATATCATA
3116935 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
3116951 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:3130967 original size:15 final size:15
Alignment explanation
Indices: 3130947--3130975 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3130937 GCTGCAGCAT
3130947 TGCAGAGGAGCAAAG
1 TGCAGAGGAGCAAAG
3130962 TGCAGAGGAGCAAA
1 TGCAGAGGAGCAAA
3130976 TGTTGTCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.14, G:0.38, T:0.07
Consensus pattern (15 bp):
TGCAGAGGAGCAAAG
Found at i:3134383 original size:30 final size:31
Alignment explanation
Indices: 3134327--3134389 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
3134317 AGATGCTCAC
3134327 TGAACTATTTGAAAGTTTTCATTTAAGTCAT
1 TGAACTATTTGAAAGTTTTCATTTAAGTCAT
*
3134358 TGAACTATTTGAAA-TTTTTATTTAAGTCAT
1 TGAACTATTTGAAAGTTTTCATTTAAGTCAT
3134388 TG
1 TG
3134390 GGATGTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 17 0.55
31 14 0.45
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.48
Consensus pattern (31 bp):
TGAACTATTTGAAAGTTTTCATTTAAGTCAT
Found at i:3150159 original size:22 final size:22
Alignment explanation
Indices: 3150099--3150156 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
3150089 GATATGCAAT
3150099 GATATGCAATCTT---AGATAA
1 GATATGCAATCTTAGAAGATAA
3150118 GATATGCAATCTTAGAAGATAA
1 GATATGCAATCTTAGAAGATAA
* *
3150140 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
3150157 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAA
Found at i:3150975 original size:24 final size:22
Alignment explanation
Indices: 3150948--3151153 Score: 105
Period size: 24 Copynumber: 8.8 Consensus size: 22
3150938 ATGTTTAAAC
3150948 TTATTATTAAATTTATCATTAATA
1 TTATT-TTAAATTTATCATT-ATA
**
3150972 TTATCTAAGTT-AATTTATTGTATATTA
1 TTAT-T---TTAAATTTATCAT-TA-TA
* * *
3150999 TTAATTTAGATTTATCACGTTTTA
1 TTATTTTAAATTTATCA--TTATA
*
3151023 TTATTTGT-AATTTATCAATATCA
1 TTATTT-TAAATTTATCATTAT-A
* * * *
3151046 TTATTTTAAATTCATCGTAACA
1 TTATTTTAAATTTATCATTATA
3151068 TTATTTTAAATTTATCATGTATA
1 TTATTTTAAATTTATCAT-TATA
3151091 TTTATTTTAAAATTTATCATTA-A
1 -TTATTTT-AAATTTATCATTATA
* *
3151114 -TATTTTAAAATTATTATGTACTA
1 TTATTTTAAATTTATCAT-TA-TA
**
3151137 TTATTTTGGATTTATCA
1 TTATTTTAAATTTATCA
3151154 CATATGATTA
Statistics
Matches: 137, Mismatches: 27, Indels: 36
0.69 0.14 0.18
Matches are distributed among these distances:
20 9 0.07
21 8 0.06
22 20 0.15
23 21 0.15
24 46 0.34
25 14 0.10
26 11 0.08
27 8 0.06
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.54
Consensus pattern (22 bp):
TTATTTTAAATTTATCATTATA
Found at i:3151048 original size:23 final size:23
Alignment explanation
Indices: 3151022--3151084 Score: 76
Period size: 22 Copynumber: 2.8 Consensus size: 23
3151012 ATCACGTTTT
*
3151022 ATTATTTGT-AATTTATCAATATC
1 ATTATTT-TAAATTTATCAATAAC
* *
3151045 ATTATTTTAAATTCATC-GTAAC
1 ATTATTTTAAATTTATCAATAAC
3151067 ATTATTTTAAATTTATCA
1 ATTATTTTAAATTTATCA
3151085 TGTATATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
22 20 0.59
23 14 0.41
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.51
Consensus pattern (23 bp):
ATTATTTTAAATTTATCAATAAC
Found at i:3151294 original size:2 final size:2
Alignment explanation
Indices: 3151287--3151314 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3151277 TTGTACACTC
3151287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3151315 TATTTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3157654 original size:14 final size:14
Alignment explanation
Indices: 3157635--3157665 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
3157625 ATATGGAAAA
3157635 ATCAAAATTTATAC
1 ATCAAAATTTATAC
3157649 ATCAAAATTTATAC
1 ATCAAAATTTATAC
3157663 ATC
1 ATC
3157666 TTTCAAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (14 bp):
ATCAAAATTTATAC
Found at i:3159457 original size:22 final size:22
Alignment explanation
Indices: 3159432--3159479 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
3159422 GCATCTAACA
3159432 TTTATAGAAGTAATGCTGATTT
1 TTTATAGAAGTAATGCTGATTT
3159454 TTTATAGAAGTAATGCTGATTT
1 TTTATAGAAGTAATGCTGATTT
3159476 TTTA
1 TTTA
3159480 AATTACGCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.17, T:0.48
Consensus pattern (22 bp):
TTTATAGAAGTAATGCTGATTT
Found at i:3171053 original size:61 final size:61
Alignment explanation
Indices: 3170985--3171295 Score: 275
Period size: 61 Copynumber: 5.2 Consensus size: 61
3170975 ATTTTATAGT
*
3170985 ATTATATATTATGATTTTAGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAATAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAA
* * * * * * *
3171046 ATTATATATTTTTA-TTAAATTATATTTA-ATAATAATTATTTTAA-ATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTAA-TAAATTTATATAAGAA-TA-TTTAATATTAAGAATTTTATTA-A
* *
3171105 ATTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAATAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAA
* * ** * * * *
3171166 ATTATATATTTTAATTAAAATATATTT-TATAATAATTATTTCAA-ATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTAATAAATTTATATAAGAA-TATTT-AATATTAAGAATTTTATTA-A
* * * * *
3171225 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAATAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAA
3171286 ATTATATATT
1 ATTATATATT
3171296 TTAATTAAAA
Statistics
Matches: 191, Mismatches: 41, Indels: 36
0.71 0.15 0.13
Matches are distributed among these distances:
58 10 0.05
59 60 0.31
60 37 0.19
61 73 0.38
62 11 0.06
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (61 bp):
ATTATATATTATGATTTTAATAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:3171055 original size:120 final size:120
Alignment explanation
Indices: 3170923--3171330 Score: 674
Period size: 120 Copynumber: 3.4 Consensus size: 120
3170913 GCAATATATG
* *
3170923 TAAATTATATATTTCT-ATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTAT
1 TAAATTATATATTT-TAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
*
3170987 TATATATTATGATTTTAGTAAATTTATATAAGAATATTTAATATTAAGAATTTTAT
65 TATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTAT
* *
3171043 TAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATT
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATT
* *
3171108 ATATATTATGATTTTAATAAATTCATATAAGAATATTTAATACTAAGAATTTTAT
66 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTAT
* * *
3171163 TAAATTATATATTTTAATTAAAATATATTTTATAATAATTATTTCAAATTATATTTTATAGTATC
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATT
* *
3171228 ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
66 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTAT
* *
3171283 TAAATTATATATTTTAATTAAAATATATTTAATAATAAATATGTTAAA
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAA
3171331 ATATGATTAA
Statistics
Matches: 270, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
119 1 0.00
120 269 1.00
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATT
ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTAT
Found at i:3171190 original size:16 final size:17
Alignment explanation
Indices: 3171156--3171194 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
3171146 AATACTAAGA
3171156 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
3171173 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
3171189 ATTTTA
1 ATTTTA
3171195 TAATAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 10 0.48
17 5 0.24
18 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:3171198 original size:18 final size:18
Alignment explanation
Indices: 3171156--3171190 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3171146 AATACTAAGA
*
3171156 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAAATATAT
3171173 ATTTTAATTAAAATATAT
1 ATTTTAATTAAAATATAT
3171191 TTTATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTTAATTAAAATATAT
Found at i:3171304 original size:18 final size:17
Alignment explanation
Indices: 3171276--3171310 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
3171266 ATTATTAAGA
*
3171276 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
3171293 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
3171311 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:3171324 original size:61 final size:61
Alignment explanation
Indices: 3170923--3171329 Score: 243
Period size: 61 Copynumber: 6.8 Consensus size: 61
3170913 GCAATATATG
* * * *
3170923 TAAATTATATATTTCT-ATTAAATTATATTTAATAATTATTATTTTAA-ATT-A-TATTTTA-
1 TAAATTATATATTT-TAATTAAAATATATTTAATAATAAATA-TTTAATATTAAGAATTTTAT
* * * ** * * *
3170981 TAGTATTATATATTATGATTTTAGTAAATTTATATAA-GAATATTTAATATTAAGAATTTTAT
1 TA-AATTATATATTTTAATTAAAATATATTTA-ATAATAAATATTTAATATTAAGAATTTTAT
* * * *
3171043 TAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA-ATT-A-TATTTTA-
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAAATA-TTTAATATTAAGAATTTTAT
* * * ** * * * *
3171101 TAGTATTATATATTATGATTTTAATAAATTCATATAA-GAATATTTAATACTAAGAATTTTAT
1 TA-AATTATATATTTTAATTAAAATATATTTA-ATAATAAATATTTAATATTAAGAATTTTAT
* * *
3171163 TAAATTATATATTTTAATTAAAATATATTTTATAATAATTATTTCAA-ATT-A-TATTTTA-
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAAATATTT-AATATTAAGAATTTTAT
* * * * ** * * * * * *
3171221 TAGTATCATATATTATGATTTTAGTAAATTCATATAA-GAATATTGATTATTAAGAATTTTAT
1 TA-AATTATATATTTTAATTAAAATATATTTA-ATAATAAATATTTAATATTAAGAATTTTAT
3171283 TAAATTATATATTTTAATTAAAATATATTTAATAATAAATATGTTAA
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAAATAT-TTAA
3171330 AATATGATTA
Statistics
Matches: 254, Mismatches: 70, Indels: 46
0.69 0.19 0.12
Matches are distributed among these distances:
58 18 0.07
59 92 0.36
60 29 0.11
61 100 0.39
62 15 0.06
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (61 bp):
TAAATTATATATTTTAATTAAAATATATTTAATAATAAATATTTAATATTAAGAATTTTAT
Found at i:3171542 original size:44 final size:45
Alignment explanation
Indices: 3171479--3171574 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 45
3171469 CTATTACACC
* * *
3171479 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTACGTCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCTAA
* *
3171523 TCCATTACATTCAACCAAACAATTGAATTGCTATTACGCCTCTAA
1 TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAA
3171568 TCCATTA
1 TCCATTA
3171575 TGCATCTATT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 21 0.47
ACGTcount: A:0.35, C:0.28, G:0.05, T:0.31
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAA
Found at i:3171582 original size:16 final size:16
Alignment explanation
Indices: 3171555--3171607 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
3171545 TTGAATTGCT
* *
3171555 ATTACGCCTCTAATCC
1 ATTACGCATCTATTCC
*
3171571 ATTATGCATCTATTCC
1 ATTACGCATCTATTCC
*
3171587 ATTACGCTTCTATTCC
1 ATTACGCATCTATTCC
3171603 ATTAC
1 ATTAC
3171608 AGCGAACCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.25, C:0.30, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:3180193 original size:4 final size:4
Alignment explanation
Indices: 3180168--3180213 Score: 58
Period size: 4 Copynumber: 11.8 Consensus size: 4
3180158 ATAAAATGTA
* * *
3180168 TATG TATG T-TG TAAG AACG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
3180214 ATGTGTATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
3 3 0.08
4 33 0.92
ACGTcount: A:0.28, C:0.02, G:0.24, T:0.46
Consensus pattern (4 bp):
TATG
Found at i:3181995 original size:44 final size:44
Alignment explanation
Indices: 3181945--3182108 Score: 134
Period size: 44 Copynumber: 3.6 Consensus size: 44
3181935 TATGATAAGA
* * *
3181945 TTTAATCCGAC-CCTCTGCAACTTCAAAGGTATAGGATTCATTGT
1 TTTAATCCG-CTCCACTGCAACTTCAAAGGTATAAGATTCATAGT
* * * *
3181989 TTTAATCCGCTCCACTGCAACTTCAGAGAGATAATATTTGATATGATAAGA
1 TTTAATCCGCTCCACTGCAACTTCA-A-AGGT-ATA--AGAT-TCAT-AGT
* * *
3182040 TTTAATCCGAC-CTACTGCAACTTCAGAGGTATAAGATTCATCGT
1 TTTAATCCG-CTCCACTGCAACTTCAAAGGTATAAGATTCATAGT
*
3182084 TTTAATCTGCTCCACTGCAACTTCA
1 TTTAATCCGCTCCACTGCAACTTCA
3182109 GGGAGATAAG
Statistics
Matches: 95, Mismatches: 15, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
43 2 0.02
44 44 0.46
45 4 0.04
46 6 0.06
47 3 0.03
48 3 0.03
49 6 0.06
50 3 0.03
51 23 0.24
52 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (44 bp):
TTTAATCCGCTCCACTGCAACTTCAAAGGTATAAGATTCATAGT
Found at i:3182045 original size:95 final size:94
Alignment explanation
Indices: 3181917--3182117 Score: 314
Period size: 95 Copynumber: 2.1 Consensus size: 94
3181907 TATCGCGACC
* * *
3181917 TCAGATAGATAAGTTTGATATGATAAGATTTAATCCGACCCT-CTGCAACTTCAAAGGTATAGGA
1 TCAGAGAGATAAATTTGATATGATAAGATTTAATCCGA-CCTACTGCAACTTCAAAGGTATAAGA
*
3181981 TTCATTGTTTTAATCCGCTCCACTGCAACT
65 TTCATCGTTTTAATCCGCTCCACTGCAACT
*
3182011 TCAGAGAGATAATATTTGATATGATAAGATTTAATCCGACCTACTGCAACTTCAGAGGTATAAGA
1 TCAGAGAGATAA-ATTTGATATGATAAGATTTAATCCGACCTACTGCAACTTCAAAGGTATAAGA
*
3182076 TTCATCGTTTTAATCTGCTCCACTGCAACT
65 TTCATCGTTTTAATCCGCTCCACTGCAACT
*
3182106 TCAGGGAGATAA
1 TCAGAGAGATAA
3182118 GATTAGCTTC
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
94 14 0.14
95 84 0.86
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (94 bp):
TCAGAGAGATAAATTTGATATGATAAGATTTAATCCGACCTACTGCAACTTCAAAGGTATAAGAT
TCATCGTTTTAATCCGCTCCACTGCAACT
Found at i:3182463 original size:44 final size:43
Alignment explanation
Indices: 3182415--3182562 Score: 104
Period size: 44 Copynumber: 3.4 Consensus size: 43
3182405 TGCTCCTCTA
*
3182415 CTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTCTGTTG
1 CTGCTCAGGGAGATAAGATCTACAATCTTCGACCTACTC-GTTG
* * ** * * ** *
3182459 CTGCTCAAGGAGATAAG-GCT--GGTGCTTTCGATCTGCTCCACTA
1 CTGCTCAGGGAGATAAGATCTACAAT-C-TTCGACCTACT-CGTTG
* * * *
3182502 CTGCTTAGGGGGATAAGATCTACAATCTTTGACCTATTACGTTG
1 CTGCTCAGGGAGATAAGATCTACAATCTTCGACCTACT-CGTTG
3182546 CTGCTCAGGGAGATAAG
1 CTGCTCAGGGAGATAAG
3182563 GCTAGTTTTT
Statistics
Matches: 72, Mismatches: 26, Indels: 12
0.65 0.24 0.11
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 26 0.36
44 42 0.58
45 1 0.01
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (43 bp):
CTGCTCAGGGAGATAAGATCTACAATCTTCGACCTACTCGTTG
Found at i:3182471 original size:87 final size:86
Alignment explanation
Indices: 3182403--3182565 Score: 247
Period size: 87 Copynumber: 1.9 Consensus size: 86
3182393 GCTTCTTCTG
*
3182403 TCTGCTCCTCTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACT-CTGTTGCTGCTCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTAC-GTTGCTGCTCAA
3182467 GGAGATAAGGCTGGTGCTTTCGA
65 GGAGAT-AGGCTGGTGCTTTCGA
* * * *
3182490 TCTGCTCCACTACTGCTTAGGGGGATAAGATCTACAATCTTTGACCTATTACGTTGCTGCTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTACGTTGCTGCTCAAG
3182555 GAGATAAGGCT
66 GAGAT-AGGCT
3182566 AGTTTTTGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
87 69 0.99
88 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (86 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTACGTTGCTGCTCAAG
GAGATAGGCTGGTGCTTTCGA
Found at i:3182689 original size:89 final size:89
Alignment explanation
Indices: 3182573--3182788 Score: 324
Period size: 89 Copynumber: 2.4 Consensus size: 89
3182563 GCTAGTTTTT
* * * *
3182573 GATCTGCTTCACTGCCAGTACAAGAAGACAAGATCTGCTGCTTTTAGTCTGTTCCACTACAAACT
1 GATCTGCTTCGCTGCCGGTACAGGAAGACAAGATCTGCTGCTTTTAGTCTGCTCCACTACAAACT
* *
3182638 CAGGGAGGTAAAGCTTGTGTCTTC
66 CAAGGAGGCAAAGCTTGTGTCTTC
* * * *
3182662 GATCTGCTTCGCTACCGGTACAGGAAGACAAGATCTACTGCTTTTAGTCTGCTCCGCTGCAAACT
1 GATCTGCTTCGCTGCCGGTACAGGAAGACAAGATCTGCTGCTTTTAGTCTGCTCCACTACAAACT
* *
3182727 TAAGGAGGCAAGGCTTGTGTCTTC
66 CAAGGAGGCAAAGCTTGTGTCTTC
3182751 GATCTGCTTCGCTGCCGGTACAGGAAGACAAGATCTGC
1 GATCTGCTTCGCTGCCGGTACAGGAAGACAAGATCTGC
3182789 AATCTTCAAC
Statistics
Matches: 113, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 113 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (89 bp):
GATCTGCTTCGCTGCCGGTACAGGAAGACAAGATCTGCTGCTTTTAGTCTGCTCCACTACAAACT
CAAGGAGGCAAAGCTTGTGTCTTC
Found at i:3183213 original size:24 final size:24
Alignment explanation
Indices: 3183158--3183215 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
3183148 GGATTGCCCC
*
3183158 CCACTGTAATCTTTAAAGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
** *
3183182 CCGTTGTAATCTTCAAGGTT-AAGT
1 CCACTGTAATCTTCAAAGTTCAA-T
3183206 CCACTGTAAT
1 CCACTGTAAT
3183216 TTTGGGACAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (24 bp):
CCACTGTAATCTTCAAAGTTCAAT
Found at i:3184157 original size:14 final size:14
Alignment explanation
Indices: 3184134--3184200 Score: 50
Period size: 13 Copynumber: 4.9 Consensus size: 14
3184124 TTGGCCTCTC
*
3184134 CTTTCATTTTTTTT
1 CTTTCTTTTTTTTT
*
3184148 CTTTC-TTTTTCTT
1 CTTTCTTTTTTTTT
*
3184161 CTTTTCTTTATCTTTT
1 C-TTTCTTT-TTTTTT
* *
3184177 C-TTCTTATTCTTT
1 CTTTCTTTTTTTTT
3184190 CTTT-TTTTTTT
1 CTTTCTTTTTTT
3184201 AAAAATATTC
Statistics
Matches: 41, Mismatches: 8, Indels: 9
0.71 0.14 0.16
Matches are distributed among these distances:
13 18 0.44
14 16 0.39
15 2 0.05
16 5 0.12
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (14 bp):
CTTTCTTTTTTTTT
Found at i:3184176 original size:19 final size:18
Alignment explanation
Indices: 3184144--3184195 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
3184134 CTTTCATTTT
*
3184144 TTTTCTTTCTTTTTCTTC
1 TTTTCTTTATTTTTCTTC
3184162 TTTTCTTTATCTTTTCTTC
1 TTTTCTTTAT-TTTTCTTC
*
3184181 TTATTCTTTCTTTTT
1 TT-TTCTTTATTTTT
3184196 TTTTTAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 9 0.30
19 14 0.47
20 7 0.23
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTCTTTATTTTTCTTC
Found at i:3197694 original size:10 final size:11
Alignment explanation
Indices: 3197670--3197694 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3197660 TTGACTTATC
3197670 TTTTCAAACAT
1 TTTTCAAACAT
3197681 TTTTCAAACAT
1 TTTTCAAACAT
3197692 TTT
1 TTT
3197695 GAGGTCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTTCAAACAT
Found at i:3203158 original size:23 final size:22
Alignment explanation
Indices: 3203111--3203154 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
3203101 GAATTTGACA
* *
3203111 AATTTTTTTATATTAGAGTTTG
1 AATTTTTTTATATCAGACTTTG
3203133 AATTTTTTTA-AGTCAGACTTTG
1 AATTTTTTTATA-TCAGACTTTG
3203155 GAATAGAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.27, C:0.05, G:0.14, T:0.55
Consensus pattern (22 bp):
AATTTTTTTATATCAGACTTTG
Found at i:3205160 original size:18 final size:17
Alignment explanation
Indices: 3205139--3205195 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 17
3205129 TGTAATAAGT
3205139 ATAATAATACCAATAATA
1 ATAATAATA-CAATAATA
* * *
3205157 ATAATAGTAGCAGTACTA
1 ATAATAATA-CAATAATA
3205175 ATAATAATA-AATAA-A
1 ATAATAATACAATAATA
3205190 ATAATA
1 ATAATA
3205196 TTAAACTATT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 7 0.22
16 3 0.09
18 22 0.69
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (17 bp):
ATAATAATACAATAATA
Found at i:3205598 original size:36 final size:36
Alignment explanation
Indices: 3205558--3205633 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
3205548 AAACGACGCT
*
3205558 GTTTTGGCTATTGGTGCTCAAGCCCAAAACAATGCC
1 GTTTTGACTATTGGTGCTCAAGCCCAAAACAATGCC
* * *
3205594 GTTTTGACTATTGGTTCTCAAGCCCAAAACGATGTC
1 GTTTTGACTATTGGTGCTCAAGCCCAAAACAATGCC
3205630 GTTT
1 GTTT
3205634 CATGGGCCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (36 bp):
GTTTTGACTATTGGTGCTCAAGCCCAAAACAATGCC
Found at i:3208923 original size:22 final size:23
Alignment explanation
Indices: 3208898--3208941 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
3208888 CAACTATTTT
*
3208898 CAAAAAAGAAAA-GAAGAAAGAA
1 CAAAAAAGAAAACAAAGAAAGAA
3208920 CAAAAAAGAAAACAAAGAAAGA
1 CAAAAAAGAAAACAAAGAAAGA
3208942 GGGTGAGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.77, C:0.07, G:0.16, T:0.00
Consensus pattern (23 bp):
CAAAAAAGAAAACAAAGAAAGAA
Found at i:3210279 original size:4 final size:4
Alignment explanation
Indices: 3210270--3210302 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
3210260 GAAGACAAAG
3210270 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
3210303 TAAAGGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:3210419 original size:12 final size:12
Alignment explanation
Indices: 3210404--3210429 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3210394 ATAAATAGTA
3210404 ATAATAATAAAT
1 ATAATAATAAAT
3210416 ATAATAATAAAT
1 ATAATAATAAAT
3210428 AT
1 AT
3210430 GGTACAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATAATAAAT
Found at i:3212379 original size:143 final size:143
Alignment explanation
Indices: 3211950--3212747 Score: 1080
Period size: 143 Copynumber: 5.6 Consensus size: 143
3211940 TAATTTCAAC
* * * * *
3211950 CTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTCCACTGCGACTTCAGG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTCAGG
* * *
3212015 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCAACTACAACGCTAGAGAAATAAGATC
66 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
*
3212080 CACTGTCTTCAGT
131 CGCTGTCTTCAGT
* * * * * * *
3212093 TTGCTCCGTTGCAACTTTAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCA-A
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTCAGG
* *
3212157 AAGATAAGATCCACCATAATTTGTAGCTTTAATCTGTTCTACTGCAACGCTAGAGAAATAAGATT
66 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
* * *
3212222 TGTTGTATTCAGT
131 CGCTGTCTTCAGT
* * *
3212235 CTGCTCCGCTGCAACTTTAGGGAGATAAGGCTAGTGGCTTCAATATGTTCCACTGCAACTTCAGG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTCAGG
* * * *
3212300 AAGATAAGGTTCGCTATAATTTATAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
66 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
* *
3212365 CCCTGTCTTTAGT
131 CGCTGTCTTCAGT
* * * ** *
3212378 CTGCTCCGCTGTAACTTCAGGGGGATAAGGTTGGTGGCTTCAATCCATTCCACTACAACTTCAGG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTCAGG
* * *
3212443 AAGATAAGATCTGCCATAATTTGTAGCTTTAATTTGTTCCACTGCAACGCTAGGGAAATAAGATT
66 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
3212508 CGCTGTCTTCAGT
131 CGCTGTCTTCAGT
* * * *
3212521 CTGCTCCGTTGTAACTTCAGGGGGATAAGGCTGGTGGCTTCAATCTGCTT-CACTGCAACTTTA-
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG-TTCCACTGCAACTTCAG
* * * * *
3212584 GAAAATAAGATCCACCATAATTTGTAGCTTTAATCTGTTACACTGCAACGCCAGGGAAATAAGAT
65 GAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGAT
* *
3212649 TCGCTATCTTTAGT
130 TCGCTGTCTTCAGT
* * * *
3212663 CTGCTCCGCTGCAACTTCAGGGAGATAAGGTTGATTGCTTCAATTTGTTCCACTGCAACTTCAGG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTCAGG
3212728 AAGATAAGATCCGCCATAAT
66 AAGATAAGATCCGCCATAAT
3212748 GACTTTAATC
Statistics
Matches: 574, Mismatches: 77, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
141 2 0.00
142 251 0.44
143 319 0.56
144 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTCAGG
AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
CGCTGTCTTCAGT
Found at i:3212614 original size:285 final size:286
Alignment explanation
Indices: 3211950--3212747 Score: 1109
Period size: 285 Copynumber: 2.8 Consensus size: 286
3211940 TAATTTCAAC
* * * *
3211950 CTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTCCACTGCGACTTCAGG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTTCACTGCAACTTCAGG
* *
3212015 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCAACTACAACGCTAGAGAAATAAGA-T
66 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
* * * * * * * *
3212079 CCACTGTCTTCAGTTTGCTCCGTTGCAACTTTAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCC
131 CC-CTGTCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGTTCC
* * *
3212144 ACTGCAACTTCA-AAAGATAAGATCCACCATAATTTGTAGCTTTAATCTGTTCTACTGCAACGCT
195 ACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCT
* *
3212208 AGAGAAATAAGATTTGTTGTATTCAGT
260 AGAGAAATAAGATTCGCTGTATTCAGT
* *
3212235 CTGCTCCGCTGCAACTTTAGGGAGATAAGGCTAGTGGCTTCAATATG-TTCCACTGCAACTTCAG
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTT-CACTGCAACTTCAG
* * * *
3212299 GAAGATAAGGTTCGCTATAATTTATAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGAT
65 GAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGAT
* * **
3212364 TCCCTGTCTTTAGTCTGCTCCGCTGTAACTTCAGGGGGATAAGGTTGGTGGCTTCAATCCATTCC
130 TCCCTGTCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGTTCC
* * *
3212429 ACTACAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATTTGTTCCACTGCAACGCT
195 ACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCT
* *
3212494 AGGGAAATAAGATTCGCTGTCTTCAGT
260 AGAGAAATAAGATTCGCTGTATTCAGT
* * * * *
3212521 CTGCTCCGTTGTAACTTCAGGGGGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTTA-G
1 CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTTCACTGCAACTTCAGG
* * * * *
3212585 AAAATAAGATCCACCATAATTTGTAGCTTTAATCTGTTACACTGCAACGCCAGGGAAATAAGATT
66 AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
* * * * *
3212650 CGCTATCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGTTGATTGCTTCAATTTGTTCCA
131 CCCTGTCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGTTCCA
3212715 CTGCAACTTCAGGAAGATAAGATCCGCCATAAT
196 CTGCAACTTCAGGAAGATAAGATCCGCCATAAT
3212748 GACTTTAATC
Statistics
Matches: 448, Mismatches: 61, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
284 1 0.00
285 319 0.71
286 126 0.28
287 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (286 bp):
CTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTTCACTGCAACTTCAGG
AAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAATAAGATT
CCCTGTCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGTTCCA
CTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTA
GAGAAATAAGATTCGCTGTATTCAGT
Done.