Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 122 of 170
Found at i:37314975 original size:53 final size:51
Alignment explanation
Indices: 37314692--37314977 Score: 220
Period size: 53 Copynumber: 5.1 Consensus size: 51
37314682 ATACATAAGT
*
37314692 TACATAACTTAGTTAATTAATATACATAAGTTACATAACTTAATTAATTAATA
1 TACATAACTTAATTAATTAATATACATAAGTTACATAACTTAATTAA-T-ATA
* * *
37314745 TACATAAGTTACATTAATTAATTAATATACATAAATTACATTAA-TATGA-TACATAAA
1 TACAT-A---AC-TTAATTAATTAATATACATAAGTTACA-TAACT-TAATTA-ATATA
37314802 TTACATAACTTAATTAATTAATATACATAAGTTACATAACTTAGTTAATTAATATACATAA
1 -TACATAACTTAATTAATTAATATACATAAGTTACATAAC----TTAATT-A-AT--AT-A
* * * *
37314863 GTTACATAACTTAATTAATTAACATACATAAATTACATTAA--TATTATACATAAA
1 --TACATAACTTAATTAATTAATATACATAAGTTACA-TAACTTAAT-TA-ATATA
37314917 TTACATAACTTAATTAATTAATATACATAAGTTACATAACTTACATTAATATGA
1 -TACATAACTTAATTAATTAATATACATAAGTTACATAACTTA-ATTAATAT-A
37314971 TACATAA
1 TACATAA
37314978 ATTACAAAAA
Statistics
Matches: 190, Mismatches: 17, Indels: 52
0.73 0.07 0.20
Matches are distributed among these distances:
52 6 0.03
53 75 0.39
54 9 0.05
55 2 0.01
56 2 0.01
57 13 0.07
58 38 0.20
59 6 0.03
60 1 0.01
61 1 0.01
62 34 0.18
63 3 0.02
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.38
Consensus pattern (51 bp):
TACATAACTTAATTAATTAATATACATAAGTTACATAACTTAATTAATATA
Found at i:37315030 original size:16 final size:16
Alignment explanation
Indices: 37315009--37315060 Score: 77
Period size: 16 Copynumber: 3.1 Consensus size: 16
37314999 TATTATACAT
37315009 ATAACTTACAACTTAC
1 ATAACTTACAACTTAC
*
37315025 ATAACTTACAACTTAA
1 ATAACTTACAACTTAC
37315041 ATAACTTACATAACTTAC
1 ATAACTTAC--AACTTAC
37315059 AT
1 AT
37315061 TTTTTAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 24 0.75
18 8 0.25
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAACTTACAACTTAC
Found at i:37315032 original size:9 final size:9
Alignment explanation
Indices: 37315009--37315299 Score: 74
Period size: 9 Copynumber: 34.3 Consensus size: 9
37314999 TATTATACAT
37315009 ATAACTTAC
1 ATAACTTAC
37315018 --AACTTAC
1 ATAACTTAC
37315025 ATAACTTAC
1 ATAACTTAC
*
37315034 --AACTTAA
1 ATAACTTAC
37315041 ATAACTTAC
1 ATAACTTAC
37315050 ATAACTTAC
1 ATAACTTAC
***
37315059 ATTTTTTA-
1 ATAACTTAC
*
37315067 ATTA-TT-C
1 ATAACTTAC
*
37315074 ATAAATTAC
1 ATAACTTAC
37315083 ATAACTTA-
1 ATAACTTAC
* *
37315091 ATTAGTTA-
1 ATAACTTAC
37315099 AT-A--TAC
1 ATAACTTAC
*
37315105 ATAAATTAC
1 ATAACTTAC
37315114 ATAACTTA-
1 ATAACTTAC
37315122 ATTAA-TTAC
1 A-TAACTTAC
*
37315131 -TCAGTATTATAC
1 AT-A--ACT-TAC
*
37315143 ATAAATTAC
1 ATAACTTAC
*
37315152 ATAACTTAG
1 ATAACTTAC
*
37315161 TTAA-TTA-
1 ATAACTTAC
**
37315168 AT-GTTATAC
1 ATAACT-TAC
37315177 ATAACTTAC
1 ATAACTTAC
37315186 --AACTTAC
1 ATAACTTAC
37315193 ATAACTTAC
1 ATAACTTAC
***
37315202 AATTTTTTA-
1 -ATAACTTAC
*
37315211 ATTA-TT-C
1 ATAACTTAC
* *
37315218 GTAAATTAC
1 ATAACTTAC
37315227 ATAACTTAC
1 ATAACTTAC
* * *
37315236 TTAATTTTC
1 ATAACTTAC
*
37315245 ATAA--TAA
1 ATAACTTAC
37315252 ATAACTTAC
1 ATAACTTAC
*
37315261 ACAACTTAC
1 ATAACTTAC
*
37315270 ATAACTTAT
1 ATAACTTAC
** *
37315279 ACGACATAC
1 ATAACTTAC
37315288 ATAACTTAC
1 ATAACTTAC
37315297 ATA
1 ATA
37315300 GCATAATTTG
Statistics
Matches: 207, Mismatches: 44, Indels: 62
0.66 0.14 0.20
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 39 0.19
8 28 0.14
9 121 0.58
10 9 0.04
11 1 0.00
12 4 0.02
13 1 0.00
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (9 bp):
ATAACTTAC
Found at i:37320907 original size:66 final size:65
Alignment explanation
Indices: 37320799--37320962 Score: 186
Period size: 66 Copynumber: 2.5 Consensus size: 65
37320789 GAGCAAATTA
* * * *
37320799 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGATGTTCAAAG-AAGATATGAAAAACTCCA
1 CACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAG-TATGAAAAACTCCA
37320863 G
65 G
* * *
37320864 CTACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCTA
1 C-ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAAAACTCCA
37320929 G
65 G
* * * * *
37320930 CAGCAGCTTAGAGCAGATGCGGCAGCAAGAGAA
1 CA-CAACTTAAAGCGGATGCAGCAGCGAGAGAA
37320963 ACAGAAGCGG
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
65 2 0.02
66 79 0.94
67 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.27, T:0.15
Consensus pattern (65 bp):
CACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAGTATGAAAAACTCCAG
Found at i:37320972 original size:21 final size:21
Alignment explanation
Indices: 37320943--37320983 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
37320933 CAGCTTAGAG
*
37320943 CAGATGCGGCAGCAAGAGAAA
1 CAGAAGCGGCAGCAAGAGAAA
*
37320964 CAGAAGCGGCAGCGAGAGAA
1 CAGAAGCGGCAGCAAGAGAA
37320984 GTACAGGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.20, G:0.37, T:0.02
Consensus pattern (21 bp):
CAGAAGCGGCAGCAAGAGAAA
Found at i:37321052 original size:21 final size:21
Alignment explanation
Indices: 37320972--37321052 Score: 99
Period size: 21 Copynumber: 3.9 Consensus size: 21
37320962 AACAGAAGCG
* * *
37320972 GCAGCGAGAGAAGTACAGGCT
1 GCAGCGAGGGAAGCAGAGGCT
*
37320993 GCAGCGAGGGAAGCAAAGGCT
1 GCAGCGAGGGAAGCAGAGGCT
** *
37321014 AAAGCGAGGGAAGTAGAGGCT
1 GCAGCGAGGGAAGCAGAGGCT
37321035 GCAGCGAGGGAAGCAGAG
1 GCAGCGAGGGAAGCAGAG
37321053 CAGCGTCAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.35, C:0.16, G:0.43, T:0.06
Consensus pattern (21 bp):
GCAGCGAGGGAAGCAGAGGCT
Found at i:37321235 original size:10 final size:9
Alignment explanation
Indices: 37321216--37321245 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
37321206 TAATACGAAT
37321216 TTTATTATA
1 TTTATTATA
37321225 TTTATTGATA
1 TTTATT-ATA
37321235 TTTATTATA
1 TTTATTATA
37321244 TT
1 TT
37321246 ATTTGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTATTATA
Found at i:37321450 original size:44 final size:43
Alignment explanation
Indices: 37321400--37321518 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 43
37321390 TAAAGGTGTT
*
37321400 GGTCTTTAGCAGCGTTTTTGGTAAAAAGCGCCGCTATAGATCAG
1 GGTCTTTAGCGGCGTTTTT-GTAAAAAGCGCCGCTATAGATCAG
* * ** *
37321444 GGTCTTTAGTGGCGTTTGTG-ACCGAAGCGCCGCTATAGATCAT
1 GGTCTTTAGCGGCGTTTTTGTA-AAAAGCGCCGCTATAGATCAG
37321487 GGTCTATT-GCGGCGTTTTTAGT-AAAAGCGCCG
1 GGTCT-TTAGCGGCGTTTTT-GTAAAAAGCGCCG
37321519 ATAAAGACCC
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
42 1 0.02
43 41 0.67
44 19 0.31
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (43 bp):
GGTCTTTAGCGGCGTTTTTGTAAAAAGCGCCGCTATAGATCAG
Found at i:37321536 original size:43 final size:43
Alignment explanation
Indices: 37321489--37321781 Score: 342
Period size: 43 Copynumber: 6.8 Consensus size: 43
37321479 TAGATCATGG
* * * *
37321489 TCTATTGCGGCGTTTTTAGTAAAAGCGCCGATAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCGATAAAGACCCTGA
* **
37321532 TCTATAGCAGCGCTTTGCGCAAAAACGCC-ACTAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCGA-TAAAGACCCTGA
* *
37321575 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCGATAAAGACCCTGA
* *
37321618 TCTATAGCGGCGCTTCGT-GCAAAAACGCC-ACTAAAGACCTTGA
1 TCTATAGCGGCGCTT-TTAGCAAAAACGCCGA-TAAAGACCCTGA
* *
37321661 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCGATAAAGACCCTGA
* *** *
37321704 TCTATAGCGGTGCTTAGCGCAAAAACGCC-ACTAAAGACCTTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCGA-TAAAGACCCTGA
* *
37321747 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCGATAAA
37321782 TGTATTAGTC
Statistics
Matches: 209, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
42 2 0.01
43 206 0.99
44 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (43 bp):
TCTATAGCGGCGCTTTTAGCAAAAACGCCGATAAAGACCCTGA
Found at i:37321585 original size:86 final size:86
Alignment explanation
Indices: 37321489--37321781 Score: 478
Period size: 86 Copynumber: 3.4 Consensus size: 86
37321479 TAGATCATGG
* * ** * * * *
37321489 TCTATTGCGGCGTTTTTAGTAAAAGCGCCGATAAAGACCCTGATCTATAGCAGCGCTTTGCGCAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
*
37321554 AAACGCCACTAAAGACCCTGA
66 AAACGCCACTAAAGACCTTGA
* *
37321575 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTCGTGCAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
37321640 AAACGCCACTAAAGACCTTGA
66 AAACGCCACTAAAGACCTTGA
*
37321661 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGTGCTTAGCGCAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
37321726 AAACGCCACTAAAGACCTTGA
66 AAACGCCACTAAAGACCTTGA
37321747 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAA
37321782 TGTATTAGTC
Statistics
Matches: 194, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 194 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (86 bp):
TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
AAACGCCACTAAAGACCTTGA
Found at i:37321770 original size:129 final size:128
Alignment explanation
Indices: 37321489--37321781 Score: 378
Period size: 129 Copynumber: 2.3 Consensus size: 128
37321479 TAGATCATGG
* * * * *
37321489 TCTATTGCGGCGTTTTTAGTAAAAGCGCCGA-TAAAGACCCTGATCTATAGCAGCGCTTTGCGCA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCC-ACTAAAGACCCTGATCTATAGCAGCGCTTTACGCA
*
37321553 AAAACGCCACTAAAGACCCTGATCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGA
65 AAAACGCCACTAAAGACCCTGATCTATAGCGGCGC-TTTACCAAAAACGCCACTAAAGACCCTGA
* * *
37321618 TCTATAGCGGCGCTTCGT-GCAAAAACGCCACTAAAGACCTTGATCTATAGCGGCGCTTTTAC-C
1 TCTATAGCGGCGCTT-TTAGCAAAAACGCCACTAAAGACCCTGATCTATAGCAGCGC-TTTACGC
* * *
37321681 AAAAACGCCGCTAAAGACCCTGATCTATAGCGGTGC-TTAGCGCAAAAACGCCACTAAAGACCTT
64 AAAAACGCCACTAAAGACCCTGATCTATAGCGGCGCTTTA-C-CAAAAACGCCACTAAAGACCCT
37321745 GA
127 GA
* *
37321747 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAA
37321782 TGTATTAGTC
Statistics
Matches: 143, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
127 3 0.02
128 3 0.02
129 132 0.92
130 5 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (128 bp):
TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAAGACCCTGATCTATAGCAGCGCTTTACGCAA
AAACGCCACTAAAGACCCTGATCTATAGCGGCGCTTTACCAAAAACGCCACTAAAGACCCTGA
Found at i:37323201 original size:16 final size:17
Alignment explanation
Indices: 37323176--37323210 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
37323166 ATATAACATT
*
37323176 ATATATTCAAATTATTA
1 ATATATTCAAAATATTA
37323193 ATATA-TCAAAATATTA
1 ATATATTCAAAATATTA
37323209 AT
1 AT
37323211 GATGAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATATTCAAAATATTA
Found at i:37323335 original size:21 final size:21
Alignment explanation
Indices: 37323311--37323360 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
37323301 TAACATTATG
* *
37323311 TCTAAACTCAATATTTTATTT
1 TCTAAAATAAATATTTTATTT
37323332 TCTAAAATAAATATTTTATTT
1 TCTAAAATAAATATTTTATTT
*
37323353 TTTAAAAT
1 TCTAAAAT
37323361 TACTTTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (21 bp):
TCTAAAATAAATATTTTATTT
Found at i:37328434 original size:16 final size:16
Alignment explanation
Indices: 37328395--37328434 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
37328385 TATATTTTTT
*
37328395 TATTTTTAATCAAATA
1 TATTTTTTATCAAATA
* *
37328411 TAATTTTTATTAAATA
1 TATTTTTTATCAAATA
37328427 TATTTTTT
1 TATTTTTT
37328435 TGGACTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTTTTTATCAAATA
Found at i:37328435 original size:42 final size:38
Alignment explanation
Indices: 37328372--37328490 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 38
37328362 CGACTCGAAT
37328372 TATATATTAAATATATATTTTTTTATTTTTAATCAAATA
1 TATATATTAAATATAT-TTTTTTTATTTTTAATCAAATA
* * *
37328411 TAATTTTTATTAAATATATTTTTTTGGACTTTTAATCCAAAT-
1 T-A--TATATTAAATATATTTTTTT-TATTTTTAAT-CAAATA
37328453 TATATATTAAATATA-TTTTTTTATTTTTAATCAAATA
1 TATATATTAAATATATTTTTTTTATTTTTAATCAAATA
37328490 T
1 T
37328491 GGGCCAAATT
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
36 5 0.07
37 9 0.13
38 6 0.09
39 13 0.19
40 1 0.01
41 7 0.10
42 22 0.32
43 5 0.07
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (38 bp):
TATATATTAAATATATTTTTTTTATTTTTAATCAAATA
Found at i:37333250 original size:24 final size:24
Alignment explanation
Indices: 37333223--37333269 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
37333213 TTTAGAGAAT
37333223 TTTGTGTTT-ACGTTTTGAGGGTTC
1 TTTGT-TTTCACGTTTTGAGGGTTC
* *
37333247 TTTGTTTTCAGGTTTTTAGGGTT
1 TTTGTTTTCACGTTTTGAGGGTT
37333270 TAGTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.09, C:0.06, G:0.28, T:0.57
Consensus pattern (24 bp):
TTTGTTTTCACGTTTTGAGGGTTC
Found at i:37334508 original size:31 final size:31
Alignment explanation
Indices: 37334418--37334511 Score: 161
Period size: 31 Copynumber: 3.0 Consensus size: 31
37334408 AGATAATTTT
* *
37334418 AAAGAGTTTTATTAGGATTCAATTACTTTTT
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
37334449 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
37334481 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
37334512 TAATTTGCCT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 31 0.52
32 29 0.48
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.45
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:37335164 original size:11 final size:11
Alignment explanation
Indices: 37335081--37335130 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
37335071 AGTAAAAAGT
*
37335081 AAAAAGCGCAA
1 AAAAAGAGCAA
* *
37335092 AAAAAAAACAA
1 AAAAAGAGCAA
37335103 AAAAA-AGC-A
1 AAAAAGAGCAA
*
37335112 AAAAAGCGCAA
1 AAAAAGAGCAA
37335123 AAAAAGAG
1 AAAAAGAG
37335131 AGAGAGTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
9 6 0.19
10 4 0.13
11 21 0.68
ACGTcount: A:0.74, C:0.12, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAGAGCAA
Found at i:37335172 original size:17 final size:18
Alignment explanation
Indices: 37335150--37335190 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
37335140 AAAGCGCAAA
37335150 AAAAAAGAGCAAAA-AGC
1 AAAAAAGAGCAAAAGAGC
* *
37335167 AAAAAAGCGCAAAAGCGC
1 AAAAAAGAGCAAAAGAGC
37335185 AAAAAA
1 AAAAAA
37335191 AAAAAGTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.68, C:0.15, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAGAGCAAAAGAGC
Found at i:37338315 original size:31 final size:31
Alignment explanation
Indices: 37338225--37338318 Score: 161
Period size: 31 Copynumber: 3.0 Consensus size: 31
37338215 AGATAATTTT
* *
37338225 AAAGAGTTTTATTAGGATTCAATTACTTTTT
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
37338256 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
37338288 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
37338319 TAATTTGCCT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 31 0.52
32 29 0.48
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.45
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:37342820 original size:128 final size:129
Alignment explanation
Indices: 37342591--37342886 Score: 477
Period size: 129 Copynumber: 2.3 Consensus size: 129
37342581 GGAAACTAGT
* * * *
37342591 GCTTTAATCTACTCCACTGTAACTTTCAAGGAGATAAGACTAAATACGATTTGCTCTCTGCAACT
1 GCTTTAATCTGCTCCACTGCAA-TTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACT
*
37342656 TCAAAGAGATAAGATCCAAGGTTTTAATCCACTCCAC-TGCAACTTCAGGAAGATAGGATTATCG
65 TCAAAGAGATAAGATCCAAGGTTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTATCG
*
37342720 GCTTTAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTAAATACGATCTGCTCTTTGCAACTT
1 GCTTTAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTT
* *
37342785 TAGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTATCG
66 CAAAGAGATAAGATCCAAGGTTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTATCG
* * *
37342849 GCTTTAATCTGATCCACTACAACTTCAGGGAGATAAGA
1 GCTTTAATCTGCTCCACTGCAATTTCAGGGAGATAAGA
37342887 TTTTCCATCT
Statistics
Matches: 155, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
128 74 0.48
129 81 0.52
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (129 bp):
GCTTTAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTT
CAAAGAGATAAGATCCAAGGTTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTATCG
Found at i:37342917 original size:89 final size:88
Alignment explanation
Indices: 37342824--37343147 Score: 236
Period size: 89 Copynumber: 3.7 Consensus size: 88
37342814 ACTCCACTTA
* * *
37342824 CAACTTCAGGAAGATAGGATTATCGGCTTTAATCTGATCCACTACAACTTCAGGGAGATAAGATT
1 CAACTTCAGGAAGATAAGACTAT-GGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGATT
*
37342889 TTCCATCTTCAGCTTGCCTCACTG
65 TTCCATCTTAAGCTTGCCTCACTG
* * *** * * * *
37342913 CAACTTCAGGAGGATAAGACTA--GATGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TC
1 CAACTTCAGGAAGATAAGACTATGGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGATTT
** * * *
37342974 TAAAGTTTTAATC-CG-CTCACTG
66 TCCA-TCTTAAGCTTGCCTCACTG
** * * * *
37342996 CAACTTCAGCG-AGATCGGATTACCGGCTTTAATCT-ACTCCACTGTAACTTTAGGGAGATAAGA
1 CAACTTCAG-GAAGATAAGACTA-TGGCTTTAATCTGA-TCCACTGCAACTTCAGGGAGATAAGA
* *
37343059 TTTGCCATCTTTAG-TCTGCCTCACTG
63 TTTTCCATCTTAAGCT-TGCCTCACTG
* * * *
37343085 CAACTTCAGGAGGATAAGACT-TGCCTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 CAACTTCAGGAAGATAAGACTATGGCT--TTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
37343148 CTCGATCTGT
Statistics
Matches: 171, Mismatches: 49, Indels: 30
0.68 0.20 0.12
Matches are distributed among these distances:
83 23 0.13
84 5 0.03
85 26 0.15
86 15 0.09
87 27 0.16
88 4 0.02
89 71 0.42
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (88 bp):
CAACTTCAGGAAGATAAGACTATGGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGATTT
TCCATCTTAAGCTTGCCTCACTG
Found at i:37343084 original size:45 final size:44
Alignment explanation
Indices: 37343032--37343149 Score: 152
Period size: 44 Copynumber: 2.7 Consensus size: 44
37343022 CTTTAATCTA
* * *
37343032 CTCCACTGTAACTTTAGGGAGATAAGATTTGCC-ATCTTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCTA-C-TTAGTCTG
37343077 C-CTCACTGCAACTTCA-GGAGGATAAGACTTGCCTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCTACTTAGTCTG
37343121 CTCCACTGCAACTTCAGGGAGATAAGACT
1 CTCCACTGCAACTTCAGGGAGATAAGACT
37343150 CGATCTGTTA
Statistics
Matches: 65, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
44 35 0.54
45 29 0.45
46 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCCTACTTAGTCTG
Found at i:37343089 original size:172 final size:173
Alignment explanation
Indices: 37342678--37343105 Score: 539
Period size: 172 Copynumber: 2.5 Consensus size: 173
37342668 GATCCAAGGT
* * * ** *
37342678 TTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTAT-CGGCTTTAATCTG-CTCCACTGCA
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT-TCCATCTTTAGTCTGCCT-CACTGCA
* * * *
37342741 ATTTCAGG-GAGATAAGACTAAATACGATCTGCTCTTTGCAACTTTAGAGAGATAAGATCCAAGG
64 ACTTCAGGAG-GATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAAG
*
37342805 TTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTATCGGC
128 TTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTACCGGC
* *
37342851 TTTAATCTGA-TCCACTACAACTTCAGGGAGATAAGATTTTCCATCTTCAG-CTTGCCTCACTGC
1 TTTAATCT-ACTCCACTGCAACTTCAGGGAGATAAGA-TTTCCATCTTTAGTC-TGCCTCACTGC
* * *
37342914 AACTTCAGGAGGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAAG
63 AACTTCAGGAGGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAAG
* * *
37342979 TTTTAATCCGCT-CAC-TGCAACTTCAGCG-AGATCGGATTACCGGC
128 TTTTAATCCACTCCACTTACAACTTCAG-GAAGATAGGATTACCGGC
* *
37343023 TTTAATCTACTCCACTGTAACTTTAGGGAGATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAA
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTT-CCATCTTTAGTCTGCCTCACTGCAA
37343088 CTTCAGGAGGATAAGACT
65 CTTCAGGAGGATAAGACT
37343106 TGCCTACTTA
Statistics
Matches: 222, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
171 4 0.02
172 95 0.43
173 37 0.17
174 83 0.37
175 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (173 bp):
TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTCCATCTTTAGTCTGCCTCACTGCAAC
TTCAGGAGGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAAGTTT
TAATCCACTCCACTTACAACTTCAGGAAGATAGGATTACCGGC
Found at i:37343131 original size:44 final size:45
Alignment explanation
Indices: 37342850--37343149 Score: 168
Period size: 45 Copynumber: 6.9 Consensus size: 45
37342840 GGATTATCGG
* * * * *
37342850 CTTTAATCTGATCCACTACAACTTCAGGGAGATAAGATTTTCCAT
1 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* *
37342895 CTTCAG-CTTGC-CTCACTGCAACTTCA-GGAGGATAAGACTAG--AT
1 CTTTAGTC-TGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
* * * **
37342938 GC--GA-TCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TCT-AAAGT
1 -CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCCA-T
* * * ** * **
37342980 -TTTAATCCGCT-CACTGCAACTTCAGCGAGATCGGA-TTACCGG
1 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * * *
37343022 CTTTAATCTACTCCACTGTAACTTTAGGGAGATAAGATTTGCCAT
1 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
37343067 CTTTAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCC-T
1 CTTTAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
37343111 AC-TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 -CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
37343150 CGATCTGTTA
Statistics
Matches: 196, Mismatches: 36, Indels: 47
0.70 0.13 0.17
Matches are distributed among these distances:
39 1 0.01
40 19 0.10
41 6 0.03
42 5 0.03
43 37 0.19
44 61 0.31
45 67 0.34
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (45 bp):
CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
Found at i:37345176 original size:13 final size:13
Alignment explanation
Indices: 37345160--37345184 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37345150 CCATACCTCA
37345160 CATGGAGAAAGGC
1 CATGGAGAAAGGC
37345173 CATGGAGAAAGG
1 CATGGAGAAAGG
37345185 TCACGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.40, T:0.08
Consensus pattern (13 bp):
CATGGAGAAAGGC
Found at i:37351230 original size:24 final size:24
Alignment explanation
Indices: 37351201--37351246 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
37351191 ATCATCTTTT
* *
37351201 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATGCATTTCCTTTTGAA
*
37351225 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCATGCATTTCCTTTTG
37351247 GGATTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (24 bp):
GCTGCTCATGCATTTCCTTTTGAA
Found at i:37366232 original size:20 final size:20
Alignment explanation
Indices: 37366207--37366244 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37366197 AATATTATAT
*
37366207 TAATTATATATGTTAAATAA
1 TAATTATATATATTAAATAA
37366227 TAATTATATATATTAAAT
1 TAATTATATATATTAAAT
37366245 CACGAATCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAATTATATATATTAAATAA
Found at i:37372803 original size:25 final size:25
Alignment explanation
Indices: 37372748--37372842 Score: 88
Period size: 25 Copynumber: 3.8 Consensus size: 25
37372738 CATACTGCCC
* *
37372748 TACAGCTCGTACGAGCTTACCAATT
1 TACAGCTCGTATGAGCATACCAATT
*
37372773 CT-CAGCTCGTATGAGCTTA-CAGATT
1 -TACAGCTCGTATGAGCATACCA-ATT
* *
37372798 TACAGCTCG-AGAGAGCATATCAATT
1 TACAGCTCGTA-TGAGCATACCAATT
*
37372823 CACAGCTCGTATGAGCATAC
1 TACAGCTCGTATGAGCATAC
37372843 ATGTAAAGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
24 4 0.07
25 50 0.86
26 4 0.07
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (25 bp):
TACAGCTCGTATGAGCATACCAATT
Found at i:37373040 original size:31 final size:32
Alignment explanation
Indices: 37372987--37373047 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
37372977 TATTTACATG
*
37372987 AAATACATGGAAATGATTTTACATG-ATATAC
1 AAATACATGGAAATGATGTTACATGTATATAC
*
37373018 AAATACAT-GATATGGATGTTACATGTATAT
1 AAATACATGGAAAT-GATGTTACATGTATAT
37373048 GGAAACTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 4 0.15
31 18 0.69
32 4 0.15
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (32 bp):
AAATACATGGAAATGATGTTACATGTATATAC
Found at i:37380200 original size:17 final size:17
Alignment explanation
Indices: 37380178--37380211 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37380168 CACTAACATG
37380178 AAAATGTAATGACAATA
1 AAAATGTAATGACAATA
*
37380195 AAAATGTAATGGCAATA
1 AAAATGTAATGACAATA
37380212 TATACTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (17 bp):
AAAATGTAATGACAATA
Found at i:37380668 original size:21 final size:21
Alignment explanation
Indices: 37380644--37380697 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
37380634 TTCTCATTTT
* *
37380644 CAACTACTTCTTCTTCTTCAC
1 CAACAACTTCTTCTTCTACAC
*
37380665 CAACAACTTCCTCTTCTACAC
1 CAACAACTTCTTCTTCTACAC
37380686 CAACAACTTCTT
1 CAACAACTTCTT
37380698 TCTCAACAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.26, C:0.39, G:0.00, T:0.35
Consensus pattern (21 bp):
CAACAACTTCTTCTTCTACAC
Found at i:37381442 original size:24 final size:24
Alignment explanation
Indices: 37381410--37381457 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
37381400 GATGATAGAA
37381410 TGTATCATACACATTCTGTCGAGG
1 TGTATCATACACATTCTGTCGAGG
37381434 TGTATCATACACATTCTGTCGAGG
1 TGTATCATACACATTCTGTCGAGG
37381458 GTGACTATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (24 bp):
TGTATCATACACATTCTGTCGAGG
Found at i:37387867 original size:28 final size:28
Alignment explanation
Indices: 37387836--37387922 Score: 174
Period size: 28 Copynumber: 3.1 Consensus size: 28
37387826 ATAATCAACC
37387836 AACCAAAATATCCATAGTTCCATACATT
1 AACCAAAATATCCATAGTTCCATACATT
37387864 AACCAAAATATCCATAGTTCCATACATT
1 AACCAAAATATCCATAGTTCCATACATT
37387892 AACCAAAATATCCATAGTTCCATACATT
1 AACCAAAATATCCATAGTTCCATACATT
37387920 AAC
1 AAC
37387923 ATATTTAATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.28
Consensus pattern (28 bp):
AACCAAAATATCCATAGTTCCATACATT
Found at i:37411805 original size:41 final size:41
Alignment explanation
Indices: 37411758--37411842 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
37411748 AAGAGTTCAA
37411758 AATAAAGTTTAAATTTTAAAATATCTCATAAAATCCTAATC
1 AATAAAGTTTAAATTTTAAAATATCTCATAAAATCCTAATC
37411799 AATAAAGTTTAAATTTTAAAATATCTCATAAAATCCTAATC
1 AATAAAGTTTAAATTTTAAAATATCTCATAAAATCCTAATC
37411840 AAT
1 AAT
37411843 CCATAAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.36
Consensus pattern (41 bp):
AATAAAGTTTAAATTTTAAAATATCTCATAAAATCCTAATC
Found at i:37415178 original size:7 final size:7
Alignment explanation
Indices: 37415166--37415190 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
37415156 TTCTTATTTT
37415166 GTTCTTC
1 GTTCTTC
37415173 GTTCTTC
1 GTTCTTC
37415180 GTTCTTC
1 GTTCTTC
37415187 GTTC
1 GTTC
37415191 ATCTTCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.16, T:0.56
Consensus pattern (7 bp):
GTTCTTC
Found at i:37417635 original size:19 final size:19
Alignment explanation
Indices: 37417611--37417655 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37417601 TCTTTTTTTT
*
37417611 TGCATT-CATTCCATGCATC
1 TGCATTACATTCCAT-CATA
*
37417630 TGCATTACATTGCATCATA
1 TGCATTACATTCCATCATA
37417649 TGCATTA
1 TGCATTA
37417656 GATTTTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (19 bp):
TGCATTACATTCCATCATA
Found at i:37420769 original size:9 final size:9
Alignment explanation
Indices: 37420755--37420779 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37420745 CTTGAGACAA
37420755 AAAAAAATC
1 AAAAAAATC
37420764 AAAAAAATC
1 AAAAAAATC
37420773 AAAAAAA
1 AAAAAAA
37420780 AGAGAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAATC
Found at i:37421733 original size:24 final size:24
Alignment explanation
Indices: 37421701--37421752 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
37421691 CAAAAGTACT
37421701 GTGGATTGAACCTTGAAGATTACA
1 GTGGATTGAACCTTGAAGATTACA
*
37421725 GTGGATTGAACCTTGAAGATTACT
1 GTGGATTGAACCTTGAAGATTACA
37421749 GTGG
1 GTGG
37421753 GGACAATCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.31
Consensus pattern (24 bp):
GTGGATTGAACCTTGAAGATTACA
Found at i:37422128 original size:45 final size:45
Alignment explanation
Indices: 37422030--37422374 Score: 278
Period size: 45 Copynumber: 7.7 Consensus size: 45
37422020 GGTGAAACCA
* * ***
37422030 CAAATCCTATCTCCCT-AAGGTTACAGTGGAGCAGACTGAAGAAAA
1 CAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACTGAAGATGG
* * *
37422075 CAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGG
* * *
37422120 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCTA-A-TTAA-A-GC
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGACTGAAGATGG
* * *
37422162 CAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GC
1 C-A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGG
* * * * * **
37422206 CAATAATCTTATCTTCTTGAAGTTGCAGTGGAGCGGATTAAAG-TTA
1 C-A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGG
* * * **
37422252 CAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGAAAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGG
* *
37422297 CAAGTCTTATCCCCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGG
1 CAAATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGACTGAAGATGG
* * *
37422342 CAAATCTTATCTCTCTAAAGTTGCAATGGAGCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
37422375 AATTAAAGCC
Statistics
Matches: 245, Mismatches: 44, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 105 0.43
45 129 0.53
46 6 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (45 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGG
Found at i:37422416 original size:178 final size:176
Alignment explanation
Indices: 37422074--37422461 Score: 460
Period size: 178 Copynumber: 2.2 Consensus size: 176
37422064 ACTGAAGAAA
* * ** *
37422074 ACAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTG-AGTGGAGCAGACTGAAGAAAGCAAATCTTATCCCCCTGAA
* * * * *
37422139 GTTGTAGTGGAGCTAATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
65 GTTGCAGTGGAGCTAATGAAAGCCAATAATCCTATCTCCCTAAAGTTGCAATGGAGCAAATTAAA
* * * * *
37422204 GCCAATAATCTTATCTTCTTGAAGTTGCAGTGGAGCGGATTAAAGTT
130 GCCAAAAATCCTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAGTT
* *
37422251 ACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTG-AGTGGAGCAGACTGAAGAAAGCAAATCTTATCCCCCTGAA
* * *
37422316 GTTGCAGTAGG-GC-AGACTGAAGATGGC-A-AATCTTATCTCTCTAAAGTTGCAATGGAGCAAA
65 GTTGCAGT-GGAGCTA-A-TGAA-A-GCCAATAATCCTATCTCCCTAAAGTTGCAATGGAGCAAA
*
37422377 TTAAAGCCAAAAATCCTATCTCCTTGAAATTGTAGTGGAGCAGATTAAAGTT
125 TTAAAGCCAAAAATCCTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAGTT
* * *
37422429 AAAAATCTTATCTCCTTGAAGTTGATGTGGAGC
1 ACAAGTCTTATCTCCCTGAAGTTGA-GTGGAGC
37422462 GGATTAAAGT
Statistics
Matches: 179, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
176 1 0.01
177 68 0.38
178 106 0.59
179 2 0.01
180 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (176 bp):
ACAAGTCTTATCTCCCTGAAGTTGAGTGGAGCAGACTGAAGAAAGCAAATCTTATCCCCCTGAAG
TTGCAGTGGAGCTAATGAAAGCCAATAATCCTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAG
CCAAAAATCCTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAGTT
Found at i:37422423 original size:222 final size:222
Alignment explanation
Indices: 37422037--37422483 Score: 716
Period size: 222 Copynumber: 2.0 Consensus size: 222
37422027 CCACAAATCC
*
37422037 TATCTCCCTAAGGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAGT
1 TATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAGT
* * * * * *
37422102 GGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCTAATTAAAGCCAATA
66 AGGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGCCAAAA
* * *
37422167 ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCTTATCTTCTTGAAGTTGC
131 ATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCAAAAATCTTATCTCCTTGAAGTTG-
37422232 A-GTGGAGCGGATTAAAGTTACAAGTCT
195 ATGTGGAGCGGATTAAAGTTACAAGTCT
** *
37422259 TATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGT
1 TATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAGT
*
37422324 AGGGCAGACTGAAGATGGCAAATCTTATCTCTCTAAAGTTGCAATGGAGCAAATTAAAGCCAAAA
66 AGGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGCCAAAA
* * **
37422389 ATCCTATCTCCTTGAAATTGTAGTGGAGCAGATTAAAGTTAAAAATCTTATCTCCTTGAAGTTGA
131 ATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCAAAAATCTTATCTCCTTGAAGTTGA
37422454 TGTGGAGCGGATTAAAGTTACAAGTCT
196 TGTGGAGCGGATTAAAGTTACAAGTCT
37422481 TAT
1 TAT
37422484 TGAAGAAAGC
Statistics
Matches: 206, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
221 1 0.00
222 205 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (222 bp):
TATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAGT
AGGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGCCAAAA
ATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCAAAAATCTTATCTCCTTGAAGTTGA
TGTGGAGCGGATTAAAGTTACAAGTCT
Found at i:37422473 original size:44 final size:44
Alignment explanation
Indices: 37422031--37422471 Score: 320
Period size: 44 Copynumber: 9.9 Consensus size: 44
37422021 GTGAAACCAC
* * * * *
37422031 AAATCCTATCTCCCT-AAGGTTACAGTGGAGCAGACTGAAG-AAA
1 AAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAGTCAA
* * * * ***
37422074 ACAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGC
1 A-AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TCAA
* *
37422121 AAATCTTATCTCCCTGAAGTTGTAGTGGAGCTA-ATTAAAGCCAA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTAAAGTCAA
* * *
37422165 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
* * * * * *
37422209 TAATCTTATCTTCTTGAAGTTGCAGTGGAGCGGATTAAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
* * * * *
37422253 AAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAG--AA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
* * * ***
37422295 AGCAAGTCTTATCCCCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGC
1 A--AA-TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTAAAG-TCAA
* * * * *
37422343 AAATCTTATCTCTCTAAAGTTGCAATGGAGCAAATTAAAGCCAA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
* * * * *
37422387 AAATCCTATCTCCTTGAAATTGTAGTGGAGCAGATTAAAGTTAA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
* *
37422431 AAATCTTATCTCCTTGAAGTTG-ATGTGGAGCGGATTAAAGT
1 AAATCTTATCTCCCTGAAGTTGCA-GTGGAGCAGATTAAAGT
37422472 TACAAGTCTT
Statistics
Matches: 316, Mismatches: 66, Indels: 31
0.77 0.16 0.08
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 182 0.58
45 118 0.37
46 9 0.03
47 1 0.00
48 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA
Found at i:37422712 original size:42 final size:41
Alignment explanation
Indices: 37422592--37422712 Score: 118
Period size: 42 Copynumber: 2.9 Consensus size: 41
37422582 TAAATCATAG
* * * * *
37422592 ATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCATGGAAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATGAAGGAAA
* * **
37422633 ATCTTATCTCCTTGAAGTTGCAATGGAGCGGATTGAAGTG-AA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAG-GAAA
*
37422675 GTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAG
37422713 ATAGCAAATC
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
41 25 0.40
42 37 0.59
43 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (41 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATGAAGGAAA
Found at i:37422822 original size:181 final size:179
Alignment explanation
Indices: 37422494--37422851 Score: 464
Period size: 181 Copynumber: 2.0 Consensus size: 179
37422484 TGAAGAAAGC
* * ** * * *
37422494 AAGTCTTATCCCCCTGAAGTTGCAGTGGGGTAGATTGAAGATAGTGAATCTCATTTTCTTGAAGC
1 AAGTCTTATCCCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTCATTTCCCTGAAAC
* * ** *
37422559 TACAGTGGAACAGATTAAAGTTATAAATCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGA
66 TACAGTAGAACAGATCAAAACTATAAATCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGA
** * *
37422624 TCATGGAAAATCTTATCTCCTTGAAGTTGCAATGGAGCGGATTGAAGTG
131 TCACAGAAAACCTTATCTCCCTGAAGTTGCAATGGAGCGGATTGAAGTG
* **
37422673 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTGTTTCCCTGAAAA
1 AAGTCTTATCCCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTCATTTCCCTG-AAA
* * * *
37422738 TTACAGTAGAATAGATCAAAACTATAAATTATAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCA
65 CTACAGTAGAACAGATCAAAACTATAAATCAT-AGATCTTATCTCTCTAAAGTTGCAGTAGAGCA
** *
37422803 GATCACATCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAG
129 GATCACAGAAAACCTTATCTCCCTGAAGTTGCAATGGAGCGGATTGAAG
37422852 CTACTAATCC
Statistics
Matches: 151, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
179 52 0.34
180 27 0.18
181 72 0.48
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (179 bp):
AAGTCTTATCCCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTCATTTCCCTGAAAC
TACAGTAGAACAGATCAAAACTATAAATCATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGA
TCACAGAAAACCTTATCTCCCTGAAGTTGCAATGGAGCGGATTGAAGTG
Found at i:37423124 original size:89 final size:89
Alignment explanation
Indices: 37422971--37423257 Score: 326
Period size: 89 Copynumber: 3.2 Consensus size: 89
37422961 CCTGAAGTTA
* * * * * * *
37422971 CAGTGGAGCAGACTGACGACAGTAGATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAAGAC
1 CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCAAAGAC
* *
37423036 ACTAGCCTTGGCTCCTTGAGTTTG
66 ACAAGCCTTGCCTCCTTGAGTTTG
* * * *
37423060 TAGTGGAGTAGACTGAAGATAGCATATCTTGTCTTTCTGTACTGGCAGTGAAGCAGATCAAAGAC
1 CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCAAAGAC
** * *
37423125 ACAAATCTTGCCTCCCTAAGTTTG
66 ACAAGCCTTGCCTCCTTGAGTTTG
* * *
37423149 CAGTAGAGTAGACTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAACAGATCGAAA-A
1 CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATC-AAAGA
*
37423213 CACCAGCCTTGCCT-CTCTGAGTTTG
65 CACAAGCCTTGCCTCCT-TGAGTTTG
* **
37423238 CAGTGTAGTAGGTTGAAGAT
1 CAGTGGAGTAGACTGAAGAT
37423258 TGTAGATCCT
Statistics
Matches: 162, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
88 1 0.01
89 158 0.98
90 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (89 bp):
CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCAAAGAC
ACAAGCCTTGCCTCCTTGAGTTTG
Found at i:37423400 original size:44 final size:44
Alignment explanation
Indices: 37423352--37423557 Score: 145
Period size: 44 Copynumber: 4.7 Consensus size: 44
37423342 AAGCCACCAG
* * *
37423352 TCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGA
* * **
37423396 TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGT-GAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-A
* * * * ***
37423440 T-CTGATCT-TCT-CG-AGATAGTAGGAAGCAGATTTAAGCTACCAG-
1 TCCT-ATCTCCCTAAGCAG-TAGT-GG-AGCAGATTGAAGATTGTAGA
* * * *
37423483 TCCTATCTCCCTTAGCAGTAGTGGAGTAGGTTGAAGATTGTATA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGA
* *
37423527 TCCTGTCTCCCTAAGTAGTAGTGGAGCAGAT
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGAT
37423558 CAAAGACGGC
Statistics
Matches: 119, Mismatches: 32, Indels: 22
0.69 0.18 0.13
Matches are distributed among these distances:
41 2 0.02
42 5 0.04
43 22 0.18
44 82 0.69
45 6 0.05
46 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGA
Found at i:37423547 original size:131 final size:131
Alignment explanation
Indices: 37423239--37423628 Score: 593
Period size: 131 Copynumber: 3.0 Consensus size: 131
37423229 CTGAGTTTGC
*
37423239 AGTGTAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* *
37423304 CGAATCTTATCTTCCCAAGGTAGTAAGGACGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCA
66 CGAATCTTATCTTCCCGAGGTAGT-AGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCA
37423369 GT
130 GT
* *
37423371 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* * * * * *
37423436 TGAATCTGATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCTACCAGTCCTATCTCCCTTAGCAG
66 CGAATCTTATCTTCCCGAGGTAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAG
37423501 T
131 T
* * *
37423502 AGTGGAGTAGGTTGAAGATTGTATATCCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* * *
37423567 CGAGTCTTATCTTCCCGAGGTAGTAGGGAAGCAAATTTAAGCCACCAG-CCTTATCTTCCTGA
66 CGAATCTTATCTTCCCGAGGTAGTA-GGAAGCAGATTTAAGCCACCAGTCC-TATCTCCCTGA
37423629 AGTTGCAGTG
Statistics
Matches: 231, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
131 121 0.52
132 110 0.48
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (131 bp):
AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
CGAATCTTATCTTCCCGAGGTAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAG
T
Found at i:37433266 original size:166 final size:166
Alignment explanation
Indices: 37432988--37433477 Score: 856
Period size: 166 Copynumber: 3.0 Consensus size: 166
37432978 TCACCCCCAT
* * * *
37432988 ATATTTACCCTGGAAGGCATTCTTGAAATAGTCCCAGATCACTTGTTCAGGTTGAGCACCTTGCC
1 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
*
37433053 CAACAGTTAACCACCACTGATAAGCTTCGCTCTGGAGT-GGAGACACAACACCCCTCAATTTCTG
66 CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGG-GACACAACACCCCTCAATTTCTG
37433117 AGTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
130 AGTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
*
37433154 ATATTTACCCTGGAAGGCGTTTTTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
1 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
* * *
37433219 CAACAATTAACCACCACTGATAAGCTTCGTTTTAGAGTAGGGACACAACACCCCTCAATTTCTGA
66 CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTCTGA
37433284 GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
131 GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
37433320 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
1 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
* * *
37433385 CAACAGTTAACCACCACTGACAAGCTTCGTTCTGGAGTAGGGACATAACACCCCTCAATTTTTGA
66 CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTCTGA
37433450 GTAGGAGTACAGTTAAGGTCTGTCATAA
131 GTAGGAGTACAGTTAAGGTCTGTCATAA
37433478 TACGCTCAGT
Statistics
Matches: 308, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
166 306 0.99
167 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (166 bp):
ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTCTGA
GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
Found at i:37452946 original size:19 final size:20
Alignment explanation
Indices: 37452902--37452940 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37452892 AAAATAAATA
*
37452902 CCAAAATAAAAATAAAAGTT
1 CCAAAACAAAAATAAAAGTT
*
37452922 CCAAAACAAAATTAAAAGT
1 CCAAAACAAAAATAAAAGT
37452941 CTAAAAGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.18
Consensus pattern (20 bp):
CCAAAACAAAAATAAAAGTT
Found at i:37453170 original size:26 final size:26
Alignment explanation
Indices: 37453139--37453188 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
37453129 TTAGATCAAA
37453139 ATTTTCATATTTTCAGAACATATATC
1 ATTTTCATATTTTCAGAACATATATC
*
37453165 ATTTTCATATTTTCAGAACGTATA
1 ATTTTCATATTTTCAGAACATATA
37453189 GCATATTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.46
Consensus pattern (26 bp):
ATTTTCATATTTTCAGAACATATATC
Found at i:37458921 original size:16 final size:16
Alignment explanation
Indices: 37458900--37458954 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
37458890 AATGCCATTA
37458900 TTCTAAA-TAATAGTTG
1 TTCTAAACT-ATAGTTG
*
37458916 TTCTAAACTTTAGTTG
1 TTCTAAACTATAGTTG
* *
37458932 TTCTTAAC-ATAAGTTA
1 TTCTAAACTAT-AGTTG
37458948 TTCTAAA
1 TTCTAAA
37458955 ATAACAACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 1 0.03
16 30 0.94
17 1 0.03
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (16 bp):
TTCTAAACTATAGTTG
Found at i:37459056 original size:16 final size:16
Alignment explanation
Indices: 37459031--37459071 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
37459021 ATAGTTGTTC
*
37459031 TCTGAACAACAACTGT
1 TCTGAACAACAACTAT
*
37459047 TCTGAGCAACAACTAT
1 TCTGAACAACAACTAT
*
37459063 TCTAAACAA
1 TCTGAACAA
37459072 GAGTTGTTGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.24
Consensus pattern (16 bp):
TCTGAACAACAACTAT
Found at i:37459559 original size:15 final size:16
Alignment explanation
Indices: 37459539--37459569 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
37459529 TTGTTTAGTT
37459539 ATTTATATTT-TTAAA
1 ATTTATATTTATTAAA
37459554 ATTTATATTTATTAAA
1 ATTTATATTTATTAAA
37459570 CAATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTATATTTATTAAA
Found at i:37467359 original size:39 final size:39
Alignment explanation
Indices: 37467177--37467412 Score: 215
Period size: 39 Copynumber: 6.1 Consensus size: 39
37467167 TTAAATTATG
* * ** * *
37467177 AATGTTATGTGATTATACGAGTATTGCAATTTATGCTTT
1 AATGTTATGTGATTATATGAATATTGTGATATATGCTTA
* * ** *
37467216 AATGTTATGTGATTATACGAGTATTGCAATATATTCTTA
1 AATGTTATGTGATTATATGAATATTGTGATATATGCTTA
* * *
37467255 AAAGTTATGTGATTATAT-AAGTATTGTGTTATATGCTTG
1 AATGTTATGTGATTATATGAA-TATTGTGATATATGCTTA
* * *
37467294 AATGTTATGAGATTCTA-CAAGTATTGTGATATATGCTTA
1 AATGTTATGTGATTATATGAA-TATTGTGATATATGCTTA
* * *
37467333 AATGTTATGTGATTATTTGAACATTGTGATATATGCTTG
1 AATGTTATGTGATTATATGAATATTGTGATATATGCTTA
* * * * *
37467372 TATGTTAGGTGATTATATGAGTACTATGATATATGCTTA
1 AATGTTATGTGATTATATGAATATTGTGATATATGCTTA
37467411 AA
1 AA
37467413 AGTGAATATG
Statistics
Matches: 163, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
38 1 0.01
39 160 0.98
40 2 0.01
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (39 bp):
AATGTTATGTGATTATATGAATATTGTGATATATGCTTA
Found at i:37467359 original size:78 final size:78
Alignment explanation
Indices: 37467180--37467415 Score: 258
Period size: 78 Copynumber: 3.0 Consensus size: 78
37467170 AATTATGAAT
** * ** * * **
37467180 GTTATGTGATTATACGAGTATTGCAATTTATGCTTTAATGTTATGTGATTATACGAGTATTGCAA
1 GTTATGTGATTATATAAGCATTGTGATATATGCTTGAATGTTATGTGATTATACGAGTATTGTGA
*
37467245 TATATTCTTAAAA
66 TATATGCTTAAAA
* * * * *
37467258 GTTATGTGATTATATAAGTATTGTGTTATATGCTTGAATGTTATGAGATTCTACAAGTATTGTGA
1 GTTATGTGATTATATAAGCATTGTGATATATGCTTGAATGTTATGTGATTATACGAGTATTGTGA
*
37467323 TATATGCTTAAAT
66 TATATGCTTAAAA
* * * * * *
37467336 GTTATGTGATTATTTGAA-CATTGTGATATATGCTTGTATGTTAGGTGATTATATGAGTACTATG
1 GTTATGTGATTATAT-AAGCATTGTGATATATGCTTGAATGTTATGTGATTATACGAGTATTGTG
37467400 ATATATGCTTAAAA
65 ATATATGCTTAAAA
37467414 GT
1 GT
37467416 GAATATGTTT
Statistics
Matches: 131, Mismatches: 26, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
78 129 0.98
79 2 0.02
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (78 bp):
GTTATGTGATTATATAAGCATTGTGATATATGCTTGAATGTTATGTGATTATACGAGTATTGTGA
TATATGCTTAAAA
Found at i:37467384 original size:117 final size:117
Alignment explanation
Indices: 37467175--37467409 Score: 272
Period size: 117 Copynumber: 2.0 Consensus size: 117
37467165 TCTTAAATTA
* * * * **
37467175 TGAATGTTATGTGATTATACGAGTATTGCAATTTATGCTTTAATGTTATGTGATTATACGAGTAT
1 TGAATGTTATGAGATTATACAAGTATTGCAATATATGCTTAAATGTTATGTGATTATACGAACAT
* * * * *
37467240 TGCAATATATTCTTAAAAGTTATGTGATTATATAAGTATTGTGTTATATGCT
66 TGCAATATATGCTTAAAAGTTAGGTGATTATATAAGTACTATGATATATGCT
* ** **
37467292 TGAATGTTATGAGATTCTACAAGTATTGTGATATATGCTTAAATGTTATGTGATTATTTGAACAT
1 TGAATGTTATGAGATTATACAAGTATTGCAATATATGCTTAAATGTTATGTGATTATACGAACAT
** ** * *
37467357 TGTGATATATGCTTGTATGTTAGGTGATTATATGAGTACTATGATATATGCT
66 TGCAATATATGCTTAAAAGTTAGGTGATTATATAAGTACTATGATATATGCT
37467409 T
1 T
37467410 AAAAGTGAAT
Statistics
Matches: 96, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
117 96 1.00
ACGTcount: A:0.30, C:0.06, G:0.19, T:0.45
Consensus pattern (117 bp):
TGAATGTTATGAGATTATACAAGTATTGCAATATATGCTTAAATGTTATGTGATTATACGAACAT
TGCAATATATGCTTAAAAGTTAGGTGATTATATAAGTACTATGATATATGCT
Found at i:37471621 original size:21 final size:21
Alignment explanation
Indices: 37471597--37471637 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
37471587 GTCAAAAGTA
37471597 TGAATATAAAATGTTCATGTG
1 TGAATATAAAATGTTCATGTG
*
37471618 TGAATTTAAAATGTTCATGT
1 TGAATATAAAATGTTCATGT
37471638 AGTTATAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (21 bp):
TGAATATAAAATGTTCATGTG
Found at i:37471827 original size:30 final size:29
Alignment explanation
Indices: 37471793--37471929 Score: 99
Period size: 29 Copynumber: 4.7 Consensus size: 29
37471783 GATTTTGGTG
37471793 TTATATATATAATATATATATGAGTGGGG-
1 TTATATATATAATATATATATG-GTGGGGT
*
37471822 TT-TATA-AT-ATATATATATGCGTGCATAGGT
1 TTATATATATAATATATATATG-GTG---GGGT
* * *
37471852 GTTATATGTATAATATATATGT-GT-GGTT
1 -TTATATATATAATATATATATGGTGGGGT
* *
37471880 TTGCTATATATAATATATATAT-GTGGGTT
1 TT-ATATATATAATATATATATGGTGGGGT
37471909 TTATTATATATAATATATATA
1 TTA-TATATATAATATATATA
37471930 CGTTTATAGG
Statistics
Matches: 87, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
26 14 0.16
27 4 0.05
28 24 0.28
29 27 0.31
31 2 0.02
32 5 0.06
33 2 0.02
34 9 0.10
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (29 bp):
TTATATATATAATATATATATGGTGGGGT
Found at i:37473271 original size:269 final size:269
Alignment explanation
Indices: 37472785--37473318 Score: 996
Period size: 269 Copynumber: 2.0 Consensus size: 269
37472775 GAACCAATCA
37472785 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
1 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
*
37472850 ATTTTAACCTTGTTTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
66 ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
37472915 GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
131 GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
* *
37472980 TAGGTCGTAGCTGTAAACCATGTAATTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATATT
196 TAGGTCGTAGCTATAAACCATGTAATTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATACT
37473045 GTGTGCATC
261 GTGTGCATC
37473054 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
1 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
37473119 ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
66 ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
* *
37473184 GTTCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAATAATAAAATAGG
131 GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
* * *
37473249 TAGGTCGTAGCTATATACCATGTAGTTGACGTGATAAGTGTGTGTGAATTGTGCATCTAATTACT
196 TAGGTCGTAGCTATAAACCATGTAATTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATACT
37473314 GTGTG
261 GTGTG
37473319 TATATATATA
Statistics
Matches: 257, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
269 257 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (269 bp):
TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
TAGGTCGTAGCTATAAACCATGTAATTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATACT
GTGTGCATC
Found at i:37473502 original size:27 final size:28
Alignment explanation
Indices: 37473448--37473514 Score: 109
Period size: 27 Copynumber: 2.4 Consensus size: 28
37473438 GTGTTATTTG
*
37473448 TATAATATATATGTGTGGTTTTGCTATA
1 TATAATATATATGTGTGGTTTTACTATA
*
37473476 TATAATATATATGTG-GGTTTTATTATA
1 TATAATATATATGTGTGGTTTTACTATA
37473503 TATAATATATAT
1 TATAATATATAT
37473515 ACGTTTATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (28 bp):
TATAATATATATGTGTGGTTTTACTATA
Found at i:37474529 original size:21 final size:21
Alignment explanation
Indices: 37474504--37474548 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
37474494 TGAGTCAAAA
37474504 GTATGAATTTAAAATGTTAAT
1 GTATGAATTTAAAATGTTAAT
*
37474525 GTATGAATTTAAAATGTTCAT
1 GTATGAATTTAAAATGTTAAT
37474546 GTA
1 GTA
37474549 GTTATAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (21 bp):
GTATGAATTTAAAATGTTAAT
Found at i:37475097 original size:35 final size:34
Alignment explanation
Indices: 37475034--37475109 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 34
37475024 GTGTTATATG
*
37475034 TATA-ATATATATGTGTGGTTTTGCTATATATAA
1 TATATATATATATGTGTGGTTTTACTATATATAA
* *
37475067 TATATATATATATTTGTGGGTTTTATTATATATAA
1 TATATATATATATGTGT-GGTTTTACTATATATAA
37475102 TATATATA
1 TATATATA
37475110 CGTTTATAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 4 0.11
34 11 0.29
35 23 0.61
ACGTcount: A:0.36, C:0.01, G:0.12, T:0.51
Consensus pattern (34 bp):
TATATATATATATGTGTGGTTTTACTATATATAA
Found at i:37475122 original size:33 final size:35
Alignment explanation
Indices: 37475058--37475123 Score: 82
Period size: 33 Copynumber: 1.9 Consensus size: 35
37475048 GTGGTTTTGC
* * *
37475058 TATATATAATATATATATATATTTGTGGGTTTTAT
1 TATATATAATATATATATACATTTATAGGTTTTAT
*
37475093 TATATAT-A-ATATATATACGTTTATAGGTTTT
1 TATATATAATATATATATACATTTATAGGTTTT
37475124 GTATTATCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 19 0.70
34 1 0.04
35 7 0.26
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53
Consensus pattern (35 bp):
TATATATAATATATATATACATTTATAGGTTTTAT
Found at i:37475129 original size:35 final size:34
Alignment explanation
Indices: 37475034--37475142 Score: 93
Period size: 34 Copynumber: 3.2 Consensus size: 34
37475024 GTGTTATATG
* *
37475034 TATA-ATATATATGTGTGGTTTTGCTA-TATATAA
1 TATATATATATATTTATGGTTTTG-TATTATATAA
* *
37475067 TATATATATATATTTGTGGGTTT-TATTATAT-A
1 TATATATATATATTTATGGTTTTGTATTATATAA
*
37475099 TA-ATATATATACGTTTATAGGTTTTGTATTATCTAA
1 TATATATATATA--TTTAT-GGTTTTGTATTATATAA
*
37475135 TATGTATA
1 TATATATA
37475143 AATGTATATG
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
31 9 0.15
32 5 0.08
33 13 0.21
34 21 0.34
35 7 0.11
36 3 0.05
37 4 0.06
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (34 bp):
TATATATATATATTTATGGTTTTGTATTATATAA
Found at i:37475517 original size:18 final size:18
Alignment explanation
Indices: 37475496--37475535 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37475486 ATTTGGTGAT
*
37475496 CTGTACTAATATGGCAAA
1 CTGTACTAATATGCCAAA
* *
37475514 CTGTATTAATTTGCCAAA
1 CTGTACTAATATGCCAAA
37475532 CTGT
1 CTGT
37475536 GTATTGTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (18 bp):
CTGTACTAATATGCCAAA
Found at i:37479190 original size:51 final size:51
Alignment explanation
Indices: 37479135--37479233 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
37479125 GCATGAACTG
* * * *
37479135 TTATTTTGCATGAATTGTTATTTGGTATGAACTGATATTTCATATGAATTA
1 TTATTTTGCATGAACTCTCATTTGGTAAGAACTGATATTTCATATGAATTA
* * *
37479186 TTATTTTGCATGAGCTCTCATTTGGTAAGAACTGTTATTTTATATGAA
1 TTATTTTGCATGAACTCTCATTTGGTAAGAACTGATATTTCATATGAA
37479234 CAAATGTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.47
Consensus pattern (51 bp):
TTATTTTGCATGAACTCTCATTTGGTAAGAACTGATATTTCATATGAATTA
Found at i:37479234 original size:17 final size:17
Alignment explanation
Indices: 37479127--37479234 Score: 81
Period size: 17 Copynumber: 6.4 Consensus size: 17
37479117 ATGATAGAGC
*
37479127 ATGAACTGTTATTTTGC
1 ATGAACTGTTATTTTGT
* *
37479144 ATGAATTGTTATTTGGT
1 ATGAACTGTTATTTTGT
* **
37479161 ATGAACTGATATTTCAT
1 ATGAACTGTTATTTTGT
* * *
37479178 ATGAATTATTATTTTGC
1 ATGAACTGTTATTTTGT
* * * *
37479195 ATGAGCTCTCATTTGGT
1 ATGAACTGTTATTTTGT
* *
37479212 AAGAACTGTTATTTTAT
1 ATGAACTGTTATTTTGT
37479229 ATGAAC
1 ATGAAC
37479235 AAATGTTTTA
Statistics
Matches: 65, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 65 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.45
Consensus pattern (17 bp):
ATGAACTGTTATTTTGT
Found at i:37481886 original size:24 final size:23
Alignment explanation
Indices: 37481840--37481889 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
37481830 CGATTTATCC
*
37481840 CATTTTTACTGGCAGCTTGTCTG
1 CATTTTTACTGGCAGATTGTCTG
* *
37481863 CATTTTTACTGTCAGAATTTTCTG
1 CATTTTTACTGGCAG-ATTGTCTG
37481887 CAT
1 CAT
37481890 ATTGTTATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (23 bp):
CATTTTTACTGGCAGATTGTCTG
Found at i:37485180 original size:6 final size:6
Alignment explanation
Indices: 37485166--37485200 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
37485156 TAGAATGGTT
*
37485166 TTTTAA TTTTCA TTTTCA TTTTCA TTTTCA TTTTC
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTC
37485201 TTGTGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTCA
Found at i:37493904 original size:23 final size:23
Alignment explanation
Indices: 37493878--37493926 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
37493868 TGAAAAGTTA
*
37493878 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAAGAT
*
37493901 GAAGATTGAAGAGACTTGAAGAT
1 GAAGAGTGAAGAGACTTGAAGAT
37493924 GAA
1 GAA
37493927 AAGTTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.04, G:0.31, T:0.20
Consensus pattern (23 bp):
GAAGAGTGAAGAGACTTGAAGAT
Found at i:37496022 original size:32 final size:32
Alignment explanation
Indices: 37495986--37496049 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
37495976 ACTTTTTATC
*
37495986 TTCAAGTCTCTTCACATTAGTAACTCTTCATA
1 TTCAAGTCTCTTCACATTACTAACTCTTCATA
* *
37496018 TTCAAGTCTCTTCACATTTCTAACTTTTCATA
1 TTCAAGTCTCTTCACATTACTAACTCTTCATA
37496050 ATTTATTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.05, T:0.44
Consensus pattern (32 bp):
TTCAAGTCTCTTCACATTACTAACTCTTCATA
Found at i:37496028 original size:16 final size:16
Alignment explanation
Indices: 37495986--37496035 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
37495976 ACTTTTTATC
37495986 TTCAAGTCTCTTCACA
1 TTCAAGTCTCTTCACA
*
37496002 TT--AGTAACTCTTCATA
1 TTCAAGT--CTCTTCACA
37496018 TTCAAGTCTCTTCACA
1 TTCAAGTCTCTTCACA
37496034 TT
1 TT
37496036 TCTAACTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 3 0.11
16 22 0.79
18 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (16 bp):
TTCAAGTCTCTTCACA
Found at i:37500389 original size:42 final size:41
Alignment explanation
Indices: 37500343--37500445 Score: 135
Period size: 39 Copynumber: 2.6 Consensus size: 41
37500333 TAACTCTTTA
*
37500343 TATAGGAGTTGTAAGTGACTATTCATCTACATCAC-TAAATGC
1 TATAGGAGTTGT--GTGACTATTCATCTACATAACTTAAATGC
*
37500385 TATAGGAG-T-TGTGACTATTCATTTACATAACTTAAATGC
1 TATAGGAGTTGTGTGACTATTCATCTACATAACTTAAATGC
37500424 TATAGGAG-T-TGTGACTATTCAT
1 TATAGGAGTTGTGTGACTATTCAT
37500446 GCATGAGTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
38 19 0.33
39 29 0.50
40 1 0.02
41 1 0.02
42 8 0.14
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (41 bp):
TATAGGAGTTGTGTGACTATTCATCTACATAACTTAAATGC
Found at i:37500412 original size:38 final size:39
Alignment explanation
Indices: 37500357--37500445 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
37500347 GGAGTTGTAA
*
37500357 GTGACTATTCATCTACATCAC-TAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATGCTATAGGAGTT
*
37500395 GTGACTATTCATTTACATAACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATGCTATAGGAGTT
37500434 GTGACTATTCAT
1 GTGACTATTCAT
37500446 GCATGAGTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 19 0.40
39 29 0.60
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (39 bp):
GTGACTATTCATCTACATAACTTAAATGCTATAGGAGTT
Found at i:37500503 original size:32 final size:32
Alignment explanation
Indices: 37500467--37500530 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
37500457 ACTTTTTATC
*
37500467 TTCAAGTCTCTTCACATTAGTAACTCTTCATA
1 TTCAAGTCTCTTCACATTACTAACTCTTCATA
* *
37500499 TTCAAGTCTCTTCACATTTCTAACTTTTCATA
1 TTCAAGTCTCTTCACATTACTAACTCTTCATA
37500531 ATTTATTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.05, T:0.44
Consensus pattern (32 bp):
TTCAAGTCTCTTCACATTACTAACTCTTCATA
Found at i:37500509 original size:16 final size:16
Alignment explanation
Indices: 37500467--37500516 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
37500457 ACTTTTTATC
37500467 TTCAAGTCTCTTCACA
1 TTCAAGTCTCTTCACA
*
37500483 TT--AGTAACTCTTCATA
1 TTCAAGT--CTCTTCACA
37500499 TTCAAGTCTCTTCACA
1 TTCAAGTCTCTTCACA
37500515 TT
1 TT
37500517 TCTAACTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 3 0.11
16 22 0.79
18 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (16 bp):
TTCAAGTCTCTTCACA
Found at i:37503454 original size:28 final size:28
Alignment explanation
Indices: 37503408--37503476 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
37503398 CAGCCCAAAT
* *
37503408 CAATAACAG-AACAATGTGGGCTTTAGCC
1 CAAT-ACAGAAACAAGGTGGGCCTTAGCC
* *
37503436 CACTATAGAAACAAGGTGGGCCTTAGCC
1 CAATACAGAAACAAGGTGGGCCTTAGCC
37503464 CAATACAGAAACA
1 CAATACAGAAACA
37503477 GTATGCAGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 3 0.09
28 31 0.91
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.17
Consensus pattern (28 bp):
CAATACAGAAACAAGGTGGGCCTTAGCC
Found at i:37503672 original size:27 final size:27
Alignment explanation
Indices: 37503635--37503699 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
37503625 AGCAGAGCTG
37503635 CCAGT-ACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
37503661 CCAGTAACAGTATATGTGGCAGAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
37503688 CCTGTAACAGTA
1 CCAGTAACAGTA
37503700 CTTCCTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 5 0.14
27 31 0.86
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:37503923 original size:27 final size:26
Alignment explanation
Indices: 37503893--37503954 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
37503883 AAGGGCAAAA
*
37503893 CGGTCATTTTACCCTATAAGGGTATTT
1 CGGTAATTTTACCCTAT-AGGGTATTT
**
37503920 CGGTAATCCTACCCTATAGGGTATTT
1 CGGTAATTTTACCCTATAGGGTATTT
37503946 CGGTAATTT
1 CGGTAATTT
37503955 CACAAATCGG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (26 bp):
CGGTAATTTTACCCTATAGGGTATTT
Found at i:37503947 original size:26 final size:27
Alignment explanation
Indices: 37503902--37503952 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
37503892 ACGGTCATTT
37503902 TACCCTATAAGGGTATTTCGGTAATCC
1 TACCCTATAAGGGTATTTCGGTAATCC
37503929 TACCCTAT-AGGGTATTTCGGTAAT
1 TACCCTATAAGGGTATTTCGGTAAT
37503953 TTCACAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
TACCCTATAAGGGTATTTCGGTAATCC
Found at i:37506979 original size:29 final size:28
Alignment explanation
Indices: 37506922--37506987 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
37506912 TACATAGTAC
*
37506922 ATATATATGTGTGGTTTTGCTATATATA
1 ATATATATGTGTGGTTTTGCTATAGATA
*
37506950 ATATGTATGTGTAGGTTTT-CTTATAGATA
1 ATATATATGTGT-GGTTTTGC-TATAGATA
37506979 ATATATATG
1 ATATATATG
37506988 CGTTTATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 12 0.36
29 21 0.64
ACGTcount: A:0.30, C:0.03, G:0.18, T:0.48
Consensus pattern (28 bp):
ATATATATGTGTGGTTTTGCTATAGATA
Found at i:37507384 original size:18 final size:17
Alignment explanation
Indices: 37507352--37507421 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 17
37507342 CCATGTTAAC
* *
37507352 TTGGTGAATTATATTAT
1 TTGGTGAACTGTATTAT
37507369 TCTGGTGAACTGTATTTAT
1 T-TGGTGAACTGTA-TTAT
* **
37507388 TTAGTGATTTGTATTAGT
1 TTGGTGAACTGTATTA-T
*
37507406 ATGGTGAACTGTATTA
1 TTGGTGAACTGTATTA
37507422 ATTTTCCAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 4 0.10
18 32 0.78
19 5 0.12
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.49
Consensus pattern (17 bp):
TTGGTGAACTGTATTAT
Found at i:37508111 original size:17 final size:17
Alignment explanation
Indices: 37508072--37508120 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
37508062 TTATGATGGA
**
37508072 GTATGAACTGTTATTTT
1 GTATGAACTGTTATTCG
* *
37508089 GCATGAATTGTTATTCG
1 GTATGAACTGTTATTCG
*
37508106 GTATGAACTGATATT
1 GTATGAACTGTTATT
37508121 TCATTTGAAC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (17 bp):
GTATGAACTGTTATTCG
Found at i:37508795 original size:20 final size:20
Alignment explanation
Indices: 37508770--37508808 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
37508760 GCATGAGATG
37508770 TAACATAGAATTTGGTTAAT
1 TAACATAGAATTTGGTTAAT
37508790 TAACATAGAATTTGGTTAA
1 TAACATAGAATTTGGTTAA
37508809 GTCATGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
TAACATAGAATTTGGTTAAT
Found at i:37509397 original size:15 final size:15
Alignment explanation
Indices: 37509377--37509406 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37509367 AATTTCATGC
37509377 TTCAATCACCATGTT
1 TTCAATCACCATGTT
37509392 TTCAATCACCATGTT
1 TTCAATCACCATGTT
37509407 ATCACTTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
TTCAATCACCATGTT
Found at i:37520530 original size:15 final size:15
Alignment explanation
Indices: 37520506--37520535 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37520496 ATTTTCATTC
*
37520506 TTCAATCACCATGTT
1 TTCAAACACCATGTT
37520521 TTCAAACACCATGTT
1 TTCAAACACCATGTT
37520536 ATCAGTTAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (15 bp):
TTCAAACACCATGTT
Found at i:37537417 original size:107 final size:107
Alignment explanation
Indices: 37537223--37537418 Score: 252
Period size: 107 Copynumber: 1.8 Consensus size: 107
37537213 ATGGTTTTTT
* * * * * * *
37537223 TCCTATGTGCACAGGTTAGCTTGAAACATATGTATTGAAGGATATGTATTTATTATTTGTAGAAG
1 TCCTATGTACAAAGGTAAGCCTGAAACATAAGGATTGAAGGATATGCATTTATTATTTGTAGAAG
*
37537288 TAAATTCAAAAATGGAAACTTTATTTTATGTTCCGTGTATCA
66 TAAATTCAAAAATAGAAACTTTATTTTATGTTCCGTGTATCA
* *
37537330 TCCTATGTACAAAGGTAAGCCTGAAACATAAGCGA-TGAATGATATGCATTTATTGTTTGTAGAA
1 TCCTATGTACAAAGGTAAGCCTGAAACATAAG-GATTGAAGGATATGCATTTATTATTTGTAGAA
* *
37537394 GTAAA-TCGAAAAGTAGAATCTTTAT
65 GTAAATTC-AAAAATAGAAACTTTAT
37537419 ATTAGGACCG
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
106 2 0.03
107 72 0.96
108 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (107 bp):
TCCTATGTACAAAGGTAAGCCTGAAACATAAGGATTGAAGGATATGCATTTATTATTTGTAGAAG
TAAATTCAAAAATAGAAACTTTATTTTATGTTCCGTGTATCA
Found at i:37542998 original size:21 final size:22
Alignment explanation
Indices: 37542963--37543013 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
37542953 GCTTTTATTC
* *
37542963 AAAACATGCGATTTAATGGCTA
1 AAAACATGCGATTTAAAGACTA
*
37542985 AAAACATG-GTTTTAAAGACTA
1 AAAACATGCGATTTAAAGACTA
37543006 AATAACAT
1 AA-AACAT
37543014 TTAAAACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (22 bp):
AAAACATGCGATTTAAAGACTA
Found at i:37545722 original size:34 final size:34
Alignment explanation
Indices: 37545679--37545750 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
37545669 GCAGAGATAC
37545679 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
1 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
37545713 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
1 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
37545747 TTAC
1 TTAC
37545751 AAGCTAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (34 bp):
TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
Found at i:37555019 original size:27 final size:27
Alignment explanation
Indices: 37554954--37555024 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
37554944 TCGCTCGAGG
*
37554954 TGACTGTTATACCCCTATGGGATAAAA
1 TGACTGTTATACCCCTAAGGGATAAAA
* **
37554981 TGACCGAAATACCCCTACAGGG-TAAAA
1 TGACTGTTATACCCCTA-AGGGATAAAA
37555008 TGACTGTTATACCCCTA
1 TGACTGTTATACCCCTA
37555025 GGAATTGAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 33 0.92
28 3 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (27 bp):
TGACTGTTATACCCCTAAGGGATAAAA
Found at i:37560443 original size:18 final size:16
Alignment explanation
Indices: 37560418--37560460 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
37560408 TTCTTTCCAT
*
37560418 AGTTGTTCTTAATATAG
1 AGTTGTTCTGAATA-AG
*
37560435 AGATTGTTCCGAATAAG
1 AG-TTGTTCTGAATAAG
37560452 AGTTGTTCT
1 AGTTGTTCT
37560461 ATAGTGATGC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 6 0.27
17 6 0.27
18 10 0.45
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (16 bp):
AGTTGTTCTGAATAAG
Found at i:37560749 original size:16 final size:16
Alignment explanation
Indices: 37560728--37560760 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
37560718 TCTTCGATCG
*
37560728 ACAACTGTTCTGAACA
1 ACAACTATTCTGAACA
37560744 ACAACTATTCTGAACA
1 ACAACTATTCTGAACA
37560760 A
1 A
37560761 GAGTTGTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (16 bp):
ACAACTATTCTGAACA
Found at i:37567665 original size:17 final size:16
Alignment explanation
Indices: 37567645--37567686 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
37567635 ACAGACTTAT
*
37567645 ATTTTTTTTTACTCAAA
1 ATTTTTTTTCAC-CAAA
*
37567662 ATTTTTTGTCACCAAA
1 ATTTTTTTTCACCAAA
37567678 ATTTTTTTT
1 ATTTTTTTT
37567687 ATAGATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTTTTTTTCACCAAA
Found at i:37568554 original size:32 final size:32
Alignment explanation
Indices: 37568518--37568591 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
37568508 AATAGTCTTT
*
37568518 GGTGTGAACAT-ATGGACTTGAACGGTCCCTTG
1 GGTGTGAACATCA-GGACTTGAACGGTCCATTG
* *
37568550 GGTGTGAACATCAGGAGTTGGACGGTCCATTG
1 GGTGTGAACATCAGGACTTGAACGGTCCATTG
*
37568582 TGTGTGAACA
1 GGTGTGAACA
37568592 AAGGTAGCTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 36 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (32 bp):
GGTGTGAACATCAGGACTTGAACGGTCCATTG
Found at i:37569453 original size:20 final size:20
Alignment explanation
Indices: 37569430--37569533 Score: 86
Period size: 20 Copynumber: 5.2 Consensus size: 20
37569420 TAGGGGCACG
*
37569430 AAAGTGCGATCAGGGGTACC
1 AAAGTGCAATCAGGGGTACC
* * * **
37569450 AAAGTACAATCAGTGGCATG
1 AAAGTGCAATCAGGGGTACC
*
37569470 AGAGTGCAATCAGGGGT-CC
1 AAAGTGCAATCAGGGGTACC
* * *
37569489 AAAGTACAAACAGGGG-AAC
1 AAAGTGCAATCAGGGGTACC
37569508 ATAAGTGCAATCAGGGGTACC
1 A-AAGTGCAATCAGGGGTACC
*
37569529 GAAGT
1 AAAGT
37569534 ACAAATAGTG
Statistics
Matches: 61, Mismatches: 20, Indels: 6
0.70 0.23 0.07
Matches are distributed among these distances:
19 15 0.25
20 44 0.72
21 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.31, T:0.15
Consensus pattern (20 bp):
AAAGTGCAATCAGGGGTACC
Found at i:37569555 original size:40 final size:40
Alignment explanation
Indices: 37569432--37569560 Score: 167
Period size: 40 Copynumber: 3.2 Consensus size: 40
37569422 GGGGCACGAA
*
37569432 AGTGCGATCAGGGGTACCAAAGTAC-AATCAGTGGCATGAG
1 AGTGCAATCAGGGGTACCAAAGTACAAAT-AGTGGCATGAG
* *
37569472 AGTGCAATCAGGGGT-CCAAAGTACAAACAGGGGAACAT-A-
1 AGTGCAATCAGGGGTACCAAAGTACAAATAGTGG--CATGAG
*
37569511 AGTGCAATCAGGGGTACCGAAGTACAAATAGTGGCATGAG
1 AGTGCAATCAGGGGTACCAAAGTACAAATAGTGGCATGAG
37569551 AGTGCAATCA
1 AGTGCAATCA
37569561 TTCAATAATT
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
38 3 0.04
39 29 0.38
40 42 0.55
41 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.30, T:0.16
Consensus pattern (40 bp):
AGTGCAATCAGGGGTACCAAAGTACAAATAGTGGCATGAG
Found at i:37581042 original size:21 final size:21
Alignment explanation
Indices: 37581018--37581081 Score: 101
Period size: 21 Copynumber: 3.0 Consensus size: 21
37581008 CGAGCATGCC
37581018 AACAAAAGCTCATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
* *
37581039 AACAGAAGCTCATAATAGCTG
1 AACAAAAGCTCATAAGAGCTG
*
37581060 AACAAAAGCTCTTAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
37581081 A
1 A
37581082 TCCACCCAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.17
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTG
Found at i:37583485 original size:46 final size:46
Alignment explanation
Indices: 37583386--37583534 Score: 181
Period size: 46 Copynumber: 3.2 Consensus size: 46
37583376 TACCTATTTG
* * * * *
37583386 GGTTAAACCTACATGAATGATGAATCATATTGTCTGGTCACCCGTTAA
1 GGTTGAACCTACATGAAT-CTG-ATAATAGTGTCTGTTCACCCGTTAA
*
37583434 GGTTGAACCTACATGAATCTGATAATAGTGTCTGTTCACCCATTAA
1 GGTTGAACCTACATGAATCTGATAATAGTGTCTGTTCACCCGTTAA
* * * * *
37583480 AGTTGAACCTACACGAATCAGATAATAGTGCCTGTTCACCCGTTAG
1 GGTTGAACCTACATGAATCTGATAATAGTGTCTGTTCACCCGTTAA
37583526 GGTTGAACC
1 GGTTGAACC
37583535 CAAACAACAA
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
46 69 0.78
47 2 0.02
48 17 0.19
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (46 bp):
GGTTGAACCTACATGAATCTGATAATAGTGTCTGTTCACCCGTTAA
Found at i:37585139 original size:23 final size:23
Alignment explanation
Indices: 37585094--37585141 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
37585084 CAGCAATAAC
* *
37585094 ATAGTTTGATCCTCGTCAATGAT
1 ATAGCTTGATCCTCATCAATGAT
* *
37585117 ATAGCTTGATCCTTATCAGTGAT
1 ATAGCTTGATCCTCATCAATGAT
37585140 AT
1 AT
37585142 CTACATCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (23 bp):
ATAGCTTGATCCTCATCAATGAT
Found at i:37592358 original size:9 final size:9
Alignment explanation
Indices: 37592344--37592380 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
37592334 TATAGTTTGA
37592344 TATTCGAAT
1 TATTCGAAT
37592353 TATTCGAAT
1 TATTCGAAT
*
37592362 TATTCGAGT
1 TATTCGAAT
37592371 TATTCGAAT
1 TATTCGAAT
37592380 T
1 T
37592381 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37594487 original size:12 final size:12
Alignment explanation
Indices: 37594472--37594498 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37594462 TTCTAAATGT
37594472 TAATTCTAAGAC
1 TAATTCTAAGAC
37594484 TAATTCTAAGAC
1 TAATTCTAAGAC
37594496 TAA
1 TAA
37594499 GCATATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (12 bp):
TAATTCTAAGAC
Found at i:37597011 original size:23 final size:23
Alignment explanation
Indices: 37596981--37597036 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
37596971 GGACCCAAGA
*
37596981 TGAATTAATTCTGAATCCGTTTT
1 TGAATTAATTCTGAATCCGTTTG
*
37597004 TGAATTAATTTTGAATCCGTTTG
1 TGAATTAATTCTGAATCCGTTTG
37597027 TGAA-TAATTC
1 TGAATTAATTC
37597037 ACTTGTGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (23 bp):
TGAATTAATTCTGAATCCGTTTG
Found at i:37597863 original size:19 final size:19
Alignment explanation
Indices: 37597841--37597880 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37597831 ATTAATTTTG
* *
37597841 ATCAAGTAAATTTAAATTA
1 ATCAAATAAATTAAAATTA
*
37597860 ATCAAATTAATTAAAATTA
1 ATCAAATAAATTAAAATTA
37597879 AT
1 AT
37597881 ATGATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:37603948 original size:21 final size:20
Alignment explanation
Indices: 37603924--37603971 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
37603914 CATTTCACTA
37603924 TTATGTCTTTTGTATTTTTTT
1 TTAT-TCTTTTGTATTTTTTT
37603945 TTA-TCTTTTGTATTTTTTT
1 TTATTCTTTTGTATTTTTTT
37603964 TTA-TCTTT
1 TTATTCTTT
37603972 CATATTTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 24 0.89
21 3 0.11
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.77
Consensus pattern (20 bp):
TTATTCTTTTGTATTTTTTT
Found at i:37603953 original size:19 final size:19
Alignment explanation
Indices: 37603929--37603971 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
37603919 CACTATTATG
37603929 TCTTTTGTATTTTTTTTTA
1 TCTTTTGTATTTTTTTTTA
37603948 TCTTTTGTATTTTTTTTTA
1 TCTTTTGTATTTTTTTTTA
37603967 TCTTT
1 TCTTT
37603972 CATATTTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.07, G:0.05, T:0.79
Consensus pattern (19 bp):
TCTTTTGTATTTTTTTTTA
Found at i:37603979 original size:18 final size:19
Alignment explanation
Indices: 37603936--37603979 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
37603926 ATGTCTTTTG
**
37603936 TATTTTTTTTTATCTTTTG
1 TATTTTTTTTTATCTTTCA
37603955 TATTTTTTTTTATCTTTCA
1 TATTTTTTTTTATCTTTCA
37603974 TATTTT
1 TATTTT
37603980 GCATGCATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (19 bp):
TATTTTTTTTTATCTTTCA
Found at i:37605634 original size:37 final size:36
Alignment explanation
Indices: 37605583--37605658 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
37605573 ATTTCAAAGA
*
37605583 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
37605619 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
37605656 TAA
1 TAA
37605659 AGTGATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:37608180 original size:19 final size:20
Alignment explanation
Indices: 37608156--37608196 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
37608146 AGTTTAATTA
37608156 AACTT-AATTAATCAAGGTT
1 AACTTAAATTAATCAAGGTT
*
37608175 AACTTAAATTAATCAAGTTT
1 AACTTAAATTAATCAAGGTT
37608195 AA
1 AA
37608197 TTATGATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (20 bp):
AACTTAAATTAATCAAGGTT
Found at i:37610443 original size:30 final size:30
Alignment explanation
Indices: 37610409--37610504 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
37610399 ATTTATCTCG
37610409 ATATTAATATGAGATATTAAATTTAATTCA
1 ATATTAATATGAGATATTAAATTTAATTCA
* * * **
37610439 ATATTTATCT-AGAAAGGTT-TTTATTAATTCA
1 ATATTAATATGAGATA--TTAAAT-TTAATTCA
* *
37610470 ATATTAATTTGAGATATTAAATTTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTCA
37610500 ATATT
1 ATATT
37610505 TATCTAGATA
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
29 4 0.08
30 23 0.46
31 19 0.38
32 4 0.08
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (30 bp):
ATATTAATATGAGATATTAAATTTAATTCA
Found at i:37610522 original size:61 final size:60
Alignment explanation
Indices: 37610409--37610526 Score: 184
Period size: 61 Copynumber: 1.9 Consensus size: 60
37610399 ATTTATCTCG
37610409 ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGAAAGGTTTTTATTAATTCA
1 ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGAAA-GTTTTTATTAATTCA
* *
37610470 ATATTAATTTGAGATATTAAATTTAATTTAATATTTATCTAGATAA-TATTTTATTAA
1 ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGA-AAGT-TTTTATTAA
37610527 ATTAGTATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
60 1 0.02
61 50 0.94
62 2 0.04
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (60 bp):
ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGAAAGTTTTTATTAATTCA
Found at i:37612855 original size:32 final size:32
Alignment explanation
Indices: 37612814--37612897 Score: 123
Period size: 32 Copynumber: 2.6 Consensus size: 32
37612804 TTCCAGATTA
* * *
37612814 GCCTTGCCCGTGTAGCCCATACGCCCAATCTG
1 GCCTAGCCCGTGTGGCCCATACACCCAATCTG
*
37612846 GCCTAGCCCGTGTGGCCCACACACCCAATCTG
1 GCCTAGCCCGTGTGGCCCATACACCCAATCTG
*
37612878 GCCTAGCTCGTGTGGCCCAT
1 GCCTAGCCCGTGTGGCCCAT
37612898 TACATAGCCG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.15, C:0.40, G:0.24, T:0.20
Consensus pattern (32 bp):
GCCTAGCCCGTGTGGCCCATACACCCAATCTG
Found at i:37617148 original size:45 final size:44
Alignment explanation
Indices: 37617073--37617248 Score: 196
Period size: 45 Copynumber: 3.9 Consensus size: 44
37617063 TACACGGTTG
* * * *
37617073 ATCAGCACATAGC-ACCACCCTTATAGTCAATGATACTCGGTGGA
1 ATCAGCACACAACAACCA-CCTTATAATCAATGATACCCGGTGGA
* * * * *
37617117 ATTAGCACATAGA-AACCACCTCCATAATCAAT-AGTACCCGATAGA
1 ATCAGCACACA-ACAACCACCT-TATAATCAATGA-TACCCGGTGGA
37617162 ATCAGCACACAACAACCACCTTTATAATCAATGATACCCGGTGGA
1 ATCAGCACACAACAACCACC-TTATAATCAATGATACCCGGTGGA
37617207 ATCAGCACACAACAACCACCGTTATAATCAATGATACCCGGT
1 ATCAGCACACAACAACCACC-TTATAATCAATGATACCCGGT
37617249 ATACGTAGTA
Statistics
Matches: 112, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
44 15 0.13
45 95 0.85
46 2 0.02
ACGTcount: A:0.38, C:0.28, G:0.14, T:0.20
Consensus pattern (44 bp):
ATCAGCACACAACAACCACCTTATAATCAATGATACCCGGTGGA
Found at i:37618720 original size:28 final size:28
Alignment explanation
Indices: 37618680--37618733 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
37618670 GAATAAGTAT
37618680 GTGCAGTTTCTGCAAGCGTGGCAGGTTA
1 GTGCAGTTTCTGCAAGCGTGGCAGGTTA
*
37618708 GTGCGGTTTCTGCAAGCGTGGCAGGT
1 GTGCAGTTTCTGCAAGCGTGGCAGGT
37618734 CAGTTGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.15, C:0.19, G:0.39, T:0.28
Consensus pattern (28 bp):
GTGCAGTTTCTGCAAGCGTGGCAGGTTA
Found at i:37619246 original size:20 final size:20
Alignment explanation
Indices: 37619221--37619259 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
37619211 CATAAGTTTT
37619221 TAATTTCATT-CAATTTAGTC
1 TAATTT-ATTACAATTTAGTC
37619241 TAATTTATTACAATTTAGT
1 TAATTTATTACAATTTAGT
37619260 TATTGACCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.51
Consensus pattern (20 bp):
TAATTTATTACAATTTAGTC
Found at i:37621625 original size:36 final size:36
Alignment explanation
Indices: 37621585--37621665 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
37621575 AATTTCAAGG
* *
37621585 TGGCTTTGTGGA-GAGATGTTGTTACAAATGAAATAT
1 TGGCTTTGTGGACGA-ATGTTATTACAAATGAAATAA
** **
37621621 TGGCTTTACGGACGAATGTTATTTGAAATGAAATAA
1 TGGCTTTGTGGACGAATGTTATTACAAATGAAATAA
37621657 TGGCTTTGT
1 TGGCTTTGT
37621666 AGAGGTATGA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
36 34 0.94
37 2 0.06
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (36 bp):
TGGCTTTGTGGACGAATGTTATTACAAATGAAATAA
Found at i:37621981 original size:18 final size:18
Alignment explanation
Indices: 37621960--37622011 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
37621950 TTAATGTGCG
*
37621960 AGCTATGTCAAATGTGTA
1 AGCTAAGTCAAATGTGTA
* *
37621978 AGCTAAGT-TAATGTGTG
1 AGCTAAGTCAAATGTGTA
*
37621995 AGCTAAATCAAATGTGT
1 AGCTAAGTCAAATGTGT
37622012 GAGTTGTGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (18 bp):
AGCTAAGTCAAATGTGTA
Found at i:37622012 original size:18 final size:18
Alignment explanation
Indices: 37621952--37622014 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
37621942 TAAATAAGTT
* *
37621952 AATGTGCGAGCTATGTCA
1 AATGTGTGAGCTAAGTCA
* *
37621970 AATGTGTAAGCTAAGT-T
1 AATGTGTGAGCTAAGTCA
*
37621987 AATGTGTGAGCTAAATCA
1 AATGTGTGAGCTAAGTCA
37622005 AATGTGTGAG
1 AATGTGTGAG
37622015 TTGTGGAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (18 bp):
AATGTGTGAGCTAAGTCA
Found at i:37622043 original size:17 final size:17
Alignment explanation
Indices: 37622004--37622037 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37621994 GAGCTAAATC
*
37622004 AAATGTGTGAGTTGTGG
1 AAATGTGTGAGTAGTGG
37622021 AAATGTGTGAGTAGTGG
1 AAATGTGTGAGTAGTGG
37622038 CGATGTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.32
Consensus pattern (17 bp):
AAATGTGTGAGTAGTGG
Found at i:37633906 original size:12 final size:12
Alignment explanation
Indices: 37633871--37633912 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
37633861 TGCAAATGGA
37633871 TCATTTCCATTT
1 TCATTTCCATTT
*
37633883 TCATTAT-AATTT
1 TCATT-TCCATTT
37633895 TCATTTCCATTT
1 TCATTTCCATTT
*
37633907 CCATTT
1 TCATTT
37633913 TTGGAACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.57
Consensus pattern (12 bp):
TCATTTCCATTT
Done.