Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 13 of 170
Found at i:3822521 original size:21 final size:22
Alignment explanation
Indices: 3822491--3822553 Score: 101
Period size: 21 Copynumber: 2.9 Consensus size: 22
3822481 TAATAAATTA
*
3822491 GTTTAGGGTTTTTAAGTTAAGG
1 GTTTAAGGTTTTTAAGTTAAGG
3822513 G-TTAAGGTTTTTAAGTTAAGG
1 GTTTAAGGTTTTTAAGTTAAGG
*
3822534 GTTTAGGGTTTTTAAGTTAA
1 GTTTAAGGTTTTTAAGTTAA
3822554 AGTGTTAGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 20 0.53
22 18 0.47
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (22 bp):
GTTTAAGGTTTTTAAGTTAAGG
Found at i:3822561 original size:22 final size:21
Alignment explanation
Indices: 3822493--3822565 Score: 110
Period size: 22 Copynumber: 3.4 Consensus size: 21
3822483 ATAAATTAGT
3822493 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
3822514 TTAAGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
3822535 TTTAGGGTTTTTAAGTTAAAGTG
1 -TTAGGGTTTTTAAGTT-AAGGG
3822558 TTAGGGTT
1 TTAGGGTT
3822566 AGGGTTAGGG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
21 20 0.43
22 23 0.49
23 4 0.09
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGG
Found at i:3822687 original size:108 final size:108
Alignment explanation
Indices: 3822560--3822773 Score: 369
Period size: 108 Copynumber: 2.0 Consensus size: 108
3822550 TTAAAGTGTT
* *
3822560 AGGGTTAGGGTTAGGGTTTTTGTTAGGGTTTGTCAATT-AA-TATCAAATTTTAATTATAATTTA
1 AGGGTTAAGGTTAGGGTTTTTGTTAGGGTTTGTCAATTAAATTAT-AAA-TTTAATTATAAATTA
3822623 TAAATTTATAAATTTTTAATAAATTAGTCTAGGGTTTTTAAGTTA
64 TAAATTTATAAATTTTTAATAAATTAGTCTAGGGTTTTTAAGTTA
3822668 AGGGTTAAGGTTAGGGTTTTTGTTAGGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATA
1 AGGGTTAAGGTTAGGGTTTTTGTTAGGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATA
*
3822733 AATTTATAAATTTTTAATAAATTAGTTTAGGGTTTTTAAGT
66 AATTTATAAATTTTTAATAAATTAGTCTAGGGTTTTTAAGT
3822774 AATACCTCAA
Statistics
Matches: 101, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
108 93 0.92
109 5 0.05
110 3 0.03
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (108 bp):
AGGGTTAAGGTTAGGGTTTTTGTTAGGGTTTGTCAATTAAATTATAAATTTAATTATAAATTATA
AATTTATAAATTTTTAATAAATTAGTCTAGGGTTTTTAAGTTA
Found at i:3822717 original size:7 final size:7
Alignment explanation
Indices: 3822705--3822744 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
3822695 GTTTGTCAAT
3822705 TAAATTA
1 TAAATTA
3822712 TAAATT-
1 TAAATTA
3822718 T-AATTA
1 TAAATTA
3822724 TAAATTA
1 TAAATTA
3822731 TAAATTTA
1 TAAA-TTA
3822739 TAAATT
1 TAAATT
3822745 TTTAATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 4 0.13
6 2 0.07
7 17 0.57
8 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TAAATTA
Found at i:3822717 original size:12 final size:12
Alignment explanation
Indices: 3822702--3822744 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
3822692 AGGGTTTGTC
3822702 AATTAAATTATA
1 AATTAAATTATA
*
3822714 AATTTAATTATA
1 AATTAAATTATA
3822726 AATTATAAATTTATA
1 AA-T-TAAA-TTATA
3822741 AATT
1 AATT
3822745 TTTAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 13 0.50
13 2 0.08
14 4 0.15
15 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AATTAAATTATA
Found at i:3823259 original size:17 final size:19
Alignment explanation
Indices: 3823227--3823269 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
3823217 GACTCGAAAA
* *
3823227 AGGAAACATATAA-GGGTT
1 AGGATACATATAAGGGGCT
3823245 AGGATACAT-TAAGGGGCT
1 AGGATACATATAAGGGGCT
3823263 AGGATAC
1 AGGATAC
3823270 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (19 bp):
AGGATACATATAAGGGGCT
Found at i:3825130 original size:11 final size:11
Alignment explanation
Indices: 3825114--3825179 Score: 62
Period size: 11 Copynumber: 5.9 Consensus size: 11
3825104 TTAAATATGG
3825114 ATTTGAGAGAA
1 ATTTGAGAGAA
* *
3825125 ATTTGAAAGGA
1 ATTTGAGAGAA
* *
3825136 TTTTGAGAGCA
1 ATTTGAGAGAA
3825147 ATTTGAGAGAA
1 ATTTGAGAGAA
*
3825158 ACTTGAGA-AA
1 ATTTGAGAGAA
3825168 ATAATTGAGAGA
1 AT--TTGAGAGA
3825180 GGATTAGTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
10 3 0.07
11 33 0.77
12 6 0.14
13 1 0.02
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.27
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:3825539 original size:28 final size:29
Alignment explanation
Indices: 3825475--3825539 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 29
3825465 GTTTTCAGGG
*
3825475 AAAAGGGCCCATTCCGGTAAATAATAAAA
1 AAAAGGGCCCATTCCAGTAAATAATAAAA
* ** * *
3825504 TACCGGGCCCATTTCAGTAAAT-TTAAAA
1 AAAAGGGCCCATTCCAGTAAATAATAAAA
3825532 AAAAGGGC
1 AAAAGGGC
3825540 TTTTAATGGT
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (29 bp):
AAAAGGGCCCATTCCAGTAAATAATAAAA
Found at i:3825739 original size:18 final size:18
Alignment explanation
Indices: 3825718--3825760 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
3825708 ATGATATCGG
*
3825718 TATTGATGATTGTGACGA
1 TATTGATGATAGTGACGA
* *
3825736 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
3825754 TATTGAT
1 TATTGAT
3825761 CGTGTCCTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:3826457 original size:31 final size:29
Alignment explanation
Indices: 3826379--3826459 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 29
3826369 TAGTTGACGG
3826379 AGAAAAAGTTCAAGTACCAATCTGAGACA
1 AGAAAAAGTTCAAGTACCAATCTGAGACA
* * *
3826408 A-AAAAAATCTTAAATACCAATCTAGGAGA-A
1 AGAAAAAGT-TCAAGTACCAATCT--GAGACA
3826438 ATGAAAAAGTTCAAGTACCAAT
1 A-GAAAAAGTTCAAGTACCAAT
3826460 TTATATTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
28 6 0.15
29 13 0.32
30 2 0.05
31 14 0.34
32 6 0.15
ACGTcount: A:0.52, C:0.15, G:0.14, T:0.20
Consensus pattern (29 bp):
AGAAAAAGTTCAAGTACCAATCTGAGACA
Found at i:3827493 original size:16 final size:17
Alignment explanation
Indices: 3827474--3827514 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
3827464 TATTAGTTAT
3827474 ATAAATTTAATT-TAAA
1 ATAAATTTAATTATAAA
*
3827490 ATAACTTTAATTATAAA
1 ATAAATTTAATTATAAA
3827507 ATCAAATT
1 AT-AAATT
3827515 GTAAATCCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 11 0.52
17 6 0.29
18 4 0.19
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAAATTTAATTATAAA
Found at i:3832737 original size:18 final size:19
Alignment explanation
Indices: 3832711--3832746 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
3832701 AAAGTATTCA
3832711 AATTCAACCCAA-AATAAT
1 AATTCAACCCAATAATAAT
*
3832729 AATTTAACCCAATAATAA
1 AATTCAACCCAATAATAA
3832747 CTATTGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (19 bp):
AATTCAACCCAATAATAAT
Found at i:3835540 original size:190 final size:190
Alignment explanation
Indices: 3835207--3835587 Score: 566
Period size: 190 Copynumber: 2.0 Consensus size: 190
3835197 TTATATTGTG
* * * ** * *
3835207 GTTACTAAGTGGAATTGTAACGCCCCATACCCGACCCAATCGTTGGGTCTACGTACCGAATGCTA
1 GTTACTAAGCGGAATTGTAACACCCCATACCCAACCCAATCCCTGAGTCTAAGTACCGAATGCTA
* *
3835272 CAAGAACCCGTTTAATTTTACTATACATTCATAATTAATTCAATTACATGTCAGAACAACTTGAA
66 CAAGAACCCATTTAATTTTACTATACATTCATAATTAATTCAATTACATGTAAGAACAACTTGAA
3835337 AACATAGGCCTAATTGCCACTAATCTCATACACTAAAGAAAGACCGTAATGATTTCTTAT
131 AACATAGGCCTAATTGCCACTAATCTCATACACTAAAGAAAGACCGTAATGATTTCTTAT
* * * *
3835397 GTTACTAAGCGGAATTGTAACACCCCATACCCAACTCGATCCCTGAGTC-AGAGTACTGGATGCT
1 GTTACTAAGCGGAATTGTAACACCCCATACCCAACCCAATCCCTGAGTCTA-AGTACCGAATGCT
* * *
3835461 ACAAGAACCTATTTAATTTTATTATGCATTCATAATTAATTCAATTACATGTAAGAACAACTTGA
65 ACAAGAACCCATTTAATTTTACTATACATTCATAATTAATTCAATTACATGTAAGAACAACTTGA
* * * *
3835526 AAACTTATGCCTAATTGCCACTAATCTCATACACTAAAGAAATATCGTAATGATTTCTTAT
130 AAACATAGGCCTAATTGCCACTAATCTCATACACTAAAGAAAGACCGTAATGATTTCTTAT
3835587 G
1 G
3835588 ACCTTAGTTT
Statistics
Matches: 170, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
189 1 0.01
190 169 0.99
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (190 bp):
GTTACTAAGCGGAATTGTAACACCCCATACCCAACCCAATCCCTGAGTCTAAGTACCGAATGCTA
CAAGAACCCATTTAATTTTACTATACATTCATAATTAATTCAATTACATGTAAGAACAACTTGAA
AACATAGGCCTAATTGCCACTAATCTCATACACTAAAGAAAGACCGTAATGATTTCTTAT
Found at i:3840934 original size:3 final size:3
Alignment explanation
Indices: 3840887--3840983 Score: 67
Period size: 3 Copynumber: 32.3 Consensus size: 3
3840877 TTTAGCATTT
* * * * *
3840887 TTA TTA TT- TTC TTCA TTA TTT TTA ATA -TA TTA TCA TCTT TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* *
3840932 TTA TTA TTA TTA TTA TTA TT- TATA TCA TTA TTA CTTA TCA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TTA
3840977 TTA TTA T
1 TTA TTA T
3840984 ATAATAGCTT
Statistics
Matches: 74, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
2 6 0.08
3 61 0.82
4 7 0.09
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:3840947 original size:42 final size:44
Alignment explanation
Indices: 3840887--3840983 Score: 107
Period size: 42 Copynumber: 2.3 Consensus size: 44
3840877 TTTAGCATTT
* *
3840887 TTATTATT-TTCTTCATTATT-TTTAATAT-ATTATCATCTT-TTA
1 TTATTATTATTATTCATTATTATTT-ATATCATTATCA-CTTATCA
*
3840929 TTATTATTATTATT-ATTATTATTTATATCATTATTACTTATCA
1 TTATTATTATTATTCATTATTATTTATATCATTATCACTTATCA
3840972 -TATTATTATTAT
1 TTATTATTATTAT
3840984 ATAATAGCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
42 33 0.69
43 15 0.31
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (44 bp):
TTATTATTATTATTCATTATTATTTATATCATTATCACTTATCA
Found at i:3841174 original size:21 final size:19
Alignment explanation
Indices: 3841157--3841204 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
3841147 ATATTATATA
* *
3841157 TTTTTTATTTTATTTTATGT
1 TTTTTTATCTTACTTTAT-T
3841177 TATTTTTATCTTACTTTATT
1 T-TTTTTATCTTACTTTATT
3841197 TTTTTTAT
1 TTTTTTAT
3841205 AATTCACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 3 0.12
21 15 0.60
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTATCTTACTTTATT
Found at i:3841442 original size:12 final size:12
Alignment explanation
Indices: 3841425--3841464 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
3841415 ATTTATCCTT
3841425 TATATTTTAAAA
1 TATATTTTAAAA
* *
3841437 TATATTTTTATA
1 TATATTTTAAAA
3841449 TATATTTTATAAA
1 TATATTTTA-AAA
3841462 TAT
1 TAT
3841465 TTTGTAATTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 18 0.78
13 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATATTTTAAAA
Found at i:3841449 original size:10 final size:11
Alignment explanation
Indices: 3841425--3841467 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
3841415 ATTTATCCTT
*
3841425 TATATTTTAAAA
1 TATATTTT-ATA
3841437 TATATTTTTATA
1 TATA-TTTTATA
3841449 TATATTTTATA
1 TATATTTTATA
*
3841460 AATATTTT
1 TATATTTT
3841468 GTAATTCACG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 14 0.50
12 10 0.36
13 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATTTTATA
Found at i:3842061 original size:108 final size:108
Alignment explanation
Indices: 3841794--3842223 Score: 587
Period size: 108 Copynumber: 3.9 Consensus size: 108
3841784 AAGGAAAATA
* * * * * *
3841794 TTTCAAATTGAGGCAATATTTTGCGTTTGGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTCAAAATAAGGCAATATTTTGCGTTT-GAAAATTCGAG-GAACGTGCCCTAAGGTACTGGGTT
3841859 TCGATTTTTCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACT
64 TCGA--TTTCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACT
* *
3841906 TTTCAAAAATAAGGTAATGTTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTT
1 TTTC-AAAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTT
* *
3841971 CGATTTCTCGTTCCACCAAAT-GACTTAATATCCTTTTCAAAAA-T
65 CGATTTCTCGTTCGACCAAATAG-CTAAATATCCTTTT-AAAAACT
*
3842015 TTTCAAAATAAGACAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTC
1 TTTCAAAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTC
*
3842080 GATTCCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACT
66 GATTTCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACT
* * * * *
3842123 TTTCAAAGTAAGGCAATGTTTTGCGTTTGGAAATTTGAGGAACGTGCCCTAAGGTGCTGGGTTTC
1 TTTCAAAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTC
* * *
3842188 GATTTCTCGTT-TATCCAAATTGCCAAATATCCTTTT
66 GATTTCTCGTTCGA-CCAAATAGCTAAATATCCTTTT
3842224 GAATTTTAAT
Statistics
Matches: 286, Mismatches: 26, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
107 6 0.02
108 180 0.63
109 36 0.13
110 5 0.02
111 24 0.08
112 15 0.05
113 20 0.07
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (108 bp):
TTTCAAAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTC
GATTTCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACT
Found at i:3842189 original size:216 final size:221
Alignment explanation
Indices: 3841788--3842198 Score: 661
Period size: 216 Copynumber: 1.9 Consensus size: 221
3841778 TCAAAAAAGG
* * * *
3841788 AAAATATTTCAAATTGAGGCAATATTTTGCGTTTGGAAAATTCGAGAAAACATGCCCTAAGGTGC
1 AAAATATTTCAAAATAAGACAATATTTTGCGTTTGGAAAATTCGAGAAAACATGCCCTAAGGTAC
*
3841853 TGGGTGTCGATTTTTCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAATAA
66 TGGGTGTCGA-TTTCCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAATAA
*
3841918 GGTAATGTTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGTT
130 GGCAATGTTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGTT
3841983 CCACCAAATGACTTAATATCCTTTTCA
195 CCACCAAATGACTTAATATCCTTTTCA
* *
3842010 AAAAT-TTTCAAAATAAGACAATATTTTGCGTTT-GAAAATTCGAG-GAACGTGCCCTAAGGTAC
1 AAAATATTTCAAAATAAGACAATATTTTGCGTTTGGAAAATTCGAGAAAACATGCCCTAAGGTAC
* *
3842072 TGGGTTTCGA-TTCCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTC-AAAGTAAG
66 TGGGTGTCGATTTCCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAATAAG
* * *
3842135 GCAATGTTTTGCGTTTGGAAATTTGAGGAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGTT
131 GCAATGTTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGTT
3842199 TATCCAAATT
Statistics
Matches: 176, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
216 67 0.38
217 44 0.25
219 24 0.14
220 11 0.06
221 25 0.14
222 5 0.03
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (221 bp):
AAAATATTTCAAAATAAGACAATATTTTGCGTTTGGAAAATTCGAGAAAACATGCCCTAAGGTAC
TGGGTGTCGATTTCCTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAATAAG
GCAATGTTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGTTC
CACCAAATGACTTAATATCCTTTTCA
Found at i:3843666 original size:3 final size:3
Alignment explanation
Indices: 3843658--3843694 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
3843648 ATATGTAGGT
3843658 ATA ATA ATA ATA ATA ATA TATA AT- ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA A
3843695 CAAAATTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:3843704 original size:18 final size:21
Alignment explanation
Indices: 3843661--3843710 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
3843651 TGTAGGTATA
*
3843661 ATAATAATAATAATATATAAT
1 ATAATAATAATAACATATAAT
3843682 ATAATAATAATAACA-A-AAT
1 ATAATAATAATAACATATAAT
3843701 -TAATAA-AATA
1 ATAATAATAATA
3843711 GACTAAAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 3 0.11
20 1 0.04
21 14 0.50
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAATAATAATAACATATAAT
Found at i:3844043 original size:53 final size:54
Alignment explanation
Indices: 3843966--3844071 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 54
3843956 CACCTTTAAA
3843966 AAACTGCCAATCGTTCTCCCTTTTTTTATTCTTTT-TTTCTTTTCTTTTTTTTT
1 AAACTGCCAATCGTTCTCCCTTTTTTTATTCTTTTCTTTCTTTTCTTTTTTTTT
* *
3844019 AAACTGTCAATCGTTCTCCCTTTTTTTATTCTTTTCTTTTTTTTCTTTTTTTT
1 AAACTGCCAATCGTTCTCCCTTTTTTTATTCTTTTCTTTCTTTTCTTTTTTTT
3844072 CGACATTGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 34 0.68
54 16 0.32
ACGTcount: A:0.11, C:0.20, G:0.04, T:0.65
Consensus pattern (54 bp):
AAACTGCCAATCGTTCTCCCTTTTTTTATTCTTTTCTTTCTTTTCTTTTTTTTT
Found at i:3844064 original size:14 final size:14
Alignment explanation
Indices: 3844039--3844071 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
3844029 TCGTTCTCCC
3844039 TTTTTTTATTCTTT
1 TTTTTTTATTCTTT
3844053 TCTTTTTT-TTCTTT
1 T-TTTTTTATTCTTT
3844067 TTTTT
1 TTTTT
3844072 CGACATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 8 0.44
15 6 0.33
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTTATTCTTT
Found at i:3844228 original size:21 final size:21
Alignment explanation
Indices: 3844202--3844277 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
3844192 AATCATATCT
3844202 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
*
3844223 TCTAAGATTGCATATATCATA
1 TCTAAGATTGTATATATCATA
*
3844244 TCTAAGATTG--CATATCATA
1 TCTAAGATTGTATATATCATA
* *
3844263 TTTAAGATCGTATAT
1 TCTAAGATTGTATAT
3844278 CCTCGAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 16 0.33
21 32 0.67
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:3844237 original size:19 final size:20
Alignment explanation
Indices: 3844179--3844270 Score: 96
Period size: 21 Copynumber: 4.4 Consensus size: 20
3844169 AAATTAAATC
* *
3844179 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
*
3844199 TCTTCTAAGATTGTATATATCATA
1 ---TCTAAGATTGCA-ATATCATA
3844223 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
3844244 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCAATATCATA
*
3844263 TTTAAGAT
1 TCTAAGAT
3844271 CGTATATCCT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
19 15 0.24
21 31 0.49
23 10 0.16
24 7 0.11
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:3844277 original size:19 final size:19
Alignment explanation
Indices: 3844214--3844278 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
3844204 TAAGATTGTA
*
3844214 TATATCATATCTAAGATTGCA
1 TATATCATATCTAAGA-T-CG
*
3844235 TATATCATATCTAAGATTG
1 TATATCATATCTAAGATCG
* *
3844254 CATATCATATTTAAGATCG
1 TATATCATATCTAAGATCG
3844273 TATATC
1 TATATC
3844279 CTCGAAAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 21 0.55
20 1 0.03
21 16 0.42
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (19 bp):
TATATCATATCTAAGATCG
Found at i:3845146 original size:50 final size:49
Alignment explanation
Indices: 3845028--3845572 Score: 367
Period size: 50 Copynumber: 11.1 Consensus size: 49
3845018 AAAAAAAATT
* * * * **
3845028 ACACCAGCAGTACCAAAAAAAAACTTTTAGGTGTTGGCCTGTCAATAACCTG
1 ACACCAGCAATACGAAAAAAAAA-TTTTGGGTGCTGGCCTGTCAAT-GGC-G
* * *
3845080 -CACCAGTAGTAC-AAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGTCG
1 ACACCAGCAATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGG-CG
* *
3845128 ACACCAGCAATACG--AAAAAAATTTTGGGTGCTGGCTTGTTAATGGCCGG
1 ACACCAGCAATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGG-C-G
* **
3845177 TACCACCAGC-AT--GAAATAAATTTTTTGGGT-CTTGGCCTGTCAATGGCCG
1 -A-CACCAGCAATACGAAAAAAAAATTTTGGGTGC-TGGCCTGTCAATGG-CG
* * * * * * *
3845226 GCACCACCAGTATGAAAAAAACAA-TTTGGGTACTGGCCTGTAAATGGTTG
1 ACACCAGCAATACGAAAAAAA-AATTTTGGGTGCTGGCCTGTCAATGG-CG
* * * *
3845276 GCACCACCAATACGAAAAAAAAA-TTTGGGTGCTGGCTTGTTAATGGCTG
1 ACACCAGCAATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGC-G
* *
3845325 GCACCA-CTAATACGAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCTG
1 ACACCAGC-AATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGC-G
* * * * * * *
3845375 GCACCACCAGTAC--AAAAAAAACTTTGGGTGCCGGCCTATCAATGGCA
1 ACACCAGCAATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCG
* **
3845422 ATCACCA--ATATACG-AAAAAAAA-TTTGGGTGTTGGCCTGTCAATAGTTG
1 A-CACCAGCA-ATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAAT-GGCG
* * * *
3845470 GCACCAG-GATATG-AAAAAAAATTTTGGGTGC-GGACCTGTCAATGGCC
1 ACACCAGCAATACGAAAAAAAAATTTTGGGTGCTGG-CCTGTCAATGGCG
* *
3845517 AGCACCAGCAGTACGAAAAAAAAAATTT-GGTGCTGGCCTGTCAATGGCTG
1 A-CACCAGCAATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGC-G
3845567 ACACCA
1 ACACCA
3845573 AATTTATCAA
Statistics
Matches: 403, Mismatches: 60, Indels: 63
0.77 0.11 0.12
Matches are distributed among these distances:
46 1 0.00
47 47 0.12
48 100 0.25
49 102 0.25
50 133 0.33
51 20 0.05
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (49 bp):
ACACCAGCAATACGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCG
Found at i:3845342 original size:99 final size:99
Alignment explanation
Indices: 3845092--3845572 Score: 439
Period size: 99 Copynumber: 4.9 Consensus size: 99
3845082 CCAGTAGTAC
* * *
3845092 AAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGTC-GACACCAGC-AATACG--AAAAAAATTTT
1 AAAAAAAAA-TTTGGGTGCTGGCCTGTCAATGGCCAG-CACCA-CTAATACGAAAAAAAAAATTT
* * * * ** *
3845153 GGGTGCTGGCTTGTTAATGGCCGGTACCACCAGCATG
63 GGGTGCTGGCCTGTCAATGGCTGGCACCACCAATACG
*** * * * * *
3845190 AAATAAATTTTTTGGGT-CTTGGCCTGTCAATGGCCGGCACCACCAGTATGAAAAAAACAATTTG
1 AAA-AAAAAATTTGGGTGC-TGGCCTGTCAATGGCCAGCACCACTAATACGAAAAAAAAAATTTG
* * *
3845254 GGTACTGGCCTGTAAATGGTTGGCACCACCAATACG
64 GGTGCTGGCCTGTCAATGGCTGGCACCACCAATACG
* * **
3845290 AAAAAAAAATTTGGGTGCTGGCTTGTTAATGGCTGGCACCACTAATACGAAAAAAAAAATTTGGG
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCAGCACCACTAATACGAAAAAAAAAATTTGGG
*
3845355 TGCTGGCCTGTCAATGGCTGGCACCACCAGTAC-
66 TGCTGGCCTGTCAATGGCTGGCACCACCAATACG
* * * * * *
3845388 AAAAAAAACTTTGGGTGCCGGCCTATCAATGGCAATCACCAAT-ATACG--AAAAAAAATTTGGG
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCAGCACCACTAATACGAAAAAAAAAATTTGGG
* * * ** *
3845450 TGTTGGCCTGTCAATAGTTGGCACCA-GGATATG
66 TGCTGGCCTGTCAATGGCTGGCACCACCAATACG
* *
3845483 AAAAAAAATTTTGGGTGC-GGACCTGTCAATGGCCAGCACCAGC-AGTACGAAAAAAAAAATTT-
1 AAAAAAAAATTTGGGTGCTGG-CCTGTCAATGGCCAGCACCA-CTAATACGAAAAAAAAAATTTG
*
3845545 GGTGCTGGCCTGTCAATGGCTGACACCA
64 GGTGCTGGCCTGTCAATGGCTGGCACCA
3845573 AATTTATCAA
Statistics
Matches: 312, Mismatches: 58, Indels: 27
0.79 0.15 0.07
Matches are distributed among these distances:
94 4 0.01
95 71 0.23
96 4 0.01
97 31 0.10
98 78 0.25
99 83 0.27
100 41 0.13
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (99 bp):
AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCAGCACCACTAATACGAAAAAAAAAATTTGGG
TGCTGGCCTGTCAATGGCTGGCACCACCAATACG
Found at i:3845472 original size:95 final size:95
Alignment explanation
Indices: 3845089--3845572 Score: 363
Period size: 98 Copynumber: 5.0 Consensus size: 95
3845079 GCACCAGTAG
** * *
3845089 TACAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGTCGA-CACCAGCA-ATACG-AAAAAAATT
1 TACAAAAAAAAA-TTTGGGTGCCGGCCTGTCAATGG-CAAGCACCA--ATATACGAAAAAAAAAT
* * ** *
3845151 TTGGGTGCTGGCTTGTTAATGGCCGGTACCACCA
62 TTGGGTGCTGGCCTGTCAATGGTTGGCACCACCA
* ** * ** ** *
3845185 -GCATGAAATAAATTTTTTGGGT-CTTGGCCTGTCAATGGCCGGCACCACCAGTATGAAAAAAAC
1 TACA--AAA-AAA-AATTTGGGTGC-CGGCCTGTCAATGGCAAGCACCAATA-TACGAAAAAAA-
* *
3845248 AATTTGGGTACTGGCCTGTAAATGGTTGGCACCACCAA
59 AATTTGGGTGCTGGCCTGTCAATGGTTGGCACCACC-A
* * * ** *
3845286 TACGAAAAAAAAATTTGGGTGCTGGCTTGTTAATGGCTGGCACCACTAATACGAAAAAAAAAATT
1 TAC-AAAAAAAAATTTGGGTGCCGGCCTGTCAATGGCAAGCACCAAT-ATACG-AAAAAAAAATT
*
3845351 TGGGTGCTGGCCTGTCAATGGCTGGCACCACCA
63 TGGGTGCTGGCCTGTCAATGGTTGGCACCACCA
* * *
3845384 GTACAAAAAAAACTTTGGGTGCCGGCCTATCAATGGCAATCACCAATATACG-AAAAAAAATTTG
1 -TACAAAAAAAAATTTGGGTGCCGGCCTGTCAATGGCAAGCACCAATATACGAAAAAAAAATTTG
* * **
3845448 GGTGTTGGCCTGTCAATAGTTGGCACCAGGA
65 GGTGCTGGCCTGTCAATGGTTGGCACCACCA
* * * **
3845479 TATGAAAAAAAATTTTGGGTG-CGGACCTGTCAATGGCCAGCACCAGCAGTACGAAAAAAAAAAT
1 TA-CAAAAAAAAATTTGGGTGCCGG-CCTGTCAATGGCAAGCACCAATA-TACG-AAAAAAAAAT
* *
3845543 TT-GGTGCTGGCCTGTCAATGGCTGACACCA
62 TTGGGTGCTGGCCTGTCAATGGTTGGCACCA
3845573 AATTTATCAA
Statistics
Matches: 315, Mismatches: 51, Indels: 43
0.77 0.12 0.11
Matches are distributed among these distances:
94 5 0.02
95 74 0.23
96 4 0.01
97 35 0.11
98 77 0.24
99 73 0.23
100 41 0.13
101 4 0.01
102 1 0.00
103 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (95 bp):
TACAAAAAAAAATTTGGGTGCCGGCCTGTCAATGGCAAGCACCAATATACGAAAAAAAAATTTGG
GTGCTGGCCTGTCAATGGTTGGCACCACCA
Found at i:3851306 original size:99 final size:99
Alignment explanation
Indices: 3850863--3851558 Score: 509
Period size: 103 Copynumber: 6.8 Consensus size: 99
3850853 TTTCTATACA
* * * * *
3850863 CTGGTGCCA-GCCATTGACAGGCCAACA-CCAAAAAAAATTTTTTCGTACAAGTGGTGCCGGCCA
1 CTGGTG-CAGGCCATTAACAGGCCAACACCCAAAAAAAA-ATTTTCGTA-TACTGGTGCCGACCA
* * * *
3850926 TTGACAAGCCAGCACTCAAAAAAAAACTTTCATACCG
63 TTGACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
* * * * * * ** *
3850963 GTGGTGCCA-GTCTTTGACAAGCCAACACCTAAAAAAAAA-TTTCGTACTGGTGGTGTC-AGCCA
1 CTGGTG-CAGGCCATTAACAGGCCAACACCCAAAAAAAAATTTTCGTA-TACTGGTGCCGA-CCA
* *
3851025 TTGACAAGCCAGCACCTAAAAAATAATTTTTTTTCGTACTG
63 TTGACAAGCCAGCACCCAAAAAA-AA---ATTTTCGTACTG
* * * * *
3851066 GTGGTGCTA-GCCATTAACAGGCCAGCTCCCAAAAAAAAAAATTTT-G--TACTGGAGTTACCGG
1 CTGGTGC-AGGCCATTAACAGGCCAACACCC--AAAAAAAAATTTTCGTATACT-G-G-TGCCGA
* **
3851127 CCATTGACAGGCCAGCACCCTAAAAAATTATTTTTTTTCGTACTG
60 CCATTGACAAGCCAGCACCC-AAAAAA--A--AATTTTCGTACTG
* * *
3851172 CTCGTGTC-GGCCATTCACAGGCCAGA-ACCCAAAAAAAAATTTTCGTATACTGGTGCTGACCAT
1 CTGGTG-CAGGCCATTAACAGGCCA-ACACCCAAAAAAAAATTTTCGTATACTGGTGCCGACCAT
* *
3851235 TGACAAGCAAGCACCCAAAAAAAAATTTCCGTACTG
64 TGACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
* * *
3851271 CTGGTGCAGGCCATTAACAGGCCAGCACCCAAAAAAAAACTTTTTTTCGTATACTGGTACCGGCC
1 CTGGTGCAGGCCATTAACAGGCCAACACCCAAAAAAAAA----TTTTCGTATACTGGTGCCGACC
* * *
3851336 ATTGACAGGCCAGAACCCAAAAAAAAATTTTCGTATTG
62 ATTGACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
* * * * * * **
3851374 GTGATGCCGACCATTAATAGGCCATCACCCAAAAAAAAATTTTCGTACTGGTGGTGCCGACCATT
1 CTGGTGCAGGCCATTAACAGGCCAACACCCAAAAAAAAATTTTCGTA-TACTGGTGCCGACCATT
*
3851439 GACAAGCCAGCACCCAAAAAAAAA-TTTCGTACTA
65 GACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
* * * * * *
3851473 CTGGTGCTGGCCATTGACAGGTCAACACCCAAAAAAAAAAAATTT-GTATTGCTGGTGCCGGCCA
1 CTGGTGCAGGCCATTAACAGGCCAACACCC--AAAAAAAAATTTTCGTA-TACTGGTGCCGACCA
* * *
3851537 TTGACAGGCTAGCACCTAAAAA
63 TTGACAAGCCAGCACCCAAAAA
3851559 TTTTTTTTGT
Statistics
Matches: 479, Mismatches: 84, Indels: 66
0.76 0.13 0.10
Matches are distributed among these distances:
98 1 0.00
99 120 0.25
100 95 0.20
101 22 0.05
102 3 0.01
103 121 0.25
104 35 0.07
105 32 0.07
106 43 0.09
107 7 0.01
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (99 bp):
CTGGTGCAGGCCATTAACAGGCCAACACCCAAAAAAAAATTTTCGTATACTGGTGCCGACCATTG
ACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
Found at i:3851354 original size:103 final size:99
Alignment explanation
Indices: 3850863--3851511 Score: 483
Period size: 99 Copynumber: 6.4 Consensus size: 99
3850853 TTTCTATACA
* * * * * * *
3850863 CTGGTGCCA-GCCATTGACAGGCCAACA-CCAAAAAAAATTTTTTCGTACAAGTGGTGCCGGCCA
1 CTGGTG-CAGGCCATTAACAGGCCAGCACCCAAAAAAAA-ATTTTCGTA-TACTGGTACCGACCA
* * * *
3850926 TTGACAAGCCAGCACTCAAAAAAAAACTTTCATACCG
63 TTGACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
* * * * * * * ** **
3850963 GTGGTGCCA-GTCTTTGACAAGCCAACACCTAAAAAAAAA-TTTCGTACTGGTGGTGTC-AGCCA
1 CTGGTG-CAGGCCATTAACAGGCCAGCACCCAAAAAAAAATTTTCGTA-TACTGGTACCGA-CCA
* *
3851025 TTGACAAGCCAGCACCTAAAAAATAATTTTTTTTCGTACTG
63 TTGACAAGCCAGCACCCAAAAAA-AA---ATTTTCGTACTG
* * *
3851066 GTGGTGCTA-GCCATTAACAGGCCAGCTCCCAAAAAAAAAAATTTT-G--TACTGGAGTTACCGG
1 CTGGTGC-AGGCCATTAACAGGCCAGCACCC--AAAAAAAAATTTTCGTATACT-G-G-TACCGA
* **
3851127 CCATTGACAGGCCAGCACCCTAAAAAATTATTTTTTTTCGTACTG
60 CCATTGACAAGCCAGCACCC-AAAAAA--A--AATTTTCGTACTG
* * * * *
3851172 CTCGTGTC-GGCCATTCACAGGCCAGAACCCAAAAAAAAATTTTCGTATACTGGTGCTGACCATT
1 CTGGTG-CAGGCCATTAACAGGCCAGCACCCAAAAAAAAATTTTCGTATACTGGTACCGACCATT
* *
3851236 GACAAGCAAGCACCCAAAAAAAAATTTCCGTACTG
65 GACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
*
3851271 CTGGTGCAGGCCATTAACAGGCCAGCACCCAAAAAAAAACTTTTTTTCGTATACTGGTACCGGCC
1 CTGGTGCAGGCCATTAACAGGCCAGCACCCAAAAAAAAA----TTTTCGTATACTGGTACCGACC
* * *
3851336 ATTGACAGGCCAGAACCCAAAAAAAAATTTTCGTATTG
62 ATTGACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
* * * * * * ** *
3851374 GTGATGCCGACCATTAATAGGCCATCACCCAAAAAAAAATTTTCGTACTGGTGGTGCCGACCATT
1 CTGGTGCAGGCCATTAACAGGCCAGCACCCAAAAAAAAATTTTCGTA-TACTGGTACCGACCATT
*
3851439 GACAAGCCAGCACCCAAAAAAAAA-TTTCGTACTA
65 GACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
* * * *
3851473 CTGGTGCTGGCCATTGACAGGTCAACACCCAAAAAAAAA
1 CTGGTGCAGGCCATTAACAGGCCAGCACCCAAAAAAAAA
3851512 AAATTTGTAT
Statistics
Matches: 443, Mismatches: 77, Indels: 59
0.77 0.13 0.10
Matches are distributed among these distances:
98 1 0.00
99 130 0.29
100 60 0.14
101 10 0.02
102 3 0.01
103 121 0.27
104 35 0.08
105 32 0.07
106 44 0.10
107 7 0.02
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (99 bp):
CTGGTGCAGGCCATTAACAGGCCAGCACCCAAAAAAAAATTTTCGTATACTGGTACCGACCATTG
ACAAGCCAGCACCCAAAAAAAAATTTTCGTACTG
Found at i:3851558 original size:49 final size:50
Alignment explanation
Indices: 3850863--3851558 Score: 519
Period size: 50 Copynumber: 13.7 Consensus size: 50
3850853 TTTCTATACA
* * * *
3850863 CTGGTGCCAGCCATTGACAGGCCAACACC-AAAAAAAATTTTTTCGTACAAG
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAA-ATTTTCGTAC-TG
* * * *
3850914 -TGGTGCCGGCCATTGACAAGCCAGCA-CTCAAAAAAAAACTTTCATACCG
1 CTGGTGCCGGCCATTGACAGGCCAGCACCT-AAAAAAAAATTTTCGTACTG
* * * * * *
3850963 GTGGTGCCAGTCTTTGACAAGCCAACACCTAAAAAAAAA-TTTCGTACTG
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAATTTTCGTACTG
* * * * *
3851012 GTGGTGTCAGCCATTGACAAGCCAGCACCTAAAAAATAATTTTTTTTCGTACTG
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAA-AA---ATTTTCGTACTG
* ** * * *
3851066 GTGGTGCTAGCCATTAACAGGCCAGCTCCCAAAAAAAAAAATTTT-GTACTG
1 CTGGTGCCGGCCATTGACAGGCCAGC-ACC-TAAAAAAAAATTTTCGTACTG
** * * **
3851117 GAGTTACCGGCCATTGACAGGCCAGCACCCTAAAAAATTATTTTTTTTCGTACTG
1 CTGGTGCCGGCCATTGACAGGCCAGCA-CCTAAAAAA--A--AATTTTCGTACTG
* * * * * *
3851172 CTCGTGTCGGCCATTCACAGGCCAGAACCCAAAAAAAAATTTTCGTA-TA
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAATTTTCGTACTG
* * * * * *
3851221 CTGGTGCTGACCATTGACAAGCAAGCACCCAAAAAAAAATTTCCGTACTG
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAATTTTCGTACTG
* * * *
3851271 CTGGTGCAGGCCATTAACAGGCCAGCACCCAAAAAAAAACTTTTTTTCGTA-TA
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAA----TTTTCGTACTG
* * * *
3851324 CTGGTACCGGCCATTGACAGGCCAGAACCCAAAAAAAAATTTTCGTATTG
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAATTTTCGTACTG
* * * * * * *
3851374 GTGATGCCGACCATTAATAGGCCATCACCCAAAAAAAAATTTTCGTACTG
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAATTTTCGTACTG
* * * * *
3851424 GTGGTGCCGACCATTGACAAGCCAGCACCCAAAAAAAAA-TTTCGTACTA
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAATTTTCGTACTG
* * * * * *
3851473 CTGGTGCTGGCCATTGACAGGTCAACACCCAAAAAAAAAAAATTT-GTATTG
1 CTGGTGCCGGCCATTGACAGGCCAGCA-CC-TAAAAAAAAATTTTCGTACTG
*
3851524 CTGGTGCCGGCCATTGACAGGCTAGCACCTAAAAA
1 CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAA
3851559 TTTTTTTTGT
Statistics
Matches: 521, Mismatches: 98, Indels: 54
0.77 0.15 0.08
Matches are distributed among these distances:
49 124 0.24
50 192 0.37
51 74 0.14
52 9 0.02
53 36 0.07
54 51 0.10
55 29 0.06
56 6 0.01
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (50 bp):
CTGGTGCCGGCCATTGACAGGCCAGCACCTAAAAAAAAATTTTCGTACTG
Found at i:3853893 original size:100 final size:101
Alignment explanation
Indices: 3853788--3853972 Score: 268
Period size: 100 Copynumber: 1.8 Consensus size: 101
3853778 GCCCCCCTTT
**
3853788 TTTTTGCAATCAATT-AGGTATTTGAACTTTCAAAATGCATCAAAAAGG-CCCTCAAACTTTCTC
1 TTTTTGCAATCAATTGA-GTATTTGAACTGCCAAAATGCAT-AAAAAGGACCCTCAAACTTTCTC
*
3853851 AAAAAA-GCAACTAAGCCCCTGTTTCTTCTTCTTCTTC
64 AAAAAATGCAACTAAACCCCTGTTTCTTCTTCTTCTTC
* * *
3853888 TTTTTGCACTCAATTGAGTATTTGAACTGCCAAAATGCATTAAAAGGACCCTCAAACTTTTTCAA
1 TTTTTGCAATCAATTGAGTATTTGAACTGCCAAAATGCATAAAAAGGACCCTCAAACTTTCTCAA
*
3853953 AAAATGCAATTAAACCCCTG
66 AAAATGCAACTAAACCCCTG
3853973 CTCCTTTTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
99 6 0.08
100 55 0.73
101 14 0.19
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.33
Consensus pattern (101 bp):
TTTTTGCAATCAATTGAGTATTTGAACTGCCAAAATGCATAAAAAGGACCCTCAAACTTTCTCAA
AAAATGCAACTAAACCCCTGTTTCTTCTTCTTCTTC
Found at i:3854357 original size:20 final size:20
Alignment explanation
Indices: 3854332--3854382 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
3854322 AAAAAACCCT
*
3854332 TTGACCGTTAACTTTAACAG
1 TTGACCATTAACTTTAACAG
*
3854352 TTGACCATTAACTTTAACGG
1 TTGACCATTAACTTTAACAG
*
3854372 TTGACTATTAA
1 TTGACCATTAA
3854383 AGTTAGTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
TTGACCATTAACTTTAACAG
Found at i:3854487 original size:20 final size:20
Alignment explanation
Indices: 3854462--3854517 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
3854452 ACATGTGGCA
3854462 AAAAATGATAAAAAATAAAT
1 AAAAATGATAAAAAATAAAT
* * ** *
3854482 AAAAATTATTAAATTTTAAT
1 AAAAATGATAAAAAATAAAT
3854502 AAAAATG-TAAAAAATA
1 AAAAATGATAAAAAATA
3854518 TAAATTTTAT
Statistics
Matches: 26, Mismatches: 10, Indels: 1
0.70 0.27 0.03
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (20 bp):
AAAAATGATAAAAAATAAAT
Found at i:3854521 original size:27 final size:27
Alignment explanation
Indices: 3854472--3854550 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 27
3854462 AAAAATGATA
* *
3854472 AAAAATAAATAAAAATTATTAAATTTTAAT
1 AAAAAT-AGTAAAAAATA-TAAATTTT-AT
3854502 AAAAAT-GTAAAAAATATAAATTTTAT
1 AAAAATAGTAAAAAATATAAATTTTAT
*
3854528 TAAAATAGTACAAAAATTATAAA
1 AAAAATAGTA-AAAAA-TATAAA
3854551 AAAATTGTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
26 7 0.16
27 11 0.26
28 13 0.30
29 6 0.14
30 6 0.14
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (27 bp):
AAAAATAGTAAAAAATATAAATTTTAT
Found at i:3854552 original size:10 final size:10
Alignment explanation
Indices: 3854539--3854689 Score: 52
Period size: 10 Copynumber: 15.3 Consensus size: 10
3854529 AAAATAGTAC
3854539 AAAAATTATAA
1 AAAAATTAT-A
*
3854550 AAAAATTGTA
1 AAAAATTATA
**
3854560 AAATTTTATA
1 AAAAATTATA
3854570 AAAAATCGTA-A
1 AAAAAT--TATA
*
3854581 AAAAAATAT-
1 AAAAATTATA
*
3854590 AAAATTTAT-
1 AAAAATTATA
*
3854599 AGAAATGTATAA
1 AAAAAT-TAT-A
3854611 AAAAATTAT-
1 AAAAATTATA
*
3854620 -AAAATTTTA
1 AAAAATTATA
* * *
3854629 TAAAGTCATA
1 AAAAATTATA
3854639 AGAAAATTA-A
1 A-AAAATTATA
3854649 AAAAATGTA-A
1 AAAAAT-TATA
*
3854659 AGAAA-TAT-
1 AAAAATTATA
*
3854667 -AAAATTCGTA
1 AAAAATT-ATA
3854677 AAAAATTATA
1 AAAAATTATA
3854687 AAA
1 AAA
3854690 CTTATCATAC
Statistics
Matches: 102, Mismatches: 23, Indels: 31
0.65 0.15 0.20
Matches are distributed among these distances:
7 3 0.03
8 10 0.10
9 19 0.19
10 35 0.34
11 28 0.27
12 7 0.07
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:3854568 original size:21 final size:20
Alignment explanation
Indices: 3854510--3854632 Score: 70
Period size: 20 Copynumber: 6.1 Consensus size: 20
3854500 ATAAAAATGT
* *
3854510 AAAAAA-TATAAATTTTATT
1 AAAAAATTATAAAATTTATA
* * * *
3854529 AAAATAGTACAAAAATTATA
1 AAAAAATTATAAAATTTATA
*
3854549 AAAAAATTGTAAAATTT-TA
1 AAAAAATTATAAAATTTATA
** ***
3854568 TAAAAAATCGTAAAAAAAATA
1 -AAAAAATTATAAAATTTATA
* * *
3854589 TAAAATTTATAGAAATGTATA
1 AAAAAATTATA-AAATTTATA
3854610 AAAAAATTATAAAATTTTATA
1 AAAAAATTATAAAA-TTTATA
3854631 AA
1 AA
3854633 GTCATAAGAA
Statistics
Matches: 75, Mismatches: 24, Indels: 8
0.70 0.22 0.07
Matches are distributed among these distances:
19 7 0.09
20 44 0.59
21 24 0.32
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (20 bp):
AAAAAATTATAAAATTTATA
Found at i:3854573 original size:30 final size:30
Alignment explanation
Indices: 3854539--3854632 Score: 118
Period size: 31 Copynumber: 3.1 Consensus size: 30
3854529 AAAATAGTAC
*
3854539 AAAAATTATAAAAAAATTGTAAAATTTTAT
1 AAAAATTATAAAAAAATTATAAAATTTTAT
** *
3854569 AAAAAATCGTAAAAAAAATATAAAA-TTTAT
1 -AAAAATTATAAAAAAATTATAAAATTTTAT
*
3854599 AGAAATGTATAAAAAAATTATAAAATTTTAT
1 AAAAAT-TATAAAAAAATTATAAAATTTTAT
3854630 AAA
1 AAA
3854633 GTCATAAGAA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
29 5 0.10
30 20 0.38
31 27 0.52
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (30 bp):
AAAAATTATAAAAAAATTATAAAATTTTAT
Found at i:3854647 original size:29 final size:29
Alignment explanation
Indices: 3854546--3854652 Score: 108
Period size: 30 Copynumber: 3.6 Consensus size: 29
3854536 TACAAAAATT
* *
3854546 ATAAAAAAATTGTAAAATTTTATAAAAAATC
1 ATAAAAAAATTATAAAATTTTAT--AAAGTC
* * *
3854577 GTAAAAAAAATATAAAATTTATAGAAATGT-
1 ATAAAAAAATTATAAAATTT-TATAAA-GTC
3854607 ATAAAAAAATTATAAAATTTTATAAAGTC
1 ATAAAAAAATTATAAAATTTTATAAAGTC
* *
3854636 ATAAGAAAATTAAAAAA
1 ATAAAAAAATTATAAAA
3854653 ATGTAAAGAA
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 2 0.03
29 20 0.32
30 21 0.33
31 18 0.29
32 2 0.03
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.30
Consensus pattern (29 bp):
ATAAAAAAATTATAAAATTTTATAAAGTC
Found at i:3855309 original size:89 final size:86
Alignment explanation
Indices: 3855082--3855311 Score: 241
Period size: 89 Copynumber: 2.6 Consensus size: 86
3855072 AATTAAGTGC
** * * **
3855082 AAAAAAAGGGGGGCTTAATTGCTTTTTTTGAAAAGTTTGAGGGCATTTTTGATGCATTTTGGTAG
1 AAAAAAATAGGGGCTTAATTGCTTTTTTTGAAAAGTTTGAAGGC-TTTTT-ATGCATATTGAAAG
*
3855147 TTCAAGCACCTAATTGAATGAAA
64 TTCAAGCACCCAATTGAATGAAA
***
3855170 AAAAAAAGTAGGGGCTTAATTGCTTCTTTTT---TTTTTTGAAAAAGGTCTTTTTATGCATATTG
1 AAAAAAA-TAGGGGCTTAATTGCTT-TTTTTGAAAAGTTTG---AAGG-CTTTTTATGCATATTG
*
3855232 AAAGTTCAAGTACCCAATTGAATGCAACA
60 AAAGTTCAAGCACCCAATTGAATG-AA-A
3855261 AAAAAAATAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAAGGCTTTTTA
1 AAAAAAATAGGGGCTTAATTGCTTTTTTTG-AAAAGTTTGAAGGCTTTTTA
3855312 CACCCTCAAG
Statistics
Matches: 116, Mismatches: 14, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
87 4 0.03
88 7 0.06
89 56 0.48
90 36 0.31
91 9 0.08
93 4 0.03
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (86 bp):
AAAAAAATAGGGGCTTAATTGCTTTTTTTGAAAAGTTTGAAGGCTTTTTATGCATATTGAAAGTT
CAAGCACCCAATTGAATGAAA
Found at i:3863873 original size:3 final size:3
Alignment explanation
Indices: 3863865--3863899 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
3863855 ATTCATAACA
3863865 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
3863900 ATTTGACATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:3866348 original size:25 final size:24
Alignment explanation
Indices: 3866307--3866373 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 24
3866297 TTCTTAACCC
*
3866307 ATAA-ATTTTTATAAATAAATATATT
1 ATAATATTTTTAT-AATAAATA-AAT
**
3866332 ATAATATTTTTATAATATGTAAAT
1 ATAATATTTTTATAATAAATAAAT
3866356 -TAAT-TTTTTATAATAAAT
1 ATAATATTTTTATAATAAAT
3866374 TTTTTAACCA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
22 12 0.33
23 4 0.11
24 2 0.06
25 10 0.28
26 8 0.22
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (24 bp):
ATAATATTTTTATAATAAATAAAT
Found at i:3875164 original size:16 final size:16
Alignment explanation
Indices: 3875143--3875178 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
3875133 TTTGGTTCGC
3875143 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
3875159 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
3875175 TGTA
1 TGTA
3875179 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:3875446 original size:17 final size:17
Alignment explanation
Indices: 3875406--3875469 Score: 59
Period size: 17 Copynumber: 4.0 Consensus size: 17
3875396 AACATAATTA
3875406 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
*
3875420 TT-TTATAATATATAAT
1 TTATTAAAATATATAAT
3875436 TTGA-TAAAATATATGAAT
1 TT-ATTAAAATATAT-AAT
3875454 TTATTAAAAT-TATAAT
1 TTATTAAAATATATAAT
3875470 ATATAATATT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 2 0.05
14 9 0.22
16 6 0.15
17 13 0.32
18 11 0.27
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:3875512 original size:26 final size:25
Alignment explanation
Indices: 3875472--3875523 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
3875462 ATTATAATAT
3875472 ATAATATTATCAAATATAATTTAAC
1 ATAATATTATCAAATATAATTTAAC
*
3875497 ATAATTATTATTAAATATAATTTAAC
1 ATAA-TATTATCAAATATAATTTAAC
3875523 A
1 A
3875524 AAAATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (25 bp):
ATAATATTATCAAATATAATTTAAC
Found at i:3875589 original size:98 final size:99
Alignment explanation
Indices: 3875385--3875655 Score: 259
Period size: 108 Copynumber: 2.7 Consensus size: 99
3875375 TAAATAATTT
* *** * *
3875385 AATCATATTTTAACATAATTATTATTAAATAT-ATTT-TTTATAATATATAATTTGATAAAATAT
1 AATCATAATTTAACATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAAT-T
* *
3875448 ATGAATTTATTAAAATTATAATATATAATATTATCA
65 ATGAATGTATTAAAATTAT-ATATATAATATTATAA
*
3875484 AAT-ATAATTTAACATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTC
1 AATCATAATTTAACATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTA
* *
3875548 T-TA-GTATTAAATATTCT-TATATGAAT-TTACTAA
66 TGAATGTATTAAA-ATTATATATAT-AATATTA-TAA
3875581 AATCATAATATATAATACTATAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTT
1 AATCATAAT-T-T-A-AC------ATAATTATTATTAAATATAATTTAACAAAAATATATAATTT
3875646 AATAAAATTA
56 AATAAAATTA
3875656 AATATTCTTA
Statistics
Matches: 144, Mismatches: 12, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
96 8 0.06
97 15 0.10
98 37 0.26
99 10 0.07
100 21 0.15
101 1 0.01
102 2 0.01
108 50 0.35
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (99 bp):
AATCATAATTTAACATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTA
TGAATGTATTAAAATTATATATATAATATTATAA
Found at i:3887297 original size:18 final size:18
Alignment explanation
Indices: 3887270--3887362 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
3887260 TACGACCGTT
3887270 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
3887288 TACGGCACTATTCACATA
1 TACGGTACTATTCACGTA
* *
3887306 TACAGTACTATTTACGTA
1 TACGGTACTATTCACGTA
*
3887324 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
3887342 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
3887360 TAC
1 TAC
3887363 AGTAGTTGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:3897100 original size:28 final size:26
Alignment explanation
Indices: 3897039--3897103 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 26
3897029 CAAAATATTA
3897039 TATTTAAT-TAATTTTAATATATTTT
1 TATTTAATATAATTTTAATATATTTT
* *
3897064 TA-AT-ATATAATGTTTTATATTATTTT
1 TATTTAATATAAT-TTTAATA-TATTTT
3897090 TATTTAATATAATT
1 TATTTAATATAATT
3897104 ATTCTTCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
23 2 0.06
24 5 0.16
25 8 0.25
26 8 0.25
27 2 0.06
28 7 0.22
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (26 bp):
TATTTAATATAATTTTAATATATTTT
Found at i:3897205 original size:2 final size:2
Alignment explanation
Indices: 3897198--3897238 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
3897188 AACCAACCTT
3897198 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3897239 TCATTCATAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3900456 original size:10 final size:10
Alignment explanation
Indices: 3900443--3900529 Score: 66
Period size: 9 Copynumber: 9.4 Consensus size: 10
3900433 AAAAAATATT
*
3900443 TTTTTTATAA
1 TTTTTAATAA
3900453 -TTTT-ATAA
1 TTTTTAATAA
3900461 TTTTTAATAA
1 TTTTTAATAA
3900471 -TTTTAATAA
1 TTTTTAATAA
3900480 TTTTTAAT--
1 TTTTTAATAA
*
3900488 TTTTAAAAATAA
1 TTTT--TAATAA
*
3900500 ATTTT-AT-A
1 TTTTTAATAA
3900508 TTTTTAA-AA
1 TTTTTAATAA
3900517 TTTTTAA-AA
1 TTTTTAATAA
3900526 TTTT
1 TTTT
3900530 AAAAACGTAA
Statistics
Matches: 64, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
8 13 0.20
9 34 0.53
10 14 0.22
12 3 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:3900464 original size:19 final size:20
Alignment explanation
Indices: 3900437--3900484 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
3900427 ATTATAAAAA
* *
3900437 AATATTTTTTTTATAATTTT
1 AATAATTTTTTAATAATTTT
3900457 -ATAA-TTTTTAATAATTTT
1 AATAATTTTTTAATAATTTT
3900475 AATAATTTTT
1 AATAATTTTT
3900485 AATTTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 13 0.54
19 7 0.29
20 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
AATAATTTTTTAATAATTTT
Found at i:3900474 original size:29 final size:29
Alignment explanation
Indices: 3900437--3900529 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 29
3900427 ATTATAAAAA
*
3900437 AATATTTTTTTTATAATTTTATAATTTTT
1 AATAATTTTTTTATAATTTTATAATTTTT
*
3900466 AATAA--TTTTAATAATTTT-TAATTTTT
1 AATAATTTTTTTATAATTTTATAATTTTT
* ** * *
3900492 AAAAATAAATTTTATATTTTTAAAATTTTT
1 AATAAT-TTTTTTATAATTTTATAATTTTT
3900522 AA-AATTTT
1 AATAATTTT
3900530 AAAAACGTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
26 12 0.24
27 12 0.24
28 1 0.02
29 17 0.33
30 9 0.18
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (29 bp):
AATAATTTTTTTATAATTTTATAATTTTT
Found at i:3900498 original size:20 final size:21
Alignment explanation
Indices: 3900475--3900516 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
3900465 TAATAATTTT
*
3900475 AATAATTTTTA-ATTTTTAAA
1 AATAAATTTTATATTTTTAAA
3900495 AATAAATTTTATATTTTTAAA
1 AATAAATTTTATATTTTTAAA
3900516 A
1 A
3900517 TTTTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AATAAATTTTATATTTTTAAA
Found at i:3900513 original size:38 final size:39
Alignment explanation
Indices: 3900457--3900534 Score: 106
Period size: 38 Copynumber: 2.0 Consensus size: 39
3900447 TTATAATTTT
* *
3900457 ATAATTTTTAATAATTTTAATAATTTTT-AATTTTTAAAA
1 ATAAATTTTAATAATTTTAA-AATTTTTAAAATTTTAAAA
*
3900496 ATAAATTTT-ATATTTTTAAAATTTTTAAAATTTTAAAA
1 ATAAATTTTAATAATTTTAAAATTTTTAAAATTTTAAAA
3900534 A
1 A
3900535 CGTAAATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
37 7 0.20
38 20 0.57
39 8 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (39 bp):
ATAAATTTTAATAATTTTAAAATTTTTAAAATTTTAAAA
Found at i:3905239 original size:31 final size:31
Alignment explanation
Indices: 3905204--3905266 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
3905194 TGCATACCTA
3905204 CAATAACCCAAATTAAGAAAAAACCAAACTT
1 CAATAACCCAAATTAAGAAAAAACCAAACTT
3905235 CAATAACCCAAATTAAGAAAAAACCAAACTT
1 CAATAACCCAAATTAAGAAAAAACCAAACTT
3905266 C
1 C
3905267 CCAACCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.57, C:0.24, G:0.03, T:0.16
Consensus pattern (31 bp):
CAATAACCCAAATTAAGAAAAAACCAAACTT
Found at i:3908518 original size:24 final size:25
Alignment explanation
Indices: 3908491--3908540 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
3908481 ATAAGAAAAT
*
3908491 AAATATAC-AAAAAAAAATGCCCTA
1 AAATATACAAAAAAAAAATGCACTA
3908515 AAATATACAAAAAAAAAATGCACTA
1 AAATATACAAAAAAAAAATGCACTA
3908540 A
1 A
3908541 GTACAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.66, C:0.14, G:0.04, T:0.16
Consensus pattern (25 bp):
AAATATACAAAAAAAAAATGCACTA
Found at i:3909752 original size:18 final size:17
Alignment explanation
Indices: 3909719--3909757 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
3909709 TTTTATAAAT
3909719 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
3909737 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
3909754 TGTG
1 TGTG
3909758 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:3910027 original size:22 final size:23
Alignment explanation
Indices: 3909976--3910042 Score: 127
Period size: 22 Copynumber: 3.0 Consensus size: 23
3909966 GTGTTATTGA
3909976 TCAGTGGTAGCTTCGGCTACATC
1 TCAGTGGTAGCTTCGGCTACATC
3909999 TCAGTGGTAGCTTCGGCTACAT-
1 TCAGTGGTAGCTTCGGCTACATC
3910021 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
3910043 ATCAATGTGG
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 22 0.50
23 22 0.50
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATC
Found at i:3912555 original size:30 final size:30
Alignment explanation
Indices: 3912521--3912584 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
3912511 TGCAACAATT
*
3912521 AAGATAAGTTCTCAATTAAATTAATGTGGG
1 AAGATAAGTTCTCAATTAAATTAATGTGGA
3912551 AAGATAAGTTCTCAATTAAATTAATGTGGA
1 AAGATAAGTTCTCAATTAAATTAATGTGGA
3912581 AAGA
1 AAGA
3912585 ATATTACTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (30 bp):
AAGATAAGTTCTCAATTAAATTAATGTGGA
Found at i:3914718 original size:14 final size:14
Alignment explanation
Indices: 3914699--3914739 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
3914689 TTTTTTGGCC
3914699 AAAAAGCGCCGCTA
1 AAAAAGCGCCGCTA
* *
3914713 AAAAAGTGCCGC-C
1 AAAAAGCGCCGCTA
3914726 AAAAA-CGCCGCTA
1 AAAAAGCGCCGCTA
3914739 A
1 A
3914740 CTTTAGCGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
12 5 0.23
13 6 0.27
14 11 0.50
ACGTcount: A:0.44, C:0.29, G:0.20, T:0.07
Consensus pattern (14 bp):
AAAAAGCGCCGCTA
Found at i:3914788 original size:43 final size:43
Alignment explanation
Indices: 3914740--3915073 Score: 435
Period size: 43 Copynumber: 7.8 Consensus size: 43
3914730 ACGCCGCTAA
* * *
3914740 CTTTAGCGGCGCTTTTACC-ACAAATGCCGCTAAAGACCAAGAT
1 CTTTAGCGGCGCTTTT-CCTACAAACGCCGCTAAAGACCATGAC
* * * *
3914783 CTTTAGCAGCGCTTTTCCTACAAACGCCACTAAAGACCAAGAT
1 CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCATGAC
* *
3914826 CTTTAGCGGCGCTTCTCCTACAGACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCATGAC
* *
3914869 CTTTAACGGCGCTTCTCCTACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCATGAC
*
3914912 CTTTAGCGGCGCTTCTCCTACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCATGAC
*
3914955 CTTTAGCGGCGCTTTTCCTACAAATGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCATGAC
* *
3914998 CTTTAGCGGCACTTTTCCCT-CAAACGCCGCTATAGA--ATAGAC
1 CTTTAGCGGCGCTTTT-CCTACAAACGCCGCTAAAGACCAT-GAC
* * *
3915040 CTTTAGCGACACTTTTGAC-ACAAACGCCGCTAAA
1 CTTTAGCGGCGCTTTT-CCTACAAACGCCGCTAAA
3915074 AATATATCTT
Statistics
Matches: 266, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
41 2 0.01
42 34 0.13
43 227 0.85
44 3 0.01
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCATGAC
Found at i:3920282 original size:14 final size:14
Alignment explanation
Indices: 3920263--3920292 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
3920253 CCCGAATCCC
*
3920263 TAACCCCTAACCAT
1 TAACCCCTAAACAT
3920277 TAACCCCTAAACAT
1 TAACCCCTAAACAT
3920291 TA
1 TA
3920293 TTTAATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (14 bp):
TAACCCCTAAACAT
Found at i:3922770 original size:9 final size:9
Alignment explanation
Indices: 3922756--3922822 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
3922746 TTTGGTTAAA
3922756 AATTAACCG
1 AATTAACCG
*
3922765 AATTAACCA
1 AATTAACCG
3922774 AATTAACCG
1 AATTAACCG
*
3922783 AATTACCCG
1 AATTAACCG
3922792 AATTAACCG
1 AATTAACCG
*
3922801 AATTAACCA
1 AATTAACCG
*
3922810 AATTAACCT
1 AATTAACCG
3922819 AATT
1 AATT
3922823 GAATCATACA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.46, C:0.22, G:0.06, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:3922778 original size:18 final size:18
Alignment explanation
Indices: 3922755--3922822 Score: 109
Period size: 18 Copynumber: 3.8 Consensus size: 18
3922745 TTTTGGTTAA
3922755 AAATTAACCGAATTAACC
1 AAATTAACCGAATTAACC
*
3922773 AAATTAACCGAATTACCC
1 AAATTAACCGAATTAACC
*
3922791 GAATTAACCGAATTAACC
1 AAATTAACCGAATTAACC
*
3922809 AAATTAACCTAATT
1 AAATTAACCGAATT
3922823 GAATCATACA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.47, C:0.22, G:0.06, T:0.25
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:3922947 original size:18 final size:18
Alignment explanation
Indices: 3922924--3922975 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
3922914 AATTTTTATG
**
3922924 ATTGGGTTGGATTGGGTA
1 ATTGGGTTGGATTGAATA
*
3922942 ATTGGGTTGAATTGAATA
1 ATTGGGTTGGATTGAATA
*
3922960 CTTGGGTTTGGATTGA
1 ATTGGG-TTGGATTGA
3922976 GTTTAGGTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 20 0.71
19 8 0.29
ACGTcount: A:0.21, C:0.02, G:0.37, T:0.40
Consensus pattern (18 bp):
ATTGGGTTGGATTGAATA
Found at i:3923425 original size:20 final size:21
Alignment explanation
Indices: 3923379--3923418 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3923369 GAAATGAAAG
3923379 AAATTACAAATACTTTAAAAA
1 AAATTACAAATACTTTAAAAA
3923400 AAATTACAAATAC-TTAAAA
1 AAATTACAAATACTTTAAAA
3923419 TGTATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (21 bp):
AAATTACAAATACTTTAAAAA
Found at i:3927203 original size:29 final size:28
Alignment explanation
Indices: 3927168--3927232 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 28
3927158 TACTAAAATT
3927168 AAATAAATCTCAAATATAAGTGTCATAAA
1 AAATAAAT-TCAAATATAAGTGTCATAAA
***
3927197 AAATAAAATTTTGATATAAGTGTCATAAA
1 AAAT-AAATTCAAATATAAGTGTCATAAA
3927226 AAATAAA
1 AAATAAA
3927233 ATTTTGATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 3 0.09
29 25 0.78
30 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (28 bp):
AAATAAATTCAAATATAAGTGTCATAAA
Found at i:3927233 original size:29 final size:29
Alignment explanation
Indices: 3927181--3927241 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
3927171 TAAATCTCAA
3927181 ATATAAGTGTCATAAAAAATAAAATTTTG
1 ATATAAGTGTCATAAAAAATAAAATTTTG
3927210 ATATAAGTGTCATAAAAAATAAAATTTTG
1 ATATAAGTGTCATAAAAAATAAAATTTTG
3927239 ATA
1 ATA
3927242 AAAAAAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.34
Consensus pattern (29 bp):
ATATAAGTGTCATAAAAAATAAAATTTTG
Found at i:3933582 original size:10 final size:9
Alignment explanation
Indices: 3933564--3933614 Score: 50
Period size: 10 Copynumber: 5.4 Consensus size: 9
3933554 AATATATAAA
*
3933564 TTTTGAAAT
1 TTTTAAAAT
3933573 TTTTATAAAT
1 TTTTA-AAAT
3933583 ATTTTAAAA-
1 -TTTTAAAAT
3933592 TTTTAAAAT
1 TTTTAAAAT
*
3933601 TATTTTAAAT
1 T-TTTAAAAT
3933611 TTTT
1 TTTT
3933615 TGTTGAGAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
8 8 0.22
9 8 0.22
10 15 0.42
11 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:3933593 original size:28 final size:27
Alignment explanation
Indices: 3933544--3933615 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 27
3933534 TCTTAAAGTT
* * *
3933544 AATTTTTAAAAATA-TATAAATTTTGA
1 AATTTTTATAAATATTTTAAATTTTAA
3933570 AATTTTTATAAATATTTTAAAATTTTAA
1 AATTTTTATAAATATTTT-AAATTTTAA
*
3933598 AATTATTT-TAAATTTTTT
1 AATT-TTTATAAATATTTT
3933616 GTTGAGAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 13 0.33
27 2 0.05
28 21 0.54
29 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
AATTTTTATAAATATTTTAAATTTTAA
Found at i:3933604 original size:19 final size:19
Alignment explanation
Indices: 3933547--3933613 Score: 68
Period size: 18 Copynumber: 3.6 Consensus size: 19
3933537 TAAAGTTAAT
* *
3933547 TTTTAAAAATATATAAAT-
1 TTTTAAAATTTTATAAATA
* *
3933565 TTTGAAATTTTTATAAATA
1 TTTTAAAATTTTATAAATA
3933584 TTTTAAAATTTTA-AAATTA
1 TTTTAAAATTTTATAAA-TA
3933603 TTTT-AAATTTT
1 TTTTAAAATTTT
3933614 TTGTTGAGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
18 24 0.59
19 17 0.41
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (19 bp):
TTTTAAAATTTTATAAATA
Found at i:3933614 original size:19 final size:19
Alignment explanation
Indices: 3933558--3933614 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
3933548 TTTAAAAATA
*
3933558 TATAAAT-TTTGAAATTTT
1 TATAAATATTTTAAATTTT
*
3933576 TATAAATATTTTAAAATTT
1 TATAAATATTTTAAATTTT
3933595 TA-AAATTATTTTAAATTTT
1 TATAAA-TATTTTAAATTTT
3933614 T
1 T
3933615 TGTTGAGAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.29
19 24 0.71
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:3934035 original size:22 final size:23
Alignment explanation
Indices: 3933973--3934038 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 23
3933963 ATTTAAATTA
* *
3933973 TAAAATTATTTGATATAT-TATT
1 TAAAATTATTTGATAAATATAAT
* * **
3933995 TAAAATTAATTAAGGAATATAAT
1 TAAAATTATTTGATAAATATAAT
3934018 T-AAATTATTTGATAAATATAA
1 TAAAATTATTTGATAAATATAA
3934039 ATTTTGAATT
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
22 29 0.88
23 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (23 bp):
TAAAATTATTTGATAAATATAAT
Found at i:3939255 original size:16 final size:16
Alignment explanation
Indices: 3939216--3939256 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
3939206 TTTAATTAAA
*
3939216 ATTAAAACTAATTGTT
1 ATTAAAATTAATTGTT
*
3939232 ATCAAAATTAATTGTT
1 ATTAAAATTAATTGTT
3939248 ATTAAAATT
1 ATTAAAATT
3939257 GTATCAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (16 bp):
ATTAAAATTAATTGTT
Found at i:3939366 original size:43 final size:42
Alignment explanation
Indices: 3939318--3939465 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 42
3939308 TTTGTTAGTA
3939318 AAATTATTAATTATTAATTATATTAATTGTTACTAAAATTATC
1 AAATTATTAATTATTAATTATATTAATTGTTA-TAAAATTATC
* * * *
3939361 AAATTATTAATTATTAATTGTTACTAATAT-TT-T---GTTAGTA
1 AAATTATTAATTATTAATT-ATATTAAT-TGTTATAAAATTA-TC
* *
3939401 AAATTATTAATTGTTAATTGTATTAATTGTTAGTAAAATTATC
1 AAATTATTAATTATTAATTATATTAATTGTTA-TAAAATTATC
3939444 AAATTATATCAAATTATTAATT
1 AAATTAT-T--AATTATTAATT
3939466 GTTAATTGTA
Statistics
Matches: 83, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
38 1 0.01
39 11 0.13
40 19 0.23
41 1 0.01
42 1 0.01
43 27 0.33
44 12 0.14
45 1 0.01
46 10 0.12
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.49
Consensus pattern (42 bp):
AAATTATTAATTATTAATTATATTAATTGTTATAAAATTATC
Found at i:3939381 original size:34 final size:35
Alignment explanation
Indices: 3939309--3939387 Score: 117
Period size: 34 Copynumber: 2.3 Consensus size: 35
3939299 ATCTAACATT
* *
3939309 TTGTTAGTAAAATTATTAATTATTAATTATATTAA
1 TTGTTACTAAAATTATAAATTATTAATTATATTAA
3939344 TTGTTACTAAAATTATCAAATTATTAA-T-TATTAA
1 TTGTTACTAAAATTAT-AAATTATTAATTATATTAA
3939378 TTGTTACTAA
1 TTGTTACTAA
3939388 TATTTTGTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
34 16 0.39
35 16 0.39
36 9 0.22
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (35 bp):
TTGTTACTAAAATTATAAATTATTAATTATATTAA
Found at i:3939402 original size:83 final size:85
Alignment explanation
Indices: 3939301--3939469 Score: 279
Period size: 83 Copynumber: 2.0 Consensus size: 85
3939291 TTTATAAAAT
3939301 CTAACATTTTGTTAGTAAAATTATTAATTATTAATTATATTAATTGTTACTAAAATTATCAAATT
1 CTAACATTTTGTTAGTAAAATTATTAATTATTAATTATATTAATTGTTACTAAAATTATCAAATT
3939366 AT-T-AATTATTAATTGTTA
66 ATATAAATTATTAATTGTTA
* * * *
3939384 CTAATATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTTAGTAAAATTATCAAATT
1 CTAACATTTTGTTAGTAAAATTATTAATTATTAATTATATTAATTGTTACTAAAATTATCAAATT
3939449 ATATCAAATTATTAATTGTTA
66 ATAT-AAATTATTAATTGTTA
3939470 ATTGTATTAA
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
83 63 0.80
84 1 0.01
86 15 0.19
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (85 bp):
CTAACATTTTGTTAGTAAAATTATTAATTATTAATTATATTAATTGTTACTAAAATTATCAAATT
ATATAAATTATTAATTGTTA
Found at i:3939411 original size:33 final size:34
Alignment explanation
Indices: 3939369--3939442 Score: 105
Period size: 33 Copynumber: 2.2 Consensus size: 34
3939359 TCAAATTATT
*
3939369 AATTATTAATTGTTACTAATATT-TTGTTAGTAA
1 AATTATTAATTGTTAATAATATTATTGTTAGTAA
**
3939402 AATTATTAATTGTTAATTGTATTAATTGTTAGTAA
1 AATTATTAATTGTTAATAATATT-ATTGTTAGTAA
3939437 AATTAT
1 AATTAT
3939443 CAAATTATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 20 0.56
35 16 0.44
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.51
Consensus pattern (34 bp):
AATTATTAATTGTTAATAATATTATTGTTAGTAA
Found at i:3942678 original size:26 final size:26
Alignment explanation
Indices: 3942649--3942811 Score: 85
Period size: 26 Copynumber: 6.5 Consensus size: 26
3942639 CTCTCTTAAG
3942649 CCATATAA-CAGGAAGCTCACAAAGAA
1 CCAT-TAATCAGGAAGCTCACAAAGAA
*
3942675 CCATTAATCGGGAAGCTCACAAAG-A
1 CCATTAATCAGGAAGCTCACAAAGAA
* * * **
3942700 GC-TT-ATCAGGAAGCTTATC--CGGG
1 CCATTAATCAGGAAGCTCA-CAAAGAA
* * *
3942723 CTATATAAT-AGGAAGCTCA-TAAGAG
1 CCAT-TAATCAGGAAGCTCACAAAGAA
*
3942748 CCA-TAATCAGGAAGTTCACAAAGAA
1 CCATTAATCAGGAAGCTCACAAAGAA
** * *
3942773 CTTTTAA-CTAGGAAGCTCACGAAGAG
1 CCATTAATC-AGGAAGCTCACAAAGAA
*
3942799 CCTTTAATCAGGA
1 CCATTAATCAGGA
3942812 GTTCCGGATA
Statistics
Matches: 103, Mismatches: 21, Indels: 26
0.69 0.14 0.17
Matches are distributed among these distances:
22 1 0.01
23 15 0.15
24 13 0.13
25 25 0.24
26 48 0.47
27 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
CCATTAATCAGGAAGCTCACAAAGAA
Found at i:3944036 original size:40 final size:40
Alignment explanation
Indices: 3943987--3944125 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
3943977 AACACACCAG
*
3943987 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
* * * *
3944027 TTTGACACCCAGTGTCTCAT-TGTTAAATCGAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
* * * *
3944064 -TTGACACTCAGTGCCTCATCGAATTAATCCGAAGTAGTAA
1 TTTGACACCCAGTGCCTCATCGGA-TAATTCGAAGTAATAA
*
3944104 TTTGACACCCAGTGTCTCATCG
1 TTTGACACCCAGTGCCTCATCG
3944126 ACTCGAAGTC
Statistics
Matches: 79, Mismatches: 15, Indels: 9
0.77 0.15 0.09
Matches are distributed among these distances:
36 17 0.22
37 2 0.03
38 10 0.13
39 11 0.14
40 20 0.25
41 19 0.24
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
Found at i:3945033 original size:10 final size:10
Alignment explanation
Indices: 3945014--3945068 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
3945004 TTCCTTCCTT
*
3945014 TTTCTTTTTC
1 TTTCTGTTTC
3945024 TTTCTGTTTC
1 TTTCTGTTTC
* *
3945034 ATT-TATTTC
1 TTTCTGTTTC
*
3945043 TTTCTTTTTC
1 TTTCTGTTTC
3945053 TTTCTGTTTC
1 TTTCTGTTTC
3945063 GTTTCT
1 -TTTCT
3945069 ATCTTTCTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
9 7 0.19
10 25 0.68
11 5 0.14
ACGTcount: A:0.04, C:0.18, G:0.05, T:0.73
Consensus pattern (10 bp):
TTTCTGTTTC
Found at i:3945048 original size:29 final size:29
Alignment explanation
Indices: 3945014--3945078 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
3945004 TTCCTTCCTT
*
3945014 TTTCTTTTTCTTTCTGTTTCATTTATTTC
1 TTTCTTTTTCTTTCTGTTTCATTTATATC
* *
3945043 TTTCTTTTTCTTTCTGTTTCGTTTCTATC
1 TTTCTTTTTCTTTCTGTTTCATTTATATC
3945072 TTTCTTT
1 TTTCTTT
3945079 CTTTCTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.05, C:0.18, G:0.05, T:0.72
Consensus pattern (29 bp):
TTTCTTTTTCTTTCTGTTTCATTTATATC
Found at i:3945164 original size:27 final size:25
Alignment explanation
Indices: 3945100--3945170 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 25
3945090 TTCTTTATTT
3945100 TATA-ATTATAATTATAATATAATA
1 TATATATTATAATTATAATATAATA
3945124 TATATACTTAATAATTA-AGATATAATA
1 TATATA-TT-ATAATTATA-ATATAATA
3945151 TTATAATATTATAATATATA
1 -TAT-ATATTATAAT-TATA
3945171 TTTTAAGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
24 4 0.10
25 1 0.03
26 3 0.08
27 20 0.51
28 7 0.18
29 4 0.10
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (25 bp):
TATATATTATAATTATAATATAATA
Found at i:3946619 original size:30 final size:30
Alignment explanation
Indices: 3946584--3946642 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
3946574 TTTAATTAAT
*
3946584 TATCAT-CTTTTATTTTTTTTCACTTTCTAA
1 TATCATCCTTTTATTTATTTT-ACTTTCTAA
* *
3946614 TATCATCCTTTTCTTTATTTTATTTTCTA
1 TATCATCCTTTTATTTATTTTACTTTCTA
3946643 TGGATGAGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (30 bp):
TATCATCCTTTTATTTATTTTACTTTCTAA
Found at i:3950863 original size:22 final size:21
Alignment explanation
Indices: 3950833--3950878 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3950823 TTTTTAAGTT
* *
3950833 TATAACATGTTTATTTATTTTA
1 TATAACATG-TAATTTATATTA
*
3950855 TATATCATGTAATTTATATTA
1 TATAACATGTAATTTATATTA
3950876 TAT
1 TAT
3950879 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (21 bp):
TATAACATGTAATTTATATTA
Found at i:3956553 original size:41 final size:41
Alignment explanation
Indices: 3956496--3956578 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
3956486 CGATTAAATG
3956496 ATGTGGGTTTTGAGGGCAGGCGTTTTACTTGGGAGAGGGGC
1 ATGTGGGTTTTGAGGGCAGGCGTTTTACTTGGGAGAGGGGC
3956537 ATGTGGGTTTTGAGGGCAGGCGTTTTACTTGGGAGAGGGGC
1 ATGTGGGTTTTGAGGGCAGGCGTTTTACTTGGGAGAGGGGC
3956578 A
1 A
3956579 ACTTACCAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.16, C:0.10, G:0.46, T:0.29
Consensus pattern (41 bp):
ATGTGGGTTTTGAGGGCAGGCGTTTTACTTGGGAGAGGGGC
Found at i:3957867 original size:12 final size:12
Alignment explanation
Indices: 3957850--3957880 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
3957840 TTAAATGTCA
3957850 TCTGTTGCTTAT
1 TCTGTTGCTTAT
3957862 TCTGTTGCTTAT
1 TCTGTTGCTTAT
*
3957874 TCAGTTG
1 TCTGTTG
3957881 TCATAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.16, G:0.19, T:0.55
Consensus pattern (12 bp):
TCTGTTGCTTAT
Found at i:3961764 original size:29 final size:29
Alignment explanation
Indices: 3961732--3961789 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
3961722 ACAATTGGAC
3961732 CTAAATT-TT-GAAATATGAAAGTAGAGAGA
1 CTAAATTCTTGGAAATA--AAAGTAGAGAGA
3961761 CTAAATTCTTGGAAATAAAAGTAGAGAGA
1 CTAAATTCTTGGAAATAAAAGTAGAGAGA
3961790 TTACATTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 19 0.70
30 2 0.07
31 6 0.22
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (29 bp):
CTAAATTCTTGGAAATAAAAGTAGAGAGA
Found at i:3965112 original size:88 final size:88
Alignment explanation
Indices: 3964961--3965130 Score: 331
Period size: 88 Copynumber: 1.9 Consensus size: 88
3964951 CTAGAAGAAA
*
3964961 CCCATTAGACTCAAATTGTGAGATTTTCCAGCTAATTTGGAAATTATTAGAATGCTCCTGAAATA
1 CCCATTAGACTCAAATTGTGAGATTTTCCAGCTAATTTGGAAATTATTAGAATGCTCCAGAAATA
3965026 AACCCCCAAAAACAAGGGAAAAC
66 AACCCCCAAAAACAAGGGAAAAC
3965049 CCCATTAGACTCAAATTGTGAGATTTTCCAGCTAATTTGGAAATTATTAGAATGCTCCAGAAATA
1 CCCATTAGACTCAAATTGTGAGATTTTCCAGCTAATTTGGAAATTATTAGAATGCTCCAGAAATA
3965114 AACCCCCAAAAACAAGG
66 AACCCCCAAAAACAAGG
3965131 AAAGATACCT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (88 bp):
CCCATTAGACTCAAATTGTGAGATTTTCCAGCTAATTTGGAAATTATTAGAATGCTCCAGAAATA
AACCCCCAAAAACAAGGGAAAAC
Found at i:3967673 original size:21 final size:21
Alignment explanation
Indices: 3967647--3967689 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
3967637 TATGATTAGA
3967647 ATTGTTAAATTGGGCGGCCTG
1 ATTGTTAAATTGGGCGGCCTG
3967668 ATTGTTAAATTGGGCGGCCTG
1 ATTGTTAAATTGGGCGGCCTG
3967689 A
1 A
3967690 GGTGTAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.14, G:0.33, T:0.33
Consensus pattern (21 bp):
ATTGTTAAATTGGGCGGCCTG
Found at i:3973785 original size:47 final size:43
Alignment explanation
Indices: 3973734--3973822 Score: 115
Period size: 47 Copynumber: 2.0 Consensus size: 43
3973724 ATAAATGTAA
* *
3973734 TTAAATTATAAGTATTTTTAAATATGTAATAATTATCACAATATTTG
1 TTAAATTATAAGTATTATTAAAT-T-T-ATAATTATAACAA-ATTTG
*
3973781 TTAAATTATAATTATTATTAAATTTATAATTATAACAAATTT
1 TTAAATTATAAGTATTATTAAATTTATAATTATAACAAATTT
3973823 TATTTTATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 4 0.10
44 12 0.31
45 1 0.03
46 1 0.03
47 21 0.54
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (43 bp):
TTAAATTATAAGTATTATTAAATTTATAATTATAACAAATTTG
Found at i:3974694 original size:30 final size:32
Alignment explanation
Indices: 3974636--3974694 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
3974626 CTAAGGTAAA
3974636 ATCGAAGAAATCAATTTAAAATTAAAATCAAG
1 ATCGAAGAAATCAATTTAAAATTAAAATCAAG
*
3974668 ATCGAA-AAAT-ATATTTTAAA-TAAAATC
1 ATCGAAGAAATCA-ATTTAAAATTAAAATC
3974695 GAATTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 8 0.32
31 11 0.44
32 6 0.24
ACGTcount: A:0.56, C:0.08, G:0.07, T:0.29
Consensus pattern (32 bp):
ATCGAAGAAATCAATTTAAAATTAAAATCAAG
Found at i:3977244 original size:31 final size:31
Alignment explanation
Indices: 3977198--3977279 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 31
3977188 AACAACCGAG
* *
3977198 TGACTTAAATAAAAACTTTCGAATAGTTCAA
1 TGACTTAAATGAAAACTTTCGAATAATTCAA
* * *
3977229 TGACTCAAATGAAAACTTTTGAATAATTTAA
1 TGACTTAAATGAAAACTTTCGAATAATTCAA
3977260 TGACTTAAATGAAAACTTTC
1 TGACTTAAATGAAAACTTTC
3977280 AAAACAATTA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (31 bp):
TGACTTAAATGAAAACTTTCGAATAATTCAA
Found at i:3977291 original size:31 final size:30
Alignment explanation
Indices: 3977198--3977293 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 30
3977188 AACAACCGAG
* * * *
3977198 TGACTTAAATAAAAACTTTCGAATAGTTCAA
1 TGACTTAAATGAAAACTTTCAAAAAATT-AA
* * * *
3977229 TGACTCAAATGAAAACTTTTGAATAATTTAA
1 TGACTTAAATGAAAAC-TTTCAAAAAATTAA
3977260 TGACTTAAATGAAAACTTTCAAAACAATTAA
1 TGACTTAAATGAAAACTTTCAAAA-AATTAA
3977291 TGA
1 TGA
3977294 TATTTTTTAA
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
30 6 0.12
31 39 0.75
32 7 0.13
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.32
Consensus pattern (30 bp):
TGACTTAAATGAAAACTTTCAAAAAATTAA
Found at i:3979142 original size:24 final size:24
Alignment explanation
Indices: 3979115--3979166 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
3979105 AATCAAAGTC
* *
3979115 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
3979139 AAATATATTATACTTATAAATACT
1 AAATATATTATACTAATAAATACT
3979163 AAAT
1 AAAT
3979167 CTTCTGGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:3979874 original size:24 final size:24
Alignment explanation
Indices: 3979859--3979910 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
3979849 AATCAAAGTC
3979859 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
3979883 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
3979907 AAAT
1 AAAT
3979911 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:3982440 original size:14 final size:14
Alignment explanation
Indices: 3982421--3982460 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
3982411 TATAAGTGCA
*
3982421 TATATAATATAAAG
1 TATATAAAATAAAG
*
3982435 TATATAAAAAAAAG
1 TATATAAAATAAAG
*
3982449 TAAATAAAATAA
1 TATATAAAATAA
3982461 GGATATAAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (14 bp):
TATATAAAATAAAG
Found at i:3986760 original size:25 final size:25
Alignment explanation
Indices: 3986723--3986776 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
3986713 TATTAAATAG
3986723 AAAATCTAATA-TTATCACGTTGAAAT
1 AAAATCTAATATTTAT--CGTTGAAAT
*
3986749 AAAAT-TAATATTTATTGTTGAAAT
1 AAAATCTAATATTTATCGTTGAAAT
3986773 AAAA
1 AAAA
3986777 CATAACCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 12 0.46
25 5 0.19
26 9 0.35
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.37
Consensus pattern (25 bp):
AAAATCTAATATTTATCGTTGAAAT
Found at i:3994238 original size:3 final size:3
Alignment explanation
Indices: 3994230--3994256 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
3994220 ATTAATTAAT
3994230 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
3994257 AGTATTTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4003143 original size:18 final size:17
Alignment explanation
Indices: 4003113--4003149 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
4003103 ATATAATATA
4003113 ATATGTTTATATTAACT
1 ATATGTTTATATTAACT
*
4003130 ATATGTTATGTATTAACT
1 ATATGTT-TATATTAACT
4003148 AT
1 AT
4003150 TATAATAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.51
Consensus pattern (17 bp):
ATATGTTTATATTAACT
Found at i:4004298 original size:140 final size:141
Alignment explanation
Indices: 4004051--4004303 Score: 318
Period size: 140 Copynumber: 1.8 Consensus size: 141
4004041 ATCTACTTAC
4004051 CAAGTTCAAAGGCCAAAAGTTACATTATCCCCATTTTTTTCACGGTCATTAACAGAATGAGCTTA
1 CAAGTTCAAAGGCCAAAAGTTACATTATCCCCATTTTTTTCACGGTCATTAACAGAATGAGCTTA
** * ****
4004116 AATGGATAACAATTTTCAAGTTCAGGGGTAAAAGTGGATAAAA-AAAAGTTCAAGAGGCAATGTA
66 AATAAATAACAATTTTCAAGTTAAAAAATAAAAGTGGATAAAATAAAAGTTCAAGAGGCAATGTA
4004180 GATTAAATTGT
131 GATTAAATTGT
** * * * *
4004191 CAAGTTCAGGGGCTAAAAGTTACATTATTCCCATTTTTTTCACTGTCATTGAC-GAAATGGAG-T
1 CAAGTTCAAAGGCCAAAAGTTACATTATCCCCATTTTTTTCACGGTCATTAACAG-AAT-GAGCT
4004254 TAAATAAATAACAATTTTCAAGTTAAAAAATCAAAA-TAGG-TAAAATAAAA
64 TAAATAAATAACAATTTTCAAGTTAAAAAAT-AAAAGT-GGATAAAATAAAA
4004304 AATTAGGGAC
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
139 1 0.01
140 81 0.85
141 13 0.14
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (141 bp):
CAAGTTCAAAGGCCAAAAGTTACATTATCCCCATTTTTTTCACGGTCATTAACAGAATGAGCTTA
AATAAATAACAATTTTCAAGTTAAAAAATAAAAGTGGATAAAATAAAAGTTCAAGAGGCAATGTA
GATTAAATTGT
Found at i:4005498 original size:2 final size:2
Alignment explanation
Indices: 4005491--4005525 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4005481 GGCCACAAAA
4005491 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4005526 TTTCAGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4009672 original size:21 final size:21
Alignment explanation
Indices: 4009646--4009703 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
4009636 TGACCAAAAA
4009646 CCTTCCACATGGTCTTGTAAC
1 CCTTCCACATGGTCTTGTAAC
* *
4009667 CCTTCCATATGGTCGTGTAAC
1 CCTTCCACATGGTCTTGTAAC
*
4009688 CCATTCCACACGGTCT
1 CC-TTCCACATGGTCT
4009704 ATAGCCTCCT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 21 0.68
22 10 0.32
ACGTcount: A:0.19, C:0.34, G:0.16, T:0.31
Consensus pattern (21 bp):
CCTTCCACATGGTCTTGTAAC
Found at i:4010565 original size:41 final size:41
Alignment explanation
Indices: 4010520--4010603 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
4010510 GTCAGTGGTC
4010520 TTATGTTCGAATCTCTACATGTGCATTGAGGAATATTATTT
1 TTATGTTCGAATCTCTACATGTGCATTGAGGAATATTATTT
*
4010561 TTATGTTCGAATCTCTACGTGTGCATTGAGGAATATTATTT
1 TTATGTTCGAATCTCTACATGTGCATTGAGGAATATTATTT
4010602 TT
1 TT
4010604 TCACTTCTCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (41 bp):
TTATGTTCGAATCTCTACATGTGCATTGAGGAATATTATTT
Found at i:4010699 original size:22 final size:22
Alignment explanation
Indices: 4010667--4010722 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
4010657 TCCTTCTTTC
4010667 CTTCTTCCTTTTA-TTTATTTAT
1 CTTCTTCCTTTTATTTTATTT-T
* *
4010689 TTTCTTTCTTTTATTTTATTTT
1 CTTCTTCCTTTTATTTTATTTT
4010711 CTTCTTCCTTTT
1 CTTCTTCCTTTT
4010723 TTCCTTTTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 22 0.76
23 7 0.24
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (22 bp):
CTTCTTCCTTTTATTTTATTTT
Found at i:4027397 original size:25 final size:25
Alignment explanation
Indices: 4027369--4027478 Score: 100
Period size: 25 Copynumber: 4.5 Consensus size: 25
4027359 CAAACATGTA
*
4027369 AACGGGAAGCTCTTTCGAGCCATAT
1 AACGGGAAGCTCATTCGAGCCATAT
* *
4027394 AACGAGAAGCTCATGT-GAGCCATGT
1 AACGGGAAGCTCAT-TCGAGCCATAT
* *
4027419 AACGGGAAGCTCATCCAAGCCATA-
1 AACGGGAAGCTCATTCGAGCCATAT
* * **
4027443 ATCGGGAAGTTCAAGCGAGCCA-AT
1 AACGGGAAGCTCATTCGAGCCATAT
*
4027467 ATCGGGAAGCTC
1 AACGGGAAGCTC
4027479 CGGAGAGCAA
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
23 1 0.01
24 28 0.41
25 39 0.57
26 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (25 bp):
AACGGGAAGCTCATTCGAGCCATAT
Found at i:4027642 original size:24 final size:24
Alignment explanation
Indices: 4027615--4027685 Score: 61
Period size: 25 Copynumber: 2.9 Consensus size: 24
4027605 GGATGCTTCG
*
4027615 AAGAGCTATTAACGGGAAGCTCGC
1 AAGAGCTATTAACGGGAAGCTCAC
* * * *
4027639 AAGAACCATTTAACGGGACGCTCAT
1 AAGAGCTA-TTAACGGGAAGCTCAC
* * *
4027664 GAGAGCTAATAACGAGAAGCTC
1 AAGAGCTATTAACGGGAAGCTC
4027686 TTTCAAGTTG
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
24 17 0.49
25 18 0.51
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (24 bp):
AAGAGCTATTAACGGGAAGCTCAC
Found at i:4028025 original size:21 final size:21
Alignment explanation
Indices: 4028001--4028041 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4027991 GAATTTAACA
* *
4028001 TCAATTTAATACAATTCATAC
1 TCAATTCAATACAATACATAC
*
4028022 TCAATTCAATCCAATACATA
1 TCAATTCAATACAATACATA
4028042 TTTTGAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (21 bp):
TCAATTCAATACAATACATAC
Found at i:4043305 original size:57 final size:58
Alignment explanation
Indices: 4043159--4043305 Score: 158
Period size: 57 Copynumber: 2.6 Consensus size: 58
4043149 TGAACTTAAT
* * * *
4043159 AATTGTTCCCACA-TTGGTGCTTGAATTTTTTTTGTCTAAGTTAGTCCTTGAACTTGGC
1 AATTGTTACCACATTTGG-GCCTGAAATTTTTTTGTCCAAGTTAGTCCTTGAACTTGGC
** * * * *
4043217 AATTGTTTGCAAATTAGGGCCTGTAA-TTTTTTGTCCAAGTTAG-CACTTGCACTTGGC
1 AATTGTTACCACATTTGGGCCTGAAATTTTTTTGTCCAAGTTAGTC-CTTGAACTTGGC
4043274 AATTGTTACCACATTTGGGCCT-AAATTTTTTT
1 AATTGTTACCACATTTGGGCCTGAAATTTTTTT
4043306 TTGCCTAACT
Statistics
Matches: 72, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
56 3 0.04
57 51 0.71
58 15 0.21
59 3 0.04
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (58 bp):
AATTGTTACCACATTTGGGCCTGAAATTTTTTTGTCCAAGTTAGTCCTTGAACTTGGC
Found at i:4044542 original size:11 final size:12
Alignment explanation
Indices: 4044520--4044563 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
4044510 AACAAATCCG
4044520 CTCTCAAATTTC
1 CTCTCAAATTTC
4044532 CTCTC-AATTTC
1 CTCTCAAATTTC
4044543 CT-TCCAAATTT-
1 CTCT-CAAATTTC
4044554 CTCTCAAATT
1 CTCTCAAATT
4044564 CATATTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 17 0.59
12 11 0.38
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:4047385 original size:26 final size:26
Alignment explanation
Indices: 4047347--4047404 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
4047337 CATCCTCAAA
*
4047347 CTATAATCTAGATATTAAATTGGTCT
1 CTATAATCAAGATATTAAATTGGTCT
* *
4047373 TTATAATCAAGATTTTAAATTGGTCT
1 CTATAATCAAGATATTAAATTGGTCT
4047399 CTATAA
1 CTATAA
4047405 ATTTTGATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (26 bp):
CTATAATCAAGATATTAAATTGGTCT
Found at i:4047915 original size:34 final size:35
Alignment explanation
Indices: 4047849--4047915 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
4047839 CAAACACCAG
* *
4047849 AAAATATTTTTCAGTAAATCATTTTATAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
4047884 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
4047916 CATTTTCCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:4050706 original size:22 final size:22
Alignment explanation
Indices: 4050672--4050857 Score: 106
Period size: 22 Copynumber: 8.1 Consensus size: 22
4050662 TCCTTAACAT
4050672 AAAAACTCTAAACCCTAAACTTA
1 AAAAACTC-AAACCCTAAACTTA
* *
4050695 AAAAACTCAAACCATAAACCCTAA
1 AAAAACTCAAACCCTAAA--CTTA
* * *
4050719 ACTTTAAAACCCTAAAACCTAAACCT-
1 A----AAAACTC-AAACCCTAAACTTA
* * *
4050745 AAAAACCCTAACCCTTAACTTA
1 AAAAACTCAAACCCTAAACTTA
* * ** *
4050767 AAAACCACAAACTATAAACCTA
1 AAAAACTCAAACCCTAAACTTA
* * *
4050789 AAAACCTTAAACCCTTAACTTA
1 AAAAACTCAAACCCTAAACTTA
* *
4050811 AAAACCACAAACCCTAAACTTA
1 AAAAACTCAAACCCTAAACTTA
*
4050833 AAAATC-CTAAACCCTAAACTTA
1 AAAAACTC-AAACCCTAAACTTA
4050855 AAA
1 AAA
4050858 TCACTAAACC
Statistics
Matches: 126, Mismatches: 28, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
21 10 0.08
22 88 0.70
23 8 0.06
24 4 0.03
26 1 0.01
27 1 0.01
28 6 0.05
29 8 0.06
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.19
Consensus pattern (22 bp):
AAAAACTCAAACCCTAAACTTA
Found at i:4050741 original size:29 final size:28
Alignment explanation
Indices: 4050673--4050747 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 28
4050663 CCTTAACATA
4050673 AAAACTCTAAACCCTAAACTTAAAAAACT
1 AAAAC-CTAAACCCTAAACTTAAAAAACT
* **
4050702 CAAACCATAAACCCTAAACTTTAAAACCCT
1 AAAACC-TAAACCCTAAAC-TTAAAAAACT
4050732 AAAACCTAAA-CCTAAA
1 AAAACCTAAACCCTAAA
4050748 AACCCTAACC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.17
29 20 0.50
30 13 0.32
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (28 bp):
AAAACCTAAACCCTAAACTTAAAAAACT
Found at i:4050864 original size:22 final size:22
Alignment explanation
Indices: 4050709--4050872 Score: 149
Period size: 22 Copynumber: 7.5 Consensus size: 22
4050699 ACTCAAACCA
* *
4050709 TAAACCCTAAACTTTAAAACCC
1 TAAACCCTAAACTTAAAAACAC
* * *
4050731 TAAAACCTAAACCTAAAAACCC
1 TAAACCCTAAACTTAAAAACAC
*
4050753 T-AACCCTTAACTTAAAAACCAC
1 TAAACCCTAAACTTAAAAA-CAC
** *
4050775 -AAACTATAAACCTAAAAAC-C
1 TAAACCCTAAACTTAAAAACAC
*
4050795 TTAAACCCTTAACTTAAAAACCAC
1 -TAAACCCTAAACTTAAAAA-CAC
4050819 -AAACCCTAAACTTAAAAATC-C
1 TAAACCCTAAACTTAAAAA-CAC
*
4050840 TAAACCCTAAACTTAAAATCAC
1 TAAACCCTAAACTTAAAAACAC
*
4050862 TAAACCTTAAA
1 TAAACCCTAAA
4050873 ACCTTAACTT
Statistics
Matches: 115, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
20 1 0.01
21 17 0.15
22 95 0.83
23 1 0.01
24 1 0.01
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.21
Consensus pattern (22 bp):
TAAACCCTAAACTTAAAAACAC
Found at i:4050867 original size:44 final size:43
Alignment explanation
Indices: 4050703--4050857 Score: 188
Period size: 44 Copynumber: 3.5 Consensus size: 43
4050693 TAAAAAACTC
* *
4050703 AAACCATAAACCCTAAACTTTAAAACC-CTAAAACCTAAACCTAA
1 AAACC-TAAACCCTAAACTTAAAAACCAC-AAACCCTAAACCTAA
* **
4050747 AAACCCT-AACCCTTAACTTAAAAACCACAAACTATAAACCTAA
1 AAA-CCTAAACCCTAAACTTAAAAACCACAAACCCTAAACCTAA
* *
4050790 AAACCTTAAACCCTTAACTTAAAAACCACAAACCCTAAACTTAA
1 AAACC-TAAACCCTAAACTTAAAAACCACAAACCCTAAACCTAA
4050834 AAATCCTAAACCCTAAACTTAAAA
1 AAA-CCTAAACCCTAAACTTAAAA
4050858 TCACTAAACC
Statistics
Matches: 97, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
42 2 0.02
43 33 0.34
44 58 0.60
45 4 0.04
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (43 bp):
AAACCTAAACCCTAAACTTAAAAACCACAAACCCTAAACCTAA
Found at i:4054534 original size:251 final size:250
Alignment explanation
Indices: 4054080--4054644 Score: 882
Period size: 251 Copynumber: 2.3 Consensus size: 250
4054070 CCCAAACATG
*
4054080 CTACTGTAACAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAACATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAACATCCTGG
*
4054145 TAGAAGCGATTTTATACTATTTGCTTAGAAACATCAACTCGAAATTATTTCTTCCAGGACCAACT
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGACCAACT
* *
4054210 GTAGGAAAAGCGCGTCCACGAGGGCGCAATTTCAAATATTCTTCTCAAATAGCATCCTGCATGAA
131 GTAGCAAAAGCGCGTCCACGAGGGCGCAATTTCAAATATTCTTCGCAAATAGCATCCTGCATGAA
* *
4054275 GTGTTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGAC
196 GCG-TTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTCCAGGAC
*
4054331 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAACATCCTGG
* **
4054396 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTTGGACCAACT
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGACCAACT
* ** *
4054461 GTAGCAAAAGCGCGTCCA-GTAGGGCGCGATTTCACAA-ATTCTTCGCATGTAGCATCCTGCTTG
131 GTAGCAAAAGCGCGTCCACG-AGGGCGCAATTTCA-AATATTCTTCGCAAATAGCATCCTGCATG
*
4054524 AAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
194 AAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTCCAGGAC
* * * * * * * *
4054581 CTACTGTAGCAAAAGCGCGTACACGTGGGCGCGACTGCAAAAATCCTTCTGATAAATCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAACATCCTG
4054645 CTTTGATTTT
Statistics
Matches: 289, Mismatches: 23, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
250 107 0.37
251 180 0.62
252 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (250 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAACATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGACCAACT
GTAGCAAAAGCGCGTCCACGAGGGCGCAATTTCAAATATTCTTCGCAAATAGCATCCTGCATGAA
GCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTCCAGGAC
Found at i:4054645 original size:125 final size:125
Alignment explanation
Indices: 4054080--4054647 Score: 750
Period size: 125 Copynumber: 4.5 Consensus size: 125
4054070 CCCAAACATG
* * * *
4054080 CTACTGTAACAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAACATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
4054145 TAGAAGCGATTTTATACTATTTGCTTAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * *
4054205 CAACTGTAGGAAAAGCGCGTCCACGAGGGCGCAATTTCA-AATATTCTTCTCA-AATAGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAA-ATTCTTCTCATAA-AGCATCCT
* * * * *
4054268 GCATGAAGTGTTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTT-TTTCAGGAC
64 GCTTGAAGCG--ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* *
4054331 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* **
4054396 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTTGGAC
66 TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * **
4054456 CAACTGTAGCAAAAGCGCGTCCA-GTAGGGCGCGATTTCACAAATTCTTCGCATGTAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGT-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
*
4054520 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
65 CTTGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * * * * *
4054581 CTACTGTAGCAAAAGCGCGTACACGTGGGCGCGACTGCAAAAATCCTTCTGATAAATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
4054646 TT
66 TT
4054648 TGATTTTATC
Statistics
Matches: 382, Mismatches: 51, Indels: 20
0.84 0.11 0.04
Matches are distributed among these distances:
124 46 0.12
125 185 0.48
126 109 0.29
127 42 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Done.