Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 121 of 170
Found at i:36968555 original size:80 final size:80
Alignment explanation
Indices: 36968412--36968564 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 80
36968402 TTTTAACTGC
* ** * *
36968412 AATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATCTATTCCATTGCACTGCCAGGGGAGTA
1 AATGTCAGGGAAGCAAGATTCACCAATGTGGCTTTAATCTATTCCACTGCACTGCCAGAGGAGTA
36968477 AGATTCGCCGTTATA
66 AGATTCGCCGTTATA
* *
36968492 AATGTCAGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTGCA-TCGCCTGAGGAGT
1 AATGTCAGGGAAGCAAGATTCACCAATGTGGCTTTAATCTATTCCACTGCACT-GCCAGAGGAGT
36968556 AAGATTCGC
65 AAGATTCGC
36968565 TGTTGTAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.02
80 64 0.98
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (80 bp):
AATGTCAGGGAAGCAAGATTCACCAATGTGGCTTTAATCTATTCCACTGCACTGCCAGAGGAGTA
AGATTCGCCGTTATA
Found at i:36968610 original size:50 final size:50
Alignment explanation
Indices: 36968556--36968713 Score: 149
Period size: 50 Copynumber: 3.2 Consensus size: 50
36968546 CCTGAGGAGT
* * * *
36968556 AAGATTCGCTGTTGTAGCTTTAATATTTTTAATTGCAATATCGGGGAAGG
1 AAGATTCACTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGC
* * * * * ** * * * *
36968606 AAGATTCACCGATATGGCTTTAATCTATTCCACTAC-ATCGCCTGGGG-AGT
1 AAGATTCACTGTTGTAGCTTTAATCTTTTTAATTGCAAT-GTC-GGGGAAGC
36968656 AAGATTCACTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGC
1 AAGATTCACTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGC
36968706 AAGATTCA
1 AAGATTCA
36968714 TCGATGTGGC
Statistics
Matches: 79, Mismatches: 25, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
49 6 0.08
50 67 0.85
51 6 0.08
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (50 bp):
AAGATTCACTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGC
Found at i:36968626 original size:180 final size:179
Alignment explanation
Indices: 36968312--36968662 Score: 456
Period size: 180 Copynumber: 1.9 Consensus size: 179
36968302 TTTTAACTGC
* ** *
36968312 AATGTCGGAGAAGCAAGATTCGCCGTTATGGCTTTAATTTGTTCCACTGCACCGCCAATGAAATA
1 AATGTCGGAGAAGCAAGATTCACCAATATGGCTTTAATCTGTTCCACTGCACCGCC-ATGAAATA
* * * * *
36968377 AGATTTGCCATTATAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACTGATGTG
65 AGATTCGCCATTATAGCTTTAATATTTTTAACTGCAATATCGGGGAAGCAAGATTCACCGATATG
* *
36968442 GCTTTAATCTATTCCATTGCA-CTGCCAGGGGAGTAAGATTCGCCGTTATA
130 GCTTTAATCTATTCCACTACATC-GCCAGGGGAGTAAGATTCGCCGTTATA
* * *
36968492 AATGTCAGG-GAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTGCATCGCC-TGAGGAG
1 AATGTC-GGAGAAGCAAGATTCACCAATATGGCTTTAATCTGTTCCACTGCACCGCCATGA--AA
** * * *
36968555 TAAGATTCGCTGTTGTAGCTTTAATATTTTTAATTGCAATATCGGGGAAGGAAGATTCACCGATA
63 TAAGATTCGCCATTATAGCTTTAATATTTTTAACTGCAATATCGGGGAAGCAAGATTCACCGATA
*
36968620 TGGCTTTAATCTATTCCACTACATCGCCTGGGGAGTAAGATTC
128 TGGCTTTAATCTATTCCACTACATCGCCAGGGGAGTAAGATTC
36968663 ACTGTTGTAG
Statistics
Matches: 147, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
178 3 0.02
180 141 0.96
181 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (179 bp):
AATGTCGGAGAAGCAAGATTCACCAATATGGCTTTAATCTGTTCCACTGCACCGCCATGAAATAA
GATTCGCCATTATAGCTTTAATATTTTTAACTGCAATATCGGGGAAGCAAGATTCACCGATATGG
CTTTAATCTATTCCACTACATCGCCAGGGGAGTAAGATTCGCCGTTATA
Found at i:36968672 original size:100 final size:100
Alignment explanation
Indices: 36968499--36968742 Score: 389
Period size: 100 Copynumber: 2.4 Consensus size: 100
36968489 ATAAATGTCA
* * *
36968499 GGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTGCATCGCCTGAGGAGTAAGATTCG
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCCTGAGGAGTAAGATTCA
36968564 CTGTTGTAGCTTTAATATTTTTAATTGCAATATCG
66 CTGTTGTAGCTTTAATATTTTTAATTGCAATATCG
* * * *
36968599 GGGAAGGAAGATTCACCGATATGGCTTTAATCTATTCCACTACATCGCCTGGGGAGTAAGATTCA
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCCTGAGGAGTAAGATTCA
* *
36968664 CTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCG
66 CTGTTGTAGCTTTAATATTTTTAATTGCAATATCG
* *
36968699 GGGAAGCAAGATTCATCGATGTGGCTTTAATATGTTCCACTACA
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACA
36968743 CCTCTTGGGA
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 130 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (100 bp):
GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCCTGAGGAGTAAGATTCA
CTGTTGTAGCTTTAATATTTTTAATTGCAATATCG
Found at i:36968726 original size:50 final size:49
Alignment explanation
Indices: 36968492--36968729 Score: 142
Period size: 50 Copynumber: 4.8 Consensus size: 49
36968482 CGCCGTTATA
* * * ** *
36968492 AATGTCAGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTGC
1 AATGTCGGGGAAGCAAGATTCA-CGATGTGGCTTTAATCTTTTTAATTGC
* * * * * * *
36968542 -ATCGCCTGAGG-AGTAAGATTCGCTGTTGTAGCTTTAATATTTTTAATTGC
1 AAT-GTC-GGGGAAGCAAGATTCAC-GATGTGGCTTTAATCTTTTTAATTGC
* * * * ** * *
36968592 AATATCGGGGAAGGAAGATTCACCGATATGGCTTTAATCTATTCCACTAC
1 AATGTCGGGGAAGCAAGATTCA-CGATGTGGCTTTAATCTTTTTAATTGC
* * * *
36968642 -ATCGCCTGGGG-AGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAATTGC
1 AAT-GTC-GGGGAAGCAAGATTCAC-GATGTGGCTTTAATCTTTTTAATTGC
36968692 AATGTCGGGGAAGCAAGATTCATCGATGTGGCTTTAAT
1 AATGTCGGGGAAGCAAGATTCA-CGATGTGGCTTTAAT
36968730 ATGTTCCACT
Statistics
Matches: 134, Mismatches: 42, Indels: 24
0.67 0.21 0.12
Matches are distributed among these distances:
49 13 0.10
50 109 0.81
51 12 0.09
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (49 bp):
AATGTCGGGGAAGCAAGATTCACGATGTGGCTTTAATCTTTTTAATTGC
Found at i:36969143 original size:88 final size:88
Alignment explanation
Indices: 36969025--36969861 Score: 965
Period size: 88 Copynumber: 9.6 Consensus size: 88
36969015 GGACTTGTAA
* * * * *
36969025 TCTTCGATCTGCTTCACTGT-TGATGCAGGAAGGCAAGATCTGCTATCTTCAACTTGCTACACTG
1 TCTTCGATCTGCTTCGCTGTCAG-TGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
* *
36969089 CGACCGAGGGAGGCAAGGCTCGTG
65 CAACCGAGGGAGGCAAGGCTGGTG
* * * **
36969113 TCTTCGATCTGCTTCGCTGTCAGTGTAGGAAGGCAAGATCTGCTATTTTTAACCTTCTCTGCTGC
1 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
36969178 AACAC-AGGGAGGCAAGGCTGGTG
66 AAC-CGAGGGAGGCAAGGCTGGTG
* * * * *
36969201 TCTTCGATCTGCTTCGCTGTCAGTGTATGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTAC
1 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* * *
36969266 AACCTAGGGAGACAAGGTTGGTG
66 AACCGAGGGAGGCAAGGCTGGTG
* * * *
36969289 TCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
*
36969354 AACCCAGGGAGGCAAGGCTGGTG
66 AACCGAGGGAGGCAAGGCTGGTG
* * * * * * *
36969377 TCTTCGATTTGTTTCGCTGTCGGTGCAGGAA-GCAAGATCTGCTATTTTTAACCTACTCCGCTAC
1 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* **
36969441 AACCCAATGAGGCAAGGCTGGTG
66 AACCGAGGGAGGCAAGGCTGGTG
36969464 TCTTCGATCTGCTTCGCTGTCTA-TGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
1 TCTTCGATCTGCTTCGCTGTC-AGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
* * * * ** *
36969528 TAACCTATGGAGGTAAGATTGGGG
65 CAACCGAGGGAGGCAAGGCTGGTG
* * ** *
36969552 TCTTCGATCTGCTTCGCTGTCTA-TGTAGGAAGGCAAGATCTACTATCTTTAACCAACTCCGCTG
1 TCTTCGATCTGCTTCGCTGTC-AGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
* *
36969616 CAACCGATGGAGGCAAGGCT-TTG
65 CAACCGAGGGAGGCAAGGCTGGTG
* * * *
36969639 TTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCTGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* * *
36969704 AACTGATGGAGGCAAGGCT-TTG
66 AACCGAGGGAGGCAAGGCTGGTG
* * * * * *
36969726 TTTTTGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCAATCTTTAACCCGCTCTACTGC
1 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* *
36969791 AACCGATGGAGGCAAGGCT-TTG
66 AACCGAGGGAGGCAAGGCTGGTG
*
36969813 -CTTTCGATCTGCTTCACTGTC-GATGCAGGAAGGCAAGATCTGCTATCTT
1 TC-TTCGATCTGCTTCGCTGTCAG-TGCAGGAAGGCAAGATCTGCTATCTT
36969862 CACTGATCTG
Statistics
Matches: 662, Mismatches: 79, Indels: 17
0.87 0.10 0.02
Matches are distributed among these distances:
86 1 0.00
87 281 0.42
88 378 0.57
89 2 0.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
AACCGAGGGAGGCAAGGCTGGTG
Found at i:36969147 original size:44 final size:44
Alignment explanation
Indices: 36969099--36969237 Score: 104
Period size: 44 Copynumber: 3.2 Consensus size: 44
36969089 CGACCGAGGG
36969099 AGGCAAGGCTCGTGTCTTCGATCTGCTTCGCTGTCAGTGTAGGA
1 AGGCAAGGCTCGTGTCTTCGATCTGCTTCGCTGTCAGTGTAGGA
* * * ** * * **** *
36969143 AGGCAA-GATCTGCTATTTTTAACCTTC-TCTGCTG-CAACACAGGG
1 AGGCAAGGCTC-G-TGTCTTCGATCTGCTTC-GCTGTCAGTGTAGGA
* *
36969187 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGTATGA
1 AGGCAAGGCTCGTGTCTTCGATCTGCTTCGCTGTCAGTGTAGGA
36969231 AGGCAAG
1 AGGCAAG
36969238 ATCTGCTATT
Statistics
Matches: 63, Mismatches: 26, Indels: 12
0.62 0.26 0.12
Matches are distributed among these distances:
43 15 0.24
44 34 0.54
45 14 0.22
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (44 bp):
AGGCAAGGCTCGTGTCTTCGATCTGCTTCGCTGTCAGTGTAGGA
Found at i:36969369 original size:44 final size:44
Alignment explanation
Indices: 36969231--36969369 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 44
36969221 CAGTGTATGA
*
36969231 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCTAGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
* * * * * * * * * **** *
36969275 AGACAAGGT-TGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGA
1 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCT-ACAACCCAGGG
*
36969319 AGGCAAGATCTGCTATTTTTAACCTGCTCCACTACAACCCAGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
36969363 AGGCAAG
1 AGGCAAG
36969370 GCTGGTGTCT
Statistics
Matches: 63, Mismatches: 30, Indels: 4
0.65 0.31 0.04
Matches are distributed among these distances:
43 17 0.27
44 30 0.48
45 16 0.25
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (44 bp):
AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
Found at i:36969499 original size:263 final size:262
Alignment explanation
Indices: 36969025--36969861 Score: 1056
Period size: 263 Copynumber: 3.2 Consensus size: 262
36969015 GGACTTGTAA
* * * *
36969025 TCTTCGATCTGCTTCACTGTTGATGCAGGAAGGCAAGATCTGCTATCTTCAACTTGCTACACTGC
1 TCTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* *
36969090 GACCGAGGGAGGCAAGGCTCGTGTCTTCGATCTGCTTCGCTGTCAGTGTAGGAAGGCAAGATCTG
66 AACCGAGGGAGGCAAGGCT-GTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTG
* * * * **
36969155 CTATTTTTAACCTTCTCTGCTGCAACACAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
130 CTATTTTTAACCTACTCCGCTACAACCCAATGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
* * * * * * *
36969220 TCAGTGTATGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCTAGGGAGACAAGGTT
195 TCA-TGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCTATGGAGGCAAGGTT
36969285 GGTG
259 GGTG
* * * * *
36969289 TCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTAC
1 TCTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* * * *
36969354 AACCCAGGGAGGCAAGGCTGGTGTCTTCGATTTGTTTCGCTGTCGGTGCAGGAA-GCAAGATCTG
66 AACCGAGGGAGGCAAGGCT-GTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTG
36969418 CTATTTTTAACCTACTCCGCTACAACCCAATGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
130 CTATTTTTAACCTACTCCGCTACAACCCAATGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
* * *
36969483 TCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGTAACCTATGGAGGTAAGATT
195 TC-ATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCTATGGAGGCAAGGTT
*
36969548 GGGG
259 GGTG
* * * * ** *
36969552 TCTTCGATCTGCTTCGCTGTCTATGTAGGAAGGCAAGATCTACTATCTTTAACCAACTCCGCTGC
1 TCTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* * * * *
36969617 AACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTAC
66 AACCGAGGGAGGCAAGGCTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGC
* * * ** * * *
36969682 TATCTTTAACCTGCTCCACTACAA-CTGATGGAGGCAAGGCT-TTGTTTTTGATCTGCTTCGCTG
131 TATTTTTAACCTACTCCGCTACAACCCAAT-GAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTG
* * * *
36969745 TCAATGCAGGAAGGCAAGATCTGCAATCTTTAACCCGCTCTACTGCAACCGATGGAGGCAAGGCT
195 TC-ATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCTATGGAGGCAAGG-T
36969810 T--TG
258 TGGTG
36969813 -CTTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
1 TC-TTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
36969862 CACTGATCTG
Statistics
Matches: 495, Mismatches: 73, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
260 1 0.00
261 44 0.09
262 105 0.21
263 241 0.49
264 104 0.21
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (262 bp):
TCTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
AACCGAGGGAGGCAAGGCTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGC
TATTTTTAACCTACTCCGCTACAACCCAATGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGT
CATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCTATGGAGGCAAGGTTGG
TG
Found at i:36969590 original size:44 final size:45
Alignment explanation
Indices: 36969463--36969592 Score: 113
Period size: 44 Copynumber: 2.9 Consensus size: 45
36969453 CAAGGCTGGT
* *
36969463 GTCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCT
1 GTCTTCGATCTGCTTCGCTGTCTATGTAGGAAGGCAAGATCTGCG
* ** * * * * ** * *
36969508 ATCTTTAACCTGCTCCACTGT-AACCTATGG-AGGTAAGAT-TGGG
1 GTCTTCGATCTGCTTCGCTGTCTATGTA-GGAAGGCAAGATCTGCG
36969551 GTCTTCGATCTGCTTCGCTGTCTATGTAGGAAGGCAAGATCT
1 GTCTTCGATCTGCTTCGCTGTCTATGTAGGAAGGCAAGATCT
36969593 ACTATCTTTA
Statistics
Matches: 58, Mismatches: 23, Indels: 8
0.65 0.26 0.09
Matches are distributed among these distances:
43 19 0.33
44 21 0.36
45 18 0.31
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (45 bp):
GTCTTCGATCTGCTTCGCTGTCTATGTAGGAAGGCAAGATCTGCG
Found at i:36969675 original size:43 final size:42
Alignment explanation
Indices: 36969626--36969762 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 42
36969616 CAACCGATGG
36969626 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGCTTTGTTTT-GATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
36969669 AGGCAAGATCTACTATCTTTAACCTGCTCCACT-ACAACTG-ATGG-
1 AGGCAAG-GCT-TTGT-TTTGATCTGCTTCGCTGTCAA-TGCA-GGA
36969713 AGGCAAGGCTTTGTTTTTGATCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGCTTTG-TTTTGATCTGCTTCGCTGTCAATGCAGGA
36969756 AGGCAAG
1 AGGCAAG
36969763 ATCTGCAATC
Statistics
Matches: 69, Mismatches: 16, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
42 17 0.25
43 21 0.30
44 13 0.19
45 15 0.22
46 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (42 bp):
AGGCAAGGCTTTGTTTTGATCTGCTTCGCTGTCAATGCAGGA
Found at i:36971053 original size:6 final size:6
Alignment explanation
Indices: 36971044--36971079 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
36971034 CATTTTTACT
36971044 TTTTCA TTTTCA TTTTTCA TTTTCA TTTTTCA TTTT
1 TTTTCA TTTTCA -TTTTCA TTTTCA -TTTTCA TTTT
36971080 TCACCTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 16 0.57
7 12 0.43
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTTCA
Found at i:36971053 original size:7 final size:7
Alignment explanation
Indices: 36971034--36971082 Score: 68
Period size: 7 Copynumber: 7.3 Consensus size: 7
36971024 TTAGCCTCTC
36971034 CATTTTT
1 CATTTTT
36971041 -ACTTTTT
1 CA-TTTTT
36971048 CA-TTTT
1 CATTTTT
36971054 CATTTTT
1 CATTTTT
36971061 CA-TTTT
1 CATTTTT
36971067 CATTTTT
1 CATTTTT
36971074 CATTTTT
1 CATTTTT
36971081 CA
1 CA
36971083 CCTTTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
6 13 0.34
7 24 0.63
8 1 0.03
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:36971059 original size:13 final size:13
Alignment explanation
Indices: 36971043--36971079 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
36971033 CCATTTTTAC
36971043 TTTTTCATTTTCA
1 TTTTTCATTTTCA
36971056 TTTTTCATTTTCA
1 TTTTTCATTTTCA
36971069 TTTTTCATTTT
1 TTTTTCATTTT
36971080 TCACCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTTCATTTTCA
Found at i:36971081 original size:20 final size:19
Alignment explanation
Indices: 36971034--36971082 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
36971024 TTAGCCTCTC
*
36971034 CATTTTTACTTTTTCATTTT
1 CATTTTT-CATTTTCATTTT
36971054 CATTTTTCATTTTCATTTTT
1 CATTTTTCATTTTCA-TTTT
36971074 CATTTTTCA
1 CATTTTTCA
36971083 CCTTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (19 bp):
CATTTTTCATTTTCATTTT
Found at i:36971936 original size:14 final size:14
Alignment explanation
Indices: 36971917--36971961 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
36971907 TCTCCTTTTC
36971917 TTTTTCTTTTCTTT
1 TTTTTCTTTTCTTT
* *
36971931 TTTTTCTTCTCTCT
1 TTTTTCTTTTCTTT
36971945 TTTTTCATTTTCATTT
1 TTTTTC-TTTTC-TTT
36971961 T
1 T
36971962 GACATTGATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 18 0.72
15 4 0.16
16 3 0.12
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTCTTTTCTTT
Found at i:36974637 original size:15 final size:15
Alignment explanation
Indices: 36974617--36974646 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36974607 AATAAACTTT
*
36974617 AATGCATGTAATGAA
1 AATGCATGAAATGAA
36974632 AATGCATGAAATGAA
1 AATGCATGAAATGAA
36974647 TGCCTAAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (15 bp):
AATGCATGAAATGAA
Found at i:36977524 original size:64 final size:64
Alignment explanation
Indices: 36977420--36977547 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
36977410 AATTGAAGTC
36977420 TATTTCAAAACTGAGGGGTTAATCCAGCAATTAAGCGCAAGCATCACAATCCATCACAAAACGA
1 TATTTCAAAACTGAGGGGTTAATCCAGCAATTAAGCGCAAGCATCACAATCCATCACAAAACGA
* *
36977484 TATTTCAAAACTGAGGGGTTAATCTAGCAATTAAGTGCAAGCATCACAATCCATCACAAAACGA
1 TATTTCAAAACTGAGGGGTTAATCCAGCAATTAAGCGCAAGCATCACAATCCATCACAAAACGA
36977548 CAGCGTTCAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (64 bp):
TATTTCAAAACTGAGGGGTTAATCCAGCAATTAAGCGCAAGCATCACAATCCATCACAAAACGA
Found at i:36979029 original size:13 final size:13
Alignment explanation
Indices: 36979013--36979037 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36979003 CATTAACGAA
36979013 AATAAATAACATT
1 AATAAATAACATT
36979026 AATAAATAACAT
1 AATAAATAACAT
36979038 GCATCCTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATAAATAACATT
Found at i:36980129 original size:29 final size:29
Alignment explanation
Indices: 36980085--36980189 Score: 133
Period size: 29 Copynumber: 3.6 Consensus size: 29
36980075 AGAAAAATCA
*
36980085 GTGGCAAAACTATAAAATATGGGAAAAAG
1 GTGGCAAAACTGTAAAATATGGGAAAAAG
*
36980114 GTGGCAAAACTGTAAAACATGGGAAAAAG
1 GTGGCAAAACTGTAAAATATGGGAAAAAG
* *
36980143 GTGGCAGAACTGTAAAATGT-GGAAAACTA-
1 GTGGCAAAACTGTAAAATATGGGAAAA--AG
*
36980172 GTGGCAAAATTGTAAAAT
1 GTGGCAAAACTGTAAAAT
36980190 TTGAAAAGTA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
28 6 0.09
29 60 0.90
30 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.26, T:0.19
Consensus pattern (29 bp):
GTGGCAAAACTGTAAAATATGGGAAAAAG
Found at i:36980195 original size:28 final size:28
Alignment explanation
Indices: 36980143--36980231 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
36980133 TGGGAAAAAG
*
36980143 GTGGCAGAACTGTAAAATGTGGAAAACTA
1 GTGGCAGAACTGTAAAAT-TTGAAAACTA
* * *
36980172 GTGGCAAAATTGTAAAATTTGAAAAGTA
1 GTGGCAGAACTGTAAAATTTGAAAACTA
* * *
36980200 CTGGCAGGACTGTAAAATTATTAAAAC-A
1 GTGGCAGAACTGTAAAATT-TGAAAACTA
36980228 GTGG
1 GTGG
36980232 TGCATTGTCA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
28 27 0.56
29 21 0.44
ACGTcount: A:0.42, C:0.09, G:0.25, T:0.25
Consensus pattern (28 bp):
GTGGCAGAACTGTAAAATTTGAAAACTA
Found at i:36980605 original size:5 final size:5
Alignment explanation
Indices: 36980597--36980623 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
36980587 AAAGATAAGA
36980597 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
36980624 GGGATATTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:36987681 original size:23 final size:23
Alignment explanation
Indices: 36987654--36987752 Score: 110
Period size: 23 Copynumber: 4.3 Consensus size: 23
36987644 ATAAGTGCCA
36987654 CACTGATATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
*
36987677 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
* * **
36987700 CATTG-TAATGTAGTCGTAGCTAC
1 CACTGAT-ATGTAGCCAAAGCTAC
* * *
36987723 CACTAAAATGTAGCCAAAGTTAC
1 CACTGATATGTAGCCAAAGCTAC
36987746 CACTGAT
1 CACTGAT
36987753 CAATAACACT
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
22 1 0.02
23 60 0.98
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCAAAGCTAC
Found at i:37007024 original size:25 final size:24
Alignment explanation
Indices: 37006965--37007100 Score: 123
Period size: 24 Copynumber: 5.6 Consensus size: 24
37006955 ATTCATGTAT
* *
37006965 GCTCATACGAGCTGTAAA-CAGTAA
1 GCTCATACGAGCTG-AAATCGGGAA
* * *
37006989 GCTCTTCCGAGCTGAATAACGGGAA
1 GCTCATACGAGCTGAA-ATCGGGAA
* * *
37007014 GCTCATGCGAGCTAAATATTGGGAA
1 GCTCATACGAGCTGAA-ATCGGGAA
*
37007039 GCTCATAAGAGCTGAAATCGGGAA
1 GCTCATACGAGCTGAAATCGGGAA
* *
37007063 GCTCATGA-GACCTGAAATTGGGAA
1 GCTCAT-ACGAGCTGAAATCGGGAA
37007087 GCTCATACGAGCTG
1 GCTCATACGAGCTG
37007101 TGGTGTGTCC
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
23 3 0.03
24 51 0.55
25 38 0.41
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (24 bp):
GCTCATACGAGCTGAAATCGGGAA
Found at i:37007092 original size:48 final size:50
Alignment explanation
Indices: 37006997--37007100 Score: 149
Period size: 48 Copynumber: 2.1 Consensus size: 50
37006987 AAGCTCTTCC
* *
37006997 GAGCTGAATAACGGGAAGCTCATGCGAGCTAAATATTGGGAAGCTCATAA
1 GAGCTGAATAACGGGAAGCTCATGAGACCTAAATATTGGGAAGCTCATAA
* * *
37007047 GAGCTGAA-ATCGGGAAGCTCATGAGACCTGAA-ATTGGGAAGCTCATAC
1 GAGCTGAATAACGGGAAGCTCATGAGACCTAAATATTGGGAAGCTCATAA
37007095 GAGCTG
1 GAGCTG
37007101 TGGTGTGTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
48 21 0.43
49 20 0.41
50 8 0.16
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.19
Consensus pattern (50 bp):
GAGCTGAATAACGGGAAGCTCATGAGACCTAAATATTGGGAAGCTCATAA
Found at i:37011835 original size:25 final size:25
Alignment explanation
Indices: 37011791--37011854 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
37011781 ATAAATTAAA
*
37011791 AAATATATAAATATT-TATAAATATC
1 AAATATA-AAATATTGAATAAATATC
* *
37011816 AAATA-AATAATATTGAATAAATTTT
1 AAATATAA-AATATTGAATAAATATC
37011841 AAATATAAAATATT
1 AAATATAAAATATT
37011855 CATCAATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 1 0.03
24 7 0.21
25 23 0.70
26 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
AAATATAAAATATTGAATAAATATC
Found at i:37012389 original size:23 final size:23
Alignment explanation
Indices: 37012363--37012406 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
37012353 AATTTTACAC
*
37012363 AAAATGAAAAACGACAAAGTATA
1 AAAATGAAAAACAACAAAGTATA
37012386 AAAATGAAAAACAACAAAGTA
1 AAAATGAAAAACAACAAAGTA
37012407 AATGATGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.68, C:0.09, G:0.11, T:0.11
Consensus pattern (23 bp):
AAAATGAAAAACAACAAAGTATA
Found at i:37016403 original size:26 final size:26
Alignment explanation
Indices: 37016367--37016459 Score: 107
Period size: 26 Copynumber: 3.6 Consensus size: 26
37016357 TGTTATTGGC
*
37016367 AGCTTTGCTGCGATACTGATACTAGT
1 AGCTTTGCTGCGATACTGATACTGGT
*
37016393 AGCTTTGCTGCGATACTGTTACTGGT
1 AGCTTTGCTGCGATACTGATACTGGT
* * * * *
37016419 AGTTTTGTTACGATACT-ATAACGGGC
1 AGCTTTGCTGCGATACTGAT-ACTGGT
37016445 AGCTTTGCTGCGATA
1 AGCTTTGCTGCGATA
37016460 TTGGTGTGTT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 1 0.02
26 54 0.98
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (26 bp):
AGCTTTGCTGCGATACTGATACTGGT
Found at i:37024062 original size:26 final size:26
Alignment explanation
Indices: 37023980--37024077 Score: 119
Period size: 26 Copynumber: 3.8 Consensus size: 26
37023970 TGGAGGAAGT
* *
37023980 ATACTGTTACTGGCAG-TTTACTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
37024005 ATACTGA-TACTGGCAGCTTTGCTGCG
1 ATACT-ATTACTGGCAGCTTTGCTGCG
* *
37024031 ATACTATTACTAGCAGCTTTGCTGTG
1 ATACTATTACTGGCAGCTTTGCTGCG
**
37024057 ATACTATTAAGGGCAGCTTTG
1 ATACTATTACTGGCAGCTTTG
37024078 ATGTGACATT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
25 15 0.24
26 48 0.76
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:37029347 original size:20 final size:20
Alignment explanation
Indices: 37029306--37029347 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
37029296 ATTTCCACAA
* *
37029306 TGGCTGGCCACATGCCCGTG
1 TGGCTGGCCACACGCCCATG
*
37029326 TGGCTGGCCACACGCCTATG
1 TGGCTGGCCACACGCCCATG
37029346 TG
1 TG
37029348 CCAACCCGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.33, G:0.33, T:0.21
Consensus pattern (20 bp):
TGGCTGGCCACACGCCCATG
Found at i:37047194 original size:123 final size:124
Alignment explanation
Indices: 37046975--37047264 Score: 485
Period size: 123 Copynumber: 2.3 Consensus size: 124
37046965 TTATTTCGAG
*
37046975 TTGACGTTTCTG-GTCAAATAATATAAAATCGCGCCCTCGAGGATGCTAATTGAAAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAATATAAAATCGCGCCCTCGTGGATGCTAATTGAAAAGAAATTGT
37047039 GAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAA-TTTTT
65 GAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTTTTT
* * *
37047098 TTGACGTTTCTGAGCAAATACTATAAAATCGTGCCCTCGTGGATGCTAATTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCGCCCTCGTGGATGCTAATTGAAAAGAAATTGTG
37047163 AAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTTTTT
66 AAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTTTTT
* * * *
37047222 TTTATGTTTCTGAGCAAATAGTATAAAATCGCGCCTTCGTGGA
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCGCCCTCGTGGA
37047265 CGCGATTTTG
Statistics
Matches: 156, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
123 112 0.72
124 44 0.28
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (124 bp):
TTGACGTTTCTGAGCAAATAATATAAAATCGCGCCCTCGTGGATGCTAATTGAAAAGAAATTGTG
AAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTTTTT
Found at i:37049553 original size:23 final size:23
Alignment explanation
Indices: 37049523--37049639 Score: 155
Period size: 23 Copynumber: 4.9 Consensus size: 23
37049513 TAAATTTATC
37049523 AAATAAATTAGGTTAGGGTTTTT
1 AAATAAATTAGGTTAGGGTTTTT
37049546 AAATAAATTAGGTTAGGGTTTTT
1 AAATAAATTAGGTTAGGGTTTTT
37049569 AAATAAATTAGGTTAGGG-TTTT
1 AAATAAATTAGGTTAGGGTTTTT
*
37049591 AATTAAATTAGGGTAGGGTTAGGGTTTTT
1 AAATAAA-T----TA-GGTTAGGGTTTTT
*
37049620 AATTAAATTAGGTTAGGGTT
1 AAATAAATTAGGTTAGGGTT
37049640 AGGGTTTTTA
Statistics
Matches: 86, Mismatches: 1, Indels: 14
0.85 0.01 0.14
Matches are distributed among these distances:
22 10 0.12
23 52 0.60
24 2 0.02
27 2 0.02
28 9 0.10
29 11 0.13
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (23 bp):
AAATAAATTAGGTTAGGGTTTTT
Found at i:37049627 original size:29 final size:29
Alignment explanation
Indices: 37049579--37050019 Score: 708
Period size: 29 Copynumber: 15.3 Consensus size: 29
37049569 AAATAAATTA
*
37049579 GGTTAGGG-TTTTAATTAAATTAGGGTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
37049607 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
37049636 GGTTAGGGTTTTTAAATAAATTAGGTTAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37049665 GGTTAGGGTTTTTAATTAAATTAGGGTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
37049694 GGTTAAGGTTTTTAATTAAATTAGGTTAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37049723 TGTTAGGG-TTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
37049751 GGTTAGGGTTTTTAAATAAATTAGGTTAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
37049780 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
* * *
37049809 GGTTAGGGTTTTTAAATAAATTAGGATAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37049838 GGTTAGGGTTTTTAATTAAATTAGGGTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37049867 GGTTAGGGTTTTTAATTAAATTAGGTTAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
37049896 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
37049925 GGTTAGGG-TTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37049953 GGTTAGGGTTTTTAATTAAATTAGGTTAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
37049982 GGTTAGGGTTTTTAATTAAATCAGGTTAA
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
37050011 GGTTAGGGT
1 GGTTAGGGT
37050020 ATGAAATAAA
Statistics
Matches: 382, Mismatches: 28, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
28 62 0.16
29 320 0.84
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (29 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:37049668 original size:23 final size:23
Alignment explanation
Indices: 37049523--37049668 Score: 123
Period size: 23 Copynumber: 5.9 Consensus size: 23
37049513 TAAATTTATC
*
37049523 AAATAAATTAGGTTAGGGTTTTT
1 AAATAAATTAGGTTAAGGTTTTT
*
37049546 AAATAAATTAGGTTAGGGTTTTT
1 AAATAAATTAGGTTAAGGTTTTT
*
37049569 AAATAAATTAGGTT-AGGGTTTT
1 AAATAAATTAGGTTAAGGTTTTT
* *
37049591 AATTAAATTAGGGTAGGGTTAGGGTTTTT
1 AAATAAA-T----TA-GGTTAAGGTTTTT
*
37049620 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AAATAAATTAGGTTA-----A-GGTTTTT
37049649 AAATAAATTAGGTTAAGGTT
1 AAATAAATTAGGTTAAGGTT
37049669 AGGGTTTTTA
Statistics
Matches: 103, Mismatches: 7, Indels: 26
0.76 0.05 0.19
Matches are distributed among these distances:
22 12 0.12
23 47 0.46
24 3 0.03
27 2 0.02
28 5 0.05
29 34 0.33
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.42
Consensus pattern (23 bp):
AAATAAATTAGGTTAAGGTTTTT
Found at i:37049744 original size:144 final size:144
Alignment explanation
Indices: 37049578--37050019 Score: 733
Period size: 144 Copynumber: 3.1 Consensus size: 144
37049568 TAAATAAATT
*
37049578 AGGTTAGGGTTTTAATTAAATTAGGGTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG
1 AGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG
* * * * *
37049643 GTTTTTAAATAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGGTAGGGTTAAGGTTTTTA
66 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGATAAGGTTAGGGTTTTTA
37049708 ATTAAATTAGGTTA
131 ATTAAATTAGGTTA
* * *
37049722 ATGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAAATAAATTAGGTTAAGGTTAGG
1 AGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG
*
37049787 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAAATAAATTAGGATAAGGTTAGGGTTTTTA
66 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGATAAGGTTAGGGTTTTTA
*
37049852 ATTAAATTAGGGTA
131 ATTAAATTAGGTTA
* *
37049866 GGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
1 AGGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
*
37049931 GG-TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTT
65 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGATAAGGTTAGGGTTTTT
*
37049995 AATTAAATCAGGTTA
130 AATTAAATTAGGTTA
37050010 AGGTTAGGGT
1 AGGTTAGGGT
37050020 ATGAAATAAA
Statistics
Matches: 276, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
143 1 0.00
144 221 0.80
145 54 0.20
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (144 bp):
AGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG
GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGATAAGGTTAGGGTTTTTA
ATTAAATTAGGTTA
Found at i:37050053 original size:26 final size:25
Alignment explanation
Indices: 37050023--37050080 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
37050013 TTAGGGTATG
37050023 AAATAAA-TTACGATTTTTATTACATC
1 AAATAAACTT-CGA-TTTTATTACATC
* *
37050049 AAATAGAACTTCTATTTTATTATATC
1 AAATA-AACTTCGATTTTATTACATC
37050075 AAATAA
1 AAATAA
37050081 TATCAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.75
27 4 0.14
28 2 0.07
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.41
Consensus pattern (25 bp):
AAATAAACTTCGATTTTATTACATC
Found at i:37052370 original size:10 final size:10
Alignment explanation
Indices: 37052349--37052383 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
37052339 GCCATTGATG
37052349 AAAATATAAA
1 AAAATATAAA
* *
37052359 AAATTTTAAA
1 AAAATATAAA
37052369 AAAATATAAA
1 AAAATATAAA
37052379 AAAAT
1 AAAAT
37052384 TTGAAATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAATATAAA
Found at i:37052462 original size:22 final size:21
Alignment explanation
Indices: 37052437--37052487 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
37052427 TAATATGGAT
* *
37052437 TTGAGAGATTTTTGGAATGAAA
1 TTGAGAGA-TTTGGGAAGGAAA
37052459 TTGAGAGGATTTGGGAAGGAAA
1 TTGAGA-GATTTGGGAAGGAAA
37052481 TTGAGAG
1 TTGAGAG
37052488 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.88
23 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (21 bp):
TTGAGAGATTTGGGAAGGAAA
Found at i:37052504 original size:52 final size:52
Alignment explanation
Indices: 37052440--37052538 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
37052430 TATGGATTTG
* *
37052440 AGAGATTTTTGGAATGAAATTGAGAGGATTTGGGAAGGAAATTGAGAGTTTA
1 AGAGAATTTTGGAAGGAAATTGAGAGGATTTGGGAAGGAAATTGAGAGTTTA
*
37052492 AGAGAATTTTGGAAGGAAATTGAGAGGATTTTGGAAGGAAATTGAGA
1 AGAGAATTTTGGAAGGAAATTGAGAGGATTTGGGAAGGAAATTGAGA
37052539 TAGGATTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.28
Consensus pattern (52 bp):
AGAGAATTTTGGAAGGAAATTGAGAGGATTTGGGAAGGAAATTGAGAGTTTA
Found at i:37052522 original size:22 final size:22
Alignment explanation
Indices: 37052492--37052538 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
37052482 TGAGAGTTTA
37052492 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
*
37052514 AGAGGATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
37052536 AGA
1 AGA
37052539 TAGGATTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (22 bp):
AGAGAATTTTGGAAGGAAATTG
Found at i:37058204 original size:14 final size:14
Alignment explanation
Indices: 37058185--37058213 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37058175 GCACAATATC
37058185 TAGTGACACTATTA
1 TAGTGACACTATTA
37058199 TAGTGACACTATTA
1 TAGTGACACTATTA
37058213 T
1 T
37058214 GGCTATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (14 bp):
TAGTGACACTATTA
Found at i:37061040 original size:22 final size:21
Alignment explanation
Indices: 37061015--37061058 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
37061005 TTGTTAATAA
* *
37061015 TTAAGTGACATAACTTTTGAAT
1 TTAAGAGAAATAACTTTT-AAT
37061037 TTAAGAGAAATAACTTTTAAT
1 TTAAGAGAAATAACTTTTAAT
37061058 T
1 T
37061059 ATTTATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (21 bp):
TTAAGAGAAATAACTTTTAAT
Found at i:37063065 original size:40 final size:41
Alignment explanation
Indices: 37062999--37063193 Score: 279
Period size: 41 Copynumber: 4.8 Consensus size: 41
37062989 GACCTTTTGG
* * *
37062999 GGCTTTTAGCGGCGTTTTTGAAAAAGCACCACTAATACTCA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* *
37063040 GAGC-TTTAGCGGC-ATTTTGAGAAAGCGCCGCTAATGCTCA
1 G-GCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
*
37063080 GGCTTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
*
37063121 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTTGA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC-TCA
*
37063163 GGC-TTTAGTGGCGTTTTTGAAAAAGCGCCGC
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGC
37063194 AAAAACATTT
Statistics
Matches: 141, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 2 0.01
40 32 0.23
41 100 0.71
42 7 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (41 bp):
GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
Found at i:37063094 original size:81 final size:83
Alignment explanation
Indices: 37062999--37063188 Score: 271
Period size: 81 Copynumber: 2.3 Consensus size: 83
37062989 GACCTTTTGG
*
37062999 GGCTTTTAGCGGCGTTTTTGAAAAAGCACCACTAATACTCAGAGC-TTTAGCGGC-ATTTTGAGA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCACCACTAATACTCAG-GCTTTTAGCGGCGATTTTGAAA
37063062 AAGCGCCGCTAATGC-TCA
65 AAGCGCCGCTAATGCTTCA
* * * * *
37063080 GGCTTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCTTTTAGCGGCGTTTTTGAAAA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCACCACTAATACTCAGGCTTTTAGCGGCGATTTTGAAAA
*
37063145 AGCGCCGCTAATGCTTGA
66 AGCGCCGCTAATGCTTCA
*
37063163 GGC-TTTAGTGGCGTTTTTGAAAAAGC
1 GGCTTTTAGCGGCGTTTTTGAAAAAGC
37063189 GCCGCAAAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
80 2 0.02
81 47 0.48
82 43 0.44
83 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (83 bp):
GGCTTTTAGCGGCGTTTTTGAAAAAGCACCACTAATACTCAGGCTTTTAGCGGCGATTTTGAAAA
AGCGCCGCTAATGCTTCA
Found at i:37068382 original size:43 final size:43
Alignment explanation
Indices: 37068167--37068374 Score: 231
Period size: 43 Copynumber: 4.9 Consensus size: 43
37068157 AGATTATGTT
* *
37068167 TTTAGCGGCGTTTTTGGAAAAAGCACCGCTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCGTGGTC
* * * *
37068210 TTTAGCGGTGTTTGTGGGAAAAGCGCCGTTAAAGGTAGTGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCGTGGTC
* *
37068253 TTTAGCGGCGTTTGTGTAAAAAGCGCCGCTAAATGTCGTGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCGTGGTC
* ** * * *
37068296 TTTAGCGGCATTTGT-GAAAAAGCATCACTAAAGATCGCT-GTT
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCG-TGGTC
* * * *
37068338 TTTAGCGGCGATTGTGGAAAAAGTGTCGTTAAAGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTC
37068375 AGGGTTTTCA
Statistics
Matches: 136, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
42 31 0.23
43 105 0.77
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCGTGGTC
Found at i:37068556 original size:22 final size:22
Alignment explanation
Indices: 37068528--37068570 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
37068518 TAGCGGCGCT
*
37068528 AAAAAGCGTCGCTAAAGGCCTA
1 AAAAAGCGTCGCTAAAAGCCTA
37068550 AAAAAGCGTCGCTAAAAGCCT
1 AAAAAGCGTCGCTAAAAGCCT
37068571 GTTTTGGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.14
Consensus pattern (22 bp):
AAAAAGCGTCGCTAAAAGCCTA
Found at i:37069230 original size:20 final size:20
Alignment explanation
Indices: 37069179--37069230 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 20
37069169 AAATCATTGC
37069179 AATATATGTAAAAATAATTT
1 AATATATGTAAAAATAATTT
* *
37069199 AA-A-ATATAAAAAT-TTATT
1 AATATATGTAAAAATAAT-TT
37069217 AATATATGTAAAAA
1 AATATATGTAAAAA
37069231 AAACTTTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 1 0.04
18 13 0.50
19 2 0.08
20 10 0.38
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
AATATATGTAAAAATAATTT
Found at i:37069359 original size:21 final size:20
Alignment explanation
Indices: 37069320--37069359 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37069310 AATATTTTCC
*
37069320 AGTAAATCATTTTACAAAAA
1 AGTAAAACATTTTACAAAAA
*
37069340 AGTAAAACATTTTTCAAAAA
1 AGTAAAACATTTTACAAAAA
37069360 TTATTTTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (20 bp):
AGTAAAACATTTTACAAAAA
Found at i:37076790 original size:16 final size:15
Alignment explanation
Indices: 37076763--37076796 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
37076753 ATAACTAGTA
*
37076763 TATAATTATATTTAT
1 TATAATTATATTAAT
37076778 TATAATATATATTAAT
1 TATAAT-TATATTAAT
37076794 TAT
1 TAT
37076797 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:37078376 original size:3 final size:3
Alignment explanation
Indices: 37078368--37078394 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
37078358 TGAGGATCCT
37078368 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
37078395 TATCCCACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:37090216 original size:51 final size:51
Alignment explanation
Indices: 37090139--37090401 Score: 345
Period size: 51 Copynumber: 5.2 Consensus size: 51
37090129 CTGATCAGTA
*
37090139 ACAAGTGATAAGT-AGTAGCTTCAGCTACACTTATCTGATC-GATGACAAATG
1 ACAAGTGATAAGTGA-TAGCTTCAGCTACACTTATCTGATCAG-TGACAAGTG
* * *
37090190 GCAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATTAGTGGCAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTG
* *
37090241 ACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTG
* * *
37090292 ACAAGTGATAAGTTG-TAGCTTTAGCTACACCTATCTGATCAGGGACAAGTG
1 ACAAGTGATAAG-TGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTG
* * * *
37090343 GCAAGTGATAAGTGGTAGCTT-AGCTACAATTATCTGATCAGGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTG
*
37090393 ATAAGTGAT
1 ACAAGTGAT
37090402 CATACGTAAG
Statistics
Matches: 192, Mismatches: 16, Indels: 9
0.88 0.07 0.04
Matches are distributed among these distances:
50 36 0.19
51 152 0.79
52 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTG
Found at i:37105998 original size:17 final size:16
Alignment explanation
Indices: 37105976--37106009 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
37105966 GGGGATGGCG
37105976 TTTGTTTGATGTTTATT
1 TTTGTTTGATG-TTATT
*
37105993 TTTGTTTGTTGTTATT
1 TTTGTTTGATGTTATT
37106009 T
1 T
37106010 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.09, C:0.00, G:0.18, T:0.74
Consensus pattern (16 bp):
TTTGTTTGATGTTATT
Found at i:37113784 original size:46 final size:46
Alignment explanation
Indices: 37113710--37114101 Score: 619
Period size: 46 Copynumber: 8.6 Consensus size: 46
37113700 TTTGAGTACT
37113710 TCTGATC-AGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* * *
37113755 TCTAATCAAGTGACAATGTGATAAGTGTTAGCTTTAGCTACAGTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37113801 TCTGATCAAGTGACAAAGTGATAAGTATTAGCTCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37113847 TCTGATCAAGTGACAAATTGATAAGTGTTAGCGTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
*
37113893 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37113939 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* * *
37113985 TTTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37114031 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
*
37114077 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
37114102 ATCATACGTA
Statistics
Matches: 326, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
44 12 0.04
45 11 0.03
46 303 0.93
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
Found at i:37115438 original size:47 final size:48
Alignment explanation
Indices: 37115362--37115551 Score: 222
Period size: 49 Copynumber: 3.9 Consensus size: 48
37115352 CATGTGAAAA
* * *
37115362 TATGATTATGTGATCTCCGTGTAAGACCATATCTGGGATATGGCATCA-T
1 TATGA-TATGTGAT-TCTGTGTAAGACCATAGCTGGGCTATGGCATCAGT
*
37115411 TATGATATGTGATTCTGTGTAAAACCATAGCTGGGCTATGGCATCAGT
1 TATGATATGTGATTCTGTGTAAGACCATAGCTGGGCTATGGCATCAGT
* *
37115459 AAGTGATATGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCAGT
1 TA-TGATATGTGATTCTGTGTAAGACCATAGCTGGGCTATGGCATCAGT
* * * * *
37115508 ATGTGATATGTGATTAC-ATGTAAGATCATAGTTGGACTATGGCA
1 -TATGATATGTGATT-CTGTGTAAGACCATAGCTGGGCTATGGCA
37115552 ATGTGAAAAC
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
47 29 0.24
48 10 0.08
49 83 0.67
50 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (48 bp):
TATGATATGTGATTCTGTGTAAGACCATAGCTGGGCTATGGCATCAGT
Found at i:37119467 original size:46 final size:46
Alignment explanation
Indices: 37119399--37119928 Score: 859
Period size: 46 Copynumber: 11.6 Consensus size: 46
37119389 TTTGAGTAGT
*
37119399 TCTGATC-AGTGACGAAGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119444 TTTGATCAAGTGACAATGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119490 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCATTAGGTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
*
37119536 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCATTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119582 TCTTATCAAGTGACAAAGTGATAAGTGTTAGCTCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
*
37119628 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119674 TCTGATCAGGTGACAAAGTGATAAGTGTTAGCGTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119720 TCTAATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119766 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119812 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
* *
37119858 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
*
37119904 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
37119929 ATCATACGTA
Statistics
Matches: 461, Mismatches: 23, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
44 12 0.03
45 11 0.02
46 438 0.95
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
Found at i:37139450 original size:26 final size:24
Alignment explanation
Indices: 37139412--37139460 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
37139402 ACTAAATAAA
*
37139412 TTAATAATAAAATAATAAAATATTAT
1 TTAAAAATAAAAT--TAAAATATTAT
*
37139438 TTAAAAATCAAATTAAAATATTA
1 TTAAAAATAAAATTAAAATATTA
37139461 ATAAACTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
26 11 0.52
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
TTAAAAATAAAATTAAAATATTAT
Found at i:37150522 original size:17 final size:17
Alignment explanation
Indices: 37150488--37150557 Score: 51
Period size: 16 Copynumber: 4.2 Consensus size: 17
37150478 TTTAGGGGAA
*
37150488 AAATAAAAAGTTT-TGGG
1 AAAT-AAAAGTTTGAGGG
37150505 AAATAAAAGTTTGAGGG
1 AAATAAAAGTTTGAGGG
37150522 AAAATAAATAG---GAGGG
1 -AAATAAA-AGTTTGAGGG
*
37150538 -AATAAAATTTTGGAGGG
1 AAATAAAAGTTT-GAGGG
37150555 AAA
1 AAA
37150558 ATATTAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
13 1 0.02
14 6 0.14
16 13 0.30
17 12 0.28
18 9 0.21
19 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (17 bp):
AAATAAAAGTTTGAGGG
Found at i:37150867 original size:9 final size:9
Alignment explanation
Indices: 37150853--37150889 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
37150843 TATAGTTTGA
37150853 TATTCGAAT
1 TATTCGAAT
37150862 TATTCGAAT
1 TATTCGAAT
*
37150871 TATTCGAGT
1 TATTCGAAT
37150880 TATTCGAAT
1 TATTCGAAT
37150889 T
1 T
37150890 CGAAAACTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37152248 original size:29 final size:29
Alignment explanation
Indices: 37152214--37152269 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
37152204 TTTGATTATT
* * *
37152214 TTTAATAGTATAGGGGTTAAATTGATCCA
1 TTTAATAGTAAAGAGATTAAATTGATCCA
37152243 TTTAATAGTAAAGAGATTAAATTGATC
1 TTTAATAGTAAAGAGATTAAATTGATC
37152270 ATGTCCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.38
Consensus pattern (29 bp):
TTTAATAGTAAAGAGATTAAATTGATCCA
Found at i:37153242 original size:14 final size:14
Alignment explanation
Indices: 37153225--37153251 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37153215 AAAATACCAA
37153225 AATTTAAATAAATC
1 AATTTAAATAAATC
37153239 AATTTAAATAAAT
1 AATTTAAATAAAT
37153252 TATGACATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (14 bp):
AATTTAAATAAATC
Found at i:37154449 original size:20 final size:21
Alignment explanation
Indices: 37154412--37154457 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
37154402 AAGGAGAACA
*
37154412 AAATTGAATTGAAAAAGAAAC
1 AAATTAAATTGAAAAAGAAAC
37154433 AAATTAAATTG-AAAAGAAAC
1 AAATTAAATTGAAAAAGAAAC
37154453 AAATT
1 AAATT
37154458 GCACAAGCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.63, C:0.04, G:0.11, T:0.22
Consensus pattern (21 bp):
AAATTAAATTGAAAAAGAAAC
Found at i:37154535 original size:5 final size:5
Alignment explanation
Indices: 37154525--37154553 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
37154515 GGTTAAGGGA
37154525 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
37154554 ACAATCTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:37156414 original size:24 final size:24
Alignment explanation
Indices: 37156387--37156438 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37156377 TTAGTAAGTC
*
37156387 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37156411 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37156435 AAAT
1 AAAT
37156439 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37158383 original size:24 final size:24
Alignment explanation
Indices: 37158356--37158407 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37158346 TTAGTAAGTC
*
37158356 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37158380 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37158404 AAAT
1 AAAT
37158408 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37164076 original size:29 final size:27
Alignment explanation
Indices: 37164044--37164120 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 27
37164034 GCTCAAGTAC
37164044 ATTTTCTTTTGTTTGCATGTTT-GTTTCTT
1 ATTTTCTTTTGTTT--ATGTTTGGTTT-TT
* *
37164073 ATTTTCAGTTTGGTTTATTTTTGGTTTTT
1 ATTTTC--TTTTGTTTATGTTTGGTTTTT
*
37164102 ATTTTCTTTTGCTTA-GTTT
1 ATTTTCTTTTGTTTATGTTT
37164121 ACTTAAGGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
26 3 0.08
27 7 0.17
29 19 0.47
30 4 0.10
31 7 0.17
ACGTcount: A:0.09, C:0.08, G:0.14, T:0.69
Consensus pattern (27 bp):
ATTTTCTTTTGTTTATGTTTGGTTTTT
Found at i:37168244 original size:43 final size:41
Alignment explanation
Indices: 37168192--37168299 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 41
37168182 ACTGAGAAGC
37168192 ACTT-TCACTTAAGCTCGCATGAGGAGCTCCGCTGATACACA
1 ACTTATCACTTAAGCTC-CATGAGGAGCTCCGCTGATACACA
** *
37168233 ACTTCATCACTTAAGCT-CATGTAGAGAGCTTTGCTGATACATA
1 ACTT-ATCACTTAAGCTCCATG-AG-GAGCTCCGCTGATACACA
37168276 ACTTATC-CTT-AGCTCACA-GAGGAG
1 ACTTATCACTTAAGCTC-CATGAGGAG
37168300 ATTTACTGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
39 3 0.05
40 6 0.10
41 12 0.21
42 7 0.12
43 30 0.52
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (41 bp):
ACTTATCACTTAAGCTCCATGAGGAGCTCCGCTGATACACA
Found at i:37173824 original size:42 final size:42
Alignment explanation
Indices: 37173733--37173817 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
37173723 TAAACAGTAG
*
37173733 CAATCCATAACATGCTTCTATACAAGCAATTACATGTTAAACA
1 CAAT-CATAACATGCTTCTATACAAGCAATTACATGTCAAACA
*
37173776 CAATCATAACATGCTTCTATACAAGCAATTACATGTCGAACA
1 CAATCATAACATGCTTCTATACAAGCAATTACATGTCAAACA
37173818 TGATCATTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 36 0.90
43 4 0.10
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (42 bp):
CAATCATAACATGCTTCTATACAAGCAATTACATGTCAAACA
Found at i:37203545 original size:22 final size:24
Alignment explanation
Indices: 37203493--37203546 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
37203483 ATTCAAAAAC
37203493 TTAAATTATTGTTATTAAATATGCT
1 TTAAATTATTGTTATT-AATATGCT
*
37203518 TGAAATTATTG-TATT-ATAT-CTT
1 TTAAATTATTGTTATTAATATGC-T
37203540 TTAAATT
1 TTAAATT
37203547 GAATTCATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 1 0.04
22 11 0.42
24 4 0.15
25 10 0.38
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (24 bp):
TTAAATTATTGTTATTAATATGCT
Found at i:37209551 original size:17 final size:18
Alignment explanation
Indices: 37209529--37209562 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37209519 TTTGGGCCGA
37209529 GTGGGCC-ACACAGGCAT
1 GTGGGCCTACACAGGCAT
*
37209546 GTGGGCCTACACGGGCA
1 GTGGGCCTACACAGGCA
37209563 GACCACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.29, G:0.38, T:0.12
Consensus pattern (18 bp):
GTGGGCCTACACAGGCAT
Found at i:37215943 original size:22 final size:22
Alignment explanation
Indices: 37215918--37215969 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
37215908 ATCTTTAAAA
*
37215918 TAATTAAAATT-TATAAAATAAT
1 TAATAAAAATTCTA-AAAATAAT
37215940 TAATAAAAATTCTAAAAAT-AT
1 TAATAAAAATTCTAAAAATAAT
37215961 T-ATAAAAAT
1 TAATAAAAAT
37215970 ATACAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 8 0.29
21 3 0.11
22 15 0.54
23 2 0.07
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATAAAAATTCTAAAAATAAT
Found at i:37215955 original size:21 final size:20
Alignment explanation
Indices: 37215922--37216019 Score: 55
Period size: 21 Copynumber: 4.9 Consensus size: 20
37215912 TTAAAATAAT
*
37215922 TAAAATTTAT-AAAATAATTAA
1 TAAAAATTATAAAAAT-ATT-A
*
37215943 TAAAAATTCTAAAAATATTA
1 TAAAAATTATAAAAATATTA
*
37215963 TAAAAA-TAT-ACAA-ATTA
1 TAAAAATTATAAAAATATTA
*
37215980 TAAACAATT-TCCAAAATAATTA
1 TAAA-AATTAT-AAAAAT-ATTA
*
37216002 -AAAAATAATTAAAAATAT
1 TAAAAATTA-TAAAAATAT
37216020 AAAAATATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
17 8 0.13
18 6 0.10
19 3 0.05
20 15 0.25
21 19 0.31
22 10 0.16
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAATTATAAAAATATTA
Found at i:37216016 original size:12 final size:11
Alignment explanation
Indices: 37215992--37216021 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
37215982 AACAATTTCC
37215992 AAAATAATTAA
1 AAAATAATTAA
37216003 AAAATAATTAA
1 AAAATAATTAA
37216014 AAATATAA
1 AAA-ATAA
37216022 AAATATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAAATAATTAA
Found at i:37218843 original size:3 final size:3
Alignment explanation
Indices: 37218835--37218863 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
37218825 TTGAGGTCTG
37218835 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
37218864 TGTTTTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:37219602 original size:44 final size:44
Alignment explanation
Indices: 37219552--37219637 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
37219542 TAATGCAATA
*
37219552 TTTGGTAGTACAAAATTAATTGAAACCTCTAAAAGAGCTAATTG
1 TTTGGTAGTACAAAATTAATTGAAACCTCCAAAAGAGCTAATTG
* *
37219596 TTTGGTAGTACAAAATTAGTTGAAAGCTCCAAAAGAGCTAAT
1 TTTGGTAGTACAAAATTAATTGAAACCTCCAAAAGAGCTAAT
37219638 ATAGCAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (44 bp):
TTTGGTAGTACAAAATTAATTGAAACCTCCAAAAGAGCTAATTG
Found at i:37220701 original size:20 final size:19
Alignment explanation
Indices: 37220676--37220721 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
37220666 AAATAATTTG
37220676 AAAATAATTT-TCAAAAATT
1 AAAATAATTTAT-AAAAATT
37220695 CAAAAT-ATTTATAAAAATT
1 -AAAATAATTTATAAAAATT
37220714 AAAA-AATT
1 AAAATAATT
37220722 ATATTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 7 0.29
19 11 0.46
20 6 0.25
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATAATTTATAAAAATT
Found at i:37220732 original size:23 final size:22
Alignment explanation
Indices: 37220676--37220759 Score: 68
Period size: 23 Copynumber: 3.9 Consensus size: 22
37220666 AAATAATTTG
*
37220676 AAAATA-ATTTTCAAAAATT--
1 AAAATATATTTTTAAAAATTAA
* *
37220695 CAAA-ATATTTATAAAAATTAA
1 AAAATATATTTTTAAAAATTAA
* *
37220716 AAAATTATATTTTTAAAAAATAT
1 AAAA-TATATTTTTAAAAATTAA
*
37220739 ATAATATATTTTTTAAAAATT
1 AAAATATA-TTTTTAAAAATT
37220760 CTAAAGAATA
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
18 1 0.02
19 14 0.28
21 3 0.06
22 4 0.08
23 28 0.56
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATATATTTTTAAAAATTAA
Found at i:37227061 original size:26 final size:25
Alignment explanation
Indices: 37227028--37227086 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
37227018 ATTTTTCTCA
* * *
37227028 AAATTTTACCAAGGGCAAAATCGTC
1 AAATTTTACAAAGGACAAAATCATC
*
37227053 AAATGTTTACAAAGGATAAAATCATC
1 AAAT-TTTACAAAGGACAAAATCATC
37227079 AAAATTTT
1 -AAATTTT
37227087 GTTGAGGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 4 0.14
26 20 0.71
27 4 0.14
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.29
Consensus pattern (25 bp):
AAATTTTACAAAGGACAAAATCATC
Found at i:37234101 original size:17 final size:18
Alignment explanation
Indices: 37234058--37234102 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
37234048 AAAAGTTAGA
37234058 GTTCT-TTTATTTCTTCT
1 GTTCTCTTTATTTCTTCT
* *
37234075 ATT-TCCTTATTTCTT-T
1 GTTCTCTTTATTTCTTCT
37234091 GTTCTCTTTATT
1 GTTCTCTTTATT
37234103 ATTTATTTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.09, C:0.18, G:0.04, T:0.69
Consensus pattern (18 bp):
GTTCTCTTTATTTCTTCT
Found at i:37235319 original size:14 final size:14
Alignment explanation
Indices: 37235302--37235351 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
37235292 TGAAATTTGG
37235302 TATTCACATTATAA
1 TATTCACATTATAA
37235316 TATTCACATTGAT--
1 TATTCACATT-ATAA
**
37235329 T-TAGACATTATAA
1 TATTCACATTATAA
37235342 TATTCACATT
1 TATTCACATT
37235352 GATTTAGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
11 2 0.07
12 6 0.21
13 2 0.07
14 16 0.57
15 2 0.07
ACGTcount: A:0.38, C:0.14, G:0.04, T:0.44
Consensus pattern (14 bp):
TATTCACATTATAA
Found at i:37235336 original size:26 final size:26
Alignment explanation
Indices: 37235307--37235363 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
37235297 TTTGGTATTC
37235307 ACATTATAATATTCACATTGATTTAG
1 ACATTATAATATTCACATTGATTTAG
37235333 ACATTATAATATTCACATTGATTTAG
1 ACATTATAATATTCACATTGATTTAG
37235359 ACATT
1 ACATT
37235364 TCCAGTAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (26 bp):
ACATTATAATATTCACATTGATTTAG
Found at i:37262774 original size:24 final size:24
Alignment explanation
Indices: 37262747--37262798 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
37262737 TGAGGAGGAG
37262747 GATACATGAGAGGTGGAGATGGGT
1 GATACATGAGAGGTGGAGATGGGT
*
37262771 GATACATGAGAGGTGGAGGTGGGT
1 GATACATGAGAGGTGGAGATGGGT
37262795 GATA
1 GATA
37262799 AATTGGTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.04, G:0.46, T:0.21
Consensus pattern (24 bp):
GATACATGAGAGGTGGAGATGGGT
Found at i:37268489 original size:45 final size:45
Alignment explanation
Indices: 37268440--37268733 Score: 282
Period size: 45 Copynumber: 6.7 Consensus size: 45
37268430 TGTTCCACAA
* *
37268440 CAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTG
* * * *
37268485 CAACTTCAGGAAGATAAGACTT-C-A-CTTCAATCCGTTCCACTG
1 CAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTG
* * * *
37268527 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCGCTG
1 CAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTG
* * * * *
37268572 CAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCTGGTCCACTG
1 CAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTG
* * *
37268617 CAACTTCAGGGAGATAAGACTT-C-A-CTTCAATCCGTTCCACTG
1 CAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTG
* * * *
37268659 CAACTTCAAGGAGATATGATTAT--TGA-CTTTAATTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATT-TGCT-ATCTTCAATCTGCTCCACTG
* * *
37268703 CAAGTTCAGGGAGATAAGATTCGCCATCTTC
1 CAACTTCAGGGAGATAAGATTTGCTATCTTC
37268734 TTCAATTCAT
Statistics
Matches: 202, Mismatches: 38, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
42 68 0.34
43 3 0.01
44 37 0.18
45 94 0.47
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (45 bp):
CAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTG
Found at i:37268533 original size:87 final size:86
Alignment explanation
Indices: 37268430--37268733 Score: 308
Period size: 87 Copynumber: 3.5 Consensus size: 86
37268420 AGCTTTAATT
** * *
37268430 TGTTCCACAACAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
1 TGTTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCTCCACTGCAACTTCAGG
37268495 AAGATAAGACTTCACTTCAATC
66 -AGATAAGACTTCACTTCAATC
* * *
37268517 CGTTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCGCTGCAACTTCAGG
1 TGTTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCTCCACTGCAACTTCA-G
* * *
37268582 GGGATAAGACTTGCTTTCTTCAGTC
65 GAGATAAGACTT-C--ACTTCAATC
* * * * *
37268607 TGGTCCACTGCAACTTCAGGGAGATAAGACTT--CA-CTTCAATCCGTTCCACTGCAACTTCAAG
1 TGTTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCTCCACTGCAACTTC-AG
* * * * *
37268669 GAGATATGATTATTGACTTTAATT
65 GAGATAAGA--CTTCACTTCAATC
* * *
37268693 TGCTCCACTGCAAGTTCAGGGAGATAAGATTCGCCATCTTC
1 TGTTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
37268734 TTCAATTCAT
Statistics
Matches: 177, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
86 33 0.19
87 94 0.53
88 8 0.05
89 6 0.03
90 36 0.20
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (86 bp):
TGTTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCTCCACTGCAACTTCAGG
AGATAAGACTTCACTTCAATC
Found at i:37268596 original size:132 final size:132
Alignment explanation
Indices: 37268440--37268679 Score: 408
Period size: 132 Copynumber: 1.8 Consensus size: 132
37268430 TGTTCCACAA
*
37268440 CAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGAC
1 CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGAC
*
37268505 TTCACTTCAATCCGTTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCGC
66 TTCACTTCAATCCGTTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCCCGC
37268570 TG
131 TG
** * * *
37268572 CAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCTGGTCCACTGCAACTTCAGGGAGATAAGAC
1 CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGAC
*
37268637 TTCACTTCAATCCGTTCCACTGCAACTTCAAGGAGATATGATT
66 TTCACTTCAATCCGTTCCACTGCAACTTCAAGGAGATAAGATT
37268680 ATTGACTTTA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 100 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (132 bp):
CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGAC
TTCACTTCAATCCGTTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCCCGC
TG
Found at i:37269942 original size:9 final size:9
Alignment explanation
Indices: 37269930--37269954 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37269920 TTTTCTTTTT
37269930 TTTTTTTGA
1 TTTTTTTGA
37269939 TTTTTTTGA
1 TTTTTTTGA
37269948 TTTTTTT
1 TTTTTTT
37269955 CTCAAGGCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:37273271 original size:19 final size:20
Alignment explanation
Indices: 37273247--37273291 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
37273237 TGTGAAAATC
*
37273247 TAATGCATATG-ATGCAATG
1 TAATGCAGATGCATGCAATG
*
37273266 TAATGCAGATGCATGGAATG
1 TAATGCAGATGCATGCAATG
37273286 -AATGCA
1 TAATGCA
37273292 AAAAGAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGCATGCAATG
Found at i:37275279 original size:11 final size:11
Alignment explanation
Indices: 37275249--37275294 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
37275239 CTTAATTATT
37275249 CTCTCAATTTC
1 CTCTCAATTTC
37275260 CTC-CTAATTTC
1 CTCTC-AATTTC
*
37275271 CTCTCAATTTG
1 CTCTCAATTTC
*
37275282 TTCTCAATTTC
1 CTCTCAATTTC
37275293 CT
1 CT
37275295 TCCAAATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 1 0.03
11 27 0.93
12 1 0.03
ACGTcount: A:0.17, C:0.33, G:0.02, T:0.48
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:37275331 original size:51 final size:50
Alignment explanation
Indices: 37275272--37275370 Score: 146
Period size: 50 Copynumber: 2.0 Consensus size: 50
37275262 CCTAATTTCC
*
37275272 TCTCAATTTGTTCTCAATTTC-CTTCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTGCTCTCAATTTCTC-T-CAAATTTCTCTCAAATCCATATTTAA
* *
37275323 TCTCAATTTGCTCTCAATTTCTCTCAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAATTTCTCTCAAATTTCTCTCAAATCCATATTT
37275371 TTAATTATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
50 22 0.50
51 21 0.48
52 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.02, T:0.46
Consensus pattern (50 bp):
TCTCAATTTGCTCTCAATTTCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:37275352 original size:11 final size:10
Alignment explanation
Indices: 37275247--37275357 Score: 54
Period size: 11 Copynumber: 10.6 Consensus size: 10
37275237 TTCTTAATTA
37275247 TTCTCTCAAT
1 TTCTCTCAAT
37275257 TTC-CTCCTAAT
1 TTCTCT-C-AAT
37275268 TTCCTCTCAAT
1 TT-CTCTCAAT
*
37275279 TTGTTCTCAAT
1 TT-CTCTCAAT
37275290 TTC-CTTCCAAAT
1 TTCTC-T-C-AAT
37275302 TTCTCTCAA-
1 TTCTCTCAAT
*
37275311 --ATC-CATAT
1 TTCTCTCA-AT
*
37275319 TTAATCTCAAT
1 TT-CTCTCAAT
37275330 TTGCTCTCAAT
1 TT-CTCTCAAT
37275341 TTCTCTCAAAT
1 TTCTCTC-AAT
37275352 TTCTCT
1 TTCTCT
37275358 TAAATCCCTA
Statistics
Matches: 80, Mismatches: 6, Indels: 29
0.70 0.05 0.25
Matches are distributed among these distances:
6 2 0.03
7 3 0.04
9 3 0.04
10 12 0.15
11 46 0.57
12 11 0.14
13 3 0.04
ACGTcount: A:0.23, C:0.29, G:0.02, T:0.47
Consensus pattern (10 bp):
TTCTCTCAAT
Found at i:37279169 original size:57 final size:59
Alignment explanation
Indices: 37279059--37279200 Score: 202
Period size: 57 Copynumber: 2.4 Consensus size: 59
37279049 TTTGACGGTA
37279059 AAAAGGATCTAGCCCGGACGGGTGATTCTATCCTGATATAGCCCTCCCGAAGAATATGTGTG
1 AAAAGGATCTAGCCCGGACGGGTGATTC-AT-CTGATATAGCCCTCCCGAAGAATATGTG-G
37279121 TAAAA-GATCTAGCCCGGACGGGTGA-TC-T-TGATATAGCCCTCCCGAAGAATATGTGG
1 -AAAAGGATCTAGCCCGGACGGGTGATTCATCTGATATAGCCCTCCCGAAGAATATGTGG
*
37279177 AAAATGGATTTAGCCCGGACGGGT
1 AAAA-GGATCTAGCCCGGACGGGT
37279201 AATCCGAATT
Statistics
Matches: 76, Mismatches: 1, Indels: 10
0.87 0.01 0.11
Matches are distributed among these distances:
55 4 0.05
56 1 0.01
57 44 0.58
59 1 0.01
61 2 0.03
62 20 0.26
63 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (59 bp):
AAAAGGATCTAGCCCGGACGGGTGATTCATCTGATATAGCCCTCCCGAAGAATATGTGG
Found at i:37279438 original size:66 final size:66
Alignment explanation
Indices: 37279327--37279452 Score: 234
Period size: 66 Copynumber: 1.9 Consensus size: 66
37279317 GTTTATATTA
*
37279327 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATAAGGTTTGCGGGAGTGTGCTATCTT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATAAGGTTCGCGGGAGTGTGCTATCTT
37279392 G
66 G
*
37279393 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATGAGGTTCGCGGGAGTGTGCT
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATAAGGTTCGCGGGAGTGTGCT
37279453 CTCTGAAATG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.19, C:0.17, G:0.37, T:0.27
Consensus pattern (66 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGGATAAGGTTCGCGGGAGTGTGCTATCTT
G
Found at i:37280262 original size:18 final size:18
Alignment explanation
Indices: 37280239--37280280 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
37280229 GCCAGGTGCA
* *
37280239 TATCCTAGCCCTTTTATG
1 TATCCTAACCCTTATATG
37280257 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
37280275 TTTCCT
1 TATCCT
37280281 TTTCCGAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.07, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:37281361 original size:37 final size:38
Alignment explanation
Indices: 37281310--37281383 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
37281300 TATAATAAAT
37281310 AAATATTTTTTATTC-TTTAATTTTAAAAT-ATTTTTA
1 AAATATTTTTTATTCTTTTAATTTTAAAATAATTTTTA
* *
37281346 AAATACTTTTTTATTCTTTTTATTTTTAAATAATTTTT
1 AAATA-TTTTTTATTCTTTTAATTTTAAAATAATTTTT
37281384 TTGGTGTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 5 0.15
37 10 0.30
38 12 0.36
39 6 0.18
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (38 bp):
AAATATTTTTTATTCTTTTAATTTTAAAATAATTTTTA
Found at i:37284117 original size:7 final size:7
Alignment explanation
Indices: 37284105--37284137 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
37284095 TAGAAAAAAA
37284105 ATCAAGC
1 ATCAAGC
37284112 ATCAAGC
1 ATCAAGC
37284119 ATCAAGC
1 ATCAAGC
37284126 ATCAAGCC
1 ATCAAG-C
37284134 ATCA
1 ATCA
37284138 GCCCTCAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.80
8 5 0.20
ACGTcount: A:0.42, C:0.30, G:0.12, T:0.15
Consensus pattern (7 bp):
ATCAAGC
Found at i:37285535 original size:17 final size:18
Alignment explanation
Indices: 37285503--37285536 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37285493 TATTTAAGCT
37285503 ATTGATTATATTATTTAG
1 ATTGATTATATTATTTAG
*
37285521 ATTGA-TATTTTATTTA
1 ATTGATTATATTATTTA
37285537 TTATTGATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (18 bp):
ATTGATTATATTATTTAG
Found at i:37285542 original size:18 final size:17
Alignment explanation
Indices: 37285502--37285544 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
37285492 CTATTTAAGC
37285502 TATTGATTATATTATTTA
1 TATTGA-TATATTATTTA
* *
37285520 GATTGATATTTTATTTA
1 TATTGATATATTATTTA
37285537 TTATTGAT
1 -TATTGAT
37285545 TTAGGTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60
Consensus pattern (17 bp):
TATTGATATATTATTTA
Found at i:37292708 original size:12 final size:13
Alignment explanation
Indices: 37292691--37292719 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37292681 CTCATACATG
37292691 AATAAATAAA-GC
1 AATAAATAAATGC
37292703 AATAAATAAATGC
1 AATAAATAAATGC
37292716 AATA
1 AATA
37292720 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:37293294 original size:34 final size:33
Alignment explanation
Indices: 37293231--37293303 Score: 78
Period size: 34 Copynumber: 2.2 Consensus size: 33
37293221 GGAACTGCCA
* *
37293231 CGGTAGGAGCAGGGGTGCGGGGGCAGAGCC-CTCG
1 CGGTAGGACCAGAGGTGCGGGGG-AGAGCCTC-CG
37293265 CGGTATGGACCAGAGGTGC-GGGGAGGAGCCTCCG
1 CGGTA-GGACCAGAGGTGCGGGGGA-GAGCCTCCG
37293299 CGGTA
1 CGGTA
37293304 CGAACCGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
33 1 0.03
34 21 0.62
35 12 0.35
ACGTcount: A:0.16, C:0.23, G:0.49, T:0.11
Consensus pattern (33 bp):
CGGTAGGACCAGAGGTGCGGGGGAGAGCCTCCG
Found at i:37296889 original size:29 final size:30
Alignment explanation
Indices: 37296830--37296887 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37296820 TCCGAGCCTT
*
37296830 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
37296860 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
37296888 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:37297117 original size:13 final size:13
Alignment explanation
Indices: 37297099--37297130 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37297089 TTTCCAGCAA
37297099 TTATGAATTTATT
1 TTATGAATTTATT
37297112 TTATGAATTTATT
1 TTATGAATTTATT
*
37297125 TGATGA
1 TTATGA
37297131 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:37297338 original size:50 final size:50
Alignment explanation
Indices: 37297225--37297466 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
37297215 ATTTGGGTAA
* * *
37297225 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
37297281 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37297331 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37297381 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
37297431 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
37297467 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:37297414 original size:100 final size:103
Alignment explanation
Indices: 37297225--37297474 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
37297215 ATTTGGGTAA
37297225 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
37297290 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
37297331 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
37297393 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
37297431 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
37297475 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:37301131 original size:29 final size:30
Alignment explanation
Indices: 37301072--37301129 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37301062 TCCGAGCCTT
*
37301072 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
37301102 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
37301130 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:37301359 original size:13 final size:13
Alignment explanation
Indices: 37301341--37301372 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37301331 TTTCCAGCAA
37301341 TTATGAATTTATT
1 TTATGAATTTATT
37301354 TTATGAATTTATT
1 TTATGAATTTATT
*
37301367 TGATGA
1 TTATGA
37301373 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:37301580 original size:50 final size:50
Alignment explanation
Indices: 37301467--37301708 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
37301457 ATTTGGGTAA
* * *
37301467 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
37301523 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37301573 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37301623 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
37301673 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
37301709 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:37301656 original size:100 final size:103
Alignment explanation
Indices: 37301467--37301716 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
37301457 ATTTGGGTAA
37301467 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
37301532 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
37301573 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
37301635 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
37301673 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
37301717 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:37306273 original size:16 final size:17
Alignment explanation
Indices: 37306252--37306285 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
37306242 CCATTTACTT
37306252 TCCCC-TAAAATTTTAC
1 TCCCCTTAAAATTTTAC
*
37306268 TCCCCTTAAACTTTTAC
1 TCCCCTTAAAATTTTAC
37306285 T
1 T
37306286 TCTCACCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.41
Consensus pattern (17 bp):
TCCCCTTAAAATTTTAC
Found at i:37310245 original size:41 final size:41
Alignment explanation
Indices: 37310195--37310327 Score: 160
Period size: 41 Copynumber: 3.2 Consensus size: 41
37310185 TTTGTCTAAA
* *
37310195 CGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATTTGAG
1 CGCCACTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAG
* * * * * *
37310236 TGCCACTAATTCTCTGT-TCTTTAGCGGCGTTTTTGTCTAAG
1 CGCCACTAATGCTC-GTATCATTAGTGGCGTTTTTATCTGAG
* *
37310277 CGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAG
1 CGCCACTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAG
37310318 CGCCACTAAT
1 CGCCACTAAT
37310328 TCTCTGTTCT
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
40 2 0.03
41 69 0.95
42 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (41 bp):
CGCCACTAATGCTCGTATCATTAGTGGCGTTTTTATCTGAG
Found at i:37310310 original size:82 final size:82
Alignment explanation
Indices: 37310172--37310367 Score: 322
Period size: 82 Copynumber: 2.4 Consensus size: 82
37310162 TTTTTTAAAC
* * * * *
37310172 CTTTAGCGGTGTTTTTGTCTAAACGCCGCTAATGCTCGTATCATTAGTGGCGTTTTTATTTGAGT
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGC
37310237 GCCACTAATTCTCTGTT
66 GCCACTAATTCTCTGTT
37310254 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGC
1 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGC
37310319 GCCACTAATTCTCTGTT
66 GCCACTAATTCTCTGTT
*
37310336 CTTTAGCGGCATTTTT-TGCTAAGCGCCGCTAA
1 CTTTAGCGGCGTTTTTGT-CTAAGCGCCGCTAA
37310368 AGTTCGTGTT
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
81 1 0.01
82 106 0.99
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (82 bp):
CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGTATCATTAGTGGCATTTTTATCTGAGC
GCCACTAATTCTCTGTT
Found at i:37310347 original size:41 final size:41
Alignment explanation
Indices: 37310215--37310351 Score: 159
Period size: 41 Copynumber: 3.3 Consensus size: 41
37310205 GCTCGTATCA
* * * *
37310215 TTAGTGGCGTTTTTATTTGAGTGCCACTAATTCTCTGTTCT
1 TTAGCGGCATTTTTATCTGAGCGCCACTAATTCTCTGTTCT
* * * * * *
37310256 TTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTC-GTATCA
1 TTAGCGGCATTTTTATCTGAGCGCCACTAATTCTCTGT-TCT
*
37310297 TTAGTGGCATTTTTATCTGAGCGCCACTAATTCTCTGTTCT
1 TTAGCGGCATTTTTATCTGAGCGCCACTAATTCTCTGTTCT
37310338 TTAGCGGCATTTTT
1 TTAGCGGCATTTTT
37310352 TGCTAAGCGC
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 2 0.03
41 74 0.95
42 2 0.03
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.43
Consensus pattern (41 bp):
TTAGCGGCATTTTTATCTGAGCGCCACTAATTCTCTGTTCT
Found at i:37310361 original size:41 final size:41
Alignment explanation
Indices: 37310237--37310367 Score: 151
Period size: 41 Copynumber: 3.2 Consensus size: 41
37310227 TTATTTGAGT
*
37310237 GCCACTAATTCTCTGTTCTTTAGCGGC-GTTTTTGTCTAAGC
1 GCCACTAATTCTCTGTTCTTTAGCGGCATTTTTTG-CTAAGC
* * * * *
37310278 GCCGCTAATGCTC-GTATCATTAGTGGCATTTTTAT-CTGAGC
1 GCCACTAATTCTCTGT-TCTTTAGCGGCATTTTT-TGCTAAGC
37310319 GCCACTAATTCTCTGTTCTTTAGCGGCATTTTTTGCTAAGC
1 GCCACTAATTCTCTGTTCTTTAGCGGCATTTTTTGCTAAGC
*
37310360 GCCGCTAA
1 GCCACTAA
37310368 AGTTCGTGTT
Statistics
Matches: 73, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
40 3 0.04
41 63 0.86
42 6 0.08
43 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (41 bp):
GCCACTAATTCTCTGTTCTTTAGCGGCATTTTTTGCTAAGC
Found at i:37311522 original size:8 final size:10
Alignment explanation
Indices: 37311500--37311536 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
37311490 TATTTTTACT
37311500 TATATATGGA
1 TATATATGGA
*
37311510 TATATATGAA
1 TATATATGGA
37311520 TATATATGGA
1 TATATATGGA
37311530 TATATAT
1 TATATAT
37311537 ATAGTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (10 bp):
TATATATGGA
Found at i:37311645 original size:27 final size:27
Alignment explanation
Indices: 37311604--37311655 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
37311594 AATAAACAAA
* *
37311604 TAAATAAGTTAGTAATTATTTATTTGT
1 TAAATAAATTAGTAATTAATTATTTGT
*
37311631 TAAATAAATTGGTAATTAATTATTT
1 TAAATAAATTAGTAATTAATTATTT
37311656 AAAAGTAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (27 bp):
TAAATAAATTAGTAATTAATTATTTGT
Found at i:37314199 original size:29 final size:29
Alignment explanation
Indices: 37314165--37314235 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
37314155 TACTTCAAAT
37314165 TAATGAATAATTATCGATCTTAACTTACA
1 TAATGAATAATTATCGATCTTAACTTACA
*
37314194 TAATGACTAATTATCGATCTTAACTTACA
1 TAATGAATAATTATCGATCTTAACTTACA
37314223 TAATGAATAATTA
1 TAATGAATAATTA
37314236 AAATTATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (29 bp):
TAATGAATAATTATCGATCTTAACTTACA
Found at i:37314501 original size:9 final size:9
Alignment explanation
Indices: 37314483--37314617 Score: 91
Period size: 9 Copynumber: 15.2 Consensus size: 9
37314473 CTTATATTTA
*
37314483 AACTTTCAT
1 AACTTACAT
37314492 AACTTACAT
1 AACTTACAT
*
37314501 AA-TAACAT
1 AACTTACAT
37314509 ATGGACTTACAT
1 A---ACTTACAT
*
37314521 TA--TACAT
1 AACTTACAT
* *
37314528 AGCATACAT
1 AACTTACAT
37314537 AACTTACAT
1 AACTTACAT
*
37314546 AA--TACAA
1 AACTTACAT
37314553 AACTTACAT
1 AACTTACAT
*
37314562 AACTTAAAT
1 AACTTACAT
* *
37314571 ATCTTACAC
1 AACTTACAT
*
37314580 AACTTACAC
1 AACTTACAT
*
37314589 AACTTAAAT
1 AACTTACAT
* *
37314598 AATTTAAAT
1 AACTTACAT
37314607 AACTTACAT
1 AACTTACAT
37314616 AA
1 AA
37314618 TACATAATAT
Statistics
Matches: 98, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
7 11 0.11
8 6 0.06
9 75 0.77
11 1 0.01
12 5 0.05
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:37314543 original size:25 final size:25
Alignment explanation
Indices: 37314513--37314567 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
37314503 TAACATATGG
* * *
37314513 ACTTACATTATACATAGCATACATA
1 ACTTACATAATACAAAACATACATA
*
37314538 ACTTACATAATACAAAACTTACATA
1 ACTTACATAATACAAAACATACATA
37314563 ACTTA
1 ACTTA
37314568 AATATCTTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.31
Consensus pattern (25 bp):
ACTTACATAATACAAAACATACATA
Found at i:37314666 original size:9 final size:9
Alignment explanation
Indices: 37314532--37314983 Score: 79
Period size: 9 Copynumber: 50.4 Consensus size: 9
37314522 ATACATAGCA
*
37314532 TACATAACT
1 TACATAAAT
37314541 TACAT-AA-
1 TACATAAAT
37314548 TACA-AAACT
1 TACATAAA-T
*
37314557 TACATAACT
1 TACATAAAT
* **
37314566 TAAATATCT
1 TACATAAAT
* *
37314575 TACACAACT
1 TACATAAAT
* *
37314584 TACACAACT
1 TACATAAAT
* *
37314593 TAAATAATT
1 TACATAAAT
* *
37314602 TAAATAACT
1 TACATAAAT
37314611 TACAT-AA-
1 TACATAAAT
37314618 TACATAATAT
1 TACATAA-AT
37314628 GATACATAAAT
1 --TACATAAAT
37314639 TACATTAATAT
1 TACA-TAA-AT
37314650 GATACATAAAT
1 --TACATAAAT
*
37314661 TACATAACT
1 TACATAAAT
*
37314670 TA-ATTAAT
1 TACATAAAT
37314678 TA-AT--A-
1 TACATAAAT
*
37314683 TACATAAGT
1 TACATAAAT
37314692 TACATAACTTAGT
1 TACATAA---A-T
*
37314705 TA-ATTAAT
1 TACATAAAT
*
37314713 ATACATAAGT
1 -TACATAAAT
*
37314723 TACATAACT
1 TACATAAAT
*
37314732 TA-ATTAAT
1 TACATAAAT
37314740 TA-AT--A-
1 TACATAAAT
*
37314745 TACATAAGT
1 TACATAAAT
*
37314754 TACATTAAT
1 TACATAAAT
*
37314763 TA-ATTAAT
1 TACATAAAT
37314771 ATACATAAAT
1 -TACATAAAT
37314781 TACATTAATAT
1 TACA-TAA-AT
37314792 GATACATAAAT
1 --TACATAAAT
*
37314803 TACATAACT
1 TACATAAAT
*
37314812 TA-ATTAAT
1 TACATAAAT
37314820 TA-AT--A-
1 TACATAAAT
*
37314825 TACATAAGT
1 TACATAAAT
37314834 TACATAACTTAGT
1 TACATAA---A-T
*
37314847 TA-ATTAAT
1 TACATAAAT
*
37314855 ATACATAAGT
1 -TACATAAAT
*
37314865 TACATAACT
1 TACATAAAT
*
37314874 TA-ATTAAT
1 TACATAAAT
*
37314882 T--A-ACA-
1 TACATAAAT
37314887 TACATAAAT
1 TACATAAAT
37314896 TACATTAATATT
1 TACA-TAA-A-T
37314908 ATACATAAAT
1 -TACATAAAT
*
37314918 TACATAACT
1 TACATAAAT
*
37314927 TA-ATTAAT
1 TACATAAAT
37314935 TA-AT--A-
1 TACATAAAT
*
37314940 TACATAAGT
1 TACATAAAT
*
37314949 TACATAACT
1 TACATAAAT
37314958 TACATTAATAT
1 TACA-TAA-AT
37314969 GATACATAAAT
1 --TACATAAAT
37314980 TACA
1 TACA
37314984 AAAAATTGCA
Statistics
Matches: 336, Mismatches: 48, Indels: 118
0.67 0.10 0.24
Matches are distributed among these distances:
5 9 0.03
6 13 0.04
7 13 0.04
8 50 0.15
9 160 0.48
10 28 0.08
11 15 0.04
12 26 0.08
13 22 0.07
ACGTcount: A:0.49, C:0.12, G:0.03, T:0.37
Consensus pattern (9 bp):
TACATAAAT
Found at i:37314686 original size:31 final size:31
Alignment explanation
Indices: 37314630--37315169 Score: 467
Period size: 31 Copynumber: 17.7 Consensus size: 31
37314620 CATAATATGA
*
37314630 TACATAAATTACATTAA-T-ATGATACATAAAT
1 TACATAACTTA-ATTAATTAAT-ATACATAAAT
*
37314661 TACATAACTTAATTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
* *
37314692 TACATAACTTAGTTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
*
37314723 TACATAACTTAATTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
37314754 TAC---A-TTAATTAATTAATATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
*
37314781 TAC---A-TTAA-T-A-T--GATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
*
37314803 TACATAACTTAATTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
* *
37314834 TACATAACTTAGTTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
*
37314865 TACATAACTTAATTAATTAACATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
37314896 TAC---A-TTAA-T-A-T--TATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
*
37314918 TACATAACTTAATTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
37314949 TACATAACTTACATTAA-T-ATGATACATAAAT
1 TACATAACTTA-ATTAATTAAT-ATACATAAAT
* * *
37314980 TACAAAAAATTGCAATTAA-TATTATACATATAACT
1 TAC-ATAACTT--AATTAATTAATATACATA-AA-T
* *
37315015 TAC--AACTTACA-TAACTTACA-ACTTAAATAACT
1 TACATAACTTA-ATTAA-TTA-ATA--TACATAAAT
** *
37315047 TACATAACTTACATTTTTTAATTATTCATAAAT
1 TACATAACTTA-ATTAATTAA-TATACATAAAT
*
37315080 TACATAACTTAATTAGTTAATATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
37315111 TACATAACTTAATTAATTACTCAGTATTATACATAAAT
1 TACATAACTTAATTAA-T--T-A--A-TATACATAAAT
*
37315149 TACATAACTTAGTTAATTAAT
1 TACATAACTTAATTAATTAAT
37315170 GTTATACATA
Statistics
Matches: 431, Mismatches: 32, Indels: 92
0.78 0.06 0.17
Matches are distributed among these distances:
22 26 0.06
24 2 0.00
25 4 0.01
26 10 0.02
27 36 0.08
28 4 0.01
29 2 0.00
30 11 0.03
31 214 0.50
32 32 0.07
33 32 0.07
34 22 0.05
35 8 0.02
37 2 0.00
38 26 0.06
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (31 bp):
TACATAACTTAATTAATTAATATACATAAAT
Found at i:37314714 original size:142 final size:139
Alignment explanation
Indices: 37314583--37314922 Score: 505
Period size: 142 Copynumber: 2.4 Consensus size: 139
37314573 CTTACACAAC
* *
37314583 TTACACAACTTAAATAATTTAA-ATAACTTACATAATACATAATATGATACATAAATTACATTAA
1 TTACATAACTTAATTAATTTAACATAACTTACATAATACATAATAT-ATACATAAATTACATTAA
37314647 TATGATACATAAATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAA
65 TATGATACATAAATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAA
37314712 TATACATAAG
130 TATACATAAG
* *
37314722 TTACATAACTTAATTAATTAATATACATAAGTTACATTAATTA-ATTA-ATATACATAAATTACA
1 TTACATAACTTAATTAATT--TA-ACATAACTTACA-TAA-TACATAATATATACATAAATTACA
37314785 TTAATATGATACATAAATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAA
61 TTAATATGATACATAAATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAA
37314850 TTAATATACATAAG
126 TTAATATACATAAG
* *
37314864 TTACATAACTTAATTAA-TTAACAT-ACATA-A-ATTACATTAATATTATACATAAATTACAT
1 TTACATAACTTAATTAATTTAACATAACTTACATAATACA-TAATA-TATACATAAATTACAT
37314923 AACTTAATTA
Statistics
Matches: 183, Mismatches: 8, Indels: 22
0.86 0.04 0.10
Matches are distributed among these distances:
133 2 0.01
134 2 0.01
135 2 0.01
136 2 0.01
137 19 0.10
138 4 0.02
139 19 0.10
141 3 0.02
142 111 0.61
143 11 0.06
144 6 0.03
145 2 0.01
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.38
Consensus pattern (139 bp):
TTACATAACTTAATTAATTTAACATAACTTACATAATACATAATATATACATAAATTACATTAAT
ATGATACATAAATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAAT
ATACATAAG
Found at i:37314911 original size:22 final size:22
Alignment explanation
Indices: 37314886--37314983 Score: 75
Period size: 22 Copynumber: 4.6 Consensus size: 22
37314876 ATTAATTAAC
37314886 ATACATAAATTACATTAATATT
1 ATACATAAATTACATTAATATT
*
37314908 ATACATAAATTACA-T-A-ACT
1 ATACATAAATTACATTAATATT
* *
37314927 -TA-ATTAATTA-ATATACATAAGT
1 ATACATAAATTACAT-TA-AT-ATT
* *
37314949 -TACATAACTTACATTAATATG
1 ATACATAAATTACATTAATATT
37314970 ATACATAAATTACA
1 ATACATAAATTACA
37314984 AAAAATTGCA
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
16 1 0.02
17 7 0.12
18 3 0.05
19 2 0.03
20 2 0.03
21 2 0.03
22 32 0.54
23 8 0.14
24 2 0.03
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (22 bp):
ATACATAAATTACATTAATATT
Done.