genome.fa.s16.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  105  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32655275--32655316	18	2.3	18	87	0	57	11	2	7	78	1.04
32660734--32660834	25	4.0	25	75	10	98	29	28	19	21	1.98
32668066--32668135	25	2.8	25	80	6	88	28	27	22	21	1.99
32670710--32670745	16	2.2	17	90	5	56	30	0	2	66	1.06
32670676--32670843	83	2.0	83	97	0	318	38	6	11	43	1.67
32670793--32670828	16	2.2	17	90	5	56	27	0	5	66	1.13
32673988--32674203	43	5.0	43	83	5	269	29	31	16	22	1.96
32680162--32680231	9	8.0	9	79	9	74	34	0	18	47	1.49
32680166--32680231	34	1.9	34	81	6	80	33	0	18	48	1.48
32680313--32680345	13	2.5	13	95	0	57	33	9	0	57	1.30
32681553--32681605	24	2.2	24	96	0	97	49	3	3	43	1.38
32682033--32682068	17	2.1	17	94	0	63	38	11	38	11	1.76
32682309--32682376	33	2.1	33	94	0	118	35	27	4	32	1.77
32682998--32683037	15	2.8	14	85	7	53	37	2	35	25	1.69
32683012--32683068	23	2.4	22	80	13	60	36	1	42	19	1.62
32683031--32683084	23	2.3	23	84	6	65	38	1	38	20	1.63
32683216--32683550	117	2.9	114	79	5	345	32	19	15	32	1.93
32683203--32683596	116	3.4	114	78	3	355	32	19	15	32	1.93
32684580--32684736	41	3.8	40	85	3	215	27	24	19	28	1.99
32686509--32686559	25	2.0	26	84	3	68	39	11	9	39	1.75
32686758--32686853	17	5.6	17	68	24	69	52	4	2	41	1.32
32686758--32686861	20	5.6	18	72	18	72	52	3	1	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32686845--32686872	8	3.5	8	100	0	56	64	0	0	35	0.94
32696942--32697051	42	2.6	42	88	0	157	18	32	26	22	1.97
32697037--32697075	12	3.2	12	92	0	60	12	25	35	25	1.92
32702504--32702889	51	7.6	50	78	4	371	29	26	15	29	1.96
32702504--32702889	102	3.8	102	90	1	569	29	26	15	29	1.96
32703358--32703420	28	2.1	28	82	8	72	30	20	6	42	1.77
32707698--32707784	39	2.2	39	85	0	111	34	18	29	17	1.94
32707712--32707786	39	1.9	39	91	0	123	33	18	30	17	1.94
32713605--32713694	45	2.0	45	80	6	101	41	7	20	31	1.80
32713696--32713739	6	7.2	6	92	2	61	61	0	22	15	1.34
32715747--32715818	25	2.8	26	77	10	78	16	29	18	36	1.93
32715884--32715941	24	2.4	24	85	0	71	18	27	25	27	1.98
32723663--32723743	25	3.2	25	76	0	81	18	30	17	33	1.94
32723736--32723805	24	2.8	24	72	14	61	18	25	20	35	1.95
32747025--32747107	25	3.3	25	75	6	87	30	22	21	25	1.99
32748245--32748295	15	3.4	15	70	20	52	27	23	33	15	1.95
32748238--32748306	30	2.3	30	100	0	138	24	23	33	18	1.97
32758633--32758666	17	2.0	17	88	0	50	29	26	32	11	1.92
32772685--32772877	90	2.1	90	96	0	350	30	14	6	48	1.68
32774539--32774582	16	2.8	16	85	0	61	59	4	6	29	1.44
32774691--32774812	60	2.0	60	88	3	183	54	13	0	31	1.45
32774805--32775265	19	22.3	19	68	25	171	55	14	0	29	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32774805--32774908	23	4.9	22	84	13	139	52	17	0	29	1.44
32774806--32774915	42	2.6	42	97	0	211	52	17	0	30	1.45
32774861--32775038	27	6.5	27	75	17	154	57	13	0	29	1.37
32774916--32775121	61	3.4	61	79	9	265	58	11	0	29	1.33
32774991--32775046	8	6.6	8	81	18	69	60	12	0	26	1.32
32774957--32775161	40	5.0	41	70	16	131	58	11	0	30	1.34
32774991--32775060	35	2.0	35	97	0	131	58	12	0	28	1.35
32774901--32775224	123	2.8	118	83	14	448	57	13	0	29	1.37
32775095--32775261	21	8.2	21	73	15	129	56	13	0	29	1.42
32775004--32775262	101	2.6	101	90	3	402	56	13	0	29	1.40
32775270--32775342	27	2.7	27	89	0	110	17	28	21	31	1.97
32776116--32776164	19	2.7	18	84	6	55	55	2	0	42	1.11
32781187--32781236	25	2.0	25	100	0	100	20	24	40	16	1.91
32782376--32782430	28	2.0	28	92	0	92	36	16	12	34	1.87
32784575--32784639	3	21.7	3	96	0	121	33	1	0	64	1.03
32785129--32785525	109	3.6	109	87	1	587	29	16	20	34	1.94
32788919--32788971	16	3.2	16	79	12	54	79	5	7	7	1.06
32788905--32789054	61	2.4	64	81	7	175	71	4	12	11	1.29
32789923--32789962	13	3.0	13	82	7	53	62	0	20	17	1.33
32789926--32789965	20	2.0	21	90	5	64	65	0	17	17	1.28
32789924--32789966	7	6.3	7	83	5	61	67	0	16	16	1.24
32791259--32792418	44	26.7	43	69	10	369	31	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32791299--32791468	90	1.9	87	83	3	214	28	19	23	28	1.98
32791391--32791549	87	1.8	87	82	2	203	32	19	22	25	1.98
32791208--32792426	218	5.6	218	81	6	1344	31	18	21	28	1.97
32791517--32792110	87	6.9	85	73	10	386	30	19	21	28	1.97
32791604--32791984	129	2.9	128	82	7	437	30	18	21	29	1.97
32791695--32792552	303	2.8	303	85	4	1053	30	18	21	29	1.97
32791390--32792150	347	2.2	347	84	5	1016	30	19	21	28	1.98
32791952--32792239	129	2.2	128	80	3	328	30	20	21	27	1.98
32792327--32792523	98	2.0	98	87	3	281	32	16	20	29	1.95
32793980--32794011	3	10.7	3	100	0	64	34	0	0	65	0.93
32794501--32794922	109	3.8	110	85	3	573	30	16	19	32	1.95
32795899--32795956	29	2.0	29	100	0	116	34	17	10	37	1.84
32798769--32798811	20	2.2	20	83	8	52	9	20	4	65	1.40
32799146--32799174	7	4.1	7	100	0	58	0	72	0	27	0.85
32804246--32804389	72	2.0	72	100	0	288	52	8	13	25	1.68
32821968--32822014	22	2.1	22	88	0	67	21	17	8	53	1.70
32823207--32823246	21	2.0	20	85	5	53	25	5	7	62	1.42
32834828--32834867	20	2.0	20	90	0	62	27	10	12	50	1.72
32834813--32834879	34	1.9	35	90	3	109	31	8	13	46	1.74
32834807--32834883	14	5.0	15	71	20	52	33	9	14	42	1.77
32837421--32837457	3	12.3	3	100	0	74	32	0	0	67	0.91
32849415--32849462	20	2.4	19	76	10	51	31	22	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32857081--32857110	11	2.6	11	94	5	51	56	6	0	36	1.26
32860550--32860580	15	2.0	16	93	6	55	70	0	0	29	0.87
32868108--32868162	16	3.4	16	92	0	92	38	7	25	29	1.83
32868318--32868456	58	2.4	58	84	2	190	53	2	0	42	1.20
32870178--32870222	23	2.0	23	82	8	56	40	26	0	33	1.57
32870200--32870365	23	7.3	23	67	12	65	41	23	3	31	1.72
32870171--32870434	138	1.9	138	94	1	467	41	22	3	32	1.72
32873064--32873125	28	2.2	28	85	0	79	27	24	12	35	1.92
32873276--32873417	51	2.8	51	81	0	140	26	26	11	35	1.91
32874629--32874653	2	12.5	2	100	0	50	48	52	0	0	1.00
32877578--32877646	21	3.3	21	79	0	75	17	17	18	46	1.85
32882651--32882771	62	2.0	62	98	0	233	33	18	19	28	1.96
32883290--32883344	28	2.0	28	96	0	101	20	20	12	47	1.82
32888823--32888882	28	2.1	28	82	11	70	60	0	6	33	1.23
32900284--32900638	33	10.5	33	67	23	145	20	20	27	30	1.98
32900279--32900611	102	3.3	102	94	0	558	20	21	27	30	1.98
32900384--32900465	27	2.7	31	87	10	109	15	21	30	31	1.95
32904163--32904209	25	1.9	25	83	12	62	19	12	14	53	1.73
32904123--32904280	79	2.0	79	94	0	280	24	11	11	53	1.69
32906035--32906083	21	2.3	21	89	0	71	20	30	16	32	1.94
32906902--32906963	32	1.9	33	90	3	99	46	24	1	27	1.62
32906902--32906973	32	2.2	32	80	9	92	48	23	1	26	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32912530--32912555	11	2.4	11	100	0	52	53	0	0	46	1.00
32917443--32917728	67	4.3	66	78	6	254	33	17	26	23	1.96
32917493--32917736	134	1.8	134	80	3	294	31	17	26	24	1.97
32929356--32929385	3	10.0	3	92	0	51	36	0	0	63	0.95
32929353--32929385	12	2.8	12	95	0	57	39	0	0	60	0.97
32934740--32934769	14	2.1	14	93	0	51	36	16	20	26	1.93
32939292--32939383	46	2.0	46	100	0	184	32	8	15	43	1.77
32945483--32945549	20	3.3	20	93	0	107	49	0	11	38	1.40
32968008--32968038	16	1.9	16	93	0	53	19	38	0	41	1.51
32975003--32975103	51	2.0	52	90	2	159	22	17	24	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170