Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 110 of 170
Found at i:33992051 original size:32 final size:32
Alignment explanation
Indices: 33992007--33992078 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
33991997 CACAAGAATA
*
33992007 CTATTACGCCTCTATTCCATTACAGCTATATT
1 CTATTACACCTCTATTCCATTACAGCTATATT
*
33992039 CTATTACACCTCTATTCCATTACAGCTCTATT
1 CTATTACACCTCTATTCCATTACAGCTATATT
*
33992071 CCATTACA
1 CTATTACA
33992079 ACGAATCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.26, C:0.31, G:0.04, T:0.39
Consensus pattern (32 bp):
CTATTACACCTCTATTCCATTACAGCTATATT
Found at i:34012279 original size:12 final size:12
Alignment explanation
Indices: 34012264--34012301 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
34012254 ACTAATAGTT
*
34012264 ATAATAACATTA
1 ATAATAACAATA
34012276 ATAATAACAATA
1 ATAATAACAATA
34012288 ATAATGAA-AATA
1 ATAAT-AACAATA
34012300 AT
1 AT
34012302 TGAGTAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 22 0.92
13 2 0.08
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (12 bp):
ATAATAACAATA
Found at i:34013829 original size:43 final size:43
Alignment explanation
Indices: 34013757--34013923 Score: 120
Period size: 43 Copynumber: 3.8 Consensus size: 43
34013747 ATCTGTTATT
* * * * *
34013757 TTCAACCTACTCCACTGCTGCTCACGGAGACAAGACTGAGGTC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGACAAGACTGAGGTC
* * ** *
34013800 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAGCTGTAATTTT
1 TTCAATCTGCTCCACTACTGCTTAGGGAGACAAGA-CTG--AGGTC
* * * ** * *
34013846 TTTAACCTACTCCACTGTTGCTCT-GGGAGACAAGGCTGGGGTC
1 TTCAATCTGCTCCACTACTGCT-TAGGGAGACAAGACTGAGGTC
* *
34013889 TTCAATATGCTCCACTACTGCTTAGGGAGATAAGA
1 TTCAATCTGCTCCACTACTGCTTAGGGAGACAAGA
34013924 TCTGTAATTT
Statistics
Matches: 89, Mismatches: 30, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
42 1 0.01
43 54 0.61
44 3 0.03
45 3 0.03
46 27 0.30
47 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (43 bp):
TTCAATCTGCTCCACTACTGCTTAGGGAGACAAGACTGAGGTC
Found at i:34013911 original size:89 final size:87
Alignment explanation
Indices: 34013744--34013953 Score: 303
Period size: 89 Copynumber: 2.4 Consensus size: 87
34013734 ACAGGAAGAC
* * * * *
34013744 AAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCACGGAGACAAGACTGAGGTCTTCGATCTG
1 AAGAGCTGTAATTTTCAACCTACTCCACTGTTGCTCACGGAGACAAGACTGAGGTCTTCAATATG
34013809 CTCCACTACTGCTTAGGGAGAT
66 CTCCACTACTGCTTAGGGAGAT
* ** * *
34013831 AAGAGCTGTAATTTTTTTAACCTACTCCACTGTTGCTCTGGGAGACAAGGCTGGGGTCTTCAATA
1 AAGAGCTGTAA--TTTTCAACCTACTCCACTGTTGCTCACGGAGACAAGACTGAGGTCTTCAATA
34013896 TGCTCCACTACTGCTTAGGGAGAT
64 TGCTCCACTACTGCTTAGGGAGAT
*
34013920 AAGATCTGTAATTTTCAACCTACTCCACTGTTGC
1 AAGAGCTGTAATTTTCAACCTACTCCACTGTTGC
34013954 ATAGGGAGAT
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
87 31 0.28
89 78 0.72
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (87 bp):
AAGAGCTGTAATTTTCAACCTACTCCACTGTTGCTCACGGAGACAAGACTGAGGTCTTCAATATG
CTCCACTACTGCTTAGGGAGAT
Found at i:34013985 original size:44 final size:44
Alignment explanation
Indices: 34013956--34015467 Score: 2033
Period size: 44 Copynumber: 34.4 Consensus size: 44
34013946 ACTGTTGCAT
* * * * *
34013956 AGGGAGATAGGACTTACAATCTTCTACCTATTTCACTACTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * *
34014000 AGGGAGCTAGGACTTATAGTCTTCCACCTATTCCACTGCTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * *
34014044 AAGGAGCTAGGATTTACAATCTTCCACATAGTCCACTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * *
34014088 AGGGAGCTAGGATTTACAATCTTCCGCCTATTCGACTGTTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
*
34014132 AGGGAGCTAGGATTTACAATCTTTCACCTATTCCACTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* *
34014176 AGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * * * *
34014220 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGTTT
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * *
34014264 AGGGATCTAGGACTTAAAATCTTCCACCTATTCCACTGCCGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
*
34014308 AGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* *
34014352 AAGGAGCTAGGATTTACAATCTTCCACCTATTCCATTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
*
34014396 AGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * * *
34014440 AGGGAACTAGGATTTACAATCTTTCGCCTATTCCACTGTTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
*
34014484 AGGGAGCTAGGATTTACAATCTTTCACCTATTCCACTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * ** *
34014528 AGGGAGCTAGGATTTACAACCTTCCGCCTATTCCACTATTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* *
34014572 AGGGAGCTAGGATTTACAATCTTTCACCTATTCCACTGCTGCTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * **
34014616 AGGGAGCTAGGATTTACAATCTTTCGCCTATTCCACTGCTATTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * *
34014660 AGGGAGCTAGGACTTACAATCTTCAACCTATTCCACTACTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * *
34014704 AAGGAGCTAGGACTTACAGTCTTCCACCTATTCCACTGCTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
*
34014748 AGGGAGCTAGGATTTACAATCTTCCACCTCTTCCACTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
** *
34014792 AGGGAGCTAGGATTTACAATCTTCTGCCTATTCCACTGCTAGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * *
34014836 AGGGAGCTAGGATTCACAATCTTCCGCCTATTCCACTGTTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
*
34014880 AGGGAGCTAGGATTTACAATCTTCCGCCTATTCCACTGCTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
** *
34014924 AGGGAGCTAGGATTTACAATCTTCTGCCTATTCCACTGCTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * *
34014968 AGGGAGCTAGGACTTACAATCTTCAACCTATTCCACTGCTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* *
34015012 AGGGATCTAGGACTTACAATCTTCCACCTATTCCACTG-TCGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCT-GGTC
* *
34015056 AGGGAGCTAGGATTTACAATCTTTCACCTATTCCACTGCTAGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
** ** *
34015100 AATGAGCTAGGATTTACAATCTTCTGCCTATTCCACTGCTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * *
34015144 AGAGATCTAGGATTTACAATCTTCCACCCATTCCACTACTGGTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * *
34015188 AGGGAGCTAGAATTTACAATCTTCCACCTATTCCACTACTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* *
34015232 AGGGAGCTAGAACTTT-CAGTCTTCCACCTATTCCACTGCTGGTC
1 AGGGAGCTAGGA-TTTACAATCTTCCACCTATTCCACTGCTGGTC
* * * *
34015276 AGGGAGCTAGTATTTACAATCTTTCGCCTATTCCACTGCTGTTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* * *
34015320 AGGAAGCTAGGACTTT-TAGTCTTCCACCTATTCCACTGCTGGTC
1 AGGGAGCTAGGA-TTTACAATCTTCCACCTATTCCACTGCTGGTC
** **
34015364 AGGGAGCTAGGATTTACAATCTTCTGCCTATTCCACTGCTATTC
1 AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
* *
34015408 AGGGAGCTAGGACTTT-CAGTCTTCCACCTATTCCACTGCTGTTC
1 AGGGAGCTAGGA-TTTACAATCTTCCACCTATTCCACTGCTGGTC
34015452 AGGGAGCTAGGATTTA
1 AGGGAGCTAGGATTTA
34015468 TAGTTTCACC
Statistics
Matches: 1296, Mismatches: 164, Indels: 16
0.88 0.11 0.01
Matches are distributed among these distances:
43 10 0.01
44 1276 0.98
45 10 0.01
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (44 bp):
AGGGAGCTAGGATTTACAATCTTCCACCTATTCCACTGCTGGTC
Found at i:34016758 original size:15 final size:17
Alignment explanation
Indices: 34016734--34016768 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
34016724 GGCGTCTCCA
34016734 TTTTACTTTTT-ATTTT
1 TTTTACTTTTTGATTTT
34016750 TTTTA-TTTTTGATTTT
1 TTTTACTTTTTGATTTT
34016766 TTT
1 TTT
34016769 GACTCAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.11, C:0.03, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTTACTTTTTGATTTT
Found at i:34022203 original size:12 final size:12
Alignment explanation
Indices: 34022188--34022225 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
34022178 ACTAATAGTT
*
34022188 ATAATAACATTA
1 ATAATAACAATA
34022200 ATAATAACAATA
1 ATAATAACAATA
34022212 ATAATGAA-AATA
1 ATAAT-AACAATA
34022224 AT
1 AT
34022226 TGAGTAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 22 0.92
13 2 0.08
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (12 bp):
ATAATAACAATA
Found at i:34026947 original size:29 final size:30
Alignment explanation
Indices: 34026909--34026972 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
34026899 TATTAGTCTA
34026909 AATAAGTAATATAT-ATAAAATGAAAAGTTT
1 AATAAGTAATATATAATAAAAT-AAAAGTTT
* *
34026939 AATAA-TAATATATAATGATATAAAAGTTT
1 AATAAGTAATATATAATAAAATAAAAGTTT
34026968 AATAA
1 AATAA
34026973 CATATAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (30 bp):
AATAAGTAATATATAATAAAATAAAAGTTT
Found at i:34033674 original size:45 final size:45
Alignment explanation
Indices: 34033429--34033659 Score: 383
Period size: 45 Copynumber: 5.1 Consensus size: 45
34033419 TGGTAGTCCT
* * *
34033429 ACTGCTCGTAGGCTT-AATGAAATGAGAGGTGAATGTACCAGCCCC
1 ACTGCTCGTAAG-TTGAATGAATTGAGAGCTGAATGTACCAGCCCC
* *
34033474 ACAGCTCGTAAGTTGAATGAATGGAGAGCTGAATGTACCAGCCCC
1 ACTGCTCGTAAGTTGAATGAATTGAGAGCTGAATGTACCAGCCCC
*
34033519 ACTGCTCGTAAGTTGAATGAATTGAGAGCTGAATGTACCGGCCCC
1 ACTGCTCGTAAGTTGAATGAATTGAGAGCTGAATGTACCAGCCCC
*
34033564 ACTGCTCGTAGGTTGAATGAATTGAGAGCTGAATGTACCAGCCCC
1 ACTGCTCGTAAGTTGAATGAATTGAGAGCTGAATGTACCAGCCCC
34033609 ACTGCTCGTAAGTTGAATGAATTGAGAGCTGAATGTACCAGCCCC
1 ACTGCTCGTAAGTTGAATGAATTGAGAGCTGAATGTACCAGCCCC
34033654 ACTGCT
1 ACTGCT
34033660 TGTAGTCTTA
Statistics
Matches: 174, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
44 2 0.01
45 172 0.99
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (45 bp):
ACTGCTCGTAAGTTGAATGAATTGAGAGCTGAATGTACCAGCCCC
Found at i:34041350 original size:24 final size:24
Alignment explanation
Indices: 34041335--34041386 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
34041325 AATCAAAGTC
34041335 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
34041359 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
34041383 AAAT
1 AAAT
34041387 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:34045070 original size:138 final size:137
Alignment explanation
Indices: 34044815--34045235 Score: 562
Period size: 138 Copynumber: 3.1 Consensus size: 137
34044805 ATAACATAGG
34044815 TATAATTAATATAT-GAGTTTGATTCATACAAAATATCAATTGTATATATTTTA-TCGAATTTAT
1 TATAATTAATATATGGA-TTTGATTCATACAAAATAT-AATTGTATATATTTTACT-GAATTTAT
* * *
34044878 TAATATAAA-ACGTTATATTAATTAATTTCAGTCAAAATATAAAAGAAATAGAAATTAATATTTT
63 TAATATAAACA-ATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTAT
*
34044942 TTTGGAAAAAA
127 TTTGGAAAGAA
* * * * *
34044953 TACAATTAATATATGGATTTGATTCATACAAAATACTAGTTGTATATAGTTTACTAAATTAATTA
1 TATAATTAATATATGGATTTGATTCATACAAAATA-TAATTGTATATATTTTACTGAATTTATTA
* *
34045018 ATATAAACATTTATATTAATTAATTTCGGTCAAAATATTAAAA-AAATGGAAATTAATATTATTT
65 ATATAAACAATTATATTAATTAATTTCAGTCAAAATA-TAAAAGAAATGGAAATTAATATTATTT
* *
34045082 TAGAAAGAG
129 TGGAAAGAA
* *
34045091 TATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
1 TATAATTAATATATGGATTTGATTCATACAAAATA-TAATTGTATATATTTTACTGAATTTATTA
* * * * * *
34045156 ATATAAACAATTATATTAAATAATTTCAATCAAAATATAAAAGATATGAAAATTAATATTCTGTT
65 ATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTATTTT
34045221 GGAAAGAA
130 GGAAAGAA
34045229 TATAATT
1 TATAATT
34045236 TTTTTTAACT
Statistics
Matches: 247, Mismatches: 30, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
137 5 0.02
138 232 0.94
139 10 0.04
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (137 bp):
TATAATTAATATATGGATTTGATTCATACAAAATATAATTGTATATATTTTACTGAATTTATTAA
TATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTATTTTG
GAAAGAA
Found at i:34046408 original size:17 final size:17
Alignment explanation
Indices: 34046386--34046422 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
34046376 GTTGAGATAA
34046386 AAATAAATAACG-AAAAT
1 AAATAAATAA-GAAAAAT
34046403 AAATAAATAAGAAAAAT
1 AAATAAATAAGAAAAAT
34046420 AAA
1 AAA
34046423 CAGACGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (17 bp):
AAATAAATAAGAAAAAT
Found at i:34048047 original size:3 final size:3
Alignment explanation
Indices: 34048041--34048077 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
34048031 TTGATGAAAA
*
34048041 TGT TGT TGT TGT TGT TGT TGT TGT TGA TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T
34048078 TATATATGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.03, C:0.00, G:0.32, T:0.65
Consensus pattern (3 bp):
TGT
Found at i:34049582 original size:38 final size:38
Alignment explanation
Indices: 34049539--34049655 Score: 157
Period size: 38 Copynumber: 3.1 Consensus size: 38
34049529 TGAATTATAT
* * *
34049539 TGTTATTCAGGTTTTGTACCTAGTAGGCTTTGTGCCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTTGTGCCGG
*
34049577 TGTTATTCAGGCTTCGTGCCTAGCAGGCTTAT-TGCCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTT-TGTGCCGG
*
34049615 TGTTATTCAGGCTTTGTGCCCAGCAGG-TTTAGTGCCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTT-GTGCCGG
34049653 TGT
1 TGT
34049656 ATTAAAAGTT
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
36 1 0.01
37 2 0.03
38 66 0.94
39 1 0.01
ACGTcount: A:0.13, C:0.20, G:0.30, T:0.38
Consensus pattern (38 bp):
TGTTATTCAGGCTTTGTGCCTAGCAGGCTTTGTGCCGG
Found at i:34049634 original size:22 final size:22
Alignment explanation
Indices: 34049563--34049634 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
34049553 TGTACCTAGT
34049563 AGGCTTTGTGCCGGTGTTATTC
1 AGGCTTTGTGCCGGTGTTATTC
* *
34049585 AGGCTTCGTGCC-----TA-GC
1 AGGCTTTGTGCCGGTGTTATTC
34049601 AGGCTTAT-TGCCGGTGTTATTC
1 AGGCTT-TGTGCCGGTGTTATTC
34049623 AGGCTTTGTGCC
1 AGGCTTTGTGCC
34049635 CAGCAGGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
16 11 0.29
17 2 0.05
21 3 0.08
22 22 0.58
ACGTcount: A:0.11, C:0.22, G:0.31, T:0.36
Consensus pattern (22 bp):
AGGCTTTGTGCCGGTGTTATTC
Found at i:34063143 original size:15 final size:15
Alignment explanation
Indices: 34063123--34063152 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34063113 TGAACAACTG
34063123 CATAAATTATATATA
1 CATAAATTATATATA
*
34063138 CATAAATTGTATATA
1 CATAAATTATATATA
34063153 AACACCAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (15 bp):
CATAAATTATATATA
Found at i:34066309 original size:17 final size:18
Alignment explanation
Indices: 34066295--34066357 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
34066285 ATAATCTTTG
34066295 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
34066313 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
* **
34066332 TATGATATATAATCTTAGA
1 -AGGATATGCAATCTTAGA
34066351 A-GATATG
1 AGGATATG
34066358 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.12
18 1 0.03
19 34 0.85
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:34066321 original size:19 final size:19
Alignment explanation
Indices: 34066297--34066350 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
34066287 AATCTTTGAG
34066297 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34066316 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
34066335 GATATATAATCTTAGA
1 GATATGCAATCTTAGA
34066351 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:34066599 original size:21 final size:21
Alignment explanation
Indices: 34066558--34066597 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
34066548 TTTTTTCTTT
*
34066558 CGATTATTTTTTACTTATTTA
1 CGATTATTATTTACTTATTTA
*
34066579 CGATT-TTATTTATTTATTT
1 CGATTATTATTTACTTATTT
34066598 TATTTAGCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (21 bp):
CGATTATTATTTACTTATTTA
Found at i:34066868 original size:25 final size:25
Alignment explanation
Indices: 34066840--34066891 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
34066830 TTTTTTTTCA
34066840 TTTTCT-TTATTTTTTTATTAATTAG
1 TTTTCTATTATTTTTTTA-TAATTAG
* * *
34066865 TTTTTTATTCTTTTTTTATATTTAG
1 TTTTCTATTATTTTTTTATAATTAG
34066890 TT
1 TT
34066892 ATTTTTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (25 bp):
TTTTCTATTATTTTTTTATAATTAG
Found at i:34066894 original size:36 final size:35
Alignment explanation
Indices: 34066824--34066894 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 35
34066814 TTACAGTTCA
*
34066824 AATTAGTTTTTTTTCATTTTCTTTATTTTTTTATT
1 AATTAGTTTTTTTTCATTTTCTTTATTTTGTTATT
34066859 AATTAGTTTTTTATTC-TTTT-TTTATATTTAGTTATT
1 AATTAGTTTTTT-TTCATTTTCTTTAT-TTT-GTTATT
34066895 TTTTAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
34 5 0.16
35 19 0.59
36 8 0.25
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (35 bp):
AATTAGTTTTTTTTCATTTTCTTTATTTTGTTATT
Found at i:34066990 original size:22 final size:21
Alignment explanation
Indices: 34066965--34067018 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
34066955 ATATAATTAT
*
34066965 TTATTTATTTATTTATATGTAA
1 TTATTTATTTATCTATATGT-A
*
34066987 TTATTTTTTTATCTATATGTA
1 TTATTTATTTATCTATATGTA
34067008 TATATTTATTT
1 T-TATTTATTT
34067019 TAGTATACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (21 bp):
TTATTTATTTATCTATATGTA
Found at i:34067326 original size:20 final size:20
Alignment explanation
Indices: 34067292--34067329 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34067282 TATATGTTAA
**
34067292 AATTCATTTTTTATTTTGAT
1 AATTCATTTGATATTTTGAT
34067312 AATTCATTTGATATTTTG
1 AATTCATTTGATATTTTG
34067330 TATGTGATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (20 bp):
AATTCATTTGATATTTTGAT
Found at i:34074455 original size:44 final size:44
Alignment explanation
Indices: 34074364--34074893 Score: 466
Period size: 44 Copynumber: 12.1 Consensus size: 44
34074354 GCAGATCAGT
* * * * *
34074364 GAAGATAGCAGGTCCTGTC-TCCTATATTGGTAG-GAGGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * *
34074407 GAAGATGCAGATCTTATCTTCCCATATTGGTGGCGGAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * *
34074451 GAAGATGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * *
34074494 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* *
34074539 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * * *
34074583 GAAGAAAGAAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * * *
34074627 AAAGATAGCAGGTCATATCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * *
34074671 GAAGATGCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * * *
34074715 GAAGAAAGCAGATCTTGTCTTCATGTATTAG-CGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
* * * * * *
34074759 GAAAATAACAGGTCATGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
*
34074803 GAAGATGCAGATCTTGTCTTACC-ATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTT-CCTATATTGGTGGCGAAGTAGATC
* * * * *
34074847 GAAGAAAGCAGATCTTGTCTTCATTTATTGG-CGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
34074891 GAA
1 GAA
34074894 AATAGCAGGT
Statistics
Matches: 387, Mismatches: 85, Indels: 29
0.77 0.17 0.06
Matches are distributed among these distances:
42 9 0.02
43 77 0.20
44 224 0.58
45 77 0.20
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (44 bp):
GAAGATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
Found at i:34074579 original size:132 final size:132
Alignment explanation
Indices: 34074364--34074904 Score: 888
Period size: 132 Copynumber: 4.1 Consensus size: 132
34074354 GCAGATCAGT
* *
34074364 GAAGATAGCAGGTCCTGTC-TCCTATATTGGTAGGAGGTGGATCGAAGATGCAGATCTTATCTTC
1 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTC
* * * *
34074428 CCATATTGGTGGCGGAGTAGATCGAAG-ATGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
34074492 TC
131 TC
* * *
34074494 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTATCTT
*
34074559 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGAAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
65 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
34074624 ATC
130 ATC
* *
34074627 AAAGATAGCAGGTCATATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTC
1 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTC
*
34074692 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
34074757 TC
131 TC
* * * *
34074759 GAAAATAACAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTA
1 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTC
*
34074824 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATTTATTGGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
34074889 TC
131 TC
*
34074891 GAAAATAGCAGGTC
1 GAAGATAGCAGGTC
34074905 TTACCTTCCT
Statistics
Matches: 385, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
130 18 0.05
131 14 0.04
132 286 0.74
133 67 0.17
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (132 bp):
GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTC
CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
TC
Found at i:34075626 original size:21 final size:21
Alignment explanation
Indices: 34075601--34075655 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
34075591 ATCTTCGAGG
34075601 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
34075622 ATATGCAATCTTATATATGAT
1 ATATGCAATCTTAGATATGAT
34075643 ATAT--AATCTTAGA
1 ATATGCAATCTTAGA
34075656 AGATATGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.25
21 24 0.75
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:34076212 original size:24 final size:24
Alignment explanation
Indices: 34076179--34076235 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
34076169 TTTTTTTTCA
34076179 TTTTCTTTATT-TTTTTATTAATTAG
1 TTTT-TTTATTCTTTTTA-TAATTAG
*
34076204 TTTTTTTATTCTTTTTATATTTAG
1 TTTTTTTATTCTTTTTATAATTAG
34076228 TTATTTTT
1 TT-TTTTT
34076236 TAAAAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (24 bp):
TTTTTTTATTCTTTTTATAATTAG
Found at i:34076373 original size:35 final size:38
Alignment explanation
Indices: 34076318--34076410 Score: 120
Period size: 41 Copynumber: 2.4 Consensus size: 38
34076308 TTATTTATTT
34076318 ATATGTAATTATTTTTAC-T-ATA-CATATGCATGTACAC
1 ATAT-TAA-TATTTTTACATAATAGCATATGCATGTACAC
34076355 ATATTAATATTTTTACTATACATATGCATATGCATGTACAC
1 ATATTAATATTTTTAC-ATA-ATA-GCATATGCATGTACAC
34076396 ATATTAATATTTTTA
1 ATATTAATATTTTTA
34076411 ACTAATTCTT
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
35 9 0.18
36 3 0.06
37 5 0.10
39 3 0.06
41 30 0.60
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (38 bp):
ATATTAATATTTTTACATAATAGCATATGCATGTACAC
Found at i:34092182 original size:24 final size:24
Alignment explanation
Indices: 34092155--34092200 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
34092145 CTTGAAACCA
*
34092155 TTTCCACAGCTCCTTTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
34092179 TTTCCACAGCTCCTCTCTTCAC
1 TTTCCACAGCTCCTCTCTTCAC
34092201 TCTCTTCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.13, C:0.46, G:0.04, T:0.37
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:34092425 original size:14 final size:13
Alignment explanation
Indices: 34092390--34092416 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34092380 GTAGTAGATG
34092390 TGTTTTCTGCAAA
1 TGTTTTCTGCAAA
34092403 TGTTTTCTGCAAA
1 TGTTTTCTGCAAA
34092416 T
1 T
34092417 CAGTTTCTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48
Consensus pattern (13 bp):
TGTTTTCTGCAAA
Found at i:34094081 original size:17 final size:15
Alignment explanation
Indices: 34094047--34094089 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 15
34094037 AATGGCATGG
*
34094047 CATTTGTTTTTGAAA
1 CATTTGTTTTTCAAA
34094062 CATTTGTTTCATTCAAA
1 CATTTGTTT--TTCAAA
34094079 CATTTGTTTTT
1 CATTTGTTTTT
34094090 ATATATACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 11 0.44
17 14 0.56
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (15 bp):
CATTTGTTTTTCAAA
Found at i:34095175 original size:20 final size:20
Alignment explanation
Indices: 34095111--34095187 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
34095101 AAATCATTGC
34095111 AATATATGTAAAAACAATTT
1 AATATATGTAAAAACAATTT
* ** *
34095131 AA-A-ATATAAAAATTTATTA
1 AATATATGTAAAAA-CAATTT
34095150 ATATATATGTAAAAACAATTT
1 A-ATATATGTAAAAACAATTT
34095171 AATATATGTAAAAACAA
1 AATATATGTAAAAACAA
34095188 CTTTTCCGGA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.18
19 5 0.11
20 19 0.42
21 5 0.11
22 8 0.18
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (20 bp):
AATATATGTAAAAACAATTT
Found at i:34095299 original size:20 final size:20
Alignment explanation
Indices: 34095274--34095313 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
34095264 AATATTTTCC
*
34095274 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
34095294 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
34095314 TCATTTTCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:34095320 original size:14 final size:14
Alignment explanation
Indices: 34095297--34095332 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
34095287 ACAGAAAAGT
34095297 AAAACATTTTCCAG
1 AAAACATTTTCCAG
* *
34095311 AAATCATTTTCCGG
1 AAAACATTTTCCAG
34095325 AAAACATT
1 AAAACATT
34095333 CTACTTCCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (14 bp):
AAAACATTTTCCAG
Found at i:34096848 original size:24 final size:24
Alignment explanation
Indices: 34096820--34096871 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
34096810 TTTCTAGAAG
* *
34096820 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
34096844 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
34096868 ATTT
1 ATTT
34096872 GACCTACGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:34097575 original size:105 final size:107
Alignment explanation
Indices: 34097418--34097610 Score: 277
Period size: 105 Copynumber: 1.8 Consensus size: 107
34097408 AAAAACCGTC
* *
34097418 GAGCTTTGGTGGCCTAAGCGACGCTTTTATAAAAACGCCGCTATAGATAAGCA-T-TAGCGGCGC
1 GAGCTTTGGTGGCATAAGCGACGCTTTTAGAAAAACGCCGCTATAGATAAGCATTATAGCGGCGC
*
34097481 TTT-TTGAAAAACACCGCGAAAAAAATTTAGCACAAAGCTATT
66 TTTCTTAAAAAACACCGC-AAAAAAATTTAGCACAAAGCTATT
* * *
34097523 GAGCTTTGGTGGCATTAGCGGCGCTTTT-GAAAATCGCCGCTATAGATCAAGCATTATAGCGGCG
1 GAGCTTTGGTGGCATAAGCGACGCTTTTAGAAAAACGCCGCTATAGAT-AAGCATTATAGCGGCG
*
34097587 CTTTCTTAAAAAACGCCGCAAAAA
65 CTTTCTTAAAAAACACCGCAAAAA
34097611 TTATTTTATG
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
104 17 0.22
105 30 0.39
106 1 0.01
107 17 0.22
108 12 0.16
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (107 bp):
GAGCTTTGGTGGCATAAGCGACGCTTTTAGAAAAACGCCGCTATAGATAAGCATTATAGCGGCGC
TTTCTTAAAAAACACCGCAAAAAAATTTAGCACAAAGCTATT
Found at i:34101545 original size:18 final size:18
Alignment explanation
Indices: 34101522--34101581 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
34101512 TATGTATTCT
34101522 AATGTAATTCTAATATAG
1 AATGTAATTCTAATATAG
* * **
34101540 AATGTAA-AC-AATTTTCT
1 AATGTAATTCTAA-TATAG
*
34101557 TATGTAATTCTAATATAG
1 AATGTAATTCTAATATAG
34101575 AATGTAA
1 AATGTAA
34101582 CTTGTTTTAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 2 0.07
17 9 0.31
18 16 0.55
19 2 0.07
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (18 bp):
AATGTAATTCTAATATAG
Found at i:34101818 original size:43 final size:43
Alignment explanation
Indices: 34101757--34102026 Score: 382
Period size: 43 Copynumber: 6.3 Consensus size: 43
34101747 AAGTCATGTT
* *
34101757 TTTAGTGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTTTTGGTC
1 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
34101800 TTTAGTGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
34101843 -TTAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGGTCTTGGTC
1 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * * * *
34101885 TTTAGCGGCGATTGCGGGAAAAGTGTCGTTAAAGGT-TGTGGTC
1 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCT-TGGTC
* *
34101928 TTTAGTGGCGTTTGCGAGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
34101971 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
34102014 TTTAGCGGCGTTT
1 TTTAGTGGCGTTT
34102027 TTTCCGGAGC
Statistics
Matches: 203, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
42 39 0.19
43 163 0.80
44 1 0.00
ACGTcount: A:0.19, C:0.15, G:0.34, T:0.31
Consensus pattern (43 bp):
TTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:34105098 original size:40 final size:40
Alignment explanation
Indices: 34105046--34105160 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
34105036 GTTTGGATAA
*
34105046 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTT-TCGG
1 AAAACGCAGCTAAAGATCGAGCATTAGCGGCGCTTTAT-GG
* *
34105086 AAAATGCAGCTAAAGATCGAACATTAGCGGCGCTTTATGG
1 AAAACGCAGCTAAAGATCGAGCATTAGCGGCGCTTTATGG
* * *
34105126 AAAACGCCGCTAAAAAT-AAGCATTAGCGGCGCTTT
1 AAAACGCAGCTAAAGATCGAGCATTAGCGGCGCTTT
34105161 CCAAAAAAAC
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 16 0.24
40 49 0.74
41 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (40 bp):
AAAACGCAGCTAAAGATCGAGCATTAGCGGCGCTTTATGG
Found at i:34105170 original size:40 final size:40
Alignment explanation
Indices: 34105044--34105187 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
34105034 GCGTTTGGAT
* *
34105044 AAAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTC-
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGC-TTTCA
** * * *
34105084 GGAAAATGCAGCTAAAGATCGAA-CATTAGCGGCGCTTT-A
1 AAAAAACGCCGCTAAAAATC-AAGCATTAGCGGCGCTTTCA
**
34105123 TGGAAAACGCCGCTAAAAAT-AAGCATTAGCGGCGCTTTCCA
1 -AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTT-CA
34105164 AAAAAACGCCGC-AAAAATCTAAGC
1 AAAAAACGCCGCTAAAAATC-AAGC
34105188 CCAACGACGC
Statistics
Matches: 86, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
38 2 0.02
39 24 0.28
40 54 0.63
41 6 0.07
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.18
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTCA
Found at i:34105325 original size:41 final size:41
Alignment explanation
Indices: 34105268--34105396 Score: 152
Period size: 41 Copynumber: 3.2 Consensus size: 41
34105258 GCATTAGCAA
*
34105268 CGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGTGG
1 CGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGCGG
* *
34105309 CGTTTTTGAGGAAGCGCCGCTAATTCCCAAGGCTTTAGCGG
1 CGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGCGG
* * * ** * *
34105350 CGTTTCTAAGGAATCGCTGCTAATGCTC-AGGCATTAGCGG
1 CGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGCGG
*
34105390 CGCTTTT
1 CGTTTTT
34105397 CGGAAAATGC
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
40 16 0.21
41 60 0.79
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
CGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGCGG
Found at i:34105488 original size:40 final size:40
Alignment explanation
Indices: 34105380--34105501 Score: 133
Period size: 40 Copynumber: 3.0 Consensus size: 40
34105370 TAATGCTCAG
* * *
34105380 GCATTAGCGGCGCTTTTCGGAAAATGCCGCTAAAGATCGAA
1 GCATTAGCGGCGCTTTACGGAAAACGCCGCTAAAAATC-AA
*
34105421 -CATTAGCGGCGCTTTATGGAAAACGCCGCTAAAAAT-AA
1 GCATTAGCGGCGCTTTACGGAAAACGCCGCTAAAAATCAA
* **
34105459 GCATTAGCGGCGCTTTCCAAAAAAGCGCCGC-AAAAATCTAA
1 GCATTAGCGGCGCTTTACGGAAAA-CGCCGCTAAAAATC-AA
34105500 GC
1 GC
34105502 CCAACGACGC
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.03
39 25 0.36
40 38 0.55
41 4 0.06
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTACGGAAAACGCCGCTAAAAATCAA
Found at i:34105635 original size:314 final size:314
Alignment explanation
Indices: 34105066--34105704 Score: 1224
Period size: 314 Copynumber: 2.0 Consensus size: 314
34105056 TAAAGATCGA
34105066 GCATTAGCGGCGCTTTTCGGAAAATGCAGCTAAAGATCGAACATTAGCGGCGCTTTATGGAAAAC
1 GCATTAGCGGCGCTTTTCGGAAAATGCAGCTAAAGATCGAACATTAGCGGCGCTTTATGGAAAAC
34105131 GCCGCTAAAAATAAGCATTAGCGGCGCTTTCCAAAAAAACGCCGCAAAAATCTAAGCCCAACGAC
66 GCCGCTAAAAATAAGCATTAGCGGCGCTTTCCAAAAAAACGCCGCAAAAATCTAAGCCCAACGAC
34105196 GCCGTTTTCTGAGCTTTTGGGGTTTTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGATCAGGGCA
131 GCCGTTTTCTGAGCTTTTGGGGTTTTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGATCAGGGCA
34105261 TTAGCAACGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGTGGCGTTTTTGAGGAAGCGC
196 TTAGCAACGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGTGGCGTTTTTGAGGAAGCGC
34105326 CGCTAATTCCCAAGGCTTTAGCGGCGTTTCTAAGGAATCGCTGCTAATGCTCAG
261 CGCTAATTCCCAAGGCTTTAGCGGCGTTTCTAAGGAATCGCTGCTAATGCTCAG
*
34105380 GCATTAGCGGCGCTTTTCGGAAAATGCCGCTAAAGATCGAACATTAGCGGCGCTTTATGGAAAAC
1 GCATTAGCGGCGCTTTTCGGAAAATGCAGCTAAAGATCGAACATTAGCGGCGCTTTATGGAAAAC
*
34105445 GCCGCTAAAAATAAGCATTAGCGGCGCTTTCCAAAAAAGCGCCGCAAAAATCTAAGCCCAACGAC
66 GCCGCTAAAAATAAGCATTAGCGGCGCTTTCCAAAAAAACGCCGCAAAAATCTAAGCCCAACGAC
34105510 GCCGTTTTCTGAGCTTTTGGGGTTTTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGATCAGGGCA
131 GCCGTTTTCTGAGCTTTTGGGGTTTTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGATCAGGGCA
34105575 TTAGCAACGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGTGGCGTTTTTGAGGAAGCGC
196 TTAGCAACGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGTGGCGTTTTTGAGGAAGCGC
**
34105640 CGCTAATTCCCTGGGCTTTAGCGGCGTTTCTAAGGAATCGCTGCTAATGCTCAG
261 CGCTAATTCCCAAGGCTTTAGCGGCGTTTCTAAGGAATCGCTGCTAATGCTCAG
*
34105694 GTCTTTAGCGG
1 G-CATTAGCGG
34105705 TGTTTTTGTA
Statistics
Matches: 319, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
314 311 0.97
315 8 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (314 bp):
GCATTAGCGGCGCTTTTCGGAAAATGCAGCTAAAGATCGAACATTAGCGGCGCTTTATGGAAAAC
GCCGCTAAAAATAAGCATTAGCGGCGCTTTCCAAAAAAACGCCGCAAAAATCTAAGCCCAACGAC
GCCGTTTTCTGAGCTTTTGGGGTTTTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGATCAGGGCA
TTAGCAACGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGTGGCGTTTTTGAGGAAGCGC
CGCTAATTCCCAAGGCTTTAGCGGCGTTTCTAAGGAATCGCTGCTAATGCTCAG
Found at i:34105639 original size:41 final size:40
Alignment explanation
Indices: 34105582--34105712 Score: 145
Period size: 41 Copynumber: 3.2 Consensus size: 40
34105572 GCATTAGCAA
* *
34105582 CGTTTTTGAGGAAGCGCCACTAATGCCCAAGGCTTTAGTGG
1 CGTTTTTGAGGAAGCGCCGCTAATGCCC-AGGCTTTAGCGG
* *
34105623 CGTTTTTGAGGAAGCGCCGCTAATTCCCTGGGCTTTAGCGG
1 CGTTTTTGAGGAAGCGCCGCTAATGCCC-AGGCTTTAGCGG
* * * * *
34105664 CGTTTCTAAGGAATCGCTGCTAATGCTCAGGTCTTTAGCGG
1 CGTTTTTGAGGAAGCGCCGCTAATGCCCAGG-CTTTAGCGG
*
34105705 TGTTTTTG
1 CGTTTTTG
34105713 TATTAGCGCT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
40 2 0.03
41 72 0.97
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (40 bp):
CGTTTTTGAGGAAGCGCCGCTAATGCCCAGGCTTTAGCGG
Found at i:34106312 original size:14 final size:15
Alignment explanation
Indices: 34106282--34106320 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
34106272 AGGGAGTATA
34106282 TATGGATTTAAGGAT
1 TATGGATTTAAGGAT
*
34106297 TATGGA-TTAGGGAT
1 TATGGATTTAAGGAT
34106311 TATGG-TTTAA
1 TATGGATTTAA
34106321 TTAATGGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (15 bp):
TATGGATTTAAGGAT
Found at i:34106672 original size:15 final size:15
Alignment explanation
Indices: 34106652--34106717 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
34106642 AGGATTTAAG
34106652 GTTTAGGGGTTAGGA
1 GTTTAGGGGTTAGGA
34106667 GTTTAGGGGTTA-GA
1 GTTTAGGGGTTAGGA
** * *
34106681 CATTAGTGGTTAAGA
1 GTTTAGGGGTTAGGA
*
34106696 G-TTAGGGATTTAGG-
1 GTTTAGGG-GTTAGGA
34106710 GTTTAGGG
1 GTTTAGGG
34106718 TTTTAAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
14 17 0.41
15 24 0.59
ACGTcount: A:0.23, C:0.02, G:0.41, T:0.35
Consensus pattern (15 bp):
GTTTAGGGGTTAGGA
Found at i:34107190 original size:47 final size:47
Alignment explanation
Indices: 34107126--34107230 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
34107116 AAAAATGAAA
* *
34107126 TAAAAACACTAAAATTTTTAATTTTATCTAATTTTTATAAATATTACT
1 TAAAAA-ACTAAAATTTTTAATTTTATCTAATTTTTATAAATATAAAT
34107174 TAAAAAACTAAAATTTTTAATTTTATCTAATTTTTATAAATATAAAT
1 TAAAAAACTAAAATTTTTAATTTTATCTAATTTTTATAAATATAAAT
34107221 TAAAAAACTA
1 TAAAAAACTA
34107231 TGTATTAAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
47 49 0.89
48 6 0.11
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.45
Consensus pattern (47 bp):
TAAAAAACTAAAATTTTTAATTTTATCTAATTTTTATAAATATAAAT
Found at i:34107691 original size:19 final size:18
Alignment explanation
Indices: 34107667--34107715 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
34107657 AAATTATAGG
34107667 AAATAAAATTAAAATACAA
1 AAATAAAATTAAAATA-AA
* *
34107686 AAATAAAAATGAAATAAA
1 AAATAAAATTAAAATAAA
34107704 AACACTAAAATT
1 AA-A-TAAAATT
34107716 TTTAATTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 4 0.16
19 15 0.60
20 6 0.24
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.20
Consensus pattern (18 bp):
AAATAAAATTAAAATAAA
Found at i:34107695 original size:25 final size:25
Alignment explanation
Indices: 34107667--34107714 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
34107657 AAATTATAGG
* *
34107667 AAATAAAATTAAAATACAAAAATAA
1 AAATAAAATAAAAACACAAAAATAA
* *
34107692 AAATGAAATAAAAACACTAAAAT
1 AAATAAAATAAAAACACAAAAAT
34107715 TTTTAATTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (25 bp):
AAATAAAATAAAAACACAAAAATAA
Found at i:34107741 original size:20 final size:20
Alignment explanation
Indices: 34107716--34107754 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
34107706 CACTAAAATT
34107716 TTTAATTTTATCTAATTTTA
1 TTTAATTTTATCTAATTTTA
34107736 TTTAATTTTATCTAATTTT
1 TTTAATTTTATCTAATTTT
34107755 TATAAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTAATTTTATCTAATTTTA
Found at i:34107757 original size:11 final size:10
Alignment explanation
Indices: 34107718--34107754 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
34107708 CTAAAATTTT
34107718 TAATTTTATC
1 TAATTTTATC
*
34107728 TAATTTTATT
1 TAATTTTATC
34107738 TAATTTTATC
1 TAATTTTATC
34107748 TAATTTT
1 TAATTTT
34107755 TATAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (10 bp):
TAATTTTATC
Found at i:34110594 original size:43 final size:43
Alignment explanation
Indices: 34110504--34110809 Score: 384
Period size: 43 Copynumber: 7.2 Consensus size: 43
34110494 TGTTTTTAGT
* * * * **
34110504 GGCGTTTTTGCGAGAAGCGTCGCTAAAGGT-TTGTTCTATAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGC
* * *
34110546 GGCGTTTGTGGGAAAAGCACCACTAAAGGTCTTGAGATATAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGC
* *
34110589 GGCGTTTGTGGGAAAGGCGCCGCTAAAGGTCTTGATCTATAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGC
* *
34110632 GGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGT
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGC
* ** * *
34110675 GGCGTTTGTGTGAAAAGCGCCGCTAAAGGTCCCGATCTATTGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGC
* * *
34110718 GGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGC
*
34110761 GGCGTTTGTGGGAAAAGCGCCGCT-AAGGTCATG-GTCTATAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAG-CTATAGC
34110803 GGCGTTT
1 GGCGTTT
34110810 ATTTCTAAAA
Statistics
Matches: 230, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
42 46 0.20
43 184 0.80
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (43 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATAGC
Found at i:34112239 original size:24 final size:25
Alignment explanation
Indices: 34112207--34112255 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
34112197 AAATTATAGA
*
34112207 TTAAGTACCTAGTT-AAAAAAGAATT
1 TTAAGTACCTAATTGAAAAAA-AATT
34112232 TTAA-TACCTAATTGAAAAAAAATT
1 TTAAGTACCTAATTGAAAAAAAATT
34112256 AATTTGAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (25 bp):
TTAAGTACCTAATTGAAAAAAAATT
Found at i:34112653 original size:2 final size:2
Alignment explanation
Indices: 34112648--34112672 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
34112638 TATATAAAAT
34112648 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
34112673 TACTTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34113274 original size:15 final size:15
Alignment explanation
Indices: 34113254--34113286 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
34113244 TATATAAAAT
34113254 TTATA-TTAAAATTAA
1 TTATATTTAAAA-TAA
34113269 TTATATTTAAAATAA
1 TTATATTTAAAATAA
34113284 TTA
1 TTA
34113287 AGTAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTATATTTAAAATAA
Found at i:34114907 original size:38 final size:38
Alignment explanation
Indices: 34114826--34114906 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 38
34114816 AAATTTTTTA
*
34114826 TTTTTTATTTTTATTATTTTAAAATATTTTTAAAATAC
1 TTTTTTATTTTTATTATATTAAAATATTTTTAAAATAC
*
34114864 TTTTTTCTTTTT-TTATATTAAAATATTTTTAAAATAC
1 TTTTTTATTTTTATTATATTAAAATATTTTTAAAATAC
34114901 TTTTTT
1 TTTTTT
34114907 TAAATTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 30 0.73
38 11 0.27
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (38 bp):
TTTTTTATTTTTATTATATTAAAATATTTTTAAAATAC
Found at i:34120039 original size:29 final size:28
Alignment explanation
Indices: 34119997--34120108 Score: 125
Period size: 28 Copynumber: 4.0 Consensus size: 28
34119987 GTCGTGTATT
*
34119997 CCCTTTTTTTAAAATTTTACAATTTTGTC
1 CCCTATTTTTAAAATTTTACAATTTTG-C
* *
34120026 CCCTATTTTCAAAATTTTATAATTTTGC
1 CCCTATTTTTAAAATTTTACAATTTTGC
* * * *
34120054 CCTTATTTTTTAGATTTTACAGTTTTGC
1 CCCTATTTTTAAAATTTTACAATTTTGC
* * *
34120082 CTCTATTTTTTAGATTTTACAATTTTG
1 CCCTATTTTTAAAATTTTACAATTTTG
34120109 TCCAAAATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 47 0.66
29 24 0.34
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (28 bp):
CCCTATTTTTAAAATTTTACAATTTTGC
Found at i:34120118 original size:29 final size:28
Alignment explanation
Indices: 34120039--34120119 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
34120029 TATTTTCAAA
* ***
34120039 ATTTTATAATTTTGCCCTTATTTTTTAG
1 ATTTTACAATTTTGCCAAAATTTTTTAG
* ***
34120067 ATTTTACAGTTTTGCCTCTATTTTTTAG
1 ATTTTACAATTTTGCCAAAATTTTTTAG
34120095 ATTTTACAATTTTGTCCAAAATTTT
1 ATTTTACAATTTTG-CCAAAATTTT
34120120 ACGTTTTGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 37 0.84
29 7 0.16
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.57
Consensus pattern (28 bp):
ATTTTACAATTTTGCCAAAATTTTTTAG
Found at i:34120744 original size:85 final size:84
Alignment explanation
Indices: 34120627--34120790 Score: 274
Period size: 85 Copynumber: 1.9 Consensus size: 84
34120617 AAACAGTGTA
* *
34120627 GTTCGATTATGAACCAGCGGCAGTTTGTTTAATCTGTAAATATGTTGTGCACTCACAACAAGTGG
1 GTTCGATCATGAACCAGCGGCAGTTTGTTTAATCTGCAAATATGTTGTGCACTCACAACAAGTGG
* *
34120692 CAGTAATTGCAAATATGTG
66 CAATAACTGCAAATATGTG
*
34120711 GTTCGATCATGAACCAAGTGGCAGTTTGTTTAATCTGCAAATATGTTGTGCACTCACAACAAGTG
1 GTTCGATCATGAACC-AGCGGCAGTTTGTTTAATCTGCAAATATGTTGTGCACTCACAACAAGTG
34120776 GCAATAACTGCAAAT
65 GCAATAACTGCAAAT
34120791 GTAACAGCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
84 14 0.19
85 60 0.81
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (84 bp):
GTTCGATCATGAACCAGCGGCAGTTTGTTTAATCTGCAAATATGTTGTGCACTCACAACAAGTGG
CAATAACTGCAAATATGTG
Found at i:34122068 original size:16 final size:16
Alignment explanation
Indices: 34122047--34122079 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
34122037 ATTACTTATC
34122047 TATATGTGTATA-TAAA
1 TATATGT-TATAGTAAA
34122063 TATATGTTATAGTAAA
1 TATATGTTATAGTAAA
34122079 T
1 T
34122080 CATAACAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (16 bp):
TATATGTTATAGTAAA
Found at i:34122136 original size:45 final size:45
Alignment explanation
Indices: 34122087--34122174 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
34122077 AATCATAACA
*
34122087 GAAACAAATAAGACCATAGTTGA-AAGACTCTATAGCATCATGATG
1 GAAACAAATAAGACCATAGCT-ACAAGACTCTATAGCATCATGATG
*
34122132 GAAACAAATAAGACCATAGCTACAAGACTCTATGGCATCATGA
1 GAAACAAATAAGACCATAGCTACAAGACTCTATAGCATCATGA
34122175 AGGGAGTGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 1 0.03
45 39 0.98
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.20
Consensus pattern (45 bp):
GAAACAAATAAGACCATAGCTACAAGACTCTATAGCATCATGATG
Found at i:34122204 original size:45 final size:45
Alignment explanation
Indices: 34122087--34122204 Score: 139
Period size: 45 Copynumber: 2.6 Consensus size: 45
34122077 AATCATAACA
*
34122087 GAAACAAATAAGACCATAGTTGAAAGACTCTATAGCATCATGATG
1 GAAACAAATAAGACCATAGTTGAAAGACTCTATAGCATCATGAAG
* *
34122132 GAAACAAATAAGACCATAGCT-ACAAGACTCTATGGCATCATGAAG
1 GAAACAAATAAGACCATAGTTGA-AAGACTCTATAGCATCATGAAG
* *** * *
34122177 GGAGTGAGTAAGACCATGGTTGAAAGAC
1 GAAACAAATAAGACCATAGTTGAAAGAC
34122205 GCAATGACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
44 1 0.02
45 59 0.97
46 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.19
Consensus pattern (45 bp):
GAAACAAATAAGACCATAGTTGAAAGACTCTATAGCATCATGAAG
Found at i:34122513 original size:13 final size:13
Alignment explanation
Indices: 34122495--34122561 Score: 98
Period size: 13 Copynumber: 5.2 Consensus size: 13
34122485 TGAGTTTTGT
34122495 TGAAATGGTTATA
1 TGAAATGGTTATA
34122508 TGAAATGGTTATA
1 TGAAATGGTTATA
* *
34122521 TGAAATGGCTACA
1 TGAAATGGTTATA
*
34122534 TGAAATGGTTAAA
1 TGAAATGGTTATA
*
34122547 TGAATTGGTTATA
1 TGAAATGGTTATA
34122560 TG
1 TG
34122562 GTAATAGATG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 48 1.00
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.36
Consensus pattern (13 bp):
TGAAATGGTTATA
Found at i:34126270 original size:44 final size:44
Alignment explanation
Indices: 34126199--34126382 Score: 121
Period size: 44 Copynumber: 4.2 Consensus size: 44
34126189 ATCGTCTTAA
* * * * *
34126199 TCTGCTCCACTGTAACTTCAAGAAGATAGGATTGGTTTCTTCTG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATTCTTCTG
* * * ** * *
34126243 TCTGCTCCACTGTAACTTTAGGGAGATAAGACTAAATGCAATCTG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATTC-TTCTG
* * **
34126288 -CT-CT--ACTGCAACTTTAGAGAGATAAGATCTGTGATT-TT-AA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG-GATTCTTCTG
* *
34126328 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTC-G
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATTCTTCTG
34126371 ATCTGCTCCACT
1 -TCTGCTCCACT
34126383 ACTGCTTAGA
Statistics
Matches: 106, Mismatches: 24, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
41 24 0.23
42 6 0.06
43 8 0.08
44 64 0.60
45 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGATTCTTCTG
Found at i:34126301 original size:41 final size:43
Alignment explanation
Indices: 34126243--34126355 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 43
34126233 GTTTCTTCTG
*
34126243 TCTGCTCCACTGTAACTTTAGGGAGATAAGA-C-TAAATGCAA
1 TCTGCTCCACTGCAACTTTAGGGAGATAAGATCGTAAATGCAA
* * * * **
34126284 TCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTGCAACTTTAGGGAGATAAGATC-GTAAATGCAA
*
34126328 TCTGCTCCACTGCAACTTCAGGGAGATA
1 TCTGCTCCACTGCAACTTTAGGGAGATA
34126356 GGATTGGTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 28 0.47
42 1 0.02
44 30 0.51
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTTAGGGAGATAAGATCGTAAATGCAA
Found at i:34126311 original size:85 final size:85
Alignment explanation
Indices: 34126197--34126355 Score: 189
Period size: 85 Copynumber: 1.9 Consensus size: 85
34126187 CCATCGTCTT
* * * ** *
34126197 AATCTGCTCCACTGTAACTTCAAGAAGATAGGAT-TG-GTTTCTTCTGTCTGCTCCACTGTAACT
1 AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGTGATT-TT-AATCTGCTCCACTGCAACT
*
34126260 TTAGGGAGATAAGACTAAATGC
64 TCAGGGAGATAAGACTAAATGC
* *
34126282 AATCTGCTCTACTGCAACTT-TAGAGAGATAAGATCTGTGATTTTAATCTGCTCCACTGCAACTT
1 AATCTGCTCCACTGCAACTTCAAGA-AGATAAGATCTGTGATTTTAATCTGCTCCACTGCAACTT
34126346 CAGGGAGATA
65 CAGGGAGATA
34126356 GGATTGGTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
84 3 0.05
85 52 0.84
86 4 0.06
87 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (85 bp):
AATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGTGATTTTAATCTGCTCCACTGCAACTTC
AGGGAGATAAGACTAAATGC
Found at i:34126424 original size:44 final size:44
Alignment explanation
Indices: 34126301--34126513 Score: 170
Period size: 44 Copynumber: 4.9 Consensus size: 44
34126291 TACTGCAACT
* * * **
34126301 TTAGAGAGATAAGATCTGTGATTTT-AATCTGCTCCACTGCAAC
1 TTAGAGAGATAAGATCTGTAATTTTCAATCTACTCCACTACTGC
* * * *
34126344 TTCAGGGAGATAGGAT-TGGT--TTCTTCGATCTGCTCCACTACTGC
1 TT-AGAGAGATAAGATCT-GTAATT-TTCAATCTACTCCACTACTGC
* *
34126388 TTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGC
1 TTAGAGAGATAAGATCTGTAATTTTCAATCTACTCCACTACTGC
* *** * * *
34126432 TTA-AGGAGATAAGGT-TGGGGTCTTCGATCTGCTCCACTACTGC
1 TTAGA-GAGATAAGATCTGTAATTTTCAATCTACTCCACTACTGC
34126475 TTAG-GCAGATAAGATCTGTAATTTTCAATCTACTCCACT
1 TTAGAG-AGATAAGATCTGTAATTTTCAATCTACTCCACT
34126514 GCCAACCAGG
Statistics
Matches: 131, Mismatches: 28, Indels: 21
0.73 0.16 0.12
Matches are distributed among these distances:
42 3 0.02
43 50 0.38
44 76 0.58
45 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (44 bp):
TTAGAGAGATAAGATCTGTAATTTTCAATCTACTCCACTACTGC
Found at i:34126527 original size:87 final size:88
Alignment explanation
Indices: 34126301--34126529 Score: 315
Period size: 87 Copynumber: 2.6 Consensus size: 88
34126291 TACTGCAACT
* * *
34126301 TTAGAGAGATAAGATCTGTGATTTT-AATCTGCTCCACTGCAACTTCAGGGAGAT-AGGATTGGT
1 TTAGAGAGATAAGATCTGTAATTTTCAATCTACTCCACTGCAAC-TCAGGGAGATAAGGATTGGG
*
34126364 TTCTTCGATCTGCTCCACTACTGC
65 GTCTTCGATCTGCTCCACTACTGC
* ** * *
34126388 TTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTTAAGGAGATAAGG-TTGGGG
1 TTAGAGAGATAAGATCTGTAATTTTCAATCTACTCCACTGCAACTCAGGGAGATAAGGATTGGGG
34126452 TCTTCGATCTGCTCCACTACTGC
66 TCTTCGATCTGCTCCACTACTGC
34126475 TTAG-GCAGATAAGATCTGTAATTTTCAATCTACTCCACTGCCAAC-CAGGGAGATA
1 TTAGAG-AGATAAGATCTGTAATTTTCAATCTACTCCACTG-CAACTCAGGGAGATA
34126530 GAATTACTGG
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
86 1 0.01
87 104 0.84
88 19 0.15
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (88 bp):
TTAGAGAGATAAGATCTGTAATTTTCAATCTACTCCACTGCAACTCAGGGAGATAAGGATTGGGG
TCTTCGATCTGCTCCACTACTGC
Found at i:34126529 original size:44 final size:44
Alignment explanation
Indices: 34126481--34126794 Score: 157
Period size: 44 Copynumber: 7.1 Consensus size: 44
34126471 CTGCTTAGGC
*
34126481 AGATAAGATCTGTAATTTTCAATCTACTCCACTGCCAACCAGGG
1 AGATAAGATCTGTAATCTTCAATCTACTCCACTGCCAACCAGGG
* * * *
34126525 AGAT-AGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCTCAGGG
1 AGATAAGATCTGTAAT--CTTCAATCTACTCCACTGCCAA-C-CAGGG
* * **** * * * ** *
34126569 AGGTAAAATCCACCATCTTCGATCTACTTCACT-ACTGCTTAGGG
1 AGATAAGATCTGTAATCTTCAATCTACTCCACTGCCAAC-CAGGG
*
34126613 AGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAGGG
1 AGATAAGATCTGTAATCTTCAATCTACTCCACTGCCAACCAGGG
* *
34126657 AGAT-AGAATTACTG--A-CTTCAATGTACTCCACTG-TAACCAAAGGG
1 AGATAAG-A-T-CTGTAATCTTCAATCTACTCCACTGCCAACC--AGGG
* * ** * * * * *
34126701 A-AGTAAAATCCGCCATCTTCGATCTGCTCCACT-ACTACTTAGGG
1 AGA-TAAGATCTGTAATCTTCAATCTACTCCACTGCCAAC-CAGGG
* *
34126745 AGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGG
1 AGATAAGATCTGTAATCTTCAATCTACTCCACTGCCAACCAGGG
34126789 AGATAA
1 AGATAA
34126795 AATTACTGGC
Statistics
Matches: 194, Mismatches: 53, Indels: 46
0.66 0.18 0.16
Matches are distributed among these distances:
41 3 0.02
42 9 0.05
43 40 0.21
44 98 0.51
45 40 0.21
46 3 0.02
47 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (44 bp):
AGATAAGATCTGTAATCTTCAATCTACTCCACTGCCAACCAGGG
Found at i:34126908 original size:44 final size:44
Alignment explanation
Indices: 34126860--34127057 Score: 104
Period size: 44 Copynumber: 4.5 Consensus size: 44
34126850 TTTGATCTGC
*
34126860 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTAT
1 TCCACTACTGCTTAGGGAGATAAAATCTGAAATCTTCAATCTAT
* ** * * *
34126904 TCCACTGCCAAC-TAGGGAGATAAAATTACTG---GCTTCAATGTAC
1 TCCACT-ACTGCTTAGGGAGATAAAA-T-CTGAAATCTTCAATCTAT
** ** * ** * *
34126947 TCCACTGTAAC--CACAATGAGGTAAAATCTGCCATCTTCGATCTGT
1 TCCAC--T-ACTGCTTAGGGAGATAAAATCTGAAATCTTCAATCTAT
* *
34126992 TCCACTATTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTAT
1 TCCACTACTGCTTAGGGAGATAAAATCTGAAATCTTCAATCTAT
**
34127036 TCCAC-AGCTGCCCAGGGAGATA
1 TCCACTA-CTGCTTAGGGAGATA
34127058 GAATTACTGG
Statistics
Matches: 110, Mismatches: 32, Indels: 24
0.66 0.19 0.14
Matches are distributed among these distances:
42 4 0.04
43 18 0.16
44 68 0.62
45 17 0.15
46 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGAGATAAAATCTGAAATCTTCAATCTAT
Found at i:34127113 original size:132 final size:132
Alignment explanation
Indices: 34126452--34127106 Score: 1040
Period size: 132 Copynumber: 5.0 Consensus size: 132
34126442 AAGGTTGGGG
* * * *
34126452 TCTTCGATCTGCTCCACTACTGCTTAGGCAGATAAGATCTGTAATTTTCAATCTACTCCACTGCC
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
* *
34126517 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGC
34126582 CA
131 CA
* * *
34126584 TCTTCGATCTACTTCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCC
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
* * *
34126649 AACCAGGGAGATAGAATTACTGACTTCAATGTACTCCACTGTAACCAAAGGGAAGTAAAATCCGC
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGC
34126714 CA
131 CA
*
34126716 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
* * * *
34126781 AACCAGGGAGATAAAATTACTGGCTTCAATGCACTCCACTGTAACCATAAGGAGGTAAAATCCGC
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGC
34126846 CA
131 CA
*
34126848 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
* * ** *
34126913 AACTAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAACCACAATGAGGTAAAATCTGC
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGC
34126978 CA
131 CA
* * * *
34126980 TCTTCGATCTGTTCCACTATTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACAGCT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
** *
34127045 GCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATC
66 AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATC
34127107 TACCATCAAC
Statistics
Matches: 484, Mismatches: 39, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 484 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (132 bp):
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCC
AACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGC
CA
Found at i:34127278 original size:87 final size:88
Alignment explanation
Indices: 34127114--34127280 Score: 221
Period size: 87 Copynumber: 1.9 Consensus size: 88
34127104 ATCTACCATC
** * *
34127114 AACCTGCTCCACTGTAACCATTGGAGGCAAGGCTAGTATCTTCGATCTGCTTCACTGTCAATGCA
1 AACCTGCTCCACTACAACCATGGGAGGCAAGGCTAGTATCTTCGATCTGCTTCACCGTCAATGCA
*
34127179 GGAAGACAAGATCTGCTATCTTT
66 AGAAGACAAGATCTGCTATCTTT
* * * *
34127202 AACCTGCTCCACTACAACCGA-GGGAGGCAAGGCT-TTATTTTCGATCTGCTTCGCCGTCGATGC
1 AACCTGCTCCACTACAACC-ATGGGAGGCAAGGCTAGTATCTTCGATCTGCTTCACCGTCAATGC
*
34127265 AAGAAGGCAAGATCTG
65 AAGAAGACAAGATCTG
34127281 TTATTTTCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
87 38 0.56
88 29 0.43
89 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (88 bp):
AACCTGCTCCACTACAACCATGGGAGGCAAGGCTAGTATCTTCGATCTGCTTCACCGTCAATGCA
AGAAGACAAGATCTGCTATCTTT
Found at i:34129417 original size:12 final size:12
Alignment explanation
Indices: 34129400--34129433 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
34129390 TTTTTTTCTT
*
34129400 TTTTGCTTTTGC
1 TTTTGCTTTTGA
34129412 TTTTGCTTTTGA
1 TTTTGCTTTTGA
*
34129424 TTTTGATTTT
1 TTTTGCTTTT
34129434 TTTAATTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.09, G:0.15, T:0.71
Consensus pattern (12 bp):
TTTTGCTTTTGA
Found at i:34133695 original size:38 final size:38
Alignment explanation
Indices: 34133643--34133723 Score: 119
Period size: 38 Copynumber: 2.1 Consensus size: 38
34133633 TTTTGAAATA
* *
34133643 ATATATAAAAAATTTATACTAAATAATATAT-ATACAT
1 ATATAAAAAAAATTTAAACTAAATAATATATAATACAT
34133680 ATATAAAAAACAATTTAAACTAAATAATATATACATACAT
1 ATATAAAAAA-AATTTAAACTAAATAATATATA-ATACAT
34133720 ATAT
1 ATAT
34133724 TAAACTAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
37 9 0.23
38 20 0.51
40 10 0.26
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (38 bp):
ATATAAAAAAAATTTAAACTAAATAATATATAATACAT
Found at i:34142792 original size:216 final size:215
Alignment explanation
Indices: 34142416--34142850 Score: 789
Period size: 216 Copynumber: 2.0 Consensus size: 215
34142406 GAGGATATAG
*
34142416 TTTGGGGATTTTTTTTACCAAGACTTTACTAACTATAGAGTTTTCAGGGAAACATGTGGAGAGGA
1 TTTGGGGATTTGTTTTACCAAGACTTTACTAACTATAGAGTTTTCAGGGAAACATGTGGAGAGGA
*
34142481 TAGGAATGCAAAACATGACTCATCCACTTCACTAGGGCAAATAGGAGACTGTTGGATATAGTGCC
66 TAGGAATGCAAAACATGACTCATCCACTTCACTAGGGCAAATAGAAGACTGTTGGATATAGTGCC
*
34142546 CTAAGTGTAGTATTTTCGTCTAAATACACTTGTAATTTTTTTCAAACGGATTGGTTAATAAAATT
131 CTAAGTGTAGTATTTTCGTCTAAATACACTTGTAA-TTTTTTCAAACGGATGGGTTAATAAAATT
*
34142611 ATTCATGAATTACATTAATAC
195 ATTCATGAATTACATTAACAC
** *
34142632 TTTGGGGATTTGTTTTACCAAGACTTTACTAGTTATAGAGTTTTCAGGGAAACATGTGGAGATGA
1 TTTGGGGATTTGTTTTACCAAGACTTTACTAACTATAGAGTTTTCAGGGAAACATGTGGAGAGGA
34142697 TAGGAATGCAAAACATGACTCATCCACTTCACTAGGGCAAATAGAAGACTGTTGGATATAGTGCC
66 TAGGAATGCAAAACATGACTCATCCACTTCACTAGGGCAAATAGAAGACTGTTGGATATAGTGCC
*
34142762 CTAAGTGTAGTATTTTCGTCTAAGTACACTTGTAATTTTTTCAAACGGATGGGTTAATAAAATTA
131 CTAAGTGTAGTATTTTCGTCTAAATACACTTGTAATTTTTTCAAACGGATGGGTTAATAAAATTA
34142827 TTCATGAATTACATTAACAC
196 TTCATGAATTACATTAACAC
34142847 TTTG
1 TTTG
34142851 TATATTGTCT
Statistics
Matches: 211, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
215 52 0.25
216 159 0.75
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (215 bp):
TTTGGGGATTTGTTTTACCAAGACTTTACTAACTATAGAGTTTTCAGGGAAACATGTGGAGAGGA
TAGGAATGCAAAACATGACTCATCCACTTCACTAGGGCAAATAGAAGACTGTTGGATATAGTGCC
CTAAGTGTAGTATTTTCGTCTAAATACACTTGTAATTTTTTCAAACGGATGGGTTAATAAAATTA
TTCATGAATTACATTAACAC
Found at i:34145982 original size:26 final size:27
Alignment explanation
Indices: 34145943--34146005 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
34145933 AACAGAAACG
**
34145943 CCAAAAAATCCAAT-ATAGTTAGT-TGA
1 CCAAAAAAGACAATGATAGTT-GTGTGA
34145969 CCAAAAAAGACAATGGAATAGTTGTGTGA
1 CCAAAAAAGACAAT-G-ATAGTTGTGTGA
34145998 CCAAAAAA
1 CCAAAAAA
34146006 AATACCAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 12 0.39
28 2 0.06
29 17 0.55
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (27 bp):
CCAAAAAAGACAATGATAGTTGTGTGA
Found at i:34152270 original size:42 final size:42
Alignment explanation
Indices: 34152190--34152284 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
34152180 TTGCTTCTAC
* * *
34152190 GTTGCTTCCTTTTTTGTCTGAACCTGTATATTGTTTTCCCAA
1 GTTGCTTCCTTTTTTGTCTGAACATGGATATTGCTTTCCCAA
* *
34152232 GTTGCTTCCTTTTTTGTCT-AGACATGGATGTTGCTTTCCCAT
1 GTTGCTTCCTTTTTTGTCTGA-ACATGGATATTGCTTTCCCAA
*
34152274 GTTGTTTCCTT
1 GTTGCTTCCTT
34152285 GATATTTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 45 0.98
ACGTcount: A:0.12, C:0.21, G:0.17, T:0.51
Consensus pattern (42 bp):
GTTGCTTCCTTTTTTGTCTGAACATGGATATTGCTTTCCCAA
Found at i:34152891 original size:22 final size:22
Alignment explanation
Indices: 34152844--34152891 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
34152834 AATAACATAG
*
34152844 TTTTAATAAATGCAGAAAAATC
1 TTTTAATAAATGCAAAAAAATC
*
34152866 TTTTAATAAATGGAAAGAAAAT-
1 TTTTAATAAATGCAAA-AAAATC
34152888 TTTT
1 TTTT
34152892 GAACTGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.48, C:0.04, G:0.10, T:0.38
Consensus pattern (22 bp):
TTTTAATAAATGCAAAAAAATC
Found at i:34157431 original size:114 final size:114
Alignment explanation
Indices: 34157232--34157575 Score: 465
Period size: 114 Copynumber: 3.0 Consensus size: 114
34157222 AAAATAAGCA
** * * *
34157232 TTAGCGGCGTTTTCCAGAAAGCGCCGC-AAAATACCTAAGCCCAACGGCGCCGTTTTCAGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * * * *
34157296 TCGGGGATTTTGCGGTGTTTTTAAGAAAGCGCCGCTAATGTTCAGGGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* * * *
34157345 TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAAATCTAAGCCTAACGACGCCGTCTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * * *
34157410 TTGGGGATTTAGTAGCGTTTTTAGGTAAGCGCCGCTAATGCTCAGGTCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* *
34157459 TTAGCGGCATTTTTGGGAAAGCGCCACAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * * *
34157524 TCGGGGATTTAGTGGCATTTTTAAGTAAGTGCCGCTAATGCTTAGGGAT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
34157573 TTA
1 TTA
34157576 AAATAATTTA
Statistics
Matches: 198, Mismatches: 32, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
113 24 0.12
114 174 0.88
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
Found at i:34158061 original size:14 final size:14
Alignment explanation
Indices: 34158042--34158107 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 14
34158032 TTAATGTGAT
* *
34158042 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
34158056 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
*
34158070 TTAGGGGTTA--GG
1 TTAAGGGTTAGGGG
* **
34158082 TTAGGGGTTAGATG
1 TTAAGGGTTAGGGG
*
34158096 TTAAGAGTTAGG
1 TTAAGGGTTAGG
34158108 AATTTAGGGT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
12 12 0.28
14 31 0.72
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:34158085 original size:12 final size:12
Alignment explanation
Indices: 34158054--34158092 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
34158044 AAGGTTTATG
*
34158054 GGTTAAGGGTTA
1 GGTTAGGGGTTA
34158066 GGGGTTAGGGGTTA
1 --GGTTAGGGGTTA
34158080 GGTTAGGGGTTA
1 GGTTAGGGGTTA
34158092 G
1 G
34158093 ATGTTAAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.54
14 11 0.46
ACGTcount: A:0.18, C:0.00, G:0.51, T:0.31
Consensus pattern (12 bp):
GGTTAGGGGTTA
Found at i:34158092 original size:7 final size:7
Alignment explanation
Indices: 34158053--34158092 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
34158043 TAAGGTTTAT
*
34158053 GGGTTAA
1 GGGTTAG
34158060 GGGTTAG
1 GGGTTAG
34158067 GGGTTAG
1 GGGTTAG
34158074 GGGTTA-
1 GGGTTAG
34158080 -GGTTAG
1 GGGTTAG
34158086 GGGTTAG
1 GGGTTAG
34158093 ATGTTAAGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 5 0.17
7 25 0.83
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.30
Consensus pattern (7 bp):
GGGTTAG
Found at i:34158098 original size:19 final size:19
Alignment explanation
Indices: 34158061--34158098 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
34158051 ATGGGTTAAG
*
34158061 GGTTAGGGGTTAGGGGTTA
1 GGTTAGGGGTTAGAGGTTA
*
34158080 GGTTAGGGGTTAGATGTTA
1 GGTTAGGGGTTAGAGGTTA
34158099 AGAGTTAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.34
Consensus pattern (19 bp):
GGTTAGGGGTTAGAGGTTA
Found at i:34158098 original size:26 final size:26
Alignment explanation
Indices: 34158054--34158107 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
34158044 AAGGTTTATG
* * *
34158054 GGTTAAGGGTTAGGGGTTAGGGGTTA
1 GGTTAAGGGTTAGAGGTTAAGAGTTA
* *
34158080 GGTTAGGGGTTAGATGTTAAGAGTTA
1 GGTTAAGGGTTAGAGGTTAAGAGTTA
34158106 GG
1 GG
34158108 AATTTAGGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.46, T:0.31
Consensus pattern (26 bp):
GGTTAAGGGTTAGAGGTTAAGAGTTA
Found at i:34158211 original size:14 final size:14
Alignment explanation
Indices: 34158186--34158225 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
34158176 ATATATTAAA
*
34158186 TAAGGTTTAGGGGT
1 TAAGGGTTAGGGGT
*
34158200 TAGGGGTTAGGGGT
1 TAAGGGTTAGGGGT
34158214 TAAGGGTTAGGG
1 TAAGGGTTAGGG
34158226 ATTCAGGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (14 bp):
TAAGGGTTAGGGGT
Found at i:34158219 original size:8 final size:7
Alignment explanation
Indices: 34158192--34158225 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
34158182 TAAATAAGGT
34158192 TTAGGGG
1 TTAGGGG
34158199 TTAGGGG
1 TTAGGGG
34158206 TTAGGGG
1 TTAGGGG
*
34158213 TTAAGGG
1 TTAGGGG
34158220 TTAGGG
1 TTAGGG
34158226 ATTCAGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.53, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:34158342 original size:83 final size:84
Alignment explanation
Indices: 34158212--34158463 Score: 294
Period size: 83 Copynumber: 3.0 Consensus size: 84
34158202 GGGGTTAGGG
* ** ** * *
34158212 GTTAAGGGTTAGGGATTCAGGATTGGGTTATGG-TTTAGGGTTTAGATTAATTACTATTTTTTAA
1 GTTAGGGGTTAGGGATTTGGGATCAGGTTA-GGATTTAGGGTTTAGATTAATTAGTACTTTTTAA
34158276 TTTATATATTAAATAAAG-T
65 TTTATATATTAAATAAAGTT
*
34158295 -TTAGGGGTTAGGGATTTGGGATCAGGTTTAGGATTTAGGGTTTAGATTAATTAGTGCTTTTTAA
1 GTTAGGGGTTAGGGATTTGGGATCAGG-TTAGGATTTAGGGTTTAGATTAATTAGTACTTTTTAA
*
34158359 TTTACATATTAAATAAAGTTT
65 TTTATATATTAAATAAAG-TT
* * * * *
34158380 AGAGGTTAGGGGTTAGGGATTTGGGGTCAGGTTAGGGTTTAAGATTTGGATTAATTAGTACTTTT
1 ----GTTAGGGGTTAGGGATTTGGGATCAGGTTAGGATTTAGGGTTTAGATTAATTAGTACTTTT
34158445 TAATTTATATATTAAATAA
62 TAATTTATATATTAAATAA
34158464 GTTCTTTATA
Statistics
Matches: 144, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
82 23 0.16
83 48 0.33
85 1 0.01
89 47 0.33
90 25 0.17
ACGTcount: A:0.29, C:0.03, G:0.25, T:0.43
Consensus pattern (84 bp):
GTTAGGGGTTAGGGATTTGGGATCAGGTTAGGATTTAGGGTTTAGATTAATTAGTACTTTTTAAT
TTATATATTAAATAAAGTT
Found at i:34158460 original size:89 final size:90
Alignment explanation
Indices: 34158295--34158463 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 90
34158285 TAAATAAAGT
* * *
34158295 TTAGGGGTTAGGGATTTGGGATCAGGTTTAGGATTTAGGGTTTAGATTAATTAGTGCTTTTTAAT
1 TTAGGGGTTAGGGATTTGGGATCAGGTTTAGGATTTAAGATTTAGATTAATTAGTACTTTTTAAT
34158360 TTACATATTAAATAAAGTTTAGAGG
66 TTACATATTAAATAAAGTTTAGAGG
* * *
34158385 TTAGGGGTTAGGGATTTGGGGTCAGG-TTAGGGTTTAAGATTTGGATTAATTAGTACTTTTTAAT
1 TTAGGGGTTAGGGATTTGGGATCAGGTTTAGGATTTAAGATTTAGATTAATTAGTACTTTTTAAT
*
34158449 TTATATATTAAATAA
66 TTACATATTAAATAA
34158464 GTTCTTTATA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 47 0.65
90 25 0.35
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.42
Consensus pattern (90 bp):
TTAGGGGTTAGGGATTTGGGATCAGGTTTAGGATTTAAGATTTAGATTAATTAGTACTTTTTAAT
TTACATATTAAATAAAGTTTAGAGG
Found at i:34158565 original size:21 final size:21
Alignment explanation
Indices: 34158512--34158565 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
34158502 TAAAGATTAC
34158512 TAATTTAAAA-TTGATATGCAA
1 TAATTTAAAATTTGATAT-CAA
*
34158533 T-ATATAATAATTTGAATAT-AA
1 TAATTTAA-AATTTG-ATATCAA
34158554 TAATTTAAAATT
1 TAATTTAAAATT
34158566 GTAAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.19
21 10 0.37
22 8 0.30
23 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATTTAAAATTTGATATCAA
Found at i:34158583 original size:10 final size:9
Alignment explanation
Indices: 34158560--34158600 Score: 64
Period size: 9 Copynumber: 4.4 Consensus size: 9
34158550 ATAATAATTT
34158560 AAAATTGTA
1 AAAATTGTA
34158569 AAAATTGTAA
1 AAAATTGT-A
34158579 AAAATTGTA
1 AAAATTGTA
*
34158588 AAAATTATA
1 AAAATTGTA
34158597 AAAA
1 AAAA
34158601 ATAAAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 21 0.70
10 9 0.30
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (9 bp):
AAAATTGTA
Found at i:34158584 original size:19 final size:19
Alignment explanation
Indices: 34158560--34158602 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
34158550 ATAATAATTT
*
34158560 AAAATTGTAAAAATTGTAA
1 AAAATTGTAAAAATTATAA
34158579 AAAATTGTAAAAATTATAA
1 AAAATTGTAAAAATTATAA
34158598 AAAAT
1 AAAAT
34158603 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
AAAATTGTAAAAATTATAA
Found at i:34158632 original size:19 final size:20
Alignment explanation
Indices: 34158588--34158627 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
34158578 AAAAATTGTA
34158588 AAAATTATAAAAAATAAAAAT
1 AAAATTA-AAAAAATAAAAAT
*
34158609 AAAATTAAAAAATTAAAAA
1 AAAATTAAAAAAATAAAAA
34158628 GAAATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAATTAAAAAAATAAAAAT
Found at i:34158637 original size:19 final size:19
Alignment explanation
Indices: 34158596--34158637 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
34158586 TAAAAATTAT
34158596 AAAAAATAAAAATAAAATTA
1 AAAAAATAAAAATAAAA-TA
* *
34158616 AAAAATTAAAAA-GAAATA
1 AAAAAATAAAAATAAAATA
34158634 AAAA
1 AAAA
34158638 CACTAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 3 0.15
20 11 0.55
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (19 bp):
AAAAAATAAAAATAAAATA
Found at i:34159129 original size:199 final size:199
Alignment explanation
Indices: 34158789--34159540 Score: 1168
Period size: 199 Copynumber: 3.8 Consensus size: 199
34158779 CGTTTTTGTT
* *
34158789 AAAAACGCCACAAAATATTCTTAATAATGAAGACAAAACAGTGCAGTTTTTGGCTGCGAATTTAA
1 AAAAACGCCACAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAA
*
34158854 TGGGTTTTGCGGCGCT-AAGGTAAAAACGCCGCTAAAGGTGGTCATTAGTGGCGCTAAGGAAAAA
66 TGGGTTTTGCGGCGCTAAAGG-AAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAA
* * *
34158918 ACGCCGCAAAGTTCTGTTCTCAGTTTTCATAAAATGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
130 AAGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAATGGTGTCGTTTTGGCTGGGCATTAGTGGCGC
34158983 TACTA
195 TACTA
* * * *
34158988 AAAAACGCCGCAAAAAATTCTTAATAATGAAGATAAAACGGTGCAATTTTTGGCTGTGAATTTAA
1 AAAAACGCCACAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAA
* * * *
34159053 TGGGTTTTACGGCTCTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGACGCTAAGGAAAAAA
66 TGGGTTTTGCGGCGCTAAAGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAAA
*
34159118 AGCCGCAAAGTTTTGTTCTCAGTTTTCGTAAAATGGTGTCGTTTTGGCTGGGCATTAGTGGCGCT
131 AGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAATGGTGTCGTTTTGGCTGGGCATTAGTGGCGCT
34159183 ACTA
196 ACTA
* *
34159187 AAAAACGCCACAAAAAATTCTTAATAATGAAGACAAAACGATGCAGTTTTTGGCTGTGAATTTAA
1 AAAAACGCCACAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAA
*
34159252 TGGGTTTTGCGGCGCTAAAGGAAAAATGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAAA
66 TGGGTTTTGCGGCGCTAAAGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAAA
* *
34159317 CGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGGCTGGGCATTAGTGGCGCT
131 AGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAATGGTGTCGTTTTGGCTGGGCATTAGTGGCGCT
34159382 ACTA
196 ACTA
* ** * *
34159386 AAAAACACCGA-AAAATGTTCTTAATAATAAAGACAAAACGGTGCAGTTTTTAGCTGCGAATTTA
1 AAAAACGCC-ACAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTA
* * * **
34159450 ATGGGTCTTGCGGCACTAAAGTAAAAACGCCGCTAAATATGGTCATTAGCGGCGCTAAGGAACAA
65 ATGGGTTTTGCGGCGCTAAAGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAA-AA
* *
34159515 ACA-CCGCAAAGTTATGTTCTCAGTTT
129 AAAGCCGCAAAGTTCTGTTCTCAGTTT
34159541 ATATATCTAT
Statistics
Matches: 507, Mismatches: 43, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
199 500 0.99
200 7 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (199 bp):
AAAAACGCCACAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAA
TGGGTTTTGCGGCGCTAAAGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAAA
AGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAATGGTGTCGTTTTGGCTGGGCATTAGTGGCGCT
ACTA
Found at i:34159674 original size:2 final size:2
Alignment explanation
Indices: 34159669--34159695 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
34159659 TTCTTCTCCA
34159669 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
34159696 TTTCACTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:34162145 original size:21 final size:21
Alignment explanation
Indices: 34162102--34162148 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
34162092 TTAAATTTGA
* *
34162102 AATTTTACAATTTAATCATCT
1 AATTTTACAATATAATCAACT
* *
34162123 AATTTTACAATATCATTAACT
1 AATTTTACAATATAATCAACT
34162144 AATTT
1 AATTT
34162149 AAATAGTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTTTACAATATAATCAACT
Found at i:34162469 original size:28 final size:28
Alignment explanation
Indices: 34162409--34162463 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
34162399 TTGTCATTCT
* ***
34162409 GCTATAATTCATGCCTTGTCTTTTAATC
1 GCTATAATTCATGCCATGTCTGCAAATC
34162437 GCTATAATTCATGCCATGTCTGCAAAT
1 GCTATAATTCATGCCATGTCTGCAAAT
34162464 GACTATGGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (28 bp):
GCTATAATTCATGCCATGTCTGCAAATC
Found at i:34162812 original size:46 final size:46
Alignment explanation
Indices: 34162761--34162934 Score: 136
Period size: 46 Copynumber: 3.6 Consensus size: 46
34162751 AAAAAATGTC
* * *
34162761 CAACTTAATAACTTATATAATTCACATAATAACTTAAATAACTTAA
1 CAACTTAACAACTCACATAATTCACATAATAACTTAAATAACTTAA
* *
34162807 CAACTTAACAACTCACATAATTTACATAAT-ACATATATATATGTCATAC-CATA
1 CAACTTAACAACTCACATAATTCACATAATAAC-T-TA-A-A--T-A-ACTTA-A
* * * * *
34162860 TAACTTAATAACTTATATAATTCACATAATAACTTACATAACTTAA
1 CAACTTAACAACTCACATAATTCACATAATAACTTAAATAACTTAA
* * *
34162906 TAATTTAACAACTCACATAATTTACATAA
1 CAACTTAACAACTCACATAATTCACATAA
34162935 CTTAATAATT
Statistics
Matches: 100, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
45 2 0.02
46 54 0.54
47 4 0.04
48 2 0.02
49 1 0.01
50 1 0.01
51 1 0.01
52 4 0.04
53 29 0.29
54 2 0.02
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.34
Consensus pattern (46 bp):
CAACTTAACAACTCACATAATTCACATAATAACTTAAATAACTTAA
Found at i:34162879 original size:17 final size:17
Alignment explanation
Indices: 34162859--34162942 Score: 55
Period size: 17 Copynumber: 4.7 Consensus size: 17
34162849 GTCATACCAT
*
34162859 ATAACTTAATAACTTAT
1 ATAACTTAATAACTTAC
34162876 ATAA-TTCACATAATAACTTAC
1 ATAACTT-A-AT---AACTTAC
*
34162897 ATAACTTAATAATTTA-
1 ATAACTTAATAACTTAC
* * *
34162913 ACAACTCACATAATTTAC
1 ATAACTTA-ATAACTTAC
34162931 ATAACTTAATAA
1 ATAACTTAATAA
34162943 TTTTAAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
16 8 0.15
17 22 0.42
18 8 0.15
20 2 0.04
21 11 0.21
22 2 0.04
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAACTTAATAACTTAC
Found at i:34162900 original size:9 final size:8
Alignment explanation
Indices: 34162886--34162942 Score: 51
Period size: 9 Copynumber: 6.8 Consensus size: 8
34162876 ATAATTCACA
34162886 TAATAACT
1 TAATAACT
34162894 TACATAACT
1 TA-ATAACT
*
34162903 TAATAATT
1 TAATAACT
*
34162911 TAACAACT
1 TAATAACT
* *
34162919 CACATAATT
1 TA-ATAACT
34162928 TACATAACT
1 TA-ATAACT
34162937 TAATAA
1 TAATAA
34162943 TTTTAAAATA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
8 18 0.46
9 21 0.54
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (8 bp):
TAATAACT
Found at i:34162918 original size:25 final size:26
Alignment explanation
Indices: 34162890--34162939 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
34162880 TTCACATAAT
* *
34162890 AACTTACATAACTTA-ATAATTTAAC
1 AACTCACATAACTTACATAACTTAAC
*
34162915 AACTCACATAATTTACATAACTTAA
1 AACTCACATAACTTACATAACTTAA
34162940 TAATTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (26 bp):
AACTCACATAACTTACATAACTTAAC
Found at i:34162936 original size:34 final size:36
Alignment explanation
Indices: 34162859--34162945 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 36
34162849 GTCATACCAT
* * *
34162859 ATAACTTAATAACTTATATAATTCACATAATAACTTAC
1 ATAACTTAATAATTTATACAACTCACATAAT-A-TTAC
34162897 ATAACTTAATAATTTA-ACAACTCACATAAT-TTAC
1 ATAACTTAATAATTTATACAACTCACATAATATTAC
34162931 ATAACTTAATAATTT
1 ATAACTTAATAATTT
34162946 TAAAATATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
34 19 0.41
37 12 0.26
38 15 0.33
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (36 bp):
ATAACTTAATAATTTATACAACTCACATAATATTAC
Found at i:34162943 original size:17 final size:17
Alignment explanation
Indices: 34162886--34162945 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
34162876 ATAATTCACA
*
34162886 TAATAACTTACATAACT
1 TAATAATTTACATAACT
*
34162903 TAATAATTTA-ACAACT
1 TAATAATTTACATAACT
*
34162919 CACATAATTTACATAACT
1 TA-ATAATTTACATAACT
34162937 TAATAATTT
1 TAATAATTT
34162946 TAAAATATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 6 0.17
17 24 0.67
18 6 0.17
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATTTACATAACT
Found at i:34163052 original size:17 final size:17
Alignment explanation
Indices: 34163030--34163100 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 17
34163020 TGACTCACAC
34163030 AATAACTTACATAACTT
1 AATAACTTACATAACTT
* *
34163047 AATAACTTATATATA-TG
1 AATAACTTACATA-ACTT
* *
34163064 CATAACTTA-ATAACTC
1 AATAACTTACATAACTT
* *
34163080 ATATTATTTACATAACTT
1 A-ATAACTTACATAACTT
34163098 AAT
1 AAT
34163101 CATTGTAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 4 0.10
17 29 0.69
18 8 0.19
ACGTcount: A:0.45, C:0.14, G:0.01, T:0.39
Consensus pattern (17 bp):
AATAACTTACATAACTT
Found at i:34163073 original size:25 final size:26
Alignment explanation
Indices: 34163037--34163100 Score: 94
Period size: 25 Copynumber: 2.5 Consensus size: 26
34163027 CACAATAACT
*
34163037 TACATAACTTAATAACTTATA-TATA
1 TACATAACTTAATAACTCATATTATA
* *
34163062 TGCATAACTTAATAACTCATATTATT
1 TACATAACTTAATAACTCATATTATA
34163088 TACATAACTTAAT
1 TACATAACTTAAT
34163101 CATTGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (26 bp):
TACATAACTTAATAACTCATATTATA
Found at i:34163662 original size:43 final size:43
Alignment explanation
Indices: 34163603--34163785 Score: 269
Period size: 43 Copynumber: 4.3 Consensus size: 43
34163593 TACCAAACAA
*
34163603 TAGCGGCGTTTGT-GGGAGAAGCGCCGCTAAAGAACATGGCCTT
1 TAGCGGCGTTT-TCGGGAAAAGCGCCGCTAAAGAACATGGCCTT
*
34163646 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGAACATGGCCTT
1 TAGCGGCGTTTTCGGGAAAAGCGCCGCTAAAGAACATGGCCTT
* * * *
34163689 TAGTGGCGTTTTCAGGAAAAGCGCCGCTAAAGAATATGGCCAT
1 TAGCGGCGTTTTCGGGAAAAGCGCCGCTAAAGAACATGGCCTT
* * *
34163732 TAGCAGCGTTTTCGGGGAAAGCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTTCGGGAAAAGCGCCGCTAAAGAACATGGCCTT
34163775 TAGCGGCGTTT
1 TAGCGGCGTTT
34163786 ATTTCTATAA
Statistics
Matches: 125, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 1 0.01
43 124 0.99
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.23
Consensus pattern (43 bp):
TAGCGGCGTTTTCGGGAAAAGCGCCGCTAAAGAACATGGCCTT
Found at i:34166882 original size:63 final size:63
Alignment explanation
Indices: 34166807--34166977 Score: 184
Period size: 63 Copynumber: 2.7 Consensus size: 63
34166797 GTGTTGATGT
* *
34166807 AGGGAATGATTGTGCATGTTGTGGTGCTTGTGTAAAATAAACT-G-GTGCTAAATGTGTTAATGC
1 AGGGAATGATTGTGCATGTTGTGATGCTTGTGTAAAATAAACTAGAGT-CTAAA-GTGTTAATAC
* * * * * * * *
34166870 ATGGAATGATTGTACATGTTGTGTTGCTTATGTAAAATAAGCTAGAGTTTTAAGTGTTGATAC
1 AGGGAATGATTGTGCATGTTGTGATGCTTGTGTAAAATAAACTAGAGTCTAAAGTGTTAATAC
** * *
34166933 AGGGAATGATTGTGTGTGATGTGATGCTTGTGTTAAATAAACTAG
1 AGGGAATGATTGTGCATGTTGTGATGCTTGTGTAAAATAAACTAG
34166978 GTTAGAACCA
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
63 82 0.93
64 4 0.05
65 2 0.02
ACGTcount: A:0.29, C:0.06, G:0.28, T:0.37
Consensus pattern (63 bp):
AGGGAATGATTGTGCATGTTGTGATGCTTGTGTAAAATAAACTAGAGTCTAAAGTGTTAATAC
Found at i:34171607 original size:9 final size:9
Alignment explanation
Indices: 34171589--34171629 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
34171579 ATTTTTTGGA
34171589 TTTTA-AAT
1 TTTTATAAT
*
34171597 TTTTATTAT
1 TTTTATAAT
34171606 TTTTATAAT
1 TTTTATAAT
34171615 TTTTA-AAT
1 TTTTATAAT
34171623 TATTTAT
1 T-TTTAT
34171630 TGGAATGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 9 0.32
9 19 0.68
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTATAAT
Found at i:34173158 original size:2 final size:2
Alignment explanation
Indices: 34173153--34173199 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
34173143 ATAAACCAAA
34173153 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34173195 AT AT A
1 AT AT A
34173200 AGAGAAGCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:34177411 original size:30 final size:29
Alignment explanation
Indices: 34177349--34177439 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 29
34177339 ATTTCACACA
* *
34177349 AAATTTCTTCAAAATTTATCAAAAAACTCTC
1 AAATTTCTTCTAAATTTCTC--AAAACTCTC
*
34177380 AAATTTCTCTCTAAATTTCTCAAAGCTCTC
1 AAATTTCT-TCTAAATTTCTCAAAACTCTC
* *
34177410 AAAATTCTTTTTAAATTTCTCAAAACTCTC
1 AAATTTC-TTCTAAATTTCTCAAAACTCTC
34177440 TTTAATTAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
30 33 0.63
31 9 0.17
32 10 0.19
ACGTcount: A:0.37, C:0.22, G:0.01, T:0.40
Consensus pattern (29 bp):
AAATTTCTTCTAAATTTCTCAAAACTCTC
Found at i:34177945 original size:15 final size:15
Alignment explanation
Indices: 34177925--34177960 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
34177915 GCCAGTGGAT
34177925 GGGTCCACACTCACC
1 GGGTCCACACTCACC
34177940 GGGTCCACACTCACC
1 GGGTCCACACTCACC
34177955 GGGTCC
1 GGGTCC
34177961 GTTCAATCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.17, C:0.44, G:0.25, T:0.14
Consensus pattern (15 bp):
GGGTCCACACTCACC
Found at i:34179233 original size:18 final size:18
Alignment explanation
Indices: 34179210--34179244 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34179200 CCAGGTGCAT
*
34179210 ATCCTAGCCCTTATATGC
1 ATCCTAACCCTTATATGC
*
34179228 ATCCTAACTCTTATATG
1 ATCCTAACCCTTATATG
34179245 TTTCCTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.37
Consensus pattern (18 bp):
ATCCTAACCCTTATATGC
Found at i:34179525 original size:21 final size:21
Alignment explanation
Indices: 34179501--34179540 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
34179491 CAACCTGTGC
34179501 AACCACAACCCCCGTTGGAGT
1 AACCACAACCCCCGTTGGAGT
* *
34179522 AACCACAACCTCTGTTGGA
1 AACCACAACCCCCGTTGGA
34179541 AGCTGAACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.17
Consensus pattern (21 bp):
AACCACAACCCCCGTTGGAGT
Found at i:34183195 original size:126 final size:127
Alignment explanation
Indices: 34182786--34183294 Score: 714
Period size: 126 Copynumber: 4.1 Consensus size: 127
34182776 GGCCAAACAT
* *
34182786 GAACTACTGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * *
34182851 CTACTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTC--CTC-AAATT-TTTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTTCAG
* * *
34182909 GAATTACTGTAGAAAAAGAGCGTCCACGGGGGAGCTTTTTTCA-TCAATTTTGCTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAGTGCAT
* *
34182973 CCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAA-CGTCTTCTCAAAATTGTTTTTTT-AG
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTTCAG
* *
34183034 GAACTACTGTAGAAAAAGAGTGTCCACATGGGAGCTTTTTTCA-TCAATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAGTGCAT
* * * *
34183098 CCTGCTTGAAGTGTTTTTGACACTATTTGTTCAGAATCGTCTTCTTAAAATTATATTTTT-AA
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTTCAG
* * ** *
34183160 GAACTACTGTAGAAAAAGAGTGTTCACGTAAGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * *
34183225 CTGTTTGAAGCGTTTTTTACACTATTTGTTTAGAATCGTCTTCTCAAAATTA-TTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTTCAG
34183286 GAACTACTG
1 GAACTACTG
34183295 CAATAAAAAA
Statistics
Matches: 348, Mismatches: 30, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
122 5 0.01
123 91 0.26
124 3 0.01
125 105 0.30
126 143 0.41
127 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (127 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAATCGTCTTCTCAAAATTATTTTTTTCAG
Found at i:34183412 original size:34 final size:33
Alignment explanation
Indices: 34183369--34183467 Score: 135
Period size: 34 Copynumber: 2.9 Consensus size: 33
34183359 ATTGTTTTTA
*
34183369 AAAAAACTAAACCCAAATTTAATTAATTTTCTCT
1 AAAACACTAAACCCAAATTTAATTAATTTT-TCT
*
34183403 AAAACACTAAACCCAAATTTAATTAATTTATTTT
1 AAAACACTAAACCCAAATTTAATTAATTT-TTCT
* * *
34183437 AAACCCCTAAACCCTAATTTAATTAATTTTT
1 AAAACACTAAACCCAAATTTAATTAATTTTT
34183468 GAAAAAGAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
33 2 0.03
34 56 0.95
35 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.37
Consensus pattern (33 bp):
AAAACACTAAACCCAAATTTAATTAATTTTTCT
Found at i:34183543 original size:21 final size:21
Alignment explanation
Indices: 34183518--34183584 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
34183508 TAAAACCTAG
34183518 AACCCTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
*** *** **
34183539 AACCCTAAACCCTACAAACCT
1 AACCCTAAATTATTTTAACAA
34183560 AACCCTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
34183581 AACC
1 AACC
34183585 TTAACCCTAA
Statistics
Matches: 30, Mismatches: 16, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCTAAATTATTTTAACAA
Found at i:34183603 original size:42 final size:42
Alignment explanation
Indices: 34183509--34183599 Score: 139
Period size: 42 Copynumber: 2.1 Consensus size: 42
34183499 AAAAATTCCT
34183509 AAAACCTAGAACCCTAAATTATTTTAACAAAACCCTAAACCCTA
1 AAAACCT--AACCCTAAATTATTTTAACAAAACCCTAAACCCTA
* *
34183553 CAAACCTAACCCTAAATTATTTTAACAAAA-CCTTAACCCTA
1 AAAACCTAACCCTAAATTATTTTAACAAAACCCTAAACCCTA
34183594 AAAACC
1 AAAACC
34183600 CTAAACCAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 15 0.34
42 23 0.52
44 6 0.14
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (42 bp):
AAAACCTAACCCTAAATTATTTTAACAAAACCCTAAACCCTA
Found at i:34190557 original size:37 final size:37
Alignment explanation
Indices: 34190507--34190582 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
34190497 TAATTGGGTG
34190507 AATTTTGTTGATATTACGATAATAGGCATGATTTAAT
1 AATTTTGTTGATATTACGATAATAGGCATGATTTAAT
34190544 AATTTTGTTGATATTACGATAATAGGCATGATTTAAT
1 AATTTTGTTGATATTACGATAATAGGCATGATTTAAT
34190581 AA
1 AA
34190583 AGTATGCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (37 bp):
AATTTTGTTGATATTACGATAATAGGCATGATTTAAT
Found at i:34190575 original size:20 final size:20
Alignment explanation
Indices: 34190515--34190575 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
34190505 TGAATTTTGT
34190515 TGATATTACGATAATAGGCA
1 TGATATTACGATAATAGGCA
** *
34190535 TGAT-TTA--ATAATTTTG-T
1 TGATATTACGATAA-TAGGCA
34190552 TGATATTACGATAATAGGCA
1 TGATATTACGATAATAGGCA
34190572 TGAT
1 TGAT
34190576 TTAATAAAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
17 8 0.27
18 5 0.17
19 5 0.17
20 12 0.40
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (20 bp):
TGATATTACGATAATAGGCA
Found at i:34213475 original size:20 final size:21
Alignment explanation
Indices: 34213450--34213489 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34213440 TTACTGATAC
34213450 CTCTA-CCAAAGTATCAATAT
1 CTCTACCCAAAGTATCAATAT
*
34213470 CTCTACCCCAAGTATCAATA
1 CTCTACCCAAAGTATCAATA
34213490 CTCATGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.28
Consensus pattern (21 bp):
CTCTACCCAAAGTATCAATAT
Done.