Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 105 of 170
Found at i:32655302 original size:18 final size:18
Alignment explanation
Indices: 32655275--32655316 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32655265 ATTGTCTGTT
* *
32655275 TTTTTCTTTTTGGTTTTA
1 TTTTTATTTTAGGTTTTA
*
32655293 TTTTTATTTTAGTTTTTA
1 TTTTTATTTTAGGTTTTA
32655311 TTTTTA
1 TTTTTA
32655317 AAAGTTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (18 bp):
TTTTTATTTTAGGTTTTA
Found at i:32660762 original size:25 final size:25
Alignment explanation
Indices: 32660734--32660834 Score: 98
Period size: 25 Copynumber: 4.0 Consensus size: 25
32660724 TAGCTATGTT
* *
32660734 CCGACCCACAGCTTGTATGAGCATA
1 CCGATCCACAGCTCGTATGAGCATA
* *
32660759 CCGATTCATAGCTCGTGA-GAGCATA
1 CCGATCCACAGCTCGT-ATGAGCATA
* *
32660784 CCGATCTACAACTCG-AGTGAGCATA
1 CCGATCCACAGCTCGTA-TGAGCATA
* *
32660809 CCAATTCACAGCTCGTATGAGCATA
1 CCGATCCACAGCTCGTATGAGCATA
32660834 C
1 C
32660835 ATGTACATGA
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
23 1 0.02
25 57 0.95
26 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (25 bp):
CCGATCCACAGCTCGTATGAGCATA
Found at i:32668095 original size:25 final size:25
Alignment explanation
Indices: 32668066--32668135 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
32668056 CGTTTCGACC
32668066 CACAGCTCGTGTGAGCATACCGA-T
1 CACAGCTCGTGTGAGCATACCGATT
* *
32668090 CTACAGCTCGAGTGAGCAAACCGATT
1 C-ACAGCTCGTGTGAGCATACCGATT
* *
32668116 CACAGCTTGTATGAGCATAC
1 CACAGCTCGTGTGAGCATAC
32668136 ATGTACATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 1 0.03
25 35 0.92
26 2 0.05
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (25 bp):
CACAGCTCGTGTGAGCATACCGATT
Found at i:32670734 original size:16 final size:17
Alignment explanation
Indices: 32670710--32670745 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
32670700 AACCATAATT
*
32670710 TTTTTAATTT-ATTTAA
1 TTTTGAATTTAATTTAA
32670726 TTTTGAATTTAATTTAA
1 TTTTGAATTTAATTTAA
32670743 TTT
1 TTT
32670746 ATGTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTGAATTTAATTTAA
Found at i:32670779 original size:83 final size:83
Alignment explanation
Indices: 32670676--32670843 Score: 318
Period size: 83 Copynumber: 2.0 Consensus size: 83
32670666 TAACGACATT
*
32670676 AAACAAAAGCGTTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
1 AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
32670741 AATTTATGTTAAAAATAA
66 AATTTATGTTAAAAATAA
*
32670759 AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTGATTT
1 AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
32670824 AATTTATGTTAAAAATAA
66 AATTTATGTTAAAAATAA
32670842 AA
1 AA
32670844 GAATAATAAT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (83 bp):
AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
AATTTATGTTAAAAATAA
Found at i:32670817 original size:16 final size:17
Alignment explanation
Indices: 32670793--32670828 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
32670783 AACCATAATT
*
32670793 TTTTTAATTT-ATTTAA
1 TTTTGAATTTGATTTAA
32670809 TTTTGAATTTGATTTAA
1 TTTTGAATTTGATTTAA
32670826 TTT
1 TTT
32670829 ATGTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTGAATTTGATTTAA
Found at i:32674217 original size:43 final size:43
Alignment explanation
Indices: 32673988--32674203 Score: 269
Period size: 43 Copynumber: 5.0 Consensus size: 43
32673978 ATGCCGTTAT
* *
32673988 AGAACATGACCTTTAGC-GACACCTTT-CCCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCAG-C-GCTTTCCCCACAAACGCTGCTAA
* *
32674031 AGAAC-TGACCTTTAGCGGCGCTTTCCCCACAAACGCGGCTAA
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
*
32674073 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACG-TCGCTAT
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCT-GCTAA
* * ** **
32674116 AGAACATGACCTTTAACGGATCTTTTTCCACAAACGCTGCTAA
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
*
32674159 AGATCATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
32674202 AG
1 AG
32674204 GTCATGTTCT
Statistics
Matches: 149, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
41 4 0.03
42 33 0.22
43 111 0.74
44 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (43 bp):
AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
Found at i:32680176 original size:9 final size:9
Alignment explanation
Indices: 32680162--32680231 Score: 74
Period size: 9 Copynumber: 8.0 Consensus size: 9
32680152 ATATATTACA
32680162 TAAGTTATG
1 TAAGTTATG
32680171 TAAGTTATG
1 TAAGTTATG
* * *
32680180 ATATGATATA
1 -TAAGTTATG
*
32680190 T-ATTTATG
1 TAAGTTATG
32680198 T-A-TTATG
1 TAAGTTATG
32680205 TAAGTTATG
1 TAAGTTATG
32680214 TAAGTTATG
1 TAAGTTATG
32680223 TAAGTTATG
1 TAAGTTATG
32680232 ATCCAAAGTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 6 0.12
8 6 0.12
9 33 0.65
10 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:32680231 original size:34 final size:34
Alignment explanation
Indices: 32680166--32680231 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
32680156 ATTACATAAG
* *
32680166 TTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGATAAGATATATAGTTATGTA
* *
32680200 TTATGTAAGTTATG-TAAGTTATGTAAGTTATG
1 TTATGTAAGTTATGATAAGATATAT-AGTTATG
32680232 ATCCAAAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 7 0.26
34 20 0.74
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (34 bp):
TTATGTAAGTTATGATAAGATATATAGTTATGTA
Found at i:32680335 original size:13 final size:13
Alignment explanation
Indices: 32680313--32680345 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32680303 AAGTTATGAT
*
32680313 TTTTATCTTTAAA
1 TTTTAACTTTAAA
32680326 TTTTAACTTTAAA
1 TTTTAACTTTAAA
32680339 TTTTAAC
1 TTTTAAC
32680346 CCTTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTAACTTTAAA
Found at i:32681585 original size:24 final size:24
Alignment explanation
Indices: 32681553--32681605 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
32681543 AGTATTTTAT
32681553 AATATAATATTAATTTTAGATACA
1 AATATAATATTAATTTTAGATACA
*
32681577 AATATAATATTAATTTTAGTTACA
1 AATATAATATTAATTTTAGATACA
32681601 AATAT
1 AATAT
32681606 TATACAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (24 bp):
AATATAATATTAATTTTAGATACA
Found at i:32682053 original size:17 final size:17
Alignment explanation
Indices: 32682033--32682068 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
32682023 AAAGTTCACT
32682033 AGGAAGTAAAGGCTGCA
1 AGGAAGTAAAGGCTGCA
*
32682050 AGGAAGTAGAGGCTGCA
1 AGGAAGTAAAGGCTGCA
32682067 AG
1 AG
32682069 TTCCTGGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.39, T:0.11
Consensus pattern (17 bp):
AGGAAGTAAAGGCTGCA
Found at i:32682356 original size:33 final size:33
Alignment explanation
Indices: 32682309--32682376 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
32682299 ATATACATAT
*
32682309 ATTCATACCTAACACTAATCTCATTTAACTCGA
1 ATTCATACCGAACACTAATCTCATTTAACTCGA
*
32682342 ATTCATACCGAACACTCATCTCATTTAACTCGA
1 ATTCATACCGAACACTAATCTCATTTAACTCGA
32682375 AT
1 AT
32682377 AACATAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.32
Consensus pattern (33 bp):
ATTCATACCGAACACTAATCTCATTTAACTCGA
Found at i:32683030 original size:15 final size:14
Alignment explanation
Indices: 32682998--32683037 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
32682988 AATTGGGAAA
*
32682998 TTGGGGAAAATAAT
1 TTGGGGAAAATAAC
32683012 TTGGGGAAGAATAAC
1 TTGGGGAA-AATAAC
*
32683027 TTGGGGGAAAT
1 TTGGGGAAAAT
32683038 TGGGGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.38, C:0.03, G:0.35, T:0.25
Consensus pattern (14 bp):
TTGGGGAAAATAAC
Found at i:32683041 original size:25 final size:22
Alignment explanation
Indices: 32683012--32683068 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 22
32683002 GGAAAATAAT
*
32683012 TTGGGGAAGAATAACTTGGGGGAAA
1 TTGGGGAA-AAGAACTT--GGGAAA
*
32683037 TTGGGGGAAAAGAAGTTGGGAAA
1 TT-GGGGAAAAGAACTTGGGAAA
32683060 TTGGGGAAA
1 TTGGGGAAA
32683069 TGAAATCGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 7 0.24
23 8 0.28
25 8 0.28
26 6 0.21
ACGTcount: A:0.37, C:0.02, G:0.42, T:0.19
Consensus pattern (22 bp):
TTGGGGAAAAGAACTTGGGAAA
Found at i:32683081 original size:23 final size:23
Alignment explanation
Indices: 32683031--32683084 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
32683021 AATAACTTGG
* *
32683031 GGGAAATTGGGGGAAAAGAAGTT
1 GGGAAATTGGGGGAAAAGAAATC
*
32683054 GGGAAATT-GGGGAAATGAAATC
1 GGGAAATTGGGGGAAAAGAAATC
32683076 GTGGAAATT
1 G-GGAAATT
32683085 TGACTTGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (23 bp):
GGGAAATTGGGGGAAAAGAAATC
Found at i:32683549 original size:116 final size:114
Alignment explanation
Indices: 32683216--32683550 Score: 345
Period size: 117 Copynumber: 2.9 Consensus size: 114
32683206 AATGACAACG
* * **
32683216 TTTTGCAAACTCTTAAAGCATATTTACGGTGTTTTTTGTGAAAA-CCACTAACTTATATCCTTTT
1 TTTTGCAAACTCTTAAACCATATTTGCGGTGTTTTTTGTGAAAAGCCACTAACGCATATCCTTTT
* * * * * *
32683280 GCAGCCTTTTAGTAAAAATGCCATTAAAAA-AGCAGATAAAAATGTTAAAT
66 GCGGCGTTTTAGTAAAAACGCCACTAAAAACA-CAGCTAAAAACG-TAAAT
* *
32683330 TTTTGCAAACTCTTAAACCATATTCGCGGTGTTTTTTTATGAAAATGCCACTAACGCATATCCTT
1 TTTTGCAAACTCTTAAACCATATTTGCGGTG-TTTTTTGTGAAAA-GCCACTAACGCATATCCTT
* * * * * * * * *
32683395 TTGTGGTGTTTTAGTGAAAGCGCCACCAAAAGCGCAGCTGAAAACG-ACATT
64 TTGCGGCGTTTTAGTAAAAACGCCACTAAAAACACAGCTAAAAACGTA-AAT
* * *
32683446 ATTTTGCAAACTCTTAATA-CATATTTGCGGCGTTTTTGGTGAAAACGCCACTAACGCATAACCT
1 -TTTTGCAAACTCTTAA-ACCATATTTGCGGTGTTTTTTGTGAAAA-GCCACTAACGCATATCCT
*
32683510 TTTGCGGCGTTTTAGTCAAAACGCCACTAAAAACACAGCTA
63 TTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACACAGCTA
32683551 CAAATGACAA
Statistics
Matches: 179, Mismatches: 35, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
114 28 0.16
115 13 0.07
116 63 0.35
117 74 0.41
118 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (114 bp):
TTTTGCAAACTCTTAAACCATATTTGCGGTGTTTTTTGTGAAAAGCCACTAACGCATATCCTTTT
GCGGCGTTTTAGTAAAAACGCCACTAAAAACACAGCTAAAAACGTAAAT
Found at i:32683567 original size:116 final size:114
Alignment explanation
Indices: 32683203--32683596 Score: 355
Period size: 116 Copynumber: 3.4 Consensus size: 114
32683193 AAATGTAGCT
* ** *
32683203 TAAAATGACAACGTTTTGCAAACTCTTAAAGCATATTTACGGTGTTTTTTGTGAAAA-CCACTAA
1 TAAAATGACAACGTTTTGCAAACTCTTAAACCATATTCGCGGCGTTTTTTGTGAAAAGCCACTAA
** * * * * *
32683267 CTTATATCCTTTTGCAGCCTTTTAGTAAAAATGCCATTAAAAA-AGCAGA
66 CGCATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACA-CAGC
** ** * *
32683316 TAAAAATGTTAAATTTTTGCAAACTCTTAAACCATATTCGCGGTGTTTTTTTATGAAAATGCCAC
1 T-AAAATGACAACGTTTTGCAAACTCTTAAACCATATTCGCGGCG-TTTTTTGTGAAAA-GCCAC
* * * * * * *
32683381 TAACGCATATCCTTTTGTGGTGTTTTAGTGAAAGCGCCACCAAAAGCGCAGC
63 TAACGCATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACACAGC
* *** * *
32683433 TGAAAACGACATTATTTTGCAAACTCTTAATA-CATATTTGCGGCGTTTTTGGTGAAAACGCCAC
1 T-AAAATGACAACGTTTTGCAAACTCTTAA-ACCATATTCGCGGCGTTTTTTGTGAAAA-GCCAC
* *
32683497 TAACGCATAACCTTTTGCGGCGTTTTAGTCAAAACGCCACTAAAAACACAGC
63 TAACGCATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACACAGC
** * *
32683549 TACAAATGACAACGTTTTGCATTCTTTTAATA-CATATTCGCCGCGTTT
1 TA-AAATGACAACGTTTTGCAAACTCTTAA-ACCATATTCGCGGCGTTT
32683597 GGACCAAAAA
Statistics
Matches: 223, Mismatches: 51, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
113 1 0.00
114 36 0.16
115 13 0.06
116 97 0.43
117 75 0.34
118 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (114 bp):
TAAAATGACAACGTTTTGCAAACTCTTAAACCATATTCGCGGCGTTTTTTGTGAAAAGCCACTAA
CGCATATCCTTTTGCGGCGTTTTAGTAAAAACGCCACTAAAAACACAGC
Found at i:32684642 original size:41 final size:40
Alignment explanation
Indices: 32684580--32684736 Score: 215
Period size: 41 Copynumber: 3.9 Consensus size: 40
32684570 AATCATATTC
*
32684580 GCGGCGTTTGGACCCAAAACGCCACTATTGCTCAATGTTTT
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTCAAT-TTTT
** *
32684621 GTAGTGTTTGGACCAAAAACGCCACTATTGCTCAAATTTTT
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTC-AATTTTT
* * *
32684662 GCGGCGTTTGGACAAAAAATGCCACTATTGCTCAACATTTT
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTCAA-TTTTT
*
32684703 ACGGCGTTTGGACCAAAAACGCCACTATTGCTCA
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTCA
32684737 CCTTTTACGG
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 2 0.02
41 96 0.95
42 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
GCGGCGTTTGGACCAAAAACGCCACTATTGCTCAATTTTT
Found at i:32686546 original size:25 final size:26
Alignment explanation
Indices: 32686509--32686559 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
32686499 GTTGTAAATA
*
32686509 AGAAAAATATCTTTAGA-AATTTTCT
1 AGAAAAATATCTTCAGAGAATTTTCT
* *
32686534 AGAATAATCTCTTCAGAGAATTTTCT
1 AGAAAAATATCTTCAGAGAATTTTCT
32686560 CTCTACAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (26 bp):
AGAAAAATATCTTCAGAGAATTTTCT
Found at i:32686780 original size:17 final size:17
Alignment explanation
Indices: 32686758--32686853 Score: 69
Period size: 17 Copynumber: 5.6 Consensus size: 17
32686748 ATTTACAAGA
32686758 TTAATATTAAATTAAAT
1 TTAATATTAAATTAAAT
32686775 TTAATATTAAGA-TAATCACT
1 TTAATATTAA-ATTAA--A-T
32686795 TTAATATTAAATT-AA-
1 TTAATATTAAATTAAAT
* *
32686810 -TAA-ACTACTATTAAGA-
1 TTAATATTA-AATTAA-AT
*
32686826 TAAATATTAAATTAAAT
1 TTAATATTAAATTAAAT
32686843 TTAATATTAAA
1 TTAATATTAAA
32686854 ATATTAAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 22
0.69 0.07 0.24
Matches are distributed among these distances:
13 3 0.05
14 6 0.10
15 1 0.02
16 2 0.03
17 31 0.50
18 4 0.06
19 3 0.05
20 12 0.19
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (17 bp):
TTAATATTAAATTAAAT
Found at i:32686810 original size:20 final size:18
Alignment explanation
Indices: 32686758--32686861 Score: 72
Period size: 20 Copynumber: 5.6 Consensus size: 18
32686748 ATTTACAAGA
32686758 TTAATATTAAATTAA-AT
1 TTAATATTAAATTAATAT
32686775 TTAATATTAAGA-TAATCACT
1 TTAATATTAA-ATTAAT-A-T
*
32686795 TTAATATTAAATTAATAAA
1 TTAATATTAAATTAAT-AT
* * *
32686814 CTACTATTAAGATAAATA-
1 TTAATATTAA-ATTAATAT
32686832 TTAA-ATTAAATTTAATAT
1 TTAATATTAAA-TTAATAT
*
32686850 TAAAATATTAAA
1 T-TAATATTAAA
32686862 ATATTAAAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
16 1 0.01
17 23 0.34
18 4 0.06
19 13 0.19
20 27 0.40
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (18 bp):
TTAATATTAAATTAATAT
Found at i:32686858 original size:8 final size:8
Alignment explanation
Indices: 32686845--32686872 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
32686835 AATTAAATTT
32686845 AATATTAA
1 AATATTAA
32686853 AATATTAA
1 AATATTAA
32686861 AATATTAA
1 AATATTAA
32686869 AATA
1 AATA
32686873 ATATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATTAA
Found at i:32696991 original size:42 final size:42
Alignment explanation
Indices: 32696942--32697051 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
32696932 CATGGCCAAG
* * *
32696942 CCACACGCCCGTGTGCCAGGCCGTGTACCTTTTGAAATGAAC
1 CCACACGCTCGTGTGCCAGGCCGTGTACCCTTCGAAATGAAC
*
32696984 CCACACGCTCGTGTGCCTGGCCGTGTACCCTTCGAAATGAAC
1 CCACACGCTCGTGTGCCAGGCCGTGTACCCTTCGAAATGAAC
* * *
32697026 CCAGATGCTTGTGTGCCAGGCCGTGT
1 CCACACGCTCGTGTGCCAGGCCGTGT
32697052 GCTAGGCCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.18, C:0.33, G:0.26, T:0.23
Consensus pattern (42 bp):
CCACACGCTCGTGTGCCAGGCCGTGTACCCTTCGAAATGAAC
Found at i:32697072 original size:12 final size:12
Alignment explanation
Indices: 32697037--32697075 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
32697027 CAGATGCTTG
* *
32697037 TGTGCCAGGCCG
1 TGTGCTAGGCCA
32697049 TGTGCTAGGCCA
1 TGTGCTAGGCCA
32697061 TGTGCTAGGCCA
1 TGTGCTAGGCCA
32697073 TGT
1 TGT
32697076 AACGACCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.13, C:0.26, G:0.36, T:0.26
Consensus pattern (12 bp):
TGTGCTAGGCCA
Found at i:32702630 original size:51 final size:50
Alignment explanation
Indices: 32702504--32702889 Score: 371
Period size: 51 Copynumber: 7.6 Consensus size: 50
32702494 TCGATAAACG
* * *
32702504 TAGTAGCCTTCACATAGTACTACACACGTGATCAAG-TTTTACGGTTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTTT-CGGTACACA
32702554 TAGTAGCCTTCACATAGTACTACACACGTGACCAAAGATTTTCGGTACACA
1 TAGTAGCCTTCACATAGTACTACACACGTGACC-AAGATTTTCGGTACACA
* * ** * *
32702605 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACA
1 TAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTT-TCGGTACACA
* ** * * *
32702656 TAGTAGCCTTCTCGCAGTACTACATACGTGACCAAAGCTTCTCGGTACACA
1 TAGTAGCCTTCACATAGTACTACACACGTGACC-AAGATTTTCGGTACACA
* * * ** * * * *
32702707 TTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTGATCGATTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACCAAGATT-TTCGGTACACA
* * *
32702758 TAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTT-GGTACATA
1 TAGTAGCCTTCACATAGTACTACACACGTGACC-AAGATT-TTCGGTACACA
* * * ** * *
32702809 TTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTT-TCGGTACACA
*
32702860 TAGTAGCCTTCACACAGTACTACACACGTG
1 TAGTAGCCTTCACATAGTACTACACACGTG
32702890 TTCATCGATA
Statistics
Matches: 268, Mismatches: 60, Indels: 15
0.78 0.17 0.04
Matches are distributed among these distances:
49 1 0.00
50 44 0.16
51 212 0.79
52 11 0.04
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (50 bp):
TAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTTTCGGTACACA
Found at i:32702679 original size:102 final size:102
Alignment explanation
Indices: 32702504--32702889 Score: 569
Period size: 102 Copynumber: 3.8 Consensus size: 102
32702494 TCGATAAACG
* * * *** *
32702504 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTTCACGTAGTAGCCTTCACA
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
* *
32702568 TAGTACTACACACGTGACCAAAGATTTTCGGTACACA
66 CAGTACTACACACGTGACCAAAGCTTTTCGGTACACA
* * *
32702605 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACATAGTAGCCTTCTCG
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
* *
32702670 CAGTACTACATACGTGACCAAAGCTTCTCGGTACACA
66 CAGTACTACACACGTGACCAAAGCTTTTCGGTACACA
* *
32702707 TTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTGATCGATTCACGTAGTAGCCTTCACA
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
*
32702772 CAGTACTACACACGTGACCAAAGCTTCTT-GGTACATA
66 CAGTACTACACACGTGACCAAAGCTT-TTCGGTACACA
* * *
32702809 TTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACGTAGTAGCCTTCACA
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
32702874 CAGTACTACACACGTG
66 CAGTACTACACACGTG
32702890 TTCATCGATA
Statistics
Matches: 258, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
101 35 0.14
102 222 0.86
103 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (102 bp):
TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
CAGTACTACACACGTGACCAAAGCTTTTCGGTACACA
Found at i:32703396 original size:31 final size:28
Alignment explanation
Indices: 32703358--32703420 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 28
32703348 GCTTCGACTC
* *
32703358 AACTTTTGTCAAAATTATGATTTTGTCCCTA
1 AACTTTTG-CAAAATTA-CATTTT-TCCCCA
*
32703389 AACTTTTGCATAATTACATTTTTCCCCA
1 AACTTTTGCAAAATTACATTTTTCCCCA
32703417 AACT
1 AACT
32703421 CGAAAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 9 0.31
29 5 0.17
30 7 0.24
31 8 0.28
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43
Consensus pattern (28 bp):
AACTTTTGCAAAATTACATTTTTCCCCA
Found at i:32707741 original size:39 final size:39
Alignment explanation
Indices: 32707698--32707784 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
32707688 CATGGTACAG
* *
32707698 AAGTGCTATCAAGAGTACCGAAGTACAACAGGGGCACGT
1 AAGTGCGATCAAGAGTACCGAAGTACAACAGGGGCACGC
* * * *
32707737 AAGTGCGATTATGGGTACCGAAGTACAATAGGGGCACGC
1 AAGTGCGATCAAGAGTACCGAAGTACAACAGGGGCACGC
*
32707776 AAGTACGAT
1 AAGTGCGAT
32707785 TAGGGATATA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.17
Consensus pattern (39 bp):
AAGTGCGATCAAGAGTACCGAAGTACAACAGGGGCACGC
Found at i:32707785 original size:39 final size:39
Alignment explanation
Indices: 32707712--32707786 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
32707702 GCTATCAAGA
* *
32707712 GTACCGAAGTACAACAGGGGCACGTAAGTGCGATTATGG
1 GTACCGAAGTACAACAGGGGCACGCAAGTACGATTATGG
*
32707751 GTACCGAAGTACAATAGGGGCACGCAAGTACGATTA
1 GTACCGAAGTACAACAGGGGCACGCAAGTACGATTA
32707787 GGGATATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.33, C:0.19, G:0.31, T:0.17
Consensus pattern (39 bp):
GTACCGAAGTACAACAGGGGCACGCAAGTACGATTATGG
Found at i:32713655 original size:46 final size:45
Alignment explanation
Indices: 32713605--32713694 Score: 101
Period size: 45 Copynumber: 2.0 Consensus size: 45
32713595 AGAATGAATA
*
32713605 GAAATAAAGAAATGAAAAACATTT-AGAAATGATTATGGTTTTCTCC
1 GAAATAAAGAAATG-AAAACATTTGA-AAATGAATATGGTTTTCTCC
** * * *
32713651 GAAATGGAGAAATGGAATCATTTGAAAATGAATGTGGTTTTCTC
1 GAAATAAAGAAATGAAAACATTTGAAAATGAATATGGTTTTCTC
32713695 AAAAATGGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
45 24 0.65
46 13 0.35
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (45 bp):
GAAATAAAGAAATGAAAACATTTGAAAATGAATATGGTTTTCTCC
Found at i:32713708 original size:6 final size:6
Alignment explanation
Indices: 32713696--32713739 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
32713686 GGTTTTCTCA
* *
32713696 AAAATG GAAATG GAAATG AAAATG AAAATG AAAATG AGAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A
32713740 TTCATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.61, C:0.00, G:0.23, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:32715778 original size:25 final size:26
Alignment explanation
Indices: 32715747--32715818 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 26
32715737 CATCCTAACA
32715747 TTGGCTCTCTTGAGCTTCCCGAT-AT
1 TTGGCTCTCTTGAGCTTCCCGATCAT
* *
32715772 TTGGCTCTCATAAGCTTCCCG-TCAT
1 TTGGCTCTCTTGAGCTTCCCGATCAT
* *
32715797 TTAGCTCT-TATGAGCATCCCGA
1 TTGGCTCTCT-TGAGCTTCCCGA
32715819 CGTATGACTC
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (26 bp):
TTGGCTCTCTTGAGCTTCCCGATCAT
Found at i:32715935 original size:24 final size:24
Alignment explanation
Indices: 32715884--32715941 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
32715874 TGGATCTCCG
* * *
32715884 GAGCTTCCTGATATTGGCTCGCAT
1 GAGCTTCCCGATATTGGCTCGAAA
*
32715908 GAGCTTCCCGATTTTGGCTCGAAA
1 GAGCTTCCCGATATTGGCTCGAAA
*
32715932 GAGCTACCCG
1 GAGCTTCCCG
32715942 TTTATATGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.28
Consensus pattern (24 bp):
GAGCTTCCCGATATTGGCTCGAAA
Found at i:32723701 original size:25 final size:25
Alignment explanation
Indices: 32723663--32723743 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
32723653 GCTCTCTTGG
* * * *
32723663 GCTTCTCGATATTTGGCTCTCACAA
1 GCTTCCCGACATTTGGCTCTTACGA
* * *
32723688 GCTTCCCGTCATTTAGCTCTTATGA
1 GCTTCCCGACATTTGGCTCTTACGA
* *
32723713 GCATCCCGACATATGGCTCTTACGA
1 GCTTCCCGACATTTGGCTCTTACGA
32723738 GCTTCC
1 GCTTCC
32723744 TGATTTAAGG
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (25 bp):
GCTTCCCGACATTTGGCTCTTACGA
Found at i:32723804 original size:24 final size:24
Alignment explanation
Indices: 32723736--32723805 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 24
32723726 TGGCTCTTAC
* *
32723736 GAGCTTCCTGATTTAAGGCTCTCTCAT
1 GAGCTTCCTGA-TTATGG--CTCACAT
* *
32723763 TAGCTTCCCGA-TATTGGCTCACAT
1 GAGCTTCCTGATTA-TGGCTCACAT
32723787 GAGCTTCCTGATTATGGCT
1 GAGCTTCCTGATTATGGCT
32723806 TGAAAGATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
24 20 0.57
25 4 0.11
26 2 0.06
27 9 0.26
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (24 bp):
GAGCTTCCTGATTATGGCTCACAT
Found at i:32747056 original size:25 final size:25
Alignment explanation
Indices: 32747025--32747107 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
32747015 GTTCTGACCC
32747025 ACAGCTCGTGTAAGCATACCGATTT
1 ACAGCTCGTGTAAGCATACCGATTT
* * *
32747050 ATAGCTCGTG-AGAGAATACCGATCT
1 ACAGCTCGTGTA-AGCATACCGATTT
* * * *
32747075 ACAGTTCGAGTAAGCATACTGATTC
1 ACAGCTCGTGTAAGCATACCGATTT
32747100 ACAGCTCG
1 ACAGCTCG
32747108 CATGAGCATA
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.96
26 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (25 bp):
ACAGCTCGTGTAAGCATACCGATTT
Found at i:32748265 original size:15 final size:15
Alignment explanation
Indices: 32748245--32748295 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
32748235 TCAACCGTGT
32748245 GTGACACACGGCTAG
1 GTGACACACGGCTAG
* *
32748260 GTGACAAGACCG-T-G
1 GTGAC-ACACGGCTAG
32748274 TGTGACACACGGCTAG
1 -GTGACACACGGCTAG
32748290 GTGACA
1 GTGACA
32748296 AGACCGTGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 5 0.18
15 18 0.64
16 5 0.18
ACGTcount: A:0.27, C:0.24, G:0.33, T:0.16
Consensus pattern (15 bp):
GTGACACACGGCTAG
Found at i:32748272 original size:30 final size:30
Alignment explanation
Indices: 32748238--32748306 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
32748228 GTGCGTCTCA
32748238 ACCGTGTGTGACACACGGCTAGGTGACAAG
1 ACCGTGTGTGACACACGGCTAGGTGACAAG
32748268 ACCGTGTGTGACACACGGCTAGGTGACAAG
1 ACCGTGTGTGACACACGGCTAGGTGACAAG
32748298 ACCGTGTGT
1 ACCGTGTGT
32748307 CCCCTGTAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.25, C:0.23, G:0.33, T:0.19
Consensus pattern (30 bp):
ACCGTGTGTGACACACGGCTAGGTGACAAG
Found at i:32758665 original size:17 final size:17
Alignment explanation
Indices: 32758633--32758666 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32758623 ATTCCAATTG
**
32758633 AACGCTCGCGCGATGGA
1 AACGCTCGCGAAATGGA
32758650 AACGCTCGCGAAATGGA
1 AACGCTCGCGAAATGGA
32758667 GATCTAGACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.26, G:0.32, T:0.12
Consensus pattern (17 bp):
AACGCTCGCGAAATGGA
Found at i:32772839 original size:90 final size:90
Alignment explanation
Indices: 32772685--32772877 Score: 350
Period size: 90 Copynumber: 2.1 Consensus size: 90
32772675 ACACTTACAC
32772685 CTCTATTATGCCTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTT
1 CTCTATTATG-CTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTT
*
32772750 TAATTTTATAATATATTTAATCGGTA
65 TAATTTTATAATATATTTAATCGGAA
* *
32772776 CTCTATTATGCTTAACTTAAGATTTAATCTGCATACTTTAACTTTTTACATTACTTAGCTTTTTT
1 CTCTATTATGCTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTTT
32772841 AATTTTATAATATATTTAATCGGAA
66 AATTTTATAATATATTTAATCGGAA
32772866 CTCTATTATGCT
1 CTCTATTATGCT
32772878 GACATCAATT
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
90 89 0.90
91 10 0.10
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.49
Consensus pattern (90 bp):
CTCTATTATGCTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTTT
AATTTTATAATATATTTAATCGGAA
Found at i:32774582 original size:16 final size:16
Alignment explanation
Indices: 32774539--32774582 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
32774529 AAAATCAAAT
*
32774539 AAAATTACATAATATA
1 AAAATTACATGATATA
*
32774555 AAAGTTACATGATATA
1 AAAATTACATGATATA
*
32774571 AAAATTAAATGA
1 AAAATTACATGA
32774583 GTTAACAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (16 bp):
AAAATTACATGATATA
Found at i:32774765 original size:60 final size:60
Alignment explanation
Indices: 32774691--32774812 Score: 183
Period size: 60 Copynumber: 2.0 Consensus size: 60
32774681 ATACTAAACT
* * * * *
32774691 AAACACAACAATTTATAGCTTAATCCTAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATT-AATTATAAAATAATTAC
32774751 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
32774811 AA
1 AA
32774813 TATTCATACA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 4 0.07
60 52 0.93
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:32774829 original size:19 final size:19
Alignment explanation
Indices: 32774805--32775265 Score: 171
Period size: 19 Copynumber: 22.3 Consensus size: 19
32774795 ATTATAAAAT
32774805 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
32774824 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC--A-A
*
32774846 ATATTACAATATCCATACAA
1 A-ATTACAATATTCATACAA
32774866 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC--A-A
32774888 ATATTACAATATTCATACAAAATTACAA
1 A-ATTACAATA-T--T-C---A-TACAA
32774916 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* * *
32774935 AA-TACTA-ATCCAAAACTATA
1 AATTACAATATTC-ATAC-A-A
*
32774955 AA-TACAAAATTAATT-ATAAAA
1 AATTAC--AA-T-ATTCATACAA
*
32774976 TAATTAAAATATTCATACAA
1 -AATTACAATATTCATACAA
32774996 AATTACAAAATTAAAATATTCATACAA
1 AATTAC--------AATATTCATACAA
*
32775023 AATTACAA-AAT--TACAA
1 AATTACAATATTCATACAA
32775039 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* *
32775058 AA-TACTAATCA--AAAACTATA
1 AATTAC-AAT-ATTCATAC-A-A
*
32775078 AA-TACAAAATTAATT-ATAAAA
1 AATTAC--AA-T-ATTCATACAA
*
32775099 TAATTACAATATTCATAAAA
1 -AATTACAATATTCATACAA
32775119 AATTACAATATTCATACAAAA
1 AATTACAATATTCATAC--AA
*
32775140 AATTACACTATTCATACAA
1 AATTACAATATTCATACAA
* *
32775159 AA-TACTA-ATCCA-ACACTA
1 AATTACAATATTCATACA--A
* *
32775177 TAAATACAAAATTAATT-ATAAAA
1 -AATTAC--AA-T-ATTCATACAA
32775200 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
*
32775220 AATTATAATATTCATACAAA
1 AATTACAATATTCATAC-AA
*
32775240 AAGTTACAATATACATACAA
1 AA-TTACAATATTCATACAA
32775260 AATTAC
1 AATTAC
32775266 CCATTGGCGC
Statistics
Matches: 345, Mismatches: 33, Indels: 128
0.68 0.07 0.25
Matches are distributed among these distances:
16 16 0.05
17 9 0.03
18 19 0.06
19 109 0.32
20 46 0.13
21 44 0.13
22 14 0.04
23 41 0.12
24 3 0.01
25 6 0.02
26 2 0.01
27 29 0.08
28 2 0.01
29 1 0.00
30 1 0.00
31 3 0.01
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (19 bp):
AATTACAATATTCATACAA
Found at i:32774851 original size:23 final size:22
Alignment explanation
Indices: 32774805--32774908 Score: 139
Period size: 23 Copynumber: 4.9 Consensus size: 22
32774795 ATTATAAAAT
32774805 AATTACAATATTCATAC--A-A
1 AATTACAATATTCATACAAACA
32774824 AATTACAATATTCATACAAACA
1 AATTACAATATTCATACAAACA
*
32774846 ATATTACAATATCCATAC--A-A
1 A-ATTACAATATTCATACAAACA
32774866 AATTACAATATTCATACAAACA
1 AATTACAATATTCATACAAACA
32774888 ATATTACAATATTCATACAAA
1 A-ATTACAATATTCATACAAA
32774909 ATTACAAAAT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
19 32 0.43
20 2 0.03
21 3 0.04
22 4 0.05
23 34 0.45
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (22 bp):
AATTACAATATTCATACAAACA
Found at i:32774854 original size:42 final size:42
Alignment explanation
Indices: 32774806--32774915 Score: 211
Period size: 42 Copynumber: 2.6 Consensus size: 42
32774796 TTATAAAATA
32774806 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
1 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
*
32774848 ATTACAATATCCATACAAAATTACAATATTCATACAAACAAT
1 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
32774890 ATTACAATATTCATACAAAATTACAA
1 ATTACAATATTCATACAAAATTACAA
32774916 AATTACAATA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (42 bp):
ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
Found at i:32774923 original size:27 final size:27
Alignment explanation
Indices: 32774861--32775038 Score: 154
Period size: 27 Copynumber: 6.5 Consensus size: 27
32774851 ACAATATCCA
32774861 TACAAAATTACAATATTCATAC--AA-
1 TACAAAATTACAATATTCATACAAAAT
*
32774885 -ACAATATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
32774911 TACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
* * *
32774938 ACTAATCCAAAACTATAA-ATACA-A-AATTAATT
1 --T-A--CAAAATTACAATATTCATACAA--AA-T
* *
32774970 ATAAAATAATTAAAATATTCATACAAAAT
1 -TACAA-AATTACAATATTCATACAAAAT
*
32774999 TACAAAATTAAAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
32775026 TACAAAATTACAA
1 TACAAAATTACAA
32775039 AATTACAATA
Statistics
Matches: 126, Mismatches: 12, Indels: 29
0.75 0.07 0.17
Matches are distributed among these distances:
23 20 0.16
25 2 0.02
27 59 0.47
28 6 0.05
29 10 0.08
30 9 0.07
31 8 0.06
32 12 0.10
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.29
Consensus pattern (27 bp):
TACAAAATTACAATATTCATACAAAAT
Found at i:32774981 original size:61 final size:61
Alignment explanation
Indices: 32774916--32775121 Score: 265
Period size: 61 Copynumber: 3.4 Consensus size: 61
32774906 AAAATTACAA
*
32774916 AATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAAATTAATTATAAAAT
1 AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
* * * ** ** *
32774977 AATTAAAATATTCATACAAAATTACAAAAT-TAAAA-TATTCATACAAAATTACAAAATTACAA-
1 AATTACAATATTCATACAAAA-TAC-TAATCAAAAACTATAAATACAAAATTA-ATTA-TAAAAT
32775039 AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
1 AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
*
32775100 AATTACAATATTCATAAAAAAT
1 AATTACAATATTCATACAAAAT
32775122 TACAATATTC
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
60 7 0.06
61 64 0.53
62 43 0.36
63 7 0.06
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.30
Consensus pattern (61 bp):
AATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
Found at i:32775004 original size:8 final size:8
Alignment explanation
Indices: 32774991--32775046 Score: 69
Period size: 8 Copynumber: 6.6 Consensus size: 8
32774981 AAAATATTCA
32774991 TACAAAAT
1 TACAAAAT
32774999 TACAAAAT
1 TACAAAAT
32775007 TA-AAATATT
1 TACAAA-A-T
32775016 CATACAAAAT
1 --TACAAAAT
32775026 TACAAAAT
1 TACAAAAT
32775034 TACAAAAT
1 TACAAAAT
32775042 TACAA
1 TACAA
32775047 TATTCATACA
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
7 3 0.07
8 32 0.74
9 1 0.02
10 1 0.02
11 3 0.07
12 3 0.07
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (8 bp):
TACAAAAT
Found at i:32775008 original size:42 final size:41
Alignment explanation
Indices: 32774957--32775161 Score: 131
Period size: 40 Copynumber: 5.0 Consensus size: 41
32774947 AAACTATAAA
*
32774957 TACAAAATTAATTATAAAATAATTAAAATATTCATACAAAAT
1 TACAAAATTAA-TATAAAATAATTACAATATTCATACAAAAT
*
32774999 TACAAAATTAAAATATTCATACAA-AATTACAA-AAT--TACAAAAT
1 TACAAAATT--AATA-T-A-A-AATAATTACAATATTCATACAAAAT
* * * * * ** *
32775042 TACAATATTCATACAAAATACTAATCAA-AAAC-TA-TAAA-
1 TACAAAATTAATATAAAATAATTA-CAATATTCATACAAAAT
*
32775080 TACAAAATTAATTATAAAATAATTACAATATTCATAAAAAAT
1 TACAAAATTAA-TATAAAATAATTACAATATTCATACAAAAT
* * * *
32775122 TACAATATTCATACAAAA-AATTACACTATTCATACAAAAT
1 TACAAAATTAATATAAAATAATTACAATATTCATACAAAAT
32775162 ACTAATCCAA
Statistics
Matches: 127, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
37 2 0.02
38 16 0.13
39 21 0.17
40 24 0.19
41 12 0.09
42 18 0.14
43 18 0.14
44 3 0.02
45 3 0.02
46 8 0.06
47 2 0.02
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (41 bp):
TACAAAATTAATATAAAATAATTACAATATTCATACAAAAT
Found at i:32775034 original size:35 final size:35
Alignment explanation
Indices: 32774991--32775060 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
32774981 AAAATATTCA
32774991 TACAAAATTACAAAATTAAAATATTCATACAAAAT
1 TACAAAATTACAAAATTAAAATATTCATACAAAAT
*
32775026 TACAAAATTACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAAAATTAAAATATTCATACAAAAT
32775061 ACTAATCAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.29
Consensus pattern (35 bp):
TACAAAATTACAAAATTAAAATATTCATACAAAAT
Found at i:32775048 original size:123 final size:118
Alignment explanation
Indices: 32774901--32775224 Score: 448
Period size: 123 Copynumber: 2.8 Consensus size: 118
32774891 TTACAATATT
32774901 CATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAAATT
1 CATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAAATT
*
32774966 AATTATAAAATAATTAAAATATTCATACAAAATTACAAAATTAAAATATTCATA
66 AATTATAAAATAATTACAATATTCATACAAAATTA-AAAATTAAAATATTCATA
*
32775020 CAAAATTACAAAATTACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAA
1 C---A-TACAAAATTACAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAA
*
32775085 AATTAATTATAAAATAATTACAATATTCAT-----A--AAAAATTACAATATTCATA
62 AATTAATTATAAAATAATTACAATATTCATACAAAATTAAAAATTAAAATATTCATA
*
32775135 CA-A-AAAATTAC------AC--TATTCATACAAAATACTAATCCAACACTATAAATACAAAATT
1 CATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAAATT
32775190 AATTATAAAATAATTACAATATTCATACAAAATTA
66 AATTATAAAATAATTACAATATTCATACAAAATTA
32775225 TAATATTCAT
Statistics
Matches: 189, Mismatches: 5, Indels: 33
0.83 0.02 0.15
Matches are distributed among these distances:
101 66 0.35
103 2 0.01
106 1 0.01
108 1 0.01
109 8 0.04
110 1 0.01
112 1 0.01
115 18 0.10
116 1 0.01
118 1 0.01
119 1 0.01
122 1 0.01
123 87 0.46
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.29
Consensus pattern (118 bp):
CATACAAAATTACAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAAATT
AATTATAAAATAATTACAATATTCATACAAAATTAAAAATTAAAATATTCATA
Found at i:32775139 original size:21 final size:21
Alignment explanation
Indices: 32775095--32775261 Score: 129
Period size: 21 Copynumber: 8.2 Consensus size: 21
32775085 AATTAATTAT
32775095 AAAATAATTACAATATTCAT--
1 AAAA-AATTACAATATTCATAC
32775115 AAAAAATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
*
32775136 AAAAAATTACACTATTCATAC
1 AAAAAATTACAATATTCATAC
* *
32775157 --AAAA-TACTA-ATCCA-AC
1 AAAAAATTACAATATTCATAC
* * * *
32775173 ACTATAAA-TACAAAATTAATTAT
1 A--AAAAATTACAATATTCA-TAC
32775196 AAAATAATTACAATATTCATAC
1 AAAA-AATTACAATATTCATAC
*
32775218 --AAAATTATAATATTCATAC
1 AAAAAATTACAATATTCATAC
* *
32775237 AAAAAGTTACAATATACATAC
1 AAAAAATTACAATATTCATAC
32775258 AAAA
1 AAAA
32775262 TTACCCATTG
Statistics
Matches: 117, Mismatches: 17, Indels: 25
0.74 0.11 0.16
Matches are distributed among these distances:
16 2 0.02
17 4 0.03
18 3 0.03
19 35 0.30
20 13 0.11
21 45 0.38
22 4 0.03
23 11 0.09
ACGTcount: A:0.56, C:0.14, G:0.01, T:0.29
Consensus pattern (21 bp):
AAAAAATTACAATATTCATAC
Found at i:32775158 original size:101 final size:101
Alignment explanation
Indices: 32775004--32775262 Score: 402
Period size: 101 Copynumber: 2.6 Consensus size: 101
32774994 AAAATTACAA
* *
32775004 AATTAAAATATTCATACAAAATTACAA-AAT--TAC--AAAATTACAATATTCATACAAAATACT
1 AATTACAATATTCATACAAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAATACT
32775064 AATCAAAAACTATAAATACAAAATTAATTATAAAAT
66 AATCAAAAACTATAAATACAAAATTAATTATAAAAT
* *
32775100 AATTACAATATTCATAAAAAATTACAATATTCATACAAAAAATTACACTATTCATACAAAATACT
1 AATTACAATATTCATACAAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAATACT
* *
32775165 AATCCAACACTATAAATACAAAATTAATTATAAAAT
66 AATCAAAAACTATAAATACAAAATTAATTATAAAAT
* * *
32775201 AATTACAATATTCATACAAAATTATAATATTCATACAAAAAGTTACAATATACATACAAAAT
1 AATTACAATATTCATACAAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAAT
32775263 TACCCATTGG
Statistics
Matches: 147, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
96 25 0.17
97 2 0.01
99 3 0.02
101 117 0.80
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (101 bp):
AATTACAATATTCATACAAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAATACT
AATCAAAAACTATAAATACAAAATTAATTATAAAAT
Found at i:32775311 original size:27 final size:27
Alignment explanation
Indices: 32775270--32775342 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
32775260 AATTACCCAT
*
32775270 TGGCGCCTCCCTATGAGGCACTTTTAA
1 TGGCACCTCCCTATGAGGCACTTTTAA
*
32775297 TGGCACCTCCTTATGAGGCACTTTTAA
1 TGGCACCTCCCTATGAGGCACTTTTAA
**
32775324 TGGTTCCTCCCTATGAGGC
1 TGGCACCTCCCTATGAGGC
32775343 GCCACCCGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.18, C:0.29, G:0.22, T:0.32
Consensus pattern (27 bp):
TGGCACCTCCCTATGAGGCACTTTTAA
Found at i:32776157 original size:19 final size:18
Alignment explanation
Indices: 32776116--32776164 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
32776106 TCAAGTTATG
* *
32776116 TAAATA-TTAACTATATT
1 TAAATATTTAAATATATA
32776133 TAAATATTTAAATATAATA
1 TAAATATTTAAATAT-ATA
*
32776152 TAAATATATAAAT
1 TAAATATTTAAAT
32776165 TGTCAGATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 6 0.22
18 7 0.26
19 14 0.52
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
TAAATATTTAAATATATA
Found at i:32781221 original size:25 final size:25
Alignment explanation
Indices: 32781187--32781236 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32781177 GAAAACATGC
32781187 CTCCAAGCAGTGACGGTGGCTGAGG
1 CTCCAAGCAGTGACGGTGGCTGAGG
32781212 CTCCAAGCAGTGACGGTGGCTGAGG
1 CTCCAAGCAGTGACGGTGGCTGAGG
32781237 AGTTGGGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (25 bp):
CTCCAAGCAGTGACGGTGGCTGAGG
Found at i:32782420 original size:28 final size:28
Alignment explanation
Indices: 32782376--32782430 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
32782366 AAAGTTAGAT
*
32782376 AAATTAGTCCTTTCACATTGGATTAAAC
1 AAATTAGTCCTTACACATTGGATTAAAC
*
32782404 AAATTAGTCCTTACACATTGGGTTAAA
1 AAATTAGTCCTTACACATTGGATTAAA
32782431 GAAAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (28 bp):
AAATTAGTCCTTACACATTGGATTAAAC
Found at i:32784581 original size:3 final size:3
Alignment explanation
Indices: 32784575--32784639 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
32784565 TAATGTTACC
32784575 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
32784623 ATT ATT ATT ATC ATT AT
1 ATT ATT ATT ATT ATT AT
32784640 ATTTCCATTT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:32785424 original size:110 final size:109
Alignment explanation
Indices: 32785129--32785525 Score: 587
Period size: 109 Copynumber: 3.6 Consensus size: 109
32785119 TTTCTAATTG
* * *
32785129 AGGCAATATTTAGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGAGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* * *
32785194 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTTTAAAATA
66 CGTTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATA
* * * * *
32785238 AGGCAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCTTAAGGTGCTAGGTGTCAATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* * **
32785303 CATTCAACCAAATGGCTTAATATCCTTTTAAAACCTTTCAAATA
66 CGTTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATA
* *
32785347 AGGCAATGTTTTGCGTTTGGTAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTATCGATTTTTC
1 AGGCAATGTTTTGCGTTTGG-AAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
32785412 TCGTTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTTCGAAATA
65 TCGTTCAACCAAATGGCTAAATATCCTTTTAAAAA-TTTTC-AAATA
* *
32785459 AGGTAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
32785524 TC
65 TC
32785526 ATTTAATCGA
Statistics
Matches: 254, Mismatches: 30, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
109 114 0.45
110 69 0.27
111 4 0.02
112 65 0.26
113 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATA
Found at i:32788944 original size:16 final size:16
Alignment explanation
Indices: 32788919--32788971 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
32788909 AATGAAAATG
*
32788919 AAAATGAAAAAAATCA
1 AAAATAAAAAAAATCA
*
32788935 AAAATAAAAAAAAACA
1 AAAATAAAAAAAATCA
32788951 GAAAGA-AGAAAAAAATCA
1 -AAA-ATA-AAAAAAATCA
32788969 AAA
1 AAA
32788972 TCAAAATGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.79, C:0.06, G:0.08, T:0.08
Consensus pattern (16 bp):
AAAATAAAAAAAATCA
Found at i:32788970 original size:61 final size:64
Alignment explanation
Indices: 32788905--32789054 Score: 175
Period size: 61 Copynumber: 2.4 Consensus size: 64
32788895 AAAATCAAAG
* *
32788905 TCAAAATGAAAATGAAAATGAAAAAAATCAAA-AATAA-AAAAAAACAGAAA-GAAGA-AAAAAA
1 TCAAAATGAAAATGAAAATGAAAAAAAT-AAAGAAGAATAAAAAAACAGAAATCAAGAGAAAAAA
* * * *
32788966 TCAAAATCAAAATGAAAATGAGAAAAATAAAGAAGAATAAAAAAAGAGAAATCTAGATGAAAAAA
1 TCAAAATGAAAATGAAAATGAAAAAAATAAAGAAGAATAAAAAAACAGAAATCAAGA-GAAAAAA
* *
32789031 TCAGAATGAAAAAGAAAA-GAAAAA
1 TCAAAATGAAAATGAAAATGAAAAA
32789055 GAAAAGGAGA
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
60 3 0.04
61 30 0.41
62 12 0.16
63 3 0.04
64 5 0.07
65 21 0.28
ACGTcount: A:0.71, C:0.05, G:0.13, T:0.11
Consensus pattern (64 bp):
TCAAAATGAAAATGAAAATGAAAAAAATAAAGAAGAATAAAAAAACAGAAATCAAGAGAAAAAA
Found at i:32789939 original size:13 final size:13
Alignment explanation
Indices: 32789923--32789962 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
32789913 TCAAAAAAAT
32789923 GAATGAAAAATGA
1 GAATGAAAAATGA
*
32789936 GAATGAAAATTGAA
1 GAATGAAAAATG-A
*
32789950 AAATGAAAAATGA
1 GAATGAAAAATGA
32789963 AAAAAATGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.62, C:0.00, G:0.20, T:0.17
Consensus pattern (13 bp):
GAATGAAAAATGA
Found at i:32789951 original size:20 final size:21
Alignment explanation
Indices: 32789926--32789965 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32789916 AAAAAATGAA
*
32789926 TGAAAAATG-AGAATGAAAAT
1 TGAAAAATGAAAAATGAAAAT
32789946 TGAAAAATGAAAAATGAAAA
1 TGAAAAATGAAAAATGAAAA
32789966 AAATGGAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.65, C:0.00, G:0.17, T:0.17
Consensus pattern (21 bp):
TGAAAAATGAAAAATGAAAAT
Found at i:32789967 original size:8 final size:7
Alignment explanation
Indices: 32789924--32789966 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
32789914 CAAAAAAATG
32789924 AATGAAA
1 AATGAAA
*
32789931 AATG-AG
1 AATGAAA
32789937 AATGAAA
1 AATGAAA
*
32789944 ATTGAAA
1 AATGAAA
32789951 AATGAAA
1 AATGAAA
32789958 AATGAAA
1 AATGAAA
32789965 AA
1 AA
32789967 AATGGAGAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 5 0.16
7 26 0.84
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
AATGAAA
Found at i:32791314 original size:44 final size:43
Alignment explanation
Indices: 32791259--32792418 Score: 369
Period size: 44 Copynumber: 26.7 Consensus size: 43
32791249 GACACTATCC
* *
32791259 TATCTCACTGAAGTTACAGTGGAGCGGATTAAAATAAATGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAA-GATCT
* ** * ** * *
32791303 TATCTCTCTGAAGTTACAGCAGAGTAGATT-GCAT-CAGGTCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGATCT
* * * ** *
32791344 TATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAA-ATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA--TAAAGATCT
* *** *
32791390 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAATAAAGATCT
* * * * * ** *
32791434 TATCTCCCTG-AGATTACAGCGGAGTAGATCGAAGA-CACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGAT-TAAAATAAAGATCT
* * *
32791477 CATCTCACTGAAGTTACAGTGGAGCGGATTAAAATAAAAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAAT-AAAGATCT
* * * * * *
32791521 TATCTCTCTGAAGTTACAGTAGAGTAGATT-ACAT-CAGGTCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGATCT
* ** ** *
32791562 TATCTCCCTGAGGTTACAGTGGAGTTGACCGAAGAATTTTAA-ATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA--TAAAGATCT
* *** *
32791608 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAATAAAGATCT
* * * * * ** *
32791652 TATCTCCTTG-AGATTACAGTGGAGTAGATCCAAGA-CACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGAT-TAAAATAAAGATCT
32791695 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAA-GATCT
* * * *** * *
32791739 TATCTCTCTGAAGTTACAGTAGAGTAGA-TCGTAT-CAGGTCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGATCT
** * *
32791780 TATCTCCCTG-AGATTACAGTGGAGCAGATTGAAGCTAGTA-ATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATT-AAAATA-AAGATCT
*
32791824 TATCTCCCTG-AGATTATAGTGGAGCAGATTAAAATAAAGGATCT
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAAA-GATCT
* *** * *** * *
32791868 TATCTCTCTGAAGTTACAGCAAAGTAGA-TCGCAT-CAGGTCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGATCT
* * * ** **
32791909 TATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA-TAAAGATCT
* *** *
32791955 TATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAATAAAGATCT
* * * ** *
32791999 TATCTCCCT-AAGATTACAGCGGAGCAGATTCAAGA-CACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATT-AAAATAAAGATCT
* * *** * * *
32792042 TATCTCCCTGAAGTTACAGTAGAGTAGA-TCGTAT-CAGGTCG
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGATCT
* ** * ** * *
32792083 TATCTTCCTG-AGATTACAGCAGAGTAGATTGAAGCTAGTA-ATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATT-AAAATA-AAGATCT
**
32792127 TATCTCCCTG-AGATTACAGTGGAGGGGATTAAAATAAAGGATCT
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAAA-GATCT
* *** * *** *
32792171 TATCTCTCTGAAGTTACAACAGAGTAGA-TCGCATCAAG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGATCT
* * ** ** *
32792212 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATTT
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA-TAAAGATCT
* * *** * *
32792258 TATCTCCCTGAGGTTACAATGGAGCAGATTGAAGCCAGAGATTT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAATAAAGATCT
* ** * ** * *
32792302 TATCTCCCTG-AGATTATAACGGAGTAGATTGAAGCTAGTA-ATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATT-AAAATA-AAGATCT
* * **
32792346 TAACTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAA-GATCT
* * *
32792390 TATCTCTCTGAAGTTACAGTAGAGTAGAT
1 TATCTCCCTGAAGTTACAGTGGAGCAGAT
32792419 CACATCAGAT
Statistics
Matches: 816, Mismatches: 238, Indels: 124
0.69 0.20 0.11
Matches are distributed among these distances:
40 4 0.00
41 162 0.20
42 16 0.02
43 115 0.14
44 378 0.46
45 13 0.02
46 126 0.15
47 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGATCT
Found at i:32791460 original size:90 final size:87
Alignment explanation
Indices: 32791299--32791468 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 87
32791289 AAAATAAATG
* * * * * * *
32791299 ATCTTATCTCTCTGAAGTTACAGCAGAGTAGATTGCATCAGGTCTTATCTCCTTGAGGTTACAGT
1 ATCTTATCTCCCTGAAGTTACAGCAGAGCAGATTGAACCAGGTCTTATCTCCCTGAGATTACAGC
32791364 GGAGTAGACCGAAGAATTTCAA
66 GGAGTAGACCGAAGAATTTCAA
* **
32791386 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAAGTTACAGCAGAGCAGATTGAA-CCAG-G-TCTTATCTCCCTGAGATTAC
*
32791451 AGCGGAGTAGATCGAAGA
63 AGCGGAGTAGACCGAAGA
32791469 CACTATCCCA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
87 31 0.45
88 3 0.04
89 1 0.01
90 34 0.49
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (87 bp):
ATCTTATCTCCCTGAAGTTACAGCAGAGCAGATTGAACCAGGTCTTATCTCCCTGAGATTACAGC
GGAGTAGACCGAAGAATTTCAA
Found at i:32791526 original size:87 final size:87
Alignment explanation
Indices: 32791391--32791549 Score: 203
Period size: 87 Copynumber: 1.8 Consensus size: 87
32791381 TTCAAATCTT
* * * * * * *
32791391 ATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTG-AGATTACAGCG
1 ATCTCACTGAAGTTACAGTGGAGCAGATTAAAACAAAAGATCTTATCTCCCTGAAG-TTACAGCA
32791455 GAGTAGATCGAAGACACTATCCC
65 GAGTAGATCGAAGACACTATCCC
* * * *
32791478 ATCTCACTGAAGTTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAG
1 ATCTCACTGAAGTTACAGTGGAGCAGATTAAAACAAAAGATCTTATCTCCCTGAAGTTACAGCAG
32791543 AGTAGAT
66 AGTAGAT
32791550 TACATCAGGT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
87 58 0.97
88 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (87 bp):
ATCTCACTGAAGTTACAGTGGAGCAGATTAAAACAAAAGATCTTATCTCCCTGAAGTTACAGCAG
AGTAGATCGAAGACACTATCCC
Found at i:32791586 original size:218 final size:218
Alignment explanation
Indices: 32791208--32792426 Score: 1344
Period size: 218 Copynumber: 5.6 Consensus size: 218
32791198 AGTGAATATT
* * * *
32791208 AGAGATCTTATCTTCCTAAGATTACAGCGGAGCAAATCGAAGACACTATCCTATCTCACTGAAGT
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCACTGAAGT
* * **
32791273 TACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATTGCATC
66 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
*
32791338 AGGTCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAAATCTTATCTCCCTGAGG
131 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAAATCTTATCTCCCTGAGG
32791403 TTACAGTGGAGCAGATTGAAGCC
196 TTACAGTGGAGCAGATTGAAGCC
*
32791426 AGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCCATCTCACTGAAGT
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCACTGAAGT
* *
32791491 TACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTACATC
66 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
* *
32791556 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTTGACCGAAGAATTTTAAATCTTATCTCCCTGAGG
131 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAAATCTTATCTCCCTGAGG
32791621 TTACAGTGGAGCAGATTGAAGCC
196 TTACAGTGGAGCAGATTGAAGCC
* * * *
32791644 AGAGATCTTATCTCCTTGAGATTACAGTGGAGTAGATCCAAGACACTATCCTATCTCCCTGAAGT
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCACTGAAGT
* **
32791709 TACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATC
66 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
* * ** * * *
32791774 AGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CTAGT--AATCCTATCTCCCTGAG
131 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAAT-TTCAAATCTTATCTCCCTGAG
* * ***
32791836 ATTATAGTGGAGCAGATT-AAAAT
195 GTTACAGTGGAGCAGATTGAAGCC
* * ** * * ** * * *
32791859 AAAGGATCTTATCTCTCTGA-AGTTACAGCAAAGTAGATCGCA-TCA-GGTCTTATCTCTCTGAG
1 AGA-GATCTTATCTCCCTGAGA-TTACAGCGGAGTAGATCGAAGACACTATCCTATCTCACTGAA
** ** ** * *
32791921 GTTACAGTGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATT
64 GTTACAGTGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-T
* * * * * * * * *
32791985 GA-AGCCAGAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTC-AAG-A---CACTATCCTA
125 CACA-TCAG-G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGA-CCGAAGAATTTCA-AATCTTA
* * * * * *
32792044 TCTCCCTGAAGTTACAGTAGAGTAGATCGTA-TC
185 TCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCC
* * * * * *
32792077 AG-G-TCGTATCTTCCTGAGATTACAGCAGAGTAGATTGAAG-CTAGTAATCCTATCTCCCTG-A
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGAC-ACT-ATCCTATCTCACTGAA
* ** *
32792138 GATTACAGTGGAGGGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAACAGAGTAGATCGC
64 G-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCAC
* * *
32792203 ATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATTTTATCTCCCTG
128 ATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAAATCTTATCTCCCTG
*
32792268 AGGTTACAATGGAGCAGATTGAAGCC
193 AGGTTACAGTGGAGCAGATTGAAGCC
* * * * * * *
32792294 AGAGATTTTATCTCCCTGAGATTATAACGGAGTAGATTGAAG-CTAGTAATCCTAACTCTCTGAA
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGAC-ACT-ATCCTATCTCACTGAA
*
32792358 GTTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACA
64 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACA
32792423 TCAG
129 TCAG
32792427 ATTGAAGCCG
Statistics
Matches: 843, Mismatches: 126, Indels: 63
0.82 0.12 0.06
Matches are distributed among these distances:
212 1 0.00
213 30 0.04
214 29 0.03
215 43 0.05
216 159 0.19
217 15 0.02
218 418 0.50
219 145 0.17
220 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (218 bp):
AGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCACTGAAGT
TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAAATCTTATCTCCCTGAGG
TTACAGTGGAGCAGATTGAAGCC
Found at i:32791608 original size:87 final size:85
Alignment explanation
Indices: 32791517--32792110 Score: 386
Period size: 87 Copynumber: 6.9 Consensus size: 85
32791507 AAAATAAAAG
* *
32791517 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATT-ACATCAGGTCTTATCTCCCTGAGGTTACAG
1 ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGA-ATCAGGTCTTATCTCCCTGAGGTTACAG
* *
32791581 TGGAGTTGACCGAAGAATTTTAA
65 TGGAGTAGACC-AAGAA-TTCAA
* * * * *
32791604 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAGATTAC
1 ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAA-TCAG-G-TCTTATCTCCCTGAGGTTAC
*
32791669 AGTGGAGTAGATCCAAG-A--CACT
63 AGTGGAGTAGA-CCAAGAATTCA-A
* * * * * *
32791691 ATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
1 ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATT-GAAT-CAGG-TCTTATCTCCCTGAGGTTAC
* * * *
32791756 AGTAGAGTAGATC--GTA-TCAG
63 AGTGGAGTAGACCAAGAATTCAA
* * * * * *
32791776 GTCTTATCTCCCTG-AGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 ATCTTATCTCCCTGAAG-TTACAGTAGAGCAGATTGAATC-AG--GTCTTATCTCCCTGAGGTTA
* * ** *
32791840 TAGTGGAGCAGATTAA-AA-TAAA
62 CAGTGGAGTAGACCAAGAATTCAA
* * * * * * *
32791862 GGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACA
1 --ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAATCAGGTCTTATCTCCCTGAGGTTACA
*
32791927 GTGGAGTAGACCGAAGAATTTCAG
64 GTGGAGTAGACC-AAGAA-TTCAA
* * *
32791951 ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAA-TCAG-G-TCTTATCTCCCTGAGGTTAC
* * * *
32792016 AGCGGAGCAGATTCAAG-A--CACT
63 AGTGGAGTAGA-CCAAGAATTCA-A
* * * * * * * *
32792038 ATCCTATCTCCCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCGTATCTTCCTGAGATTACAGC
1 ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAATCAGGTCTTATCTCCCTGAGGTTACAGT
*
32792103 AGAGTAGA
66 GGAGTAGA
32792111 TTGAAGCTAG
Statistics
Matches: 397, Mismatches: 82, Indels: 59
0.74 0.15 0.11
Matches are distributed among these distances:
84 33 0.08
85 82 0.21
86 14 0.04
87 159 0.40
88 38 0.10
89 8 0.02
90 60 0.15
91 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (85 bp):
ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAATCAGGTCTTATCTCCCTGAGGTTACAGT
GGAGTAGACCAAGAATTCAA
Found at i:32791851 original size:129 final size:128
Alignment explanation
Indices: 32791604--32791984 Score: 437
Period size: 129 Copynumber: 2.9 Consensus size: 128
32791594 AGAATTTTAA
* * * * * * *
32791604 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCTTGAGATTAC
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAA-TCAG-G-TCTTATCTCCCTGAGATTAC
*
32791669 AGTGGAGTAGATCCAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAG
63 AGTGGAGCAGATCCAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAG
32791734 G
128 G
*
32791735 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGT
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTGAGATTACAGT
** * *
32791800 GGAGCAGATTGAAG-CTAGTAATCCTATCTCCCTG-AGATTATAGTGGAGCAGATTAAAATAAAG
66 GGAGCAGATCCAAGAC-ACT-ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAAAG
32791863 G
128 G
* * * * *
32791864 ATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACAGT
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTGAGATTACAGT
* * * *
32791929 GGAGTAGA-CCGAAGA-ATTTCAGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATT
66 GGAGCAGATCC-AAGACA---C-TATCCTATCTCCCTGAAGTTACAGTGGAGCAGATT
32791985 GAAGCCAGAG
Statistics
Matches: 214, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
127 1 0.00
128 38 0.18
129 111 0.52
130 3 0.01
131 59 0.28
132 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (128 bp):
ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGGTCTTATCTCCCTGAGATTACAGT
GGAGCAGATCCAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGG
Found at i:32792055 original size:303 final size:303
Alignment explanation
Indices: 32791695--32792552 Score: 1053
Period size: 303 Copynumber: 2.8 Consensus size: 303
32791685 GACACTATCC
* * * * *
32791695 TATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGT
1 TATCTCCCT-AAGATTACAGCGGAGCAGATT-AAAGACAGTATCCTATCTCTCTGAAGTTACAGT
32791759 AGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCC
64 AGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCC
* *
32791824 TATCTCCCTGAGATTATAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCA
129 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCA
* * *
32791889 AAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATC
194 GAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATC
*
32791954 TTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCCAGAGATCT
259 TTATCTCCCTGAAGTTACAATAGAGCAGATTGAAGCCAGAGATCT
* * *
32791999 TATCTCCCTAAGATTACAGCGGAGCAGATTCAAGACACTATCCTATCTCCCTGAAGTTACAGTAG
1 TATCTCCCTAAGATTACAGCGGAGCAGATTAAAGACAGTATCCTATCTCTCTGAAGTTACAGTAG
* * ** *
32792064 AGTAGATCGTATCAGGTCGTATCTTCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTAATCCTA
66 AGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTA
* *
32792129 TCTCCCTGAGATTACAGTGGAGGGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAACAGA
131 TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGA
*
32792194 GTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATTTT
196 GTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
* * *
32792259 ATCTCCCTGAGGTTACAATGGAGCAGATTGAAGCCAGAGATTT
261 ATCTCCCTGAAGTTACAATAGAGCAGATTGAAGCCAGAGATCT
* * * * * *
32792302 TATCTCCCTGAGATTATAACGGAGTAGATTGAAG-CTAGTAATCCTAACTCTCTGAAGTTACAGT
1 TATCTCCCTAAGATTACAGCGGAGCAGATTAAAGAC-AGT-ATCCTATCTCTCTGAAGTTACAGT
* * *** * *
32792366 GGAGTGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCACATCAGATT
64 AGAGTAGA-TCGTAT-CAGG-TCTTATCTCCCTGAGA-TTACAGT-G-G-AG-------CAGATT
* * * * * *
32792430 GAAGC-CGATAATTCTATCTCCCTGA-AGTTGCAGTGGAGTGGATTAAAATCACA-GCTCTTATC
115 GAAGCTAG-TAATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAAT-AAAGGATCTTATC
* * * *
32792492 TCTCTGAAGTTATAGTAGAGTAGATCGCATCATGTCTTATCTCCCTGAGGTTACAATGGAG
177 TCTCTGAAGTTACAGCAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAG
32792553 CAGAATAAAG
Statistics
Matches: 478, Mismatches: 56, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
302 1 0.00
303 283 0.59
304 53 0.11
305 3 0.01
306 4 0.01
307 17 0.04
309 1 0.00
310 2 0.00
316 2 0.00
317 110 0.23
318 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (303 bp):
TATCTCCCTAAGATTACAGCGGAGCAGATTAAAGACAGTATCCTATCTCTCTGAAGTTACAGTAG
AGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTA
TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGA
GTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
ATCTCCCTGAAGTTACAATAGAGCAGATTGAAGCCAGAGATCT
Found at i:32792133 original size:347 final size:347
Alignment explanation
Indices: 32791390--32792150 Score: 1016
Period size: 347 Copynumber: 2.2 Consensus size: 347
32791380 TTTCAAATCT
* * * * *
32791390 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCTTCCTGAGATTACAGTAGAGTAGATTGAAG-CAGA-ATCTTATCTCCCTGAGATTACAGTG
* *
32791455 GAGTAGATCGAAGACACTATCCCATCTCACTGAAGTTACAGTGGAGCGGATTAAAATAAAAGATC
64 GAGCAGATCGAAGACACTATCCCATCTCACTGAAGTTACAGTGGAGCAGATTAAAATAAAAGATC
* * *
32791520 TTATCTCTCTGAAGTTACAGTAGAGTAGATTACATCAGGTCTTATCTCCCTGAGGTTACAGTGGA
129 TTATCTCTCTGAAGTTACAGCAAAGTAGATCACATCAGGTCTTATCTCCCTGAGGTTACAGTGGA
* * * *
32791585 GTTGACCGAAGAATTTTAAATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGAT
194 GTAGACCGAAGAATTTCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCCAGAGAT
* * * *
32791650 CTTATCTCCTTGAGATTACAGTGGAGTAGATCCAAGACACTATCCTATCTCCCTGAAGTTACAGT
259 CTTATCTCCCTAAGATTACAGCGGAGCAGATCCAAGACACTATCCTATCTCCCTGAAGTTACAGT
* *
32791715 GGAGCAGATTAAAATAAAGGATCT
324 AGAGCAGATTAAAATAAAGGATCG
* * * *
32791739 TATC-TCTCTGA-AGTTACAGTAGAGTAGATCGTATCAG-GTCTTATCTCCCTGAGATTACAGTG
1 TATCTTC-CTGAGA-TTACAGTAGAGTAGATTGAAGCAGAATCTTATCTCCCTGAGATTACAGTG
* * * * * *
32791801 GAGCAGATTGAAG-CTAGTAATCCTATCTCCCTG-AGATTATAGTGGAGCAGATTAAAATAAAGG
64 GAGCAGATCGAAGAC-ACT-ATCCCATCTCACTGAAG-TTACAGTGGAGCAGATTAAAATAAAAG
* *
32791864 ATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACAGT
126 ATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCACATCAGGTCTTATCTCCCTGAGGTTACAGT
*
32791929 GGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCCAGA
191 GGAGTAGACCGAAGAATTTCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCCAGA
*
32791994 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTCAAGACACTATCCTATCTCCCTGAAGTTAC
256 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATCCAAGACACTATCCTATCTCCCTGAAGTTAC
* *** *
32792059 AGTAGAGTAGA-TCGTAT-CAGG-TCG
321 AGTAGAGCAGATTAAAATAAAGGATCG
* *
32792083 TATCTTCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTG
1 TATCTTCCTGAGATTACAGTAGAGTAGATTGAAGC-AG-AATCTTATCTCCCTGAGATTACAGTG
32792148 GAG
64 GAG
32792151 GGGATTAAAA
Statistics
Matches: 357, Mismatches: 45, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
344 28 0.08
345 9 0.03
346 41 0.11
347 251 0.70
348 4 0.01
349 24 0.07
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (347 bp):
TATCTTCCTGAGATTACAGTAGAGTAGATTGAAGCAGAATCTTATCTCCCTGAGATTACAGTGGA
GCAGATCGAAGACACTATCCCATCTCACTGAAGTTACAGTGGAGCAGATTAAAATAAAAGATCTT
ATCTCTCTGAAGTTACAGCAAAGTAGATCACATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGT
AGACCGAAGAATTTCAAATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCCAGAGATCT
TATCTCCCTAAGATTACAGCGGAGCAGATCCAAGACACTATCCTATCTCCCTGAAGTTACAGTAG
AGCAGATTAAAATAAAGGATCG
Found at i:32792222 original size:129 final size:128
Alignment explanation
Indices: 32791952--32792239 Score: 328
Period size: 129 Copynumber: 2.2 Consensus size: 128
32791942 GAATTTCAGA
* *
32791952 TCTTATCTCCCTGA-AGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTAAGATTAC
1 TCTTATCTCCCTGAGA-TTACAGTAGAGTAGATTGAAGCCAGAGATCCTATCTCCCTAAGATTAC
* * * ** * *
32792016 AGCGGAGCAGATTCAAGACACTATCCTATCTCCCTGAAGTTACAGTAGAGTAGATCGTATCAGG
65 AGCGGAGCAGATTAAAGAAACGATCCTATCTCCCTGAAGTTACAACAGAGTAGATCGCATCAAG
* * * * *
32792080 TCGTATCTTCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTA-ATCCTATCTCCCTGAGATTAC
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGATTGAAGCCAG-AGATCCTATCTCCCTAAGATTAC
* ** * * * *
32792144 AGTGGAGGGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAACAGAGTAGATCGCATCAAG
65 AGCGGAGCAGATT-AAAGAAACGATCCTATCTCCCTGAAGTTACAACAGAGTAGATCGCATCAAG
* *
32792209 TCTTATCTCCCTGAGGTTACAGTGGAGTAGA
1 TCTTATCTCCCTGAGATTACAGTAGAGTAGA
32792240 CCGAAGAATT
Statistics
Matches: 131, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
128 63 0.48
129 68 0.52
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (128 bp):
TCTTATCTCCCTGAGATTACAGTAGAGTAGATTGAAGCCAGAGATCCTATCTCCCTAAGATTACA
GCGGAGCAGATTAAAGAAACGATCCTATCTCCCTGAAGTTACAACAGAGTAGATCGCATCAAG
Found at i:32792496 original size:98 final size:98
Alignment explanation
Indices: 32792327--32792523 Score: 281
Period size: 98 Copynumber: 2.0 Consensus size: 98
32792317 ATAACGGAGT
* *
32792327 AGATTGAAGCTAGTAATCCTAACTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAAGGATCTTA
1 AGATTGAAGCGAGTAATCCTAACTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAGGATCTTA
32792392 TCTCTCTGAAGTTACAGTAGAGTAGATCACATC
66 TCTCTCTGAAGTTACAGTAGAGTAGATCACATC
* * * * *
32792425 AGATTGAAGCCGA-TAATTCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACA-GCTCT
1 AGATTGAAG-CGAGTAATCCTAACTCCCTGAAGTTACAGTGGAGTGGATTAAAAT-AAAGGATCT
* *
32792488 TATCTCTCTGAAGTTATAGTAGAGTAGATCGCATC
64 TATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
32792523 A
1 A
32792524 TGTCTTATCT
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 84 0.95
99 4 0.05
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (98 bp):
AGATTGAAGCGAGTAATCCTAACTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAGGATCTTA
TCTCTCTGAAGTTACAGTAGAGTAGATCACATC
Found at i:32793986 original size:3 final size:3
Alignment explanation
Indices: 32793980--32794011 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32793970 TAATGTTACC
32793980 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32794012 ATTTCCATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:32794860 original size:112 final size:110
Alignment explanation
Indices: 32794501--32794922 Score: 573
Period size: 109 Copynumber: 3.8 Consensus size: 110
32794491 TTTCTAATTG
* * *
32794501 AGGCAATATTTAGCGTTTGGG-AATTCGAGAAAACGTGCCCTAAGGTGCTGAGTGTCGATTTTTC
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
* * *
32794565 TCGTTCAACCAAATAGCTGAATATCCTTTCAAAAATTTTAAAATA
66 TCGTTCAACCAAATAGCTAAATATCCTTTAAAAAATTTTCAAATA
* * * * *
32794610 AGGCAATGTTTTAC-TTTTGGAAATTCGAGAAAACATGCCTTAAGGTGCTGGGTGTCGATTTTTT
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
* **
32794674 TCGTTCAACCAAATGGCTTAAA-ATCCTTTAAAAACCTTTCAAATA
66 TCGTTCAACCAAATAGC-TAAATATCCTTTAAAAAATTTTCAAATA
* * *
32794719 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTATCAATTTTTC
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
*
32794784 TCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTCGAAATA
66 TCGTTCAACCAAATAGCTAAATATCC-TTTAAAAAATTTTC-AAATA
*
32794831 AGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGAG-GCTGGGTGTCGATTTTT
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAG-GTGCTGGGTGTCGATTTTT
* * * *
32794895 CTCATTTAACCGAATAGCCAAATATCCT
65 CTCGTTCAACCAAATAGCTAAATATCCT
32794923 CTTGAATTTC
Statistics
Matches: 273, Mismatches: 33, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
108 5 0.02
109 102 0.37
110 67 0.25
111 13 0.05
112 85 0.31
113 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (110 bp):
AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
TCGTTCAACCAAATAGCTAAATATCCTTTAAAAAATTTTCAAATA
Found at i:32795934 original size:29 final size:29
Alignment explanation
Indices: 32795899--32795956 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
32795889 AACTAAACAT
32795899 ACCTAGGGAATTACAATTTCTTCTAATTA
1 ACCTAGGGAATTACAATTTCTTCTAATTA
32795928 ACCTAGGGAATTACAATTTCTTCTAATTA
1 ACCTAGGGAATTACAATTTCTTCTAATTA
32795957 CAAGAGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.38
Consensus pattern (29 bp):
ACCTAGGGAATTACAATTTCTTCTAATTA
Found at i:32798792 original size:20 final size:20
Alignment explanation
Indices: 32798769--32798811 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
32798759 TTTTCTCCTT
*
32798769 CTTTCAACTTT-TTTTCTTTG
1 CTTTCAA-TTTCTATTCTTTG
*
32798789 CTTTCTATTTCTATTCTTTG
1 CTTTCAATTTCTATTCTTTG
32798809 CTT
1 CTT
32798812 ATCATCACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.09, C:0.21, G:0.05, T:0.65
Consensus pattern (20 bp):
CTTTCAATTTCTATTCTTTG
Found at i:32799156 original size:7 final size:7
Alignment explanation
Indices: 32799146--32799174 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
32799136 TCACCCAAAA
32799146 CCCCTTC
1 CCCCTTC
32799153 CCCCTTC
1 CCCCTTC
32799160 CCCCTTC
1 CCCCTTC
32799167 CCCCTTC
1 CCCCTTC
32799174 C
1 C
32799175 TTTTGCTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.72, G:0.00, T:0.28
Consensus pattern (7 bp):
CCCCTTC
Found at i:32804334 original size:72 final size:72
Alignment explanation
Indices: 32804246--32804389 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
32804236 GGGCATATAA
32804246 TAACAATGGAATTTAATAATAACAGCAATAACATTAAATTTATTAAAATAAAATGAAAGTCACGA
1 TAACAATGGAATTTAATAATAACAGCAATAACATTAAATTTATTAAAATAAAATGAAAGTCACGA
32804311 AAAGGGG
66 AAAGGGG
32804318 TAACAATGGAATTTAATAATAACAGCAATAACATTAAATTTATTAAAATAAAATGAAAGTCACGA
1 TAACAATGGAATTTAATAATAACAGCAATAACATTAAATTTATTAAAATAAAATGAAAGTCACGA
32804383 AAAGGGG
66 AAAGGGG
32804390 GCTTAATTAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.25
Consensus pattern (72 bp):
TAACAATGGAATTTAATAATAACAGCAATAACATTAAATTTATTAAAATAAAATGAAAGTCACGA
AAAGGGG
Found at i:32821993 original size:22 final size:22
Alignment explanation
Indices: 32821968--32822014 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
32821958 TTTTTACTTC
* *
32821968 TATTTTACTGCCATTTTGCTAT
1 TATTTTACTACCATTATGCTAT
*
32821990 TATTTTGCTACCATTATGCTAT
1 TATTTTACTACCATTATGCTAT
32822012 TAT
1 TAT
32822015 ATCTGTACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53
Consensus pattern (22 bp):
TATTTTACTACCATTATGCTAT
Found at i:32823246 original size:21 final size:20
Alignment explanation
Indices: 32823207--32823246 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
32823197 CCTATCCTTA
*
32823207 TTTTTATTTTTAAGGTTAAG
1 TTTTTATTTTTAACGTTAAG
*
32823227 TTTTTATCTTTTAACTTTAA
1 TTTTTAT-TTTTAACGTTAA
32823247 AATGTTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62
Consensus pattern (20 bp):
TTTTTATTTTTAACGTTAAG
Found at i:32834853 original size:20 final size:20
Alignment explanation
Indices: 32834828--32834867 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32834818 CGTAAAATGA
*
32834828 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
32834848 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
32834868 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:32834857 original size:34 final size:35
Alignment explanation
Indices: 32834813--32834879 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32834803 CAGTAAAATA
*
32834813 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
32834847 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
32834880 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:32834883 original size:14 final size:15
Alignment explanation
Indices: 32834807--32834883 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32834797 GATTGCCAGT
* *
32834807 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
32834821 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
32834835 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
32834855 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
32834870 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
32834884 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:32837429 original size:3 final size:3
Alignment explanation
Indices: 32837421--32837457 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
32837411 AATCATGCCA
32837421 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
32837458 GAATATTACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:32849462 original size:20 final size:19
Alignment explanation
Indices: 32849415--32849462 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
32849405 TTTAATTTAA
*
32849415 CAAGTATCGATACCTTGCT
1 CAAGTATCAATACCTTGCT
* *
32849434 GAAGGTATCAATACCTTTCT
1 CAA-GTATCAATACCTTGCT
32849454 CAAGATATC
1 CAAG-TATC
32849463 GGTACTTTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (19 bp):
CAAGTATCAATACCTTGCT
Found at i:32857112 original size:10 final size:11
Alignment explanation
Indices: 32857081--32857110 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
32857071 CTAATTTTAA
32857081 TTAAATAAATTC
1 TTAAA-AAATTC
32857093 TTAAAAAATTC
1 TTAAAAAATTC
32857104 TTAAAAA
1 TTAAAAA
32857111 TTAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (11 bp):
TTAAAAAATTC
Found at i:32860570 original size:15 final size:16
Alignment explanation
Indices: 32860550--32860580 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32860540 ATTTGTTTTT
32860550 ATATAAAAAA-TAATA
1 ATATAAAAAATTAATA
32860565 ATATAAAAAATTAATA
1 ATATAAAAAATTAATA
32860581 CGAACTGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATATAAAAAATTAATA
Found at i:32868129 original size:16 final size:16
Alignment explanation
Indices: 32868108--32868162 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
32868098 GTTTGGTTCA
32868108 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
32868124 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
32868140 CTGTAATGGAATAAAG
1 CTGTAATGGAATAGAG
32868156 CTGTAAT
1 CTGTAAT
32868163 CAGTAACTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:32868450 original size:58 final size:58
Alignment explanation
Indices: 32868318--32868456 Score: 190
Period size: 58 Copynumber: 2.4 Consensus size: 58
32868308 TATTGGTATT
* *
32868318 AAATTTTAATAAGATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACC
1 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACA
* * * * * *
32868376 ATATTTTAACATAATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATA
1 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACA
32868433 AAATTCTTAATAAAATTATTATTA
1 AAATT-TTAATAAAATTATTATTA
32868457 TATGAATTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
57 22 0.32
58 47 0.68
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (58 bp):
AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACA
Found at i:32870222 original size:23 final size:23
Alignment explanation
Indices: 32870178--32870222 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32870168 CAGTAATTTG
* *
32870178 CAACACTTTAACATCTCTATTAA
1 CAACACTTTAACACCTCAATTAA
32870201 CAACA-TTTATACACCTCAATTA
1 CAACACTTTA-ACACCTCAATTA
32870223 CAGCAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (23 bp):
CAACACTTTAACACCTCAATTAA
Found at i:32870308 original size:23 final size:23
Alignment explanation
Indices: 32870200--32870365 Score: 65
Period size: 23 Copynumber: 7.3 Consensus size: 23
32870190 ATCTCTATTA
* *
32870200 ACAACATTTATACACCTCAA-TT
1 ACAACATTTAAACACTTCAATTT
* * *
32870222 ACAGCAATAAAACA-TCTCAATTT
1 ACAACATTTAAACACT-TCAATTT
* * ** *
32870245 CCAGCAACTAAACAATTCAATTT
1 ACAACATTTAAACACTTCAATTT
* *
32870268 GCGATAC-TTAAAACACTTCAATTT
1 AC-A-ACATTTAAACACTTCAATTT
*
32870292 ACAACATTTAAACACTTTAATTT
1 ACAACATTTAAACACTTCAATTT
** * * *
32870315 GTAGCACTTT-AACA-TCTCTATTA
1 ACAACA-TTTAAACACT-TCAATTT
* *
32870338 ACAACATTTATACACCTCAA-TT
1 ACAACATTTAAACACTTCAATTT
32870360 ACAACA
1 ACAACA
32870366 ATAAAATATC
Statistics
Matches: 104, Mismatches: 30, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
22 27 0.26
23 57 0.55
24 19 0.18
25 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.04, T:0.31
Consensus pattern (23 bp):
ACAACATTTAAACACTTCAATTT
Found at i:32870419 original size:138 final size:138
Alignment explanation
Indices: 32870171--32870434 Score: 467
Period size: 138 Copynumber: 1.9 Consensus size: 138
32870161 AGAGCTTCAG
*
32870171 TAATTTGCAACACTTTAACATCTCTATTAACAACATTTATACACCTCAATTACAGCAATAAAACA
1 TAATTTGCAACACTTTAACATCTCTATTAACAACATTTATACACCTCAATTACAACAATAAAACA
32870236 TCTCAATTTCCAGCAACTAAACAATTCAATTTGCGATACTTAAAACACTTCAATTTACAACATTT
66 TCTCAATTTCCAGCAACTAAACAATTCAATTTGCGATACTTAAAACACTTCAATTTACAACATTT
32870301 AAACACTT
131 AAACACTT
* * *
32870309 TAATTTGTAGCACTTTAACATCTCTATTAACAACATTTATACACCTCAATTACAACAATAAAATA
1 TAATTTGCAACACTTTAACATCTCTATTAACAACATTTATACACCTCAATTACAACAATAAAACA
*
32870374 TCTCAATTTCCAGCAACTAAATAATTCAATTTGC-AGTACTTAAAACACTTCAATTTACAAC
66 TCTCAATTTCCAGCAACTAAACAATTCAATTTGCGA-TACTTAAAACACTTCAATTTACAAC
32870435 TTAAGACAGA
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
137 1 0.01
138 119 0.99
ACGTcount: A:0.41, C:0.22, G:0.04, T:0.33
Consensus pattern (138 bp):
TAATTTGCAACACTTTAACATCTCTATTAACAACATTTATACACCTCAATTACAACAATAAAACA
TCTCAATTTCCAGCAACTAAACAATTCAATTTGCGATACTTAAAACACTTCAATTTACAACATTT
AAACACTT
Found at i:32873121 original size:28 final size:28
Alignment explanation
Indices: 32873064--32873125 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
32873054 ATGTTCTGTT
** *
32873064 GAACTTAACTTGTATTTACTGTCCCGAC
1 GAACTTAACCCGTATTTACTGTCCCAAC
**
32873092 GAACTTAACCCGTATTTACTGTCTTAAC
1 GAACTTAACCCGTATTTACTGTCCCAAC
32873120 GAACTT
1 GAACTT
32873126 TATTTGTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.35
Consensus pattern (28 bp):
GAACTTAACCCGTATTTACTGTCCCAAC
Found at i:32873340 original size:51 final size:51
Alignment explanation
Indices: 32873276--32873417 Score: 140
Period size: 51 Copynumber: 2.8 Consensus size: 51
32873266 TGTACCATGC
* * * *
32873276 TGCCATGGTGTCTTTCATCCATGGTCTTACACTACGTACCTCATACCAAAT
1 TGCCATAGCGTCTTTCATCCATGGTCTTACACTACATACCTCATACCAAAG
** * * * *
32873327 TGCCATAGCGTCTTTCATATATGGTCTTACACTATATACCTTATACTAGAG
1 TGCCATAGCGTCTTTCATCCATGGTCTTACACTACATACCTCATACCAAAG
* * * * * *
32873378 TACCATAACATTTTTCATCCATGGTCTTACGCTATATACC
1 TGCCATAGCGTCTTTCATCCATGGTCTTACACTACATACC
32873418 GTCGTCATGG
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 74 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (51 bp):
TGCCATAGCGTCTTTCATCCATGGTCTTACACTACATACCTCATACCAAAG
Found at i:32874636 original size:2 final size:2
Alignment explanation
Indices: 32874629--32874653 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32874619 CAAACGTGTG
32874629 CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA C
32874654 TCTATCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:32877648 original size:21 final size:21
Alignment explanation
Indices: 32877578--32877646 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
32877568 ATTGGGTGAA
* *
32877578 TTAGCTCTTATGAGCTTCTGT
1 TTAGCTCTTACGAGTTTCTGT
* *
32877599 TTAGCTCTTACGAGTTACAGT
1 TTAGCTCTTACGAGTTTCTGT
* * *
32877620 TCAGCTTTTACGAGTTTTTGT
1 TTAGCTCTTACGAGTTTCTGT
32877641 TTAGCT
1 TTAGCT
32877647 TTCAAGCTTC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.46
Consensus pattern (21 bp):
TTAGCTCTTACGAGTTTCTGT
Found at i:32882748 original size:62 final size:62
Alignment explanation
Indices: 32882651--32882771 Score: 233
Period size: 62 Copynumber: 2.0 Consensus size: 62
32882641 TACGCATGGT
*
32882651 CAGTCGCTAACTTAGGATTTAGGTAAATCACACCATGGATGTCATAAGTGAATTAATTCGGC
1 CAGTCGCTAACTTAGGATTTAGGTAAATCACACCATGGATGTCACAAGTGAATTAATTCGGC
32882713 CAGTCGCTAACTTAGGATTTAGGTAAATCACACCATGGATGTCACAAGTGAATTAATTC
1 CAGTCGCTAACTTAGGATTTAGGTAAATCACACCATGGATGTCACAAGTGAATTAATTC
32882772 ACAAACAGAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (62 bp):
CAGTCGCTAACTTAGGATTTAGGTAAATCACACCATGGATGTCACAAGTGAATTAATTCGGC
Found at i:32883330 original size:28 final size:28
Alignment explanation
Indices: 32883290--32883344 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
32883280 TAATATACTT
32883290 ACATTTTACTTGCCTAATGTTTTGATCC
1 ACATTTTACTTGCCTAATGTTTTGATCC
*
32883318 ACATTTTACTTGCCTAGTGTTTTGATC
1 ACATTTTACTTGCCTAATGTTTTGATC
32883345 AATGTCTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (28 bp):
ACATTTTACTTGCCTAATGTTTTGATCC
Found at i:32888880 original size:28 final size:28
Alignment explanation
Indices: 32888823--32888882 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
32888813 TCATAGGAAT
*
32888823 TAATAGGATAAAATAAATAATTAGTTAA
1 TAATAGGATAAAATAAATAATTAATTAA
*
32888851 TAATAGTA-AAAAT-AATAATTAAATTAAA
1 TAATAGGATAAAATAAATAATT-AATT-AA
32888879 TAAT
1 TAAT
32888883 TATGGTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 7 0.25
27 8 0.29
28 13 0.46
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (28 bp):
TAATAGGATAAAATAAATAATTAATTAA
Found at i:32900353 original size:33 final size:33
Alignment explanation
Indices: 32900284--32900638 Score: 145
Period size: 33 Copynumber: 10.5 Consensus size: 33
32900274 ATAAAAAGGG
*
32900284 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
*
32900311 GGTTGCTAAGTGTTGATTCCCCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* *
32900344 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CC-TA--TT-CAT-T---GGT
*
32900386 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* * *
32900413 GGTTGCTAAGTGCTGATTCCTCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* *
32900446 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CC-TA--TT-CAT-T---GGT
32900488 GGTTGCTAAGTGCTGATTCCCC----CGA--GG-
1 GGTTGCTAAGTGCTGATTCCCCTATTC-ATTGGT
* *
32900515 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* * ** * *
32900548 GGTTGCTAACTACTGAACCCACCGTATCATAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-TAT--T-CAT-TG---GT
* *
32900590 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
32900623 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
32900639 ATCCACCGAT
Statistics
Matches: 250, Mismatches: 31, Indels: 88
0.68 0.08 0.24
Matches are distributed among these distances:
27 64 0.26
28 4 0.02
30 1 0.00
31 5 0.02
32 6 0.02
33 73 0.29
34 6 0.02
35 4 0.02
36 2 0.01
37 6 0.02
38 7 0.03
39 4 0.02
40 1 0.00
41 6 0.02
42 61 0.24
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
Found at i:32900406 original size:102 final size:102
Alignment explanation
Indices: 32900279--32900611 Score: 558
Period size: 102 Copynumber: 3.3 Consensus size: 102
32900269 ATTGAATAAA
* * *
32900279 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCTATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
32900344 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
* *
32900381 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCTCGACTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
32900446 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
*
32900483 AAGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * ** *
32900548 GGTTGCTAACTACTGAACCCACCGTATCATAAATGTG
66 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
*
32900585 AAAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
32900612 GACTCATTGG
Statistics
Matches: 218, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 218 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
Found at i:32900420 original size:27 final size:31
Alignment explanation
Indices: 32900384--32900465 Score: 109
Period size: 27 Copynumber: 2.7 Consensus size: 31
32900374 AAATGTGAAG
32900384 GGGGTTGCTAAGTGCTGATTCC-C-C-CA-A
1 GGGGTTGCTAAGTGCTGATTCCTCACTCATA
*
32900411 GGGGTTGCTAAGTGCTGATTCCTCGACTCATT
1 GGGGTTGCTAAGTGCTGATTCCTC-ACTCATA
32900443 GGTGGTTGCTAAGTGCTGATTCC
1 GG-GGTTGCTAAGTGCTGATTCC
32900466 ACCGTATCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
27 22 0.46
28 1 0.02
30 1 0.02
31 2 0.04
32 2 0.04
33 20 0.42
ACGTcount: A:0.16, C:0.22, G:0.30, T:0.32
Consensus pattern (31 bp):
GGGGTTGCTAAGTGCTGATTCCTCACTCATA
Found at i:32904208 original size:24 final size:25
Alignment explanation
Indices: 32904163--32904209 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
32904153 AATAATTCTC
*
32904163 TTTGAGTTTTTCTTCAAGAATTGCT
1 TTTGAGTTTTTCTTCAACAATTGCT
32904188 TTTGAGTTTCTT-TTC-ACAATTG
1 TTTGAGTTT-TTCTTCAACAATTG
32904210 ATTTATGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 6 0.30
25 12 0.60
26 2 0.10
ACGTcount: A:0.19, C:0.13, G:0.15, T:0.53
Consensus pattern (25 bp):
TTTGAGTTTTTCTTCAACAATTGCT
Found at i:32904214 original size:79 final size:79
Alignment explanation
Indices: 32904123--32904280 Score: 280
Period size: 79 Copynumber: 2.0 Consensus size: 79
32904113 CCGTTATACA
* * *
32904123 CACAATTTATTTATGTTTTCTTGAGTTAATAATAATTCTCTTTGAGTTTTTCTTCAAGAATTGCT
1 CACAATTGATTTATGTTTTATTGAGTTAATAATAATTCTCTTTGAATTTTTCTTCAAGAATTGCT
*
32904188 TTTGAGTTTCTTTT
66 CTTGAGTTTCTTTT
32904202 CACAATTGATTTATGTTTTATTGAGTTAATAATAATTCTCTTTGAATTTTTCTTCAAGAATTGCT
1 CACAATTGATTTATGTTTTATTGAGTTAATAATAATTCTCTTTGAATTTTTCTTCAAGAATTGCT
32904267 CTTGAGTTTCTTTT
66 CTTGAGTTTCTTTT
32904281 AGAAGCTGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.53
Consensus pattern (79 bp):
CACAATTGATTTATGTTTTATTGAGTTAATAATAATTCTCTTTGAATTTTTCTTCAAGAATTGCT
CTTGAGTTTCTTTT
Found at i:32906061 original size:21 final size:21
Alignment explanation
Indices: 32906035--32906083 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
32906025 TATACTTGGA
32906035 TCCAGTCCAATATCCTGTCAG
1 TCCAGTCCAATATCCTGTCAG
* * *
32906056 TCCAGTCTAATGTCCTGTTAG
1 TCCAGTCCAATATCCTGTCAG
32906077 TCCAGTC
1 TCCAGTC
32906084 AGTTACATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.31, G:0.16, T:0.33
Consensus pattern (21 bp):
TCCAGTCCAATATCCTGTCAG
Found at i:32906944 original size:32 final size:33
Alignment explanation
Indices: 32906902--32906963 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
32906892 AAACCCCTTT
32906902 TAAAAGTATCCCACAAAATCCTAATCAATCTCA
1 TAAAAGTATCCCACAAAATCCTAATCAATCTCA
* *
32906935 TAAAA-TATCCTATAAAATCCTAATCAATC
1 TAAAAGTATCCCACAAAATCCTAATCAATC
32906964 CCTAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.47, C:0.24, G:0.02, T:0.27
Consensus pattern (33 bp):
TAAAAGTATCCCACAAAATCCTAATCAATCTCA
Found at i:32906972 original size:32 final size:32
Alignment explanation
Indices: 32906902--32906973 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
32906892 AAACCCCTTT
* *
32906902 TAAAAGTATCCCACAAAATCCTAATCAATCTC
1 TAAAAATATCCCACAAAATCCTAATCAATCCC
* *
32906934 -ATAAAATATCCTATAAAATCCTAATCAATCCC
1 TA-AAAATATCCCACAAAATCCTAATCAATCCC
32906966 TAAAAATA
1 TAAAAATA
32906974 GAGTTTCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
31 1 0.03
32 32 0.94
33 1 0.03
ACGTcount: A:0.49, C:0.24, G:0.01, T:0.26
Consensus pattern (32 bp):
TAAAAATATCCCACAAAATCCTAATCAATCCC
Found at i:32912556 original size:12 final size:11
Alignment explanation
Indices: 32912530--32912555 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32912520 TCAAATATTC
32912530 AAAATATTTTT
1 AAAATATTTTT
32912541 AAAATATTTTT
1 AAAATATTTTT
32912552 AAAA
1 AAAA
32912556 AAGATTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:32917562 original size:67 final size:66
Alignment explanation
Indices: 32917443--32917728 Score: 254
Period size: 67 Copynumber: 4.3 Consensus size: 66
32917433 GAGGTATAAG
* * * * ** *** *
32917443 GTGTAAGACCACAACTCGAATATGGCAGCATAAAGAGTCCACCAAGATAGTAAACATGAGGTATG
1 GTGTAAGACCATAGCTCGACTATGGCAGCATAGAGAGTCTGCTGGGACAGTAAACATG-GGTATG
32917508 TT
65 TT
* * * * * * *
32917510 ATGTATGATCATAGTTCGGCTATGGCAGCATAGAGAGTCTG-TCGGGAGAGTAAACACGGGGTAT
1 GTGTAAGACCATAGCTCGACTATGGCAGCATAGAGAGTCTGCT-GGGACAGTAAACA-TGGGTAT
32917574 GTT
64 GTT
* * * *
32917577 GCGTAAGACCAAAGCTCGACTATGGCAACATAGAGAGTCTGCTGGGACAATAAACATGGTGTATG
1 GTGTAAGACCATAGCTCGACTATGGCAGCATAGAGAGTCTGCTGGGACAGTAAACATGG-GTATG
32917642 TT
65 TT
* * ** *
32917644 GTGTAAGACCATAGCTCGACTATGGCAGCATAAAAAGT-TCGCCAGGACAATAAACACAT-GGTA
1 GTGTAAGACCATAGCTCGACTATGGCAGCATAGAGAGTCT-GCTGGGACAGT-AA-ACATGGGTA
32917707 TGTT
63 TGTT
32917711 GTGTAAGACCATAGCTCG
1 GTGTAAGACCATAGCTCG
32917729 CCTACGACGG
Statistics
Matches: 178, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
66 3 0.02
67 166 0.93
68 5 0.03
69 4 0.02
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (66 bp):
GTGTAAGACCATAGCTCGACTATGGCAGCATAGAGAGTCTGCTGGGACAGTAAACATGGGTATGT
T
Found at i:32917743 original size:134 final size:134
Alignment explanation
Indices: 32917493--32917736 Score: 294
Period size: 134 Copynumber: 1.8 Consensus size: 134
32917483 ACCAAGATAG
* * * * * * * * *
32917493 TAAACATGAGGTATGTTATGTATGATCATAGTTCGGCTATGGCAGCATAGAGAGTCTGTCGGGAG
1 TAAACATGAGGTATGTTATGTAAGACCATAGCTCGACTATGGCAGCATAAAAAGTCTGCCAGGAC
* * * *
32917558 AGTAAACACGGGGTATGTTGCGTAAGACCAAAGCTCGACTATGGCAACATAGAGAGTCTGCTGGG
66 AATAAACACAGGGTATGTTGCGTAAGACCAAAGCTCGACTACGACAACATAGAGAGTCTGCTGGG
32917623 ACAA
131 ACAA
*
32917627 TAAACATG-GTGTATGTTGTGTAAGACCATAGCTCGACTATGGCAGCATAAAAAGT-TCGCCAGG
1 TAAACATGAG-GTATGTTATGTAAGACCATAGCTCGACTATGGCAGCATAAAAAGTCT-GCCAGG
* * * *
32917690 ACAATAAACACATGGTATGTTGTGTAAGACCATAGCTCGCCTACGAC
64 ACAATAAACACAGGGTATGTTGCGTAAGACCAAAGCTCGACTACGAC
32917737 GGCATAGTGT
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
133 2 0.02
134 88 0.98
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (134 bp):
TAAACATGAGGTATGTTATGTAAGACCATAGCTCGACTATGGCAGCATAAAAAGTCTGCCAGGAC
AATAAACACAGGGTATGTTGCGTAAGACCAAAGCTCGACTACGACAACATAGAGAGTCTGCTGGG
ACAA
Found at i:32929362 original size:3 final size:3
Alignment explanation
Indices: 32929356--32929385 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
32929346 AATAATAATA
*
32929356 ATT ATT ATT ATA ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32929386 TATTCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:32929368 original size:12 final size:12
Alignment explanation
Indices: 32929353--32929385 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
32929343 AATAATAATA
32929353 ATAATTATTATT
1 ATAATTATTATT
32929365 ATAATTATTATT
1 ATAATTATTATT
*
32929377 ATTATTATT
1 ATAATTATT
32929386 TATTCATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
ATAATTATTATT
Found at i:32934759 original size:14 final size:14
Alignment explanation
Indices: 32934740--32934769 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32934730 AATGAAAAAC
32934740 GCAAATAATCATTG
1 GCAAATAATCATTG
*
32934754 GCAAATAGTCATTG
1 GCAAATAATCATTG
32934768 GC
1 GC
32934770 TTCATTGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (14 bp):
GCAAATAATCATTG
Found at i:32939359 original size:46 final size:46
Alignment explanation
Indices: 32939292--32939383 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
32939282 TTATTTGGTG
32939292 CATTGTTAGTGGAGTTTTTAAACTCGTCAAAATTTTTTATAAAGTA
1 CATTGTTAGTGGAGTTTTTAAACTCGTCAAAATTTTTTATAAAGTA
32939338 CATTGTTAGTGGAGTTTTTAAACTCGTCAAAATTTTTTATAAAGTA
1 CATTGTTAGTGGAGTTTTTAAACTCGTCAAAATTTTTTATAAAGTA
32939384 TAGTAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (46 bp):
CATTGTTAGTGGAGTTTTTAAACTCGTCAAAATTTTTTATAAAGTA
Found at i:32945506 original size:20 final size:20
Alignment explanation
Indices: 32945483--32945549 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
32945473 AAATAAGTTT
*
32945483 AATAAAATGGAAATTTATTG
1 AATAAATTGGAAATTTATTG
32945503 AATAAATTGGAAATTTATTG
1 AATAAATTGGAAATTTATTG
* *
32945523 AATAAATTAGAATTTTATTG
1 AATAAATTGGAAATTTATTG
32945543 AATAAAT
1 AATAAAT
32945550 AAAAGGAACA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (20 bp):
AATAAATTGGAAATTTATTG
Found at i:32968027 original size:16 final size:16
Alignment explanation
Indices: 32968008--32968038 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32967998 ACTTCTCATC
*
32968008 ATTCTCTCATCTCTCA
1 ATTCTCTCAACTCTCA
32968024 ATTCTCTCAACTCTC
1 ATTCTCTCAACTCTC
32968039 TTAGCTCTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.39, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTCTCTCAACTCTCA
Found at i:32975063 original size:51 final size:52
Alignment explanation
Indices: 32975003--32975103 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 52
32974993 AAGGTGGAAG
* * *
32975003 CAGTGGCAGTATATCTGCAATTCAGTTGTGGCTTGTCCAC-ATTAGTGTTAT
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAATAGTGTTAT
*
32975054 CAGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAATAGTGTT
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAATAGTGTT
32975104 TTGGATGGAC
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
51 37 0.82
52 8 0.18
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (52 bp):
CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAATAGTGTTAT
Done.