Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 118 of 170
Found at i:36196708 original size:24 final size:24
Alignment explanation
Indices: 36196676--36196753 Score: 76
Period size: 24 Copynumber: 3.5 Consensus size: 24
36196666 GGGATGAGAA
36196676 GAAGAAGATACGTACATACTCGGT
1 GAAGAAGATACGTACATACTCGGT
** **
36196700 GAAGAAGATAC--AGGTA---GAA
1 GAAGAAGATACGTACATACTCGGT
*
36196719 GAAGAAGATACGTGCATACTCGGT
1 GAAGAAGATACGTACATACTCGGT
36196743 GAAGAAGATAC
1 GAAGAAGATAC
36196754 AGGCAGACTA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
19 12 0.30
21 2 0.05
22 3 0.08
24 23 0.57
ACGTcount: A:0.42, C:0.13, G:0.28, T:0.17
Consensus pattern (24 bp):
GAAGAAGATACGTACATACTCGGT
Found at i:36196722 original size:43 final size:43
Alignment explanation
Indices: 36196672--36196756 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
36196662 ATATGGGATG
36196672 AGAAGAAGAAGATACGTACATACTCGGTGAAGAAGATACAGGT
1 AGAAGAAGAAGATACGTACATACTCGGTGAAGAAGATACAGGT
*
36196715 AGAAGAAGAAGATACGTGCATACTCGGTGAAGAAGATACAGG
1 AGAAGAAGAAGATACGTACATACTCGGTGAAGAAGATACAGG
36196757 CAGACTAGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.44, C:0.12, G:0.29, T:0.15
Consensus pattern (43 bp):
AGAAGAAGAAGATACGTACATACTCGGTGAAGAAGATACAGGT
Found at i:36196767 original size:24 final size:24
Alignment explanation
Indices: 36196697--36196774 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
36196687 GTACATACTC
*
36196697 GGTGAAGAAGATACAGGTAGA--A
1 GGTGAAGAAGATACAGGCAGACTA
* *
36196719 ---GAAGAAGATAC-GTGCATACTC
1 GGTGAAGAAGATACAG-GCAGACTA
36196740 GGTGAAGAAGATACAGGCAGACTA
1 GGTGAAGAAGATACAGGCAGACTA
36196764 GGTGAAGAAGA
1 GGTGAAGAAGA
36196775 AGGAATAAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
18 1 0.02
19 14 0.32
24 28 0.64
25 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.33, T:0.14
Consensus pattern (24 bp):
GGTGAAGAAGATACAGGCAGACTA
Found at i:36203237 original size:22 final size:25
Alignment explanation
Indices: 36203211--36203262 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 25
36203201 TTATAATGAT
36203211 TTAATTTA-AAAATATA-TA-TAAA
1 TTAATTTATAAAATATATTATTAAA
*
36203233 TTAA-TTATAAAGTATATTATTAAA
1 TTAATTTATAAAATATATTATTAAA
36203257 TTAATT
1 TTAATT
36203263 ATATTATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 11 0.44
23 2 0.08
24 8 0.32
25 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TTAATTTATAAAATATATTATTAAA
Found at i:36203251 original size:12 final size:11
Alignment explanation
Indices: 36203227--36203265 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
36203217 TAAAAATATA
36203227 TATAAATTAAT
1 TATAAATTAAT
*
36203238 TATAAAGTATAT
1 TATAAATTA-AT
36203250 TATTAAATTAAT
1 TA-TAAATTAAT
36203262 TATA
1 TATA
36203266 TTATAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:36203267 original size:17 final size:18
Alignment explanation
Indices: 36203245--36203280 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
36203235 AATTATAAAG
*
36203245 TATATTATTAA-ATTAAT
1 TATATTATAAATATTAAT
36203262 TATATTATAAATATTAAT
1 TATATTATAAATATTAAT
36203280 T
1 T
36203281 GAGAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATATTATAAATATTAAT
Found at i:36217945 original size:3 final size:3
Alignment explanation
Indices: 36217937--36217979 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
36217927 GCTTCCTTTG
36217937 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
36217980 TGCTTTCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:36218697 original size:54 final size:54
Alignment explanation
Indices: 36218614--36218750 Score: 161
Period size: 54 Copynumber: 2.5 Consensus size: 54
36218604 AAAGCTTGGT
* *
36218614 TTCACTAAAAAGTGAGCTTGTGTGCTTGAAGAGGCAAAACCTATAAAGGCTT-AA
1 TTCACTAAAAAGTGATC-TATGTGCTTGAAGAGGCAAAACCTATAAAGGCTTGAA
* ** *
36218668 CTTCACTAAAATGTGATCTATGTGCTTGAAGAGGTTAGACCTATAAAGGCTTGAA
1 -TTCACTAAAAAGTGATCTATGTGCTTGAAGAGGCAAAACCTATAAAGGCTTGAA
*
36218723 TTCAGTAAAAAGTGAGTC-ATCGTGCTTG
1 TTCACTAAAAAGTGA-TCTAT-GTGCTTG
36218751 GAAAGTCTTG
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
54 45 0.63
55 26 0.37
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (54 bp):
TTCACTAAAAAGTGATCTATGTGCTTGAAGAGGCAAAACCTATAAAGGCTTGAA
Found at i:36228444 original size:15 final size:15
Alignment explanation
Indices: 36228424--36228453 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36228414 GTGATTGATC
36228424 GAAGTTGTATGACCT
1 GAAGTTGTATGACCT
36228439 GAAGTTGTATGACCT
1 GAAGTTGTATGACCT
36228454 AAAGGAGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (15 bp):
GAAGTTGTATGACCT
Found at i:36228776 original size:30 final size:30
Alignment explanation
Indices: 36228742--36228829 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
36228732 ATAAACACAA
** *
36228742 AAAAATTTAGAAAATTAAAAAAAATATTTT
1 AAAAATTTTTAAAAATAAAAAAAATATTTT
*
36228772 AAAAATATTTTAAAAAT-AAAAAAGTATTTT
1 AAAAAT-TTTTAAAAATAAAAAAAATATTTT
*
36228802 AAAATATTTTTAAAAATAAAAAATATAT
1 AAAA-ATTTTTAAAAATAAAAAAAATAT
36228830 ATCTATTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
30 32 0.65
31 17 0.35
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (30 bp):
AAAAATTTTTAAAAATAAAAAAAATATTTT
Found at i:36228777 original size:11 final size:11
Alignment explanation
Indices: 36228761--36228819 Score: 65
Period size: 11 Copynumber: 5.6 Consensus size: 11
36228751 GAAAATTAAA
36228761 AAAAATATTTT
1 AAAAATATTTT
36228772 AAAAATATTTT
1 AAAAATATTTT
36228783 AAAAATA----
1 AAAAATATTTT
36228790 AAAAAGTATTTT
1 AAAAA-TATTTT
36228802 -AAAATATTTTT
1 AAAAATA-TTTT
36228813 AAAAATA
1 AAAAATA
36228820 AAAAATATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
7 5 0.12
8 2 0.05
10 2 0.05
11 26 0.63
12 6 0.15
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:36228793 original size:29 final size:29
Alignment explanation
Indices: 36228760--36228827 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 29
36228750 AGAAAATTAA
36228760 AAAAAATATTTTAAAA-ATATTTTAAAAAT
1 AAAAAATATTTTAAAATAT-TTTTAAAAAT
36228789 AAAAAAGTATTTTAAAATATTTTTAAAAAT
1 AAAAAA-TATTTTAAAATATTTTTAAAAAT
36228819 AAAAAATAT
1 AAAAAATAT
36228828 ATATCTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
29 9 0.24
30 26 0.70
31 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (29 bp):
AAAAAATATTTTAAAATATTTTTAAAAAT
Found at i:36231749 original size:21 final size:21
Alignment explanation
Indices: 36231723--36231766 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
36231713 TAATTTAAAT
36231723 TTGTAAGACTTCAATATTATA
1 TTGTAAGACTTCAATATTATA
36231744 TTGTAAGACTTCAATATTATA
1 TTGTAAGACTTCAATATTATA
36231765 TT
1 TT
36231767 CGAAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (21 bp):
TTGTAAGACTTCAATATTATA
Found at i:36232262 original size:38 final size:39
Alignment explanation
Indices: 36232195--36232269 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 39
36232185 TTTTAATCAT
36232195 ATAGTTGCTGTTAACTCATTTAATTTTTTTTTATATCAAC
1 ATAGTTGCTGTTAACTCATTTAA-TTTTTTTTATATCAAC
36232235 ATAGTTGCTGTTAACTCATTTAA-TTTTTTTATATC
1 ATAGTTGCTGTTAACTCATTTAATTTTTTTTATATC
36232270 GACTTGGGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 12 0.34
40 23 0.66
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.53
Consensus pattern (39 bp):
ATAGTTGCTGTTAACTCATTTAATTTTTTTTATATCAAC
Found at i:36232499 original size:56 final size:56
Alignment explanation
Indices: 36232357--36232526 Score: 183
Period size: 56 Copynumber: 3.1 Consensus size: 56
36232347 ATGGTATGTT
* * * *
36232357 TTTTGTAATCGTGCCTATCTAACAGGCGCCAATCAAATTTTTATATT-AAAAA-A--A
1 TTTT-TAATCGCGCCTATCTGACAGGAGCAAATC-AATTTTTATATTAAAAAATATTA
* *
36232411 -TTTTAATCGCGCCTATCTGACA-AACGCGAATCAATTTTTATATTAAAAAATATTA
1 TTTTTAATCGCGCCTATCTGACAGGA-GCAAATCAATTTTTATATTAAAAAATATTA
* *
36232466 TTTTTAATCGCGTCTATTTGACAGGAGCAAATCAATTTTTTATATTAAAAAATATT-
1 TTTTTAATCGCGCCTATCTGACAGGAGCAAATCAA-TTTTTATATTAAAAAATATTA
36232522 TTTTT
1 TTTTT
36232527 GTTTAAATAA
Statistics
Matches: 99, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
51 12 0.12
52 28 0.28
53 4 0.04
55 1 0.01
56 33 0.33
57 21 0.21
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (56 bp):
TTTTTAATCGCGCCTATCTGACAGGAGCAAATCAATTTTTATATTAAAAAATATTA
Found at i:36232904 original size:18 final size:18
Alignment explanation
Indices: 36232829--36232897 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
36232819 AGCTCTCAGG
* *
36232829 CATTCTTCTCCATTCATT
1 CATTCTTCTCCCTTCATC
*
36232847 CATTATTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
* ***
36232865 CAGTAAGCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
36232883 CATTCTTCTCCCTTC
1 CATTCTTCTCCCTTC
36232898 CTTCATTACT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.16, C:0.39, G:0.03, T:0.42
Consensus pattern (18 bp):
CATTCTTCTCCCTTCATC
Found at i:36236719 original size:11 final size:11
Alignment explanation
Indices: 36236703--36236736 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
36236693 GGATCATTCT
36236703 AAAAAAATGAC
1 AAAAAAATGAC
* *
36236714 AAAAAAAAGAG
1 AAAAAAATGAC
36236725 AAAAAAATGAC
1 AAAAAAATGAC
36236736 A
1 A
36236737 TTTTGCATTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (11 bp):
AAAAAAATGAC
Found at i:36237104 original size:132 final size:132
Alignment explanation
Indices: 36236863--36237558 Score: 928
Period size: 132 Copynumber: 5.3 Consensus size: 132
36236853 GAATAGACCA
* *
36236863 TTGAAGATTGTAGATCCTGTCTCTCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * *
36236928 TTCCCAAAATAGTGAAGAAGCAGATTTAAGTCATTAGTCTTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
36236993 GG
131 GG
* * * * *
36236995 TTGAAGATTGCAGATCTTGTCTCCCTAAGTAGTAGCGGAGTAGATCAAAGACGGCGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
36237060 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
36237125 GG
131 GG
*
36237127 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * *
36237192 TTCCCAAGATAGTGGAGAAGCAAATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAATA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
36237257 GG
131 GG
* * * *
36237259 TTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATC----A-TG-G-ATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * * * * * *
36237317 TTCTCAAGGTAGTAGG-GAAGTAAATTTAAGCC--T-CTCCTATTTCTCTGAGCAGTAGTGGAGT
66 TTCCCAAGATAGT-GGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGT
36237378 AGG
130 AGG
* * *
36237381 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGGTCGAGGACGGCAAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * ***
36237446 TTCCTAAGATAGTAGTGAAGCAGATTTAAGCCACCGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
36237511 GG
131 GG
* * * * * *
36237513 TTGAATAATGTATATACTGTCTCCCTAAGCAGTAGTGGAACAGATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATC
36237559 ATGGATCTTA
Statistics
Matches: 497, Mismatches: 55, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
122 68 0.14
123 1 0.00
125 34 0.07
126 4 0.01
127 2 0.00
128 2 0.00
129 32 0.06
132 354 0.71
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (132 bp):
TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
GG
Found at i:36237457 original size:254 final size:256
Alignment explanation
Indices: 36236863--36237578 Score: 999
Period size: 254 Copynumber: 2.8 Consensus size: 256
36236853 GAATAGACCA
* *
36236863 TTGAAGATTGTAGATCCTGTCTCTCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * * *
36236928 TTCCCAAAATAGTGAAGAAGCAGATTTAAGTCATTAGTCTTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
* * * * * *
36236993 GGTTGAAGATTGCAGAT-CTTGTCTCCCTAAGTAGTAGCGGAGTAGATCAAAGACGGCGAATCTT
131 GGTTGAAGAATGTAGATAC-TGTCTCCCTAAGCAGTAGTGGAGCAGATC----A-TG-G-ATCTT
* *
36237057 ATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGA
188 ATCTTCCCAAGATAGTGGAGAAGCAAATTTAAGCCA-TACTCCTATCTCCCTGAGCAGCAGTGGA
36237122 GTAGG
252 GTAGG
*
36237127 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* *
36237192 TTCCCAAGATAGTGGAGAAGCAAATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAATA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
*
36237257 GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCTC
131 GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCCC
* * * * *
36237322 AAGGTAGTAGG-GAAGTAAATTTAAGCC-T-CTCCTATTTCTCTGAGCAGTAGTGGAGTAGG
196 AAGATAGT-GGAGAAGCAAATTTAAGCCATACTCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * *
36237381 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGGTCGAGGACGGCAAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * **
36237446 TTCCTAAGATAGTAGTGAAGCAGATTTAAGCCACCGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
* * *
36237511 GGTTGAATAATGTATATACTGTCTCCCTAAGCAGTAGTGGAACAGATCATGGATCTTATCTTCCC
131 GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCCC
36237576 AAG
196 AAG
36237579 TGGAGTGGAT
Statistics
Matches: 411, Mismatches: 39, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
254 210 0.51
255 1 0.00
257 33 0.08
258 3 0.01
259 1 0.00
260 1 0.00
264 161 0.39
265 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (256 bp):
TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCCC
AAGATAGTGGAGAAGCAAATTTAAGCCATACTCCTATCTCCCTGAGCAGCAGTGGAGTAGG
Found at i:36240201 original size:16 final size:16
Alignment explanation
Indices: 36240180--36240218 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
36240170 TTAACTCATT
*
36240180 TAATTTTTATATAATG
1 TAATTTTTATATAATA
36240196 TAATTTTTATATAATA
1 TAATTTTTATATAATA
36240212 TAATTTT
1 TAATTTT
36240219 ATTTGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TAATTTTTATATAATA
Found at i:36241364 original size:53 final size:53
Alignment explanation
Indices: 36241230--36241365 Score: 200
Period size: 53 Copynumber: 2.6 Consensus size: 53
36241220 ACCCGTTCAT
* * *
36241230 ACAGTTGGGGTTCCGCAGTTTTAGCCATACTGTATTGCGAACTTTGTCGGACG
1 ACAGTTGGGGGTCCGCAGTTTTAGCCATGCTGTATCGCGAACTTTGTCGGACG
* * * *
36241283 ACAGTTGGGGGTCTGTAGTTTTAGCCATGCTGTATCGTGAACTTTGTTGGACG
1 ACAGTTGGGGGTCCGCAGTTTTAGCCATGCTGTATCGCGAACTTTGTCGGACG
*
36241336 ACAGTTGGGGGTCCACAGTTTTAGCCATGC
1 ACAGTTGGGGGTCCGCAGTTTTAGCCATGC
36241366 AGTTTTAGCA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 73 1.00
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.32
Consensus pattern (53 bp):
ACAGTTGGGGGTCCGCAGTTTTAGCCATGCTGTATCGCGAACTTTGTCGGACG
Found at i:36242414 original size:28 final size:28
Alignment explanation
Indices: 36242374--36242432 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
36242364 CGCAAGAAGT
36242374 AGGATCTGTGTGTATTTTCCATAAAGCC
1 AGGATCTGTGTGTATTTTCCATAAAGCC
36242402 AGGATCTGTGTGTATTTTCCATAAAGCC
1 AGGATCTGTGTGTATTTTCCATAAAGCC
36242430 AGG
1 AGG
36242433 TTCCATCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (28 bp):
AGGATCTGTGTGTATTTTCCATAAAGCC
Found at i:36247236 original size:21 final size:22
Alignment explanation
Indices: 36247210--36247256 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
36247200 CTCTGCTCAA
*
36247210 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
36247231 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
36247253 ACTC
1 ACTC
36247257 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:36252641 original size:42 final size:42
Alignment explanation
Indices: 36252582--36252669 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
36252572 CGTTGCAAAC
36252582 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
1 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
36252624 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
1 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
36252666 AGAA
1 AGAA
36252670 GCATAATCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (42 bp):
AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
Found at i:36259244 original size:29 final size:31
Alignment explanation
Indices: 36259212--36259275 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
36259202 TTAACTTTTA
*
36259212 ATTTTT-TAAAATTTAA-AATTTTATTTA-AT
1 ATTTTTATAAAATTTAATAATGTT-TTTATAT
*
36259241 ATTTTTATAAATTTTAATAATGTTTTTATAT
1 ATTTTTATAAAATTTAATAATGTTTTTATAT
36259272 ATTT
1 ATTT
36259276 ATAATTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 6 0.20
30 13 0.43
31 11 0.37
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (31 bp):
ATTTTTATAAAATTTAATAATGTTTTTATAT
Found at i:36259261 original size:21 final size:20
Alignment explanation
Indices: 36259223--36259291 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 20
36259213 TTTTTTAAAA
*
36259223 TTTA-AAATTTTATTTAATATT
1 TTTATAAATTTTA-ATAAT-TT
36259244 TTTATAAATTTTAATAATGTT
1 TTTATAAATTTTAATAAT-TT
*
36259265 TTTATATA-TTT-ATAATTT
1 TTTATAAATTTTAATAATTT
*
36259283 TTTAAAAAT
1 TTTATAAAT
36259292 ATTTTTGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
18 8 0.20
19 5 0.12
20 3 0.07
21 17 0.41
22 8 0.20
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (20 bp):
TTTATAAATTTTAATAATTT
Found at i:36259293 original size:20 final size:19
Alignment explanation
Indices: 36259270--36259311 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36259260 ATGTTTTTAT
36259270 ATATTTATAATTTTTTAAAA
1 ATATTTATAA-TTTTTAAAA
* *
36259290 ATATTTTTGATTTTTAAAA
1 ATATTTATAATTTTTAAAA
36259309 ATA
1 ATA
36259312 AGCTTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATATTTATAATTTTTAAAA
Found at i:36259296 original size:29 final size:28
Alignment explanation
Indices: 36259233--36259296 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
36259223 TTTAAAATTT
* * *
36259233 TATTTAATATTTTTATAAATTTTAATAA
1 TATTTTATATATTTATAAATTTTAAAAA
* *
36259261 TGTTTTTATATATTTATAATTTTTTAAAAA
1 T-ATTTTATATATTTATAA-ATTTTAAAAA
36259291 TATTTT
1 TATTTT
36259297 TGATTTTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.04
29 18 0.64
30 9 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
TATTTTATATATTTATAAATTTTAAAAA
Found at i:36259305 original size:29 final size:27
Alignment explanation
Indices: 36259240--36259310 Score: 70
Period size: 30 Copynumber: 2.5 Consensus size: 27
36259230 TTTTATTTAA
* *
36259240 TATTTTTATAAATTTTAATAATGTTTT
1 TATTTTTATAAATTTTAAAAATATTTT
*
36259267 TATATATTTATAATTTTTTAAAAATATTTT
1 TAT-T-TTTATAA-ATTTTAAAAATATTTT
*
36259297 TGATTTTTAAAAAT
1 T-ATTTTTATAAAT
36259311 AAGCTTTGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
27 3 0.09
28 2 0.06
29 13 0.37
30 15 0.43
31 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (27 bp):
TATTTTTATAAATTTTAAAAATATTTT
Found at i:36259318 original size:20 final size:19
Alignment explanation
Indices: 36259281--36259319 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36259271 TATTTATAAT
**
36259281 TTTTTAAAAATATTTTTGA
1 TTTTTAAAAATAGCTTTGA
36259300 TTTTTAAAAATAAGCTTTGA
1 TTTTTAAAAAT-AGCTTTGA
36259320 AATGATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (19 bp):
TTTTTAAAAATAGCTTTGA
Found at i:36262413 original size:57 final size:57
Alignment explanation
Indices: 36262313--36262422 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
36262303 AGGTTTATGC
* *
36262313 GAGCTCTCCTCACGAGCTATCTTTGCGAGCACCCGGCACCCTAGCGGGGTCCCTCGT
1 GAGCTCTCCTCACGAGCTATCTTTGCGAACACCCAGCACCCTAGCGGGGTCCCTCGT
* * *
36262370 GAGCTCTCC-CAGCGAGCTATCTTTGTGAACATCCAGCATCCTAGCGGGGTCCC
1 GAGCTCTCCTCA-CGAGCTATCTTTGCGAACACCCAGCACCCTAGCGGGGTCCC
36262423 CAACGAACTA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 2 0.04
57 45 0.96
ACGTcount: A:0.16, C:0.36, G:0.25, T:0.22
Consensus pattern (57 bp):
GAGCTCTCCTCACGAGCTATCTTTGCGAACACCCAGCACCCTAGCGGGGTCCCTCGT
Found at i:36265375 original size:48 final size:48
Alignment explanation
Indices: 36265304--36265400 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
36265294 TTTCATACTT
36265304 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
1 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
36265352 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
1 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
36265400 A
1 A
36265401 GTTTTACTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (48 bp):
AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
Found at i:36265557 original size:69 final size:69
Alignment explanation
Indices: 36265379--36266352 Score: 860
Period size: 69 Copynumber: 14.2 Consensus size: 69
36265369 TTTGCTTGCA
* * * * * * * * * *
36265379 AACCTTATTTCTATAGCTGGGAGTTTTACTCTCGTTAACTATTTTAGATGTTGCGGCTATTCACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36265444 TACG
66 TGCG
* * ** * *
36265448 AACCTTG-TTTTATAGTTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCAACTATTCACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36265512 TGTG
66 TGCG
* * * * * *
36265516 AACTTTGTTTTTACAGCTGGGAGCTTTGCTCTCGTTAACTGTTTTAAAGGTTACGGCTTTTCACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
36265581 TGCG
66 TGCG
* ** * * ** *
36265585 AACCTTGTTTTTACAACTGGGAGCTTTATTCTTGCTAACTGTTTTAGAGGTTGCGACTCTTTGCT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36265650 TGTG
66 TGCG
* * * * * * * *
36265654 AATCTTG-TTTTATAGTTAGGAGATTTGCTCTCGCTAACTGTTTTAGAGGTTGTGGCTCTTCGCT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36265718 TGTG
66 TGCG
** * * * * * *
36265722 AATATT-TTTTTAAAACTGGGAGCTTTGCTCTCGCTAACTGTTTTAAAGGTTACTGCTCTTTACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36265786 TGTG
66 TGCG
* * * * * *
36265790 AACCTTTTTTTTATAGCTAGGAGCTTTGCTTTTGCTAACTGTTTTAGA-GTCTGTGGCTCTTCAC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGT-TGCGGCTCTTCAC
*
36265854 CTGCA
65 CTGCG
* * * * * * *
36265859 AACCTTATTTTTACAGTTGGGATCTTTGCTCTCGCTAATTGTTTTAGAGGTTACGGCTCTTTACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36265924 TACG
66 TGCG
* * * * * * *
36265928 AACCTTGTTTTTACAGTTGGGAGCTTTTCTCTCACTAACTATTTTAGAGGCTGCAGC-CATTCGC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTC-TTCAC
36265992 CTGCG
65 CTGCG
* * ** * * * * *
36265997 GACCTTGTTTTTACAACTGATAGATTTTCTCTCGCTAACTGTTTTAAAGGCTGCGGCTGTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
**
36266062 TATG
66 TGCG
* * * * * * *
36266066 AATCTTGTTTTTACAACTGGGAGCTTTTCTCTTGCTAACTATTTTAGAGGTTGTGGCTCTTCGCC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36266131 AGCG
66 TGCG
* * * * ** * * *
36266135 AACCTTATTTTTACAGTTAGAAGCTTTATTCTTGCTAACTGTTTTAGAGGCTGCGACTCTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36266200 TACG
66 TGCG
** * * * **
36266204 AACCTTGTTTTTACAGCTCAGAGCTTTGCTGTCGCTATCTATTTTAGAGGTTGCCACTCTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36266269 TGTG
66 TGCG
* * * *
36266273 AACCTTGTTTTTACAACTAGGAACTTTGCTCTCGTTAACTGTTTTAGAGGTTGCGGCTCTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
36266338 TACG
66 TGCG
36266342 AACCTTGTTTT
1 AACCTTGTTTT
36266353 CACCGACGAT
Statistics
Matches: 726, Mismatches: 172, Indels: 14
0.80 0.19 0.02
Matches are distributed among these distances:
68 167 0.23
69 557 0.77
70 2 0.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (69 bp):
AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
TGCG
Found at i:36279154 original size:33 final size:33
Alignment explanation
Indices: 36279107--36279333 Score: 117
Period size: 33 Copynumber: 6.5 Consensus size: 33
36279097 ATACGGCGGG
*
36279107 ATCAACACTTAGCAACCACCAATGATTCGGGGA
1 ATCAGCACTTAGCAACCACCAATGATTCGGGGA
36279140 ATCAGCACTTAGCAACC-CC------TCGGGAGA
1 ATCAGCACTTAGCAACCACCAATGATTCGGG-GA
* * *
36279167 ATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGA
1 ATCAGCACTTAGCAA-CCAC--CA-A--T--GATTC-GGGGA
* *
36279209 ATCAGCACTGAGCAACCACCAATGAGTCGGGGA
1 ATCAGCACTTAGCAACCACCAATGATTCGGGGA
* * * *
36279242 ATTAGCACTTAGCAACCTCTTTCACATTTAAGGTACGGTGGA
1 ATCAGCACTTAGCAACCAC---CA-A--T--GATTCGG-GGA
* * *
36279284 ATCAGCACTTAGCAACGACCAATGAATCGGCGA
1 ATCAGCACTTAGCAACCACCAATGATTCGGGGA
36279317 ATCAGCACTTAGCAACC
1 ATCAGCACTTAGCAACC
36279334 CCCTTTATAT
Statistics
Matches: 146, Mismatches: 22, Indels: 52
0.66 0.10 0.24
Matches are distributed among these distances:
26 5 0.03
27 17 0.12
28 2 0.01
29 1 0.01
31 1 0.01
32 2 0.01
33 54 0.37
34 7 0.05
36 4 0.03
37 1 0.01
38 2 0.01
39 5 0.03
41 7 0.05
42 36 0.25
43 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (33 bp):
ATCAGCACTTAGCAACCACCAATGATTCGGGGA
Found at i:36279162 original size:26 final size:27
Alignment explanation
Indices: 36279133--36279185 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
36279123 CACCAATGAT
36279133 TCGGG-GAATCAGCACTTAGCAACCCC
1 TCGGGAGAATCAGCACTTAGCAACCCC
36279159 TCGGGAGAATCAGCACTTAGCAACCCC
1 TCGGGAGAATCAGCACTTAGCAACCCC
36279186 CTTCACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.28, C:0.34, G:0.23, T:0.15
Consensus pattern (27 bp):
TCGGGAGAATCAGCACTTAGCAACCCC
Found at i:36279191 original size:102 final size:101
Alignment explanation
Indices: 36279058--36279258 Score: 303
Period size: 102 Copynumber: 2.0 Consensus size: 101
36279048 CACCAATGAG
* * * * *
36279058 TCGGGGAATCAACACTTAGCGACCCCTTTCACATTTAAGATACGGCGGGATCAACACTTAGCAAC
1 TCGGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACAGCGGAATCAACACTGAGCAAC
*
36279123 CACCAATGATTCGGGGAATCAGCACTTAGCAACCCC
66 CACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
* * *
36279159 TCGGGAGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAA
1 TCGGG-GAATCAACACTTAGCAACCCCCTTCACATTTAAGATACAGCGGAATCAACACTGAGCAA
*
36279224 CCACCAATGAGTCGGGGAATTAGCACTTAGCAACC
65 CCACCAATGAGTCGGGGAATCAGCACTTAGCAACC
36279259 TCTTTCACAT
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
101 5 0.06
102 84 0.94
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.19
Consensus pattern (101 bp):
TCGGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACAGCGGAATCAACACTGAGCAAC
CACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
Found at i:36279266 original size:75 final size:75
Alignment explanation
Indices: 36279159--36279338 Score: 270
Period size: 75 Copynumber: 2.4 Consensus size: 75
36279149 TAGCAACCCC
36279159 TCGGGAGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAA
1 TCGGG-GAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAA
*
36279224 CCACCAATGAG
65 CCACCAATGAA
* * * * * *
36279235 TCGGGGAATTAGCACTTAGCAACCTCTTTCACATTTAAGGTACGGTGGAATCAGCACTTAGCAAC
1 TCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAAC
*
36279300 GACCAATGAA
66 CACCAATGAA
*
36279310 TCGGCGAATCAGCACTTAGCAACCCCCTT
1 TCGGGGAATCAGCACTTAGCAACCCCCTT
36279339 TATATTCAAT
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 87 0.95
76 5 0.05
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (75 bp):
TCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAAC
CACCAATGAA
Found at i:36279592 original size:30 final size:30
Alignment explanation
Indices: 36279556--36279613 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36279546 CCACCCAACT
36279556 TTTTGAAAAATTACAATTTTGCCCCTAAAC
1 TTTTGAAAAATTACAATTTTGCCCCTAAAC
* * * *
36279586 TTTTGAATATTTACACTTTTGTCCCTAA
1 TTTTGAAAAATTACAATTTTGCCCCTAA
36279614 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:36286498 original size:102 final size:102
Alignment explanation
Indices: 36286376--36286577 Score: 377
Period size: 102 Copynumber: 2.0 Consensus size: 102
36286366 CCAATGAGTC
* *
36286376 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
*
36286441 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTCG
36286478 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
36286543 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCT
66 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCT
36286578 TTCACATTTT
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTCG
Found at i:36286539 original size:42 final size:42
Alignment explanation
Indices: 36286480--36286616 Score: 175
Period size: 42 Copynumber: 3.5 Consensus size: 42
36286470 ACCCCTCGGG
36286480 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
* *
36286522 GGAATCAGCACTTAGCAA-CCAC--CA-A--TGAG-T-CGG-
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
* *
36286555 GGAATCAGCACTTAGCAACCCCTTTCACATTTTAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
36286597 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
36286617 ACCAATAAAT
Statistics
Matches: 81, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
33 18 0.22
34 5 0.06
35 1 0.01
36 5 0.06
37 1 0.01
38 1 0.01
39 5 0.06
40 1 0.01
41 6 0.07
42 38 0.47
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
Found at i:36286645 original size:177 final size:177
Alignment explanation
Indices: 36286341--36286681 Score: 610
Period size: 177 Copynumber: 1.9 Consensus size: 177
36286331 TATCCGTTAT
*
36286341 CGGTGGATTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
* * * **
36286406 ATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAA
66 ATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATAAATCGGGGAATCAAAACTTAGCAA
36286471 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
131 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
36286518 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
*
36286583 ATTTTAGATACGGTGGAATCAGCACTTAGCAACCACCAATAAATCGGGGAATCAAAACTTAGCAA
66 ATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATAAATCGGGGAATCAAAACTTAGCAA
*
36286648 CCCCTTGGGGGAATCAGCACTTAGCAACCCCCTT
131 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTT
36286682 TATATTCAAT
Statistics
Matches: 156, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 156 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (177 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATAAATCGGGGAATCAAAACTTAGCAA
CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
Found at i:36286652 original size:75 final size:75
Alignment explanation
Indices: 36286478--36286653 Score: 298
Period size: 75 Copynumber: 2.3 Consensus size: 75
36286468 CAACCCCTCG
*
36286478 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
* *
36286543 CCAATGAGTC
66 CCAATAAATC
*
36286553 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTTAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
36286618 CCAATAAATC
66 CCAATAAATC
**
36286628 GGGGAATCAAAACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
36286654 GGGGGAATCA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 95 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (75 bp):
GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATAAATC
Found at i:36316355 original size:29 final size:29
Alignment explanation
Indices: 36316322--36316379 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
36316312 TTTCTAGCTT
36316322 ATTTTATACTTAG-GTTATTTTCATTTGTA
1 ATTTTATACTT-GCGTTATTTTCATTTGTA
* *
36316351 ATTTTATTCTTGCTTTTATTTTCATTTGT
1 ATTTTATACTTGC-GTTATTTTCATTTGT
36316380 CATGGAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 10 0.40
30 14 0.56
ACGTcount: A:0.19, C:0.09, G:0.09, T:0.64
Consensus pattern (29 bp):
ATTTTATACTTGCGTTATTTTCATTTGTA
Found at i:36317018 original size:21 final size:22
Alignment explanation
Indices: 36316994--36317050 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 22
36316984 TCCATTTTTT
36316994 TTCTTTCTTTCTCCTTTCTC-C
1 TTCTTTCTTTCTCCTTTCTCAC
* * * *
36317015 TTCTCTATTTCTTTCTTTCTCAT
1 TTCTTTCTTTC-TCCTTTCTCAC
36317038 TTCTATTCTTTCT
1 TTCT-TTCTTTCT
36317051 TTTATTTTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
21 9 0.33
22 8 0.30
23 5 0.19
24 5 0.19
ACGTcount: A:0.05, C:0.30, G:0.00, T:0.65
Consensus pattern (22 bp):
TTCTTTCTTTCTCCTTTCTCAC
Found at i:36317046 original size:16 final size:16
Alignment explanation
Indices: 36316993--36317050 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
36316983 CTCCATTTTT
*
36316993 TTTCTTTCTTTCTC-C
1 TTTCTTTCTTTCTCTA
*
36317008 TTTC--TCCTTCTCTA
1 TTTCTTTCTTTCTCTA
36317022 TTTCTTTCTTTCTC-A
1 TTTCTTTCTTTCTCTA
36317037 TTTCTATTCTTTCT
1 TTTCT-TTCTTTCT
36317051 TTTATTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
13 7 0.19
14 4 0.11
15 10 0.28
16 15 0.42
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTCTTTCTTTCTCTA
Found at i:36317048 original size:20 final size:22
Alignment explanation
Indices: 36317007--36317052 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
36316997 TTTCTTTCTC
*
36317007 CTTTCTCCTTCTCTATTTCTTT
1 CTTTCTCATTCTCTATTTCTTT
36317029 CTTTCTCATT-TCTA-TTCTTT
1 CTTTCTCATTCTCTATTTCTTT
36317049 CTTT
1 CTTT
36317053 TATTTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.43
21 4 0.17
22 9 0.39
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (22 bp):
CTTTCTCATTCTCTATTTCTTT
Found at i:36317076 original size:8 final size:8
Alignment explanation
Indices: 36317065--36317096 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
36317055 TTTTATAAAT
36317065 ATATAATA
1 ATATAATA
36317073 ATATAATA
1 ATATAATA
*
36317081 TTATAATA
1 ATATAATA
36317089 ATATAATA
1 ATATAATA
36317097 TAACAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAATA
Found at i:36317085 original size:16 final size:16
Alignment explanation
Indices: 36317062--36317097 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
36317052 TTATTTTATA
36317062 AATA-TATAATAATAT
1 AATATTATAATAATAT
36317077 AATATTATAATAATAT
1 AATATTATAATAATAT
36317093 AATAT
1 AATAT
36317098 AACAATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATATTATAATAATAT
Found at i:36317104 original size:16 final size:16
Alignment explanation
Indices: 36317069--36317104 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36317059 ATAAATATAT
* *
36317069 AATAATATAATATTAT
1 AATAATATAATATAAC
36317085 AATAATATAATATAAC
1 AATAATATAATATAAC
36317101 AATA
1 AATA
36317105 TACTTATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATATAATATAAC
Found at i:36320702 original size:29 final size:29
Alignment explanation
Indices: 36320661--36320718 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
36320651 ATATGCTTCC
36320661 TATTTTTACAATTTAAT-ATTTTATTTTT
1 TATTTTTACAATTTAATCATTTTATTTTT
* *
36320689 TATTTTTAAGAATTTAATCTTTTTATTTTT
1 TATTTTT-ACAATTTAATCATTTTATTTTT
36320719 AAAATTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 7 0.27
29 9 0.35
30 10 0.38
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (29 bp):
TATTTTTACAATTTAATCATTTTATTTTT
Found at i:36320727 original size:23 final size:22
Alignment explanation
Indices: 36320672--36320728 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
36320662 ATTTTTACAA
*
36320672 TTTAATATTTT-ATTTTTTATT
1 TTTAAAATTTTAATTTTTTATT
36320693 TTTAAGAA-TTTAATCTTTTTATT
1 TTTAA-AATTTTAAT-TTTTTATT
36320716 TTTAAAATTTTAA
1 TTTAAAATTTTAA
36320729 AACTTAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 8 0.26
22 5 0.16
23 18 0.58
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTAAAATTTTAATTTTTTATT
Found at i:36325130 original size:29 final size:29
Alignment explanation
Indices: 36325086--36325143 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
36325076 TTAAAATTTT
*
36325086 AAAAATAAAAAGATTAAATTCTTAAAAATA
1 AAAAATAAAAAGATTAAATT-GTAAAAATA
*
36325116 AAAAAT-AAAATATTAAATTGTAAAAATA
1 AAAAATAAAAAGATTAAATTGTAAAAATA
36325144 GGAAGCATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 8 0.31
29 12 0.46
30 6 0.23
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (29 bp):
AAAAATAAAAAGATTAAATTGTAAAAATA
Found at i:36327924 original size:19 final size:19
Alignment explanation
Indices: 36327895--36327971 Score: 129
Period size: 19 Copynumber: 4.1 Consensus size: 19
36327885 CCGGACTCAC
36327895 ATATGGATATGCAATCTTAG
1 ATAT-GATATGCAATCTTAG
36327915 ATATGATATGCAATCTTAG
1 ATATGATATGCAATCTTAG
36327934 ATATGATATGCAATCTTAG
1 ATATGATATGCAATCTTAG
*
36327953 ATATGA-ATGTAATCTTAG
1 ATATGATATGCAATCTTAG
36327971 A
1 A
36327972 AGATGTGATT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
18 12 0.21
19 40 0.71
20 4 0.07
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (19 bp):
ATATGATATGCAATCTTAG
Found at i:36334480 original size:44 final size:44
Alignment explanation
Indices: 36334391--36335294 Score: 794
Period size: 44 Copynumber: 20.5 Consensus size: 44
36334381 GCAGATCAAT
* * *
36334391 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * *
36334435 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGGAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36334479 GAAGAAAG-ATGATCTTGTCTTCATTTATTGG-CGTGAAGTAGATC
1 GAAG-ATGCA-GATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* *
36334523 GAAGATAGCATG-TCATGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCA-GATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
** *
36334567 GAAGATGCAGATCTTGTCTTTATGTATTGGT-GTGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * *
36334610 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * *
36334655 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * * * *
36334699 GAACAAAGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAA-GATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36334743 AAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36334787 GAAGATGCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36334831 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36334875 GAAAATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36334919 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * ** * * * *
36334963 GAAGAAAGCAAATCTTAACTTCATGTATT-ATCGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * * *
36335007 AAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAATGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * * * * *
36335051 GAAGATGCAAATATTATCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36335095 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36335139 GAAAATAGCAGGTCTTGTCTTCCTATATTGTTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * *
36335183 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * * *
36335227 GAAGAAAGCAGATCTTGTCTTCATTTATTGG-CGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
* * *
36335271 GAAAATAGCAGGTCTTGCCTTCCT
1 GAAGAT-GCAGATCTTGTCTTCCT
36335295 GCACCGACAG
Statistics
Matches: 678, Mismatches: 154, Indels: 56
0.76 0.17 0.06
Matches are distributed among these distances:
42 2 0.00
43 147 0.22
44 389 0.57
45 140 0.21
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (44 bp):
GAAGATGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATC
Found at i:36334649 original size:132 final size:132
Alignment explanation
Indices: 36334391--36335294 Score: 1210
Period size: 132 Copynumber: 6.8 Consensus size: 132
36334381 GCAGATCAAT
* * * * * * *
36334391 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCT
1 GAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
*** * * * * * * * *
36334454 TCCCATATTGGTGGTGGAGTAGATCGAAGAAAG-ATGATCTTGTCTTCATTTATTGG-CGTGAAG
65 TCATGTATTGG-CGTGAAGTAGATCGAAGATAGCA-GGTCCTGTCTTCCTATATTGGTAG-GAAG
*
36334517 TAGATC
127 TGGATC
* * * * * *
36334523 GAAGATAGCATG-TCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTC
1 GAAGAT-GCA-GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
* * *
36334585 TTTATGTATTGGTGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGT
64 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGT
36334650 GGATC
128 GGATC
* *
36334655 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAACAAAGTAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
36334720 CATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
36334785 TC
131 TC
*
36334787 GAAGATGCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * *
36334852 CATGTATTGGCGTGAAGTAGATCGAAAATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
36334917 TC
131 TC
* * **
36334919 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAAATCTTAACTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
** * *
36334984 CATGTATTATCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAATGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
36335049 TC
131 TC
* * * *
36335051 GAAGATGCAAATATTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * *
36335116 CATGTATTGGCGTGAAGTAGATCGAAAATAGCAGGTCTTGTCTTCCTATATTGTTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
36335181 TC
131 TC
36335183 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * * *
36335248 CATTTATTGGCGTGAAGTAGATCGAAAATAGCAGGTCTTGCCTTCCT
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCT
36335295 GCACCGACAG
Statistics
Matches: 702, Mismatches: 64, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
130 1 0.00
131 57 0.08
132 576 0.82
133 68 0.10
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (132 bp):
GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
TC
Found at i:36335669 original size:44 final size:43
Alignment explanation
Indices: 36335576--36335691 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 43
36335566 ATGGCAAATT
* * *
36335576 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGATAATC
1 TTATCTCCCTGAAGTTGCAAT-GAGCAGATTAAAACCGATAATC
* * *
36335620 CTATCTCCCTGAAGTTGCAATGAAGCAGATTAAAACC-TTGGATC
1 TTATCTCCCTGAAGTTGCAATG-AGCAGATTAAAACCGAT-AATC
* *
36335664 TTATCTCTCTGAAGTTGCATTGAGCAGA
1 TTATCTCCCTGAAGTTGCAATGAGCAGA
36335692 ACGCATCTAG
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
43 8 0.13
44 53 0.87
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAATGAGCAGATTAAAACCGATAATC
Found at i:36336135 original size:19 final size:19
Alignment explanation
Indices: 36336111--36336185 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
36336101 AATCTTCGAG
36336111 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36336130 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36336149 GATATATGCAATCTTAGATTT
1 G--ATATGCAATCTTAGATAT
*
36336170 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
36336186 AGATGTGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36336157 original size:21 final size:21
Alignment explanation
Indices: 36336112--36336174 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
36336102 ATCTTCGAGG
36336112 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
36336131 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
36336152 ATATGCAATCTTAGATTTGAT
1 ATATGCAATCTTAGATATGAT
36336173 AT
1 AT
36336175 GTAATCTTAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 19 0.46
21 22 0.54
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.40
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:36336763 original size:23 final size:23
Alignment explanation
Indices: 36336710--36336781 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
36336700 TTAGCTTTTT
*
36336710 TTTA-TTTTCTTATTTTTAATTA
1 TTTAGTTTTCTTATTTTTTATTA
* *
36336732 ATTAGTTTTTTTATTTTTTATTA
1 TTTAGTTTTCTTATTTTTTATTA
** * *
36336755 TTTCTTTTTCATATTTAATTATTA
1 TTTAGTTTTCTTATTT-TTTATTA
36336779 TTT
1 TTT
36336782 TTTAAAATAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 3 0.08
23 27 0.69
24 9 0.23
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (23 bp):
TTTAGTTTTCTTATTTTTTATTA
Found at i:36336775 original size:21 final size:19
Alignment explanation
Indices: 36336729--36336785 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
36336719 TTATTTTTAA
* *
36336729 TTAATTAGTTTTTTTATTT
1 TTAATTATTTTTTTTATAT
*
36336748 TTTATTATTTCTTTTTCATAT
1 TTAATTATTT-TTTTT-ATAT
36336769 TTAATTATTATTTTTTA
1 TTAATTATT-TTTTTTA
36336786 AAATATATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 8 0.26
20 6 0.19
21 16 0.52
22 1 0.03
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.72
Consensus pattern (19 bp):
TTAATTATTTTTTTTATAT
Found at i:36336857 original size:11 final size:11
Alignment explanation
Indices: 36336841--36336875 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
36336831 TATAATATAA
36336841 TTATTTTTATT
1 TTATTTTTATT
36336852 TTATTTTTATT
1 TTATTTTTATT
*
36336863 TATATTTATATT
1 T-TATTTTTATT
36336875 T
1 T
36336876 ATCTGTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:36336863 original size:17 final size:18
Alignment explanation
Indices: 36336841--36336875 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36336831 TATAATATAA
*
36336841 TTATTTTTATTT-TATTT
1 TTATTTATATTTATATTT
36336858 TTATTTATATTTATATTT
1 TTATTTATATTTATATTT
36336876 ATCTGTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (18 bp):
TTATTTATATTTATATTT
Found at i:36336864 original size:10 final size:10
Alignment explanation
Indices: 36336841--36336893 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
36336831 TATAATATAA
36336841 TTATTTTTATT
1 TTATTTTTA-T
36336852 TTATTTTTAT
1 TTATTTTTAT
36336862 TTATATTTATAT
1 TTAT-TTT-TAT
* * *
36336874 TTATCTGTAA
1 TTATTTTTAT
36336884 TTATTTTTAT
1 TTATTTTTAT
36336894 AATCTATATG
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
10 14 0.41
11 13 0.38
12 7 0.21
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (10 bp):
TTATTTTTAT
Found at i:36336868 original size:12 final size:12
Alignment explanation
Indices: 36336842--36336877 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
36336832 ATAATATAAT
36336842 TATTTTTATTT-
1 TATTTTTATTTA
36336853 TATTTTTATTTA
1 TATTTTTATTTA
*
36336865 TATTTATATTTA
1 TATTTTTATTTA
36336877 T
1 T
36336878 CTGTAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.48
12 12 0.52
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (12 bp):
TATTTTTATTTA
Found at i:36338994 original size:16 final size:16
Alignment explanation
Indices: 36338960--36339021 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 16
36338950 ATAAAACAAA
*
36338960 AGAAAGAATAGAAATG
1 AGAAAGAATAGAAAAG
36338976 AGAAAGAA-AGAAACAG
1 AGAAAGAATAGAAA-AG
* *
36338992 AG-AAG--GAGAAAGG
1 AGAAAGAATAGAAAAG
*
36339005 AGAAAGAAAAGAAAAG
1 AGAAAGAATAGAAAAG
36339021 A
1 A
36339022 AAAAAAAAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
13 3 0.08
14 8 0.22
15 8 0.22
16 18 0.49
ACGTcount: A:0.66, C:0.02, G:0.29, T:0.03
Consensus pattern (16 bp):
AGAAAGAATAGAAAAG
Found at i:36344708 original size:15 final size:15
Alignment explanation
Indices: 36344673--36344711 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
36344663 ATATATATAC
*
36344673 ATGTAGTGAAAAAAA
1 ATGTATTGAAAAAAA
*
36344688 AT-TATTGAAAAAAG
1 ATGTATTGAAAAAAA
36344702 ATGTATTGAA
1 ATGTATTGAA
36344712 TTGTTGACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.18, T:0.28
Consensus pattern (15 bp):
ATGTATTGAAAAAAA
Found at i:36344800 original size:28 final size:28
Alignment explanation
Indices: 36344768--36344839 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
36344758 TAATGGGATT
* *
36344768 AGCACTAAGTGTGCGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGAGATTAATTATAA
* *
36344796 AGCACTAAGTGTGCGAGATTGATTATTA
1 AGCACTAAGTGTGCGAGATTAATTATAA
36344824 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
36344840 ACTTATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTAATTATAA
Found at i:36344845 original size:24 final size:24
Alignment explanation
Indices: 36344768--36344848 Score: 63
Period size: 28 Copynumber: 3.0 Consensus size: 24
36344758 TAATGGGATT
* *
36344768 AGCACTAAGTGTGCGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGA----AATTATTA
36344796 AGCACTAAGTGTGCGAGATTGATTATTA
1 AGCACTAAGTGTGCGA-A---ATTATTA
*
36344824 AGCACTAAGTGTGCGAACTTATTA
1 AGCACTAAGTGTGCGAAATTATTA
36344848 A
1 A
36344849 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
24 7 0.15
25 1 0.02
27 1 0.02
28 37 0.80
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (24 bp):
AGCACTAAGTGTGCGAAATTATTA
Found at i:36345635 original size:70 final size:70
Alignment explanation
Indices: 36345584--36345959 Score: 522
Period size: 70 Copynumber: 5.3 Consensus size: 70
36345574 TCGTTGTATT
*
36345584 TATGCTGCCTAAATTGTTGTATATATGCTATCCAATTTTGATGTAAAAATGTTGCTCAATTTGGT
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGTTGCTCAATTTGGT
36345649 ATATA
66 ATATA
*
36345654 TATGCTGCCTAAATTGTTGTACATATGCTGTCCAATTTTGATGTAAAAATGTTGCTCAATTTGGT
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGTTGCTCAATTTGGT
36345719 ATATA
66 ATATA
* *
36345724 TATGCTGCCTAAATTGTTGTATAAATGCTGTCCAATTTTGATGTAAAATTGTTGCTCAATTTGGT
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGTTGCTCAATTTGGT
36345789 ATATA
66 ATATA
* * * * *
36345794 TATGCTGCCCAATTTGTTGTATATATGCTGTCCAATTTTTGGTGTAAAAATGCTGCTCGATTTTG
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCCAA-TTTTGATGTAAAAATGTTGCTC-AATTTG
* *
36345859 TTGTATA
64 GTATATA
* * * * * *
36345866 TATGCTGCCCAAATTGTTGTATATATGTTGTCCAAATTTTGGTGTGAAAATGCTG-TCTAGTTTG
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCC-AATTTTGATGTAAAAATGTTGCTC-AATTTG
36345930 GTATATA
64 GTATATA
* *
36345937 AATGCTGTCC-AAATTGATGTATA
1 TATGCTG-CCTAAATTGTTGTATA
36345960 AGGGCTGTCC
Statistics
Matches: 279, Mismatches: 23, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
70 167 0.60
71 49 0.18
72 61 0.22
73 2 0.01
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (70 bp):
TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGTTGCTCAATTTGGT
ATATA
Found at i:36345800 original size:47 final size:47
Alignment explanation
Indices: 36345603--36345957 Score: 141
Period size: 47 Copynumber: 7.5 Consensus size: 47
36345593 TAAATTGTTG
* *
36345603 TATATATGCTATCCAATTTTGATGTAAAA-ATGTTGCTCAATTTGGTA
1 TATATATGCT-GCCAATTTTGATGTAAAATATGCTGCTCAATTTGGTA
* * * * *
36345650 TATATATGCTGCCTAA-ATTGTTGT-ACATATGCTG-TCCAATTTTGATG
1 TATATATGCTGCC-AATTTTGATGTAAAATATGCTGCT-CAA-TTTGGTA
* * * * * *
36345697 TAAAAATGTTGCTCAA-TTTG--GTATATATATGCTGCCTAAATTGTTGTA
1 TATATATGCTGC-CAATTTTGATGTA-AAATATGCTG-CTCAATT-TGGTA
*
36345745 TA-A-ATGCTGTCCAATTTTGATGTAAAAT-TGTTGCTCAATTTGGTA
1 TATATATGCTG-CCAATTTTGATGTAAAATATGCTGCTCAATTTGGTA
* * *
36345790 TATATATGCTGCCCAA-TTTGTTGT-ATATATGCTG-TCCAATTTTTGGTG
1 TATATATGCTG-CCAATTTTGATGTAAAATATGCTGCT-CAA--TTTGGTA
* * * * * * * * *
36345838 TAAAAATGCTGCTCGATTTTGTTGT-ATATATGCTGCCCAAATTGTTG
1 TATATATGCTGC-CAATTTTGATGTAAAATATGCTGCTCAATTTGGTA
* * * *
36345885 TATATATGTTGTCCAAATTTTGGTGTGAAA-ATGCTG-TCTAGTTTGGTA
1 TATATATGCTG-CC-AATTTTGATGTAAAATATGCTGCTC-AATTTGGTA
* *
36345933 TATAAATGCTGTCCAA-ATTGATGTA
1 TATATATGCTG-CCAATTTTGATGTA
36345958 TAAGGGCTGT
Statistics
Matches: 233, Mismatches: 48, Indels: 55
0.69 0.14 0.16
Matches are distributed among these distances:
45 15 0.06
46 51 0.22
47 80 0.34
48 60 0.26
49 27 0.12
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (47 bp):
TATATATGCTGCCAATTTTGATGTAAAATATGCTGCTCAATTTGGTA
Found at i:36345903 original size:23 final size:22
Alignment explanation
Indices: 36345569--36345892 Score: 191
Period size: 23 Copynumber: 13.9 Consensus size: 22
36345559 TAAATGTTCC
* *
36345569 CCAATTCGTTGTATTTATGCTG
1 CCAATTTGTTGTATATATGCTG
* *
36345591 CCTAAATTGTTGTATATATGCTAT
1 CC-AATTTGTTGTATATATGCT-G
* * * *
36345615 CCAATTTTGATGTAAAAATGTTG
1 CCAA-TTTGTTGTATATATGCTG
* *
36345638 CTCAATTTGGTATATATATGCTG
1 C-CAATTTGTTGTATATATGCTG
* *
36345661 CCTAAATTGTTGTACATATGCTG
1 CC-AATTTGTTGTATATATGCTG
* * * *
36345684 TCCAATTTTGATGTAAAAATGTTG
1 -CCAA-TTTGTTGTATATATGCTG
* *
36345708 CTCAATTTGGTATATATATGCTG
1 C-CAATTTGTTGTATATATGCTG
* *
36345731 CCTAAATTGTTGTATAAATGCTG
1 CC-AATTTGTTGTATATATGCTG
* * *
36345754 TCCAATTTTGATGTA-AAATTGTTG
1 -CCAA-TTTGTTGTATATA-TGCTG
* *
36345778 CTCAATTTGGTATATATATGCTG
1 C-CAATTTGTTGTATATATGCTG
36345801 CCCAATTTGTTGTATATATGCTG
1 -CCAATTTGTTGTATATATGCTG
* * *
36345824 TCCAATTTTTGGTGTAAAAATGCTG
1 -CCAA--TTTGTTGTATATATGCTG
*
36345849 CTCGATTTTGTTGTATATATGCTG
1 C-C-AATTTGTTGTATATATGCTG
*
36345873 CCCAAATTGTTGTATATATG
1 -CCAATTTGTTGTATATATG
36345893 TTGTCCAAAT
Statistics
Matches: 230, Mismatches: 52, Indels: 39
0.72 0.16 0.12
Matches are distributed among these distances:
22 4 0.02
23 137 0.60
24 71 0.31
25 17 0.07
26 1 0.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (22 bp):
CCAATTTGTTGTATATATGCTG
Found at i:36345959 original size:23 final size:23
Alignment explanation
Indices: 36345601--36345971 Score: 180
Period size: 23 Copynumber: 15.8 Consensus size: 23
36345591 CCTAAATTGT
* * *
36345601 TGTATATATGCTATCCAATTTTGA
1 TGTATAAATGCTGTCCAA-TTTGG
* *
36345625 TGTAAAAATGTTG-CTCAATTTGG
1 TGTATAAATGCTGTC-CAATTTGG
* * * *
36345648 TATATATATGCTG-CCTAAATTGT
1 TGTATAAATGCTGTCC-AATTTGG
* * *
36345671 TGTACATATGCTGTCCAATTTTGA
1 TGTATAAATGCTGTCCAA-TTTGG
* *
36345695 TGTAAAAATGTTG-CTCAATTTGG
1 TGTATAAATGCTGTC-CAATTTGG
* * * *
36345718 TATATATATGCTG-CCTAAATTGT
1 TGTATAAATGCTGTCC-AATTTGG
*
36345741 TGTATAAATGCTGTCCAATTTTGA
1 TGTATAAATGCTGTCCAA-TTTGG
*
36345765 TGTA-AAATTGTTG-CTCAATTTGG
1 TGTATAAA-TGCTGTC-CAATTTGG
* * * *
36345788 TATATATATGCTGCCCAATTTGT
1 TGTATAAATGCTGTCCAATTTGG
*
36345811 TGTATATATGCTGTCCAATTTTTGG
1 TGTATAAATGCTGTCCAA--TTTGG
* * * *
36345836 TGTAAAAATGCTGCTCGATTTTGT
1 TGTATAAATGCTG-TCCAATTTGG
* * * *
36345860 TGTATATATGCTGCCCAAATTGT
1 TGTATAAATGCTGTCCAATTTGG
* *
36345883 TGTATATATGTTGTCCAAATTTTGG
1 TGTATAAATGCTGTCC-AA-TTTGG
* *
36345908 TGTGA-AAATGCTGTCTAGTTTGG
1 TGT-ATAAATGCTGTCCAATTTGG
* * *
36345931 TATATAAATGCTGTCCAAATTGA
1 TGTATAAATGCTGTCCAATTTGG
**
36345954 TGTATAAGGGCTGTCCAA
1 TGTATAAATGCTGTCCAA
36345972 ACAGGGTAGA
Statistics
Matches: 263, Mismatches: 65, Indels: 39
0.72 0.18 0.11
Matches are distributed among these distances:
22 3 0.01
23 160 0.61
24 67 0.25
25 29 0.11
26 4 0.02
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (23 bp):
TGTATAAATGCTGTCCAATTTGG
Found at i:36346477 original size:27 final size:26
Alignment explanation
Indices: 36346447--36346760 Score: 349
Period size: 27 Copynumber: 11.5 Consensus size: 26
36346437 AGACCCTAAA
36346447 ATAGGGTAAAATGATCGAAATACCCC
1 ATAGGGTAAAATGATCGAAATACCCC
* * *
36346473 GATAGGGTAAAAAGACCAAAATACCCTC
1 -ATAGGGTAAAATGATCGAAATACCC-C
* *
36346501 ATAGGGTAAAATGACCAAAATACCCCC
1 ATAGGGTAAAATGATCGAAATA-CCCC
* *
36346528 ATAAGGTAAAATGATCGCAATACCCC
1 ATAGGGTAAAATGATCGAAATACCCC
* * *
36346554 TAATAGAGTAAAATGACCAAAATACCCC
1 --ATAGGGTAAAATGATCGAAATACCCC
*
36346582 TATAGGGTAAAATGATTGAAATACCCCC
1 -ATAGGGTAAAATGATCGAAATA-CCCC
* *
36346610 AATAGGGTAAAATGACCGAAATACTCTC
1 -ATAGGGTAAAATGATCGAAATAC-CCC
36346638 ATAGGGTAAAATGATCGAAATACTCCC
1 ATAGGGTAAAATGATCGAAATAC-CCC
*
36346665 ATAGGATAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGATCGAAATA-CCCC
* *
36346692 ATAGGGTAAAATGACCAAAATACCCCC
1 ATAGGGTAAAATGATCGAAATA-CCCC
*
36346719 ATTAGGATAAAATGATCGAAATACCCTC
1 A-TAGGGTAAAATGATCGAAATACCC-C
36346747 ATAGGGTAAAATGA
1 ATAGGGTAAAATGA
36346761 CTGTTATACC
Statistics
Matches: 246, Mismatches: 32, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.02
27 170 0.69
28 72 0.29
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (26 bp):
ATAGGGTAAAATGATCGAAATACCCC
Found at i:36346580 original size:55 final size:55
Alignment explanation
Indices: 36346446--36346760 Score: 391
Period size: 55 Copynumber: 5.8 Consensus size: 55
36346436 GAGACCCTAA
* * * * * *
36346446 AATAGGGTAAAATGATCGAAATACCCCGATAGGGTAAAAAGACCAAAATACCCTC
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC
* * * *
36346501 -ATAGGGTAAAATGACCAAAATACCCCCATAAGGTAAAATGATCGCAATACCCCT
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC
* * * *
36346555 AATAGAGTAAAATGACCAAAATACCCCTATAGGGTAAAATGATTGAAATACCCCC
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC
* * *
36346610 AATAGGGTAAAATGACCGAAATACTCTCATAGGGTAAAATGATCGAAATACTCCC
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC
* * * *
36346665 -ATAGGATAAAATGATCGAAATACCCCCATAGGGTAAAATGACCAAAATACCCCC
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC
* * * *
36346719 ATTAGGATAAAATGATCGAAATACCCTCATAGGGTAAAATGA
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
36346761 CTGTTATACC
Statistics
Matches: 226, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
54 91 0.40
55 135 0.60
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (55 bp):
AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC
Found at i:36346587 original size:82 final size:82
Alignment explanation
Indices: 36346447--36346761 Score: 377
Period size: 82 Copynumber: 3.9 Consensus size: 82
36346437 AGACCCTAAA
* * *
36346447 ATAGGGTAAAATGATCGAAATACCCC-GATAGGGTAAAAAGACCAAAATACCCTCATAGGGTAAA
1 ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAA
*
36346511 ATGACCAAAATACCCCC
66 ATGACCGAAATACCCCC
* * * *
36346528 ATAAGGTAAAATGATCGCAATACCCCTAATAGAGTAAAATGACCAAAATACCC-CTATAGGGTAA
1 ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTC-ATAGGGTAA
**
36346592 AATGATTGAAATACCCCC
65 AATGACCGAAATACCCCC
* * * * *
36346610 AATAGGGTAAAATGACCGAAATA-CTCTCATAGGGTAAAATGATCGAAATACTCC-CATAGGATA
1 -ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATAC-CCTCATAGGGTA
*
36346673 AAATGATCGAAATACCCCC
64 AAATGACCGAAATACCCCC
* * * * * *
36346692 ATAGGGTAAAATGACCAAAATACCCCCATTAGGATAAAATGATCGAAATACCCTCATAGGGTAAA
1 ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAA
36346757 ATGAC
66 ATGAC
36346762 TGTTATACCC
Statistics
Matches: 202, Mismatches: 26, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
81 48 0.24
82 132 0.65
83 22 0.11
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (82 bp):
ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAA
ATGACCGAAATACCCCC
Found at i:36350766 original size:21 final size:22
Alignment explanation
Indices: 36350722--36350773 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
36350712 TACTTGATTA
* *
36350722 TTAACTAAGTAACTAATTACCC
1 TTAATTAAGTAACTAATCACCC
*
36350744 TTAATTAAGT-ACTTATCACCC
1 TTAATTAAGTAACTAATCACCC
*
36350765 TTAGTTAAG
1 TTAATTAAG
36350774 AATACCATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.37
Consensus pattern (22 bp):
TTAATTAAGTAACTAATCACCC
Found at i:36363981 original size:79 final size:82
Alignment explanation
Indices: 36363870--36364054 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
36363860 GCTACTCGTT
* * *
36363870 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
36363933 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
36363950 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
36364013 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
36364030 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36364055 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:36364054 original size:40 final size:40
Alignment explanation
Indices: 36363851--36364054 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
36363841 CGGAATTTAA
** *
36363851 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36363891 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36363931 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36363970 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36364010 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36364050 CCGGA
1 CCGGA
36364055 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36374452 original size:79 final size:81
Alignment explanation
Indices: 36374328--36374511 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36374318 GCTACTCGTT
* *
36374328 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
36374391 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
36374407 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
36374470 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
36374487 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36374512 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:36374511 original size:40 final size:40
Alignment explanation
Indices: 36374309--36374511 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
36374299 CGGAATTTAA
** *
36374309 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36374349 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36374388 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36374427 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36374467 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36374507 CCGGA
1 CCGGA
36374512 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36376941 original size:8 final size:9
Alignment explanation
Indices: 36376923--36376968 Score: 78
Period size: 9 Copynumber: 5.3 Consensus size: 9
36376913 ATCAAATTGC
36376923 AAAGTTTTG
1 AAAGTTTTG
36376932 AAAG-TTTG
1 AAAGTTTTG
36376940 AAAGTTTT-
1 AAAGTTTTG
36376948 AAAGTTTTG
1 AAAGTTTTG
36376957 AAAGTTTTG
1 AAAGTTTTG
36376966 AAA
1 AAA
36376969 CAGTGAGTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
8 16 0.46
9 19 0.54
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (9 bp):
AAAGTTTTG
Found at i:36376945 original size:17 final size:18
Alignment explanation
Indices: 36376923--36376968 Score: 78
Period size: 17 Copynumber: 2.7 Consensus size: 18
36376913 ATCAAATTGC
36376923 AAAGTTTTGAAAG-TTTG
1 AAAGTTTTGAAAGTTTTG
36376940 AAAGTTTT-AAAGTTTTG
1 AAAGTTTTGAAAGTTTTG
36376957 AAAGTTTTGAAA
1 AAAGTTTTGAAA
36376969 CAGTGAGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 20 0.74
18 3 0.11
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (18 bp):
AAAGTTTTGAAAGTTTTG
Found at i:36386434 original size:20 final size:21
Alignment explanation
Indices: 36386405--36386464 Score: 67
Period size: 17 Copynumber: 3.1 Consensus size: 21
36386395 GCCAAAACAG
36386405 AGTACAAAAATTGGCGACATA
1 AGTACAAAAATTGGCGACATA
* *
36386426 AGT-CAAAAA-T--AGACA-C
1 AGTACAAAAATTGGCGACATA
36386442 AGTACAAAAATTGGCGACATA
1 AGTACAAAAATTGGCGACATA
36386463 AG
1 AG
36386465 ACCACACGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 3 0.10
17 10 0.33
18 1 0.03
19 1 0.03
20 10 0.33
21 5 0.17
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (21 bp):
AGTACAAAAATTGGCGACATA
Found at i:36387848 original size:20 final size:20
Alignment explanation
Indices: 36387823--36387930 Score: 101
Period size: 20 Copynumber: 5.4 Consensus size: 20
36387813 GAATCCAAAC
*
36387823 CAGGGGCACAAATGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
36387843 CAGGGGCACAAAAGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
** *
36387863 CACAGGCAGAAAAGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
** **
36387883 CAGGGGCATC-GGAGTGTGAT
1 CAGGGGCA-CAAAAGTGCAAT
* *
36387903 CAAGGGCACCAAAGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
*
36387923 CAGCGGCA
1 CAGGGGCA
36387931 TGAAAGTGTA
Statistics
Matches: 68, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
19 1 0.01
20 67 0.99
ACGTcount: A:0.35, C:0.21, G:0.31, T:0.12
Consensus pattern (20 bp):
CAGGGGCACAAAAGTGCAAT
Found at i:36387911 original size:60 final size:59
Alignment explanation
Indices: 36387841--36387958 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 59
36387831 CAAATGTGCA
* *
36387841 ATCAGGGGCACAAAAGTGCAATCA-CAGGCA-GAAAAGTGCAATCAGGGGCATCGGAGTGTG
1 ATCAAGGGCACAAAAGTGCAATCAGC-GGCATG-AAAGTGCAATC-GAGGCATCGGAGTGTG
* *
36387901 ATCAAGGGCACCAAAGTGCAATCAGCGGCATGAAAGTGTAATCGAGGCATCGGAGTGT
1 ATCAAGGGCACAAAAGTGCAATCAGCGGCATGAAAGTGCAATCGAGGCATCGGAGTGT
36387959 AATTAGGTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
59 14 0.27
60 36 0.69
61 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.32, T:0.15
Consensus pattern (59 bp):
ATCAAGGGCACAAAAGTGCAATCAGCGGCATGAAAGTGCAATCGAGGCATCGGAGTGTG
Found at i:36387936 original size:20 final size:20
Alignment explanation
Indices: 36387827--36387943 Score: 73
Period size: 20 Copynumber: 5.8 Consensus size: 20
36387817 CCAAACCAGG
*
36387827 GGCAC-AAATGTGCAATCAGG
1 GGCACGAAA-GTGCAATCAGC
*
36387847 GGCACAAAAGTGCAATCA-C
1 GGCACGAAAGTGCAATCAGC
*
36387866 AGGCA-GAAAAGTGCAATCAGG
1 -GGCACG-AAAGTGCAATCAGC
* **
36387887 GGCATCG-GAGTGTGATCAAG-
1 GGCA-CGAAAGTGCAATC-AGC
*
36387907 GGCACCAAAGTGCAATCAGC
1 GGCACGAAAGTGCAATCAGC
* *
36387927 GGCATGAAAGTGTAATC
1 GGCACGAAAGTGCAATC
36387944 GAGGCATCGG
Statistics
Matches: 75, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.04
20 66 0.88
21 5 0.07
22 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.30, T:0.15
Consensus pattern (20 bp):
GGCACGAAAGTGCAATCAGC
Found at i:36389511 original size:18 final size:19
Alignment explanation
Indices: 36389484--36389519 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
36389474 AAAGAAAATA
36389484 GAAAATTTTGGGAAACCAT
1 GAAAATTTTGGGAAACCAT
36389503 GAAAA-TTTGGGAAACCA
1 GAAAATTTTGGGAAACCA
36389520 GGGTCACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (19 bp):
GAAAATTTTGGGAAACCAT
Found at i:36390620 original size:24 final size:24
Alignment explanation
Indices: 36390572--36390618 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
36390562 ACTGGTCATA
*
36390572 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
36390596 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
36390619 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:36392022 original size:81 final size:81
Alignment explanation
Indices: 36391734--36392011 Score: 384
Period size: 81 Copynumber: 3.5 Consensus size: 81
36391724 CCCAAAATAA
* * *
36391734 GGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACCAAAATACCCTCATAGGGTAAAATGAT
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAAGGTAAAATGAT
*
36391798 CGAAATACCCCTAATAG
66 CGAAATA-CCCTCATAG
* * *
36391815 GGT--AATGACCAAAATACGCCCATAGGGTAAAATGATCGAAGTACCCTCAT-AGGTTAAAATGA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAAGG-TAAAATGA
*
36391877 TCGAAATACCCCCATAG
65 TCGAAATACCCTCATAG
* * * *
36391894 GGTAAAATGATCGAAATACCCCCATAGGATAAAATGATCGAAATACCCTAATAAGGTAAAATGAC
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAAGGTAAAATGAT
*
36391959 CAAAATACCCTCATAG
66 CGAAATACCCTCATAG
*
36391975 GGTAAAATGACTGAAATACCCCCATAGGGTAAAATGA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
36392012 CTATTATACC
Statistics
Matches: 172, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
79 40 0.23
80 29 0.17
81 100 0.58
82 3 0.02
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (81 bp):
GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAAGGTAAAATGAT
CGAAATACCCTCATAG
Found at i:36392023 original size:27 final size:27
Alignment explanation
Indices: 36391734--36392011 Score: 348
Period size: 27 Copynumber: 10.4 Consensus size: 27
36391724 CCCAAAATAA
*
36391734 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGATCGAAATACCCCCATAG
* * *
36391761 GGTAAAAT-ACCAAAATACCCTCATAG
1 GGTAAAATGATCGAAATACCCCCATAG
*
36391787 GGTAAAATGATCGAAATACCCCTAATAG
1 GGTAAAATGATCGAAATACCCC-CATAG
* * *
36391815 GGT--AATGACCAAAATACGCCCATAG
1 GGTAAAATGATCGAAATACCCCCATAG
* *
36391840 GGTAAAATGATCGAAGTACCCTCATAG
1 GGTAAAATGATCGAAATACCCCCATAG
*
36391867 GTTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGATCGAAATACCCCCATAG
36391894 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGATCGAAATACCCCCATAG
* ** *
36391921 GATAAAATGATCGAAATACCCTAATAA
1 GGTAAAATGATCGAAATACCCCCATAG
* * *
36391948 GGTAAAATGACCAAAATACCCTCATAG
1 GGTAAAATGATCGAAATACCCCCATAG
36391975 GGTAAAATGA-CTGAAATACCCCCATAG
1 GGTAAAATGATC-GAAATACCCCCATAG
36392002 GGTAAAATGA
1 GGTAAAATGA
36392012 CTATTATACC
Statistics
Matches: 216, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.03
26 39 0.18
27 163 0.75
28 7 0.03
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (27 bp):
GGTAAAATGATCGAAATACCCCCATAG
Found at i:36394207 original size:39 final size:39
Alignment explanation
Indices: 36394137--36394258 Score: 217
Period size: 39 Copynumber: 3.1 Consensus size: 39
36394127 AATCTAACGA
36394137 GTAAGTTCGTAAATATTATTATTTAATATTTATGAGTCAAAT
1 GTAAGTTCGT-AA-A-TATTATTTAATATTTATGAGTCAAAT
36394179 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
1 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
36394218 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
1 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
36394257 GT
1 GT
36394259 GATTTTAAAA
Statistics
Matches: 80, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
39 67 0.84
40 1 0.01
41 2 0.03
42 10 0.12
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (39 bp):
GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
Found at i:36398352 original size:44 final size:44
Alignment explanation
Indices: 36398289--36398380 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
36398279 ACTACTGCTT
* * **
36398289 AGGGTGACAGGATCTACAATCTTT-CTCCTATTCCATTGTTGTTC
1 AGGGTGACAAGATCTACAAT-TTTCCACCTATTCCACCGTTGTTC
36398333 AGGGTGACAAGATCTACAATTTTCCACCTATTCCACCGTTGTTC
1 AGGGTGACAAGATCTACAATTTTCCACCTATTCCACCGTTGTTC
36398377 AGGG
1 AGGG
36398381 AGCTAGGACA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 3 0.07
44 40 0.93
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (44 bp):
AGGGTGACAAGATCTACAATTTTCCACCTATTCCACCGTTGTTC
Found at i:36398402 original size:44 final size:44
Alignment explanation
Indices: 36398303--36398778 Score: 565
Period size: 44 Copynumber: 11.0 Consensus size: 44
36398293 TGACAGGATC
* * * * * *
36398303 TACAATCTTTCTCCTATTCCATTGTTGTTCAGGGTGAC-AAGATC-
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAG-CTAGGA-CA
* * *
36398347 TACAATTTTCCACCTATTCCACCGTTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * ** *
36398391 TGCAATCTTCCACCTATTTCACTGCAATTCTGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
36398435 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
36398479 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
36398523 TGCAATCTTCCACCTATTCGACTGCTGTTTAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
36398567 TACAATCTTCTACCTATTCCA---CTGTT---GGAGATAGGACT
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * * *
36398605 TATAGTTTTCCA-CTATTCCACTGCTGTTCAGGGAGTTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
*
36398648 TACAATCTTCCACCTATTCCACTACTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * * *
36398692 TGCAATCTTCCACCTATTCCACTGCTATTTAGGGAGCTAGGGCA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *** *
36398736 TACAATCTTTCACCTATTCCACAATTGTTCAGGGAGATAGGAC
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGAC
36398779 TTATAGTTTC
Statistics
Matches: 370, Mismatches: 53, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
37 8 0.02
38 18 0.05
40 5 0.01
41 5 0.01
43 21 0.06
44 313 0.85
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (44 bp):
TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
Found at i:36412227 original size:20 final size:20
Alignment explanation
Indices: 36412194--36412237 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
36412184 TAAAGAAAGT
* *
36412194 AAATGCAATGGAAAGTAATG
1 AAATGCAATGGAAAATAAGG
36412214 AAATGCAAAT-GAAAATAAGG
1 AAATGC-AATGGAAAATAAGG
36412234 AAAT
1 AAAT
36412238 CTAAAAGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.20, T:0.18
Consensus pattern (20 bp):
AAATGCAATGGAAAATAAGG
Found at i:36416194 original size:20 final size:20
Alignment explanation
Indices: 36416169--36416209 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36416159 TATTCTCTGA
36416169 AAAGTTTCAATTATGTAATG
1 AAAGTTTCAATTATGTAATG
36416189 AAAGTTTCAATTATGTAATG
1 AAAGTTTCAATTATGTAATG
36416209 A
1 A
36416210 TGTAAAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (20 bp):
AAAGTTTCAATTATGTAATG
Found at i:36422587 original size:28 final size:28
Alignment explanation
Indices: 36422553--36422611 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
36422543 CAGTAAAGTG
*
36422553 TGGGCCTTAGCCCAATACAGAAACAGTA
1 TGGGCCTAAGCCCAATACAGAAACAGTA
** * *
36422581 TGGGCCTAAGCCTGATACAGTATCAGTA
1 TGGGCCTAAGCCCAATACAGAAACAGTA
36422609 TGG
1 TGG
36422612 TGCAAGTATG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (28 bp):
TGGGCCTAAGCCCAATACAGAAACAGTA
Found at i:36422886 original size:32 final size:32
Alignment explanation
Indices: 36422818--36423084 Score: 236
Period size: 32 Copynumber: 8.4 Consensus size: 32
36422808 GAATGGCTAC
* * * *
36422818 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
*
36422849 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
36422881 CAGCCATCAGTAGCAGTGATATGATCGACACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * * *
36422913 CAGCCATCAGTAACGGTAACATGATTGGTACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
36422945 AAGCCATCAGTAGCAGTGATATGACCGGTACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* *
36422977 CAA-CCATCAGTAACAGTGAAATGATTGGCACA
1 -AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * *
36423009 CAGACATC-GATAACGGTAATATGATTGGCACA
1 AAGCCATCAG-TAACAGTGATATGATCGGCACA
* * *
36423041 AAGCCATCAGTAACGGT-ACTATGACCGACACA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACA
36423073 AAGCCATCAGTA
1 AAGCCATCAGTA
36423085 GCATCGTAGC
Statistics
Matches: 194, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
31 13 0.07
32 178 0.92
33 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTGATATGATCGGCACA
Found at i:36423009 original size:96 final size:96
Alignment explanation
Indices: 36422838--36423084 Score: 329
Period size: 96 Copynumber: 2.6 Consensus size: 96
36422828 TACAGTAATG
* * * *
36422838 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAGCAGTGATAT
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAACCATCAGTAACAGTGAAAT
*
36422903 GATCGACACACAGCCATC-AGTAACGGTAACA
66 GATCGACACACAGACATCGA-TAACGGTAACA
* *
36422934 TGATTGGTACAAAGCCATCAGTAGCAGTGATATGACCGGTACACAACCATCAGTAACAGTGAAAT
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAACCATCAGTAACAGTGAAAT
* * *
36422999 GATTGGCACACAGACATCGATAACGGTAATA
66 GATCGACACACAGACATCGATAACGGTAACA
* * *
36423030 TGATTGGCACAAAGCCATCAGTAACGGT-ACTATGACCGACACA-AAGCCATCAGTA
1 TGATTGGCACAAAGCCATCAGTAGCAGTGA-TATGACCGGCACACAA-CCATCAGTA
36423085 GCATCGTAGC
Statistics
Matches: 133, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
95 3 0.02
96 129 0.97
97 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (96 bp):
TGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAACCATCAGTAACAGTGAAAT
GATCGACACACAGACATCGATAACGGTAACA
Found at i:36423158 original size:27 final size:27
Alignment explanation
Indices: 36423128--36423191 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
36423118 AGCAAAGCTG
*
36423128 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
36423155 CCAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
36423182 CCAGT-ACAGT
1 CCAGTAACAGT
36423192 ACTTCCTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 7 0.21
27 25 0.74
28 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:36423283 original size:24 final size:23
Alignment explanation
Indices: 36423256--36423314 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 23
36423246 TCATGCTCAG
36423256 AATCAGTCATTCAAATCACAGACA
1 AATCAGTCATTCAAA-CACAGACA
*
36423280 AATCAGTCATACCAAACACAGACA
1 AATCAGTCAT-TCAAACACAGACA
*
36423304 AATCAATCATT
1 AATCAGTCATT
36423315 TAAGTCATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.47, C:0.25, G:0.07, T:0.20
Consensus pattern (23 bp):
AATCAGTCATTCAAACACAGACA
Found at i:36423323 original size:33 final size:33
Alignment explanation
Indices: 36423284--36423349 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
36423274 CAGACAAATC
36423284 AGTCATACCAAACACAGACAAATCAATCATTTA
1 AGTCATACCAAACACAGACAAATCAATCATTTA
36423317 AGTCATACCAAACACAGACAAATCAATCATTTA
1 AGTCATACCAAACACAGACAAATCAATCATTTA
36423350 GCTATAGACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.21
Consensus pattern (33 bp):
AGTCATACCAAACACAGACAAATCAATCATTTA
Found at i:36423450 original size:27 final size:27
Alignment explanation
Indices: 36423411--36423517 Score: 160
Period size: 27 Copynumber: 3.9 Consensus size: 27
36423401 CCACCAGAGC
* * *
36423411 ATTACAGTTATTTTACCCTATAGGGAT
1 ATTACGGTCATTTTACCCTATAGGGGT
* *
36423438 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTATAGGGGT
36423465 ATTACGGTCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTATAGGGGT
36423492 ATTACGGTCATTTTACCCTATGAGGG
1 ATTACGGTCATTTTACCCTAT-AGGG
36423518 CATTTCGGGA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 68 0.94
28 4 0.06
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTATAGGGGT
Found at i:36423521 original size:54 final size:54
Alignment explanation
Indices: 36423409--36423511 Score: 179
Period size: 54 Copynumber: 1.9 Consensus size: 54
36423399 ACCCACCAGA
*
36423409 GCATTACAGTTATTTTACCCTATAGGGATATTACGGTCATTTTACCCTACAGGG
1 GCATTACAGTCATTTTACCCTATAGGGATATTACGGTCATTTTACCCTACAGGG
* *
36423463 GCATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTA
1 GCATTACAGTCATTTTACCCTATAGGGATATTACGGTCATTTTACCCTA
36423512 TGAGGGCATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (54 bp):
GCATTACAGTCATTTTACCCTATAGGGATATTACGGTCATTTTACCCTACAGGG
Found at i:36431705 original size:15 final size:15
Alignment explanation
Indices: 36431685--36431714 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36431675 GATGTTGTAA
36431685 GTAATTCATCTATTT
1 GTAATTCATCTATTT
36431700 GTAATTCATCTATTT
1 GTAATTCATCTATTT
36431715 CGATAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (15 bp):
GTAATTCATCTATTT
Found at i:36431904 original size:25 final size:27
Alignment explanation
Indices: 36431862--36431913 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
36431852 CATCTATAAC
36431862 ATTTTATTGTTTTATCTTTT-TTTTCT
1 ATTTTATTGTTTTATCTTTTCTTTTCT
36431888 ATTTT-TTGTTGTT-TCTTTTCTTTTCT
1 ATTTTATTGTT-TTATCTTTTCTTTTCT
36431914 GTATGTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.08, C:0.10, G:0.06, T:0.77
Consensus pattern (27 bp):
ATTTTATTGTTTTATCTTTTCTTTTCT
Found at i:36433624 original size:138 final size:138
Alignment explanation
Indices: 36433369--36433642 Score: 327
Period size: 138 Copynumber: 2.0 Consensus size: 138
36433359 GTCATTACGA
* * * * * * *
36433369 TTACCGTGTTTTGGGTGCTAGTCCTGAATGTCCTACCGGTGGTTGAGTTTCCAGCATGTGTTGCG
1 TTACCATGTTTCGGGTGCTAGTCCTGAATGTCCTACCGATGGCTAAGTATCCAGCATGTGTTGAG
* * * * * * *
36433434 GTTACTTGACAACTTGTGTGAGCAACACCGTGTAGCTACGTTCTGAATGACAGCTTGTGTGAGCA
66 GATACTTGACAACTTGTATGAGCAACACCATGTAGCTACATTCCGAACGACAGCTTGTATGAGCA
36433499 GACCCAAG
131 GACCCAAG
* * *
36433507 TTACCATGTTTCGGGTGCTAGTCTTGAATTTCCTACCGATGGCTAAG-ATCCGGCAT-TAGTTGA
1 TTACCATGTTTCGGGTGCTAGTCCTGAATGTCCTACCGATGGCTAAGTATCCAGCATGT-GTTGA
* * * *
36433570 GGATACTTGACATCTTGTATGAGCAGCATCATGTAGCTTACATTCCGAGCGACAGCTTGTATGAG
65 GGATACTTGACAACTTGTATGAGCAACACCATGTAGC-TACATTCCGAACGACAGCTTGTATGAG
36433635 CAGACCCA
129 CAGACCCA
36433643 TTTATAGCTC
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
136 1 0.01
137 42 0.37
138 70 0.62
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.31
Consensus pattern (138 bp):
TTACCATGTTTCGGGTGCTAGTCCTGAATGTCCTACCGATGGCTAAGTATCCAGCATGTGTTGAG
GATACTTGACAACTTGTATGAGCAACACCATGTAGCTACATTCCGAACGACAGCTTGTATGAGCA
GACCCAAG
Found at i:36439491 original size:42 final size:42
Alignment explanation
Indices: 36439443--36439643 Score: 230
Period size: 42 Copynumber: 4.8 Consensus size: 42
36439433 GCATATCGAA
* *
36439443 AGTTGAACAGAAGCTCATGAGAGCTAAATAGAAAGC-CATAAG
1 AGTTGAACAGAAGCTCATAAGAGCTAAACAGAAA-CTCATAAG
* * * *
36439485 GGTTGAACAGAAGCTCGTAAGAGCTGAAC-GAAAACTCATATG
1 AGTTGAACAGAAGCTCATAAGAGCTAAACAG-AAACTCATAAG
* * *
36439527 AGTTAAACAAAAGCTCATAAGAGCTGAACAGAAACTCATAAG
1 AGTTGAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAG
* *
36439569 AGTTGAACAGAAGCTCGA-AAGAGCTAAACGGAAACTCATATG
1 AGTTGAACAGAAGCTC-ATAAGAGCTAAACAGAAACTCATAAG
* *
36439611 AGTTAAACAAAAGCTCATAAGAGCTAAAC-GAAA
1 AGTTGAACAGAAGCTCATAAGAGCTAAACAGAAA
36439644 AGTAAAACAT
Statistics
Matches: 136, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
41 7 0.05
42 127 0.93
43 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (42 bp):
AGTTGAACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAG
Found at i:36439496 original size:21 final size:22
Alignment explanation
Indices: 36439443--36439633 Score: 159
Period size: 21 Copynumber: 9.1 Consensus size: 22
36439433 GCATATCGAA
*
36439443 AGTTGAACAG-AAGCTCATGAG
1 AGTTGAACAGAAAGCTCATAAG
* * *
36439464 AGCTAAATAGAAAGC-CATAAG
1 AGTTGAACAGAAAGCTCATAAG
* *
36439485 GGTTGAACAG-AAGCTCGTAAG
1 AGTTGAACAGAAAGCTCATAAG
* * *
36439506 AGCTGAAC-GAAAACTCATATG
1 AGTTGAACAGAAAGCTCATAAG
*
36439527 AGTTAAACA-AAAGCTCATAAG
1 AGTTGAACAGAAAGCTCATAAG
*
36439548 AGCTGAACAGAAA-CTCATAAG
1 AGTTGAACAGAAAGCTCATAAG
36439569 AGTTGAACAG-AAGCTCGA-AAG
1 AGTTGAACAGAAAGCTC-ATAAG
* * * *
36439590 AGCTAAACGGAAA-CTCATATG
1 AGTTGAACAGAAAGCTCATAAG
*
36439611 AGTTAAACA-AAAGCTCATAAG
1 AGTTGAACAGAAAGCTCATAAG
36439632 AG
1 AG
36439634 CTAAACGAAA
Statistics
Matches: 132, Mismatches: 28, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
20 11 0.08
21 111 0.84
22 10 0.08
ACGTcount: A:0.45, C:0.16, G:0.22, T:0.17
Consensus pattern (22 bp):
AGTTGAACAGAAAGCTCATAAG
Found at i:36439604 original size:84 final size:84
Alignment explanation
Indices: 36439443--36439643 Score: 298
Period size: 84 Copynumber: 2.4 Consensus size: 84
36439433 GCATATCGAA
* * * * * *
36439443 AGTTGAACAGAAGCTCATGAGAGCTAAATAGAAAGCCATAAGGGTTGAACAGAAGCTCGTAAGAG
1 AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAAGCCATAAGAGTTGAACAGAAGCTCGAAAGAG
*
36439508 CTGAACGAAAACTCATATG
66 CTAAACGAAAACTCATATG
*
36439527 AGTTAAACAAAAGCTCATAAGAGCTGAACAGAAA-CTCATAAGAGTTGAACAGAAGCTCGAAAGA
1 AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAAGC-CATAAGAGTTGAACAGAAGCTCGAAAGA
*
36439591 GCTAAACGGAAACTCATATG
65 GCTAAACGAAAACTCATATG
36439611 AGTTAAACAAAAGCTCATAAGAGCTAAAC-GAAA
1 AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAA
36439644 AGTAAAACAT
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
83 5 0.05
84 101 0.95
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (84 bp):
AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAAGCCATAAGAGTTGAACAGAAGCTCGAAAGAG
CTAAACGAAAACTCATATG
Found at i:36442618 original size:16 final size:17
Alignment explanation
Indices: 36442597--36442631 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
36442587 TCTTTTTTTT
*
36442597 CTAATTTCCAAA-TTAC
1 CTAATTACCAAATTTAC
36442613 CTAATTACCAAATTTAC
1 CTAATTACCAAATTTAC
36442630 CT
1 CT
36442632 TTTAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (17 bp):
CTAATTACCAAATTTAC
Found at i:36447392 original size:68 final size:68
Alignment explanation
Indices: 36447260--36447396 Score: 231
Period size: 68 Copynumber: 2.0 Consensus size: 68
36447250 CAGAAACTCA
*
36447260 GAGAATTTTTCACAAAATTTCAAAATTTTCCAATGTGTAGGGGACACACGCCTGTATGGTCAGGC
1 GAGAATTTTTCACAAAATTTCAAAATTTTCCAATGTGTAGGGGACACACGCCTGTATGGCCAGGC
36447325 CGT
66 CGT
* *
36447328 GAGAATTTTTCACAAAATTTCAAAATTTTCCAATGTGTAGGGGACACATG-CTCGTGTGGCCAGG
1 GAGAATTTTTCACAAAATTTCAAAATTTTCCAATGTGTAGGGGACACACGCCT-GTATGGCCAGG
36447392 CCGT
65 CCGT
36447396 G
1 G
36447397 TGGCTCACAC
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
67 2 0.03
68 63 0.97
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (68 bp):
GAGAATTTTTCACAAAATTTCAAAATTTTCCAATGTGTAGGGGACACACGCCTGTATGGCCAGGC
CGT
Found at i:36453117 original size:18 final size:19
Alignment explanation
Indices: 36453094--36453129 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36453084 TGAAATTTAG
36453094 ATGATTT-TGGATGAAATC
1 ATGATTTATGGATGAAATC
*
36453112 ATGATTTATGGATTAAAT
1 ATGATTTATGGATGAAAT
36453130 TGAAAAGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (19 bp):
ATGATTTATGGATGAAATC
Found at i:36453964 original size:24 final size:25
Alignment explanation
Indices: 36453937--36454003 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
36453927 TTCTCTTCAA
36453937 AGCTACCCATTAATTGCTCTTTG-G
1 AGCTACCCATTAATTGCTCTTTGTG
* *
36453961 AGCTACCCGTT-ATAGGCTCTTTGTG
1 AGCTACCCATTAAT-TGCTCTTTGTG
*
36453986 AGCTTCCCATTATATTGC
1 AGCTACCCATTA-ATTGC
36454004 CCAGATAAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 2 0.06
24 18 0.53
25 10 0.29
26 2 0.06
27 2 0.06
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (25 bp):
AGCTACCCATTAATTGCTCTTTGTG
Found at i:36459386 original size:32 final size:32
Alignment explanation
Indices: 36459350--36459423 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
36459340 TAAGATATTA
* * *
36459350 AATTGTAACTAAATGCATATATATAGGTGTTC
1 AATTGAAAATAAATGCATATATATAAGTGTTC
36459382 AATTGAAAATAAATGCATATATATAAGTGTTC
1 AATTGAAAATAAATGCATATATATAAGTGTTC
36459414 AATTGAAAAT
1 AATTGAAAAT
36459424 TTGGATGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.35
Consensus pattern (32 bp):
AATTGAAAATAAATGCATATATATAAGTGTTC
Found at i:36460075 original size:14 final size:14
Alignment explanation
Indices: 36460052--36460082 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36460042 GGTATTATAG
36460052 GAAACGTGTCAATC
1 GAAACGTGTCAATC
*
36460066 GAAACTTGTCAATC
1 GAAACGTGTCAATC
36460080 GAA
1 GAA
36460083 TCTACGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (14 bp):
GAAACGTGTCAATC
Found at i:36477125 original size:29 final size:29
Alignment explanation
Indices: 36477093--36477150 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
36477083 CCGTGACCCA
* *
36477093 CTATCTATTGGAGATAGGAACCAGTCGGT
1 CTATCTATTAGAGATAAGAACCAGTCGGT
36477122 CTATCTATTAGAGATAAGAACCAGTCGGT
1 CTATCTATTAGAGATAAGAACCAGTCGGT
36477151 ATAGGTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (29 bp):
CTATCTATTAGAGATAAGAACCAGTCGGT
Found at i:36477585 original size:32 final size:32
Alignment explanation
Indices: 36477548--36477621 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
36477538 AAAAGTAATT
** *
36477548 GGTGTGAACAT-ATGGACTTGGATGGTCCCTTG
1 GGTGTGAACATCA-GGACTTGGACAGTCCATTG
*
36477580 GGTGTGAACATCAGGAGTTGGACAGTCCATTG
1 GGTGTGAACATCAGGACTTGGACAGTCCATTG
36477612 GGTGTGAACA
1 GGTGTGAACA
36477622 AAAGCAGCTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 36 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (32 bp):
GGTGTGAACATCAGGACTTGGACAGTCCATTG
Found at i:36484532 original size:14 final size:15
Alignment explanation
Indices: 36484513--36484545 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
36484503 CATGCGCATG
36484513 AATAAAATAA-AAAT
1 AATAAAATAATAAAT
36484527 AAT-AAATAATAAAT
1 AATAAAATAATAAAT
36484541 AATAA
1 AATAA
36484546 TAATGATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.35
14 10 0.59
15 1 0.06
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:36484535 original size:7 final size:7
Alignment explanation
Indices: 36484517--36484549 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
36484507 CGCATGAATA
36484517 AAATAA-
1 AAATAAT
36484523 AAATAAT
1 AAATAAT
36484530 AAATAAT
1 AAATAAT
36484537 AAATAAT
1 AAATAAT
36484544 -AATAAT
1 AAATAAT
36484550 GATACAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATAAT
Found at i:36484618 original size:23 final size:23
Alignment explanation
Indices: 36484572--36484618 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36484562 ATGATGCCAC
**
36484572 ATAATAATATTAATAATATTAAA
1 ATAATAATATTAATAATAAAAAA
36484595 ATAATTAAT-TTAATAATAAAAAA
1 ATAA-TAATATTAATAATAAAAAA
36484618 A
1 A
36484619 ACTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
ATAATAATATTAATAATAAAAAA
Done.