Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 165 of 170
Found at i:48980261 original size:35 final size:33
Alignment explanation
Indices: 48980170--48980286 Score: 128
Period size: 35 Copynumber: 3.4 Consensus size: 33
48980160 CAAGAATTTT
* * *
48980170 TTTTTAAAACACGATAATTTTG-AAACACAATAT
1 TTTTTGAAACACGAAAATTTTGAAAACACAA-AA
48980203 TTTTTGAAGACACGAAAATTTTTGAAAACACGAAAA
1 TTTTTGAA-ACACGAAAA-TTTTGAAAACAC-AAAA
*
48980239 TTTTTGAAACACAAAAACTTTTGAAAACACAGAAA
1 TTTTTGAAACACGAAAA-TTTTGAAAACACA-AAA
*
48980274 TTTATGAAACACG
1 TTTTTGAAACACG
48980287 GGATATTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
33 7 0.10
34 9 0.12
35 39 0.54
36 15 0.21
37 2 0.03
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (33 bp):
TTTTTGAAACACGAAAATTTTGAAAACACAAAA
Found at i:48980295 original size:53 final size:53
Alignment explanation
Indices: 48980175--48980296 Score: 133
Period size: 53 Copynumber: 2.3 Consensus size: 53
48980165 ATTTTTTTTT
* * ** * *
48980175 AAAACAC-GATAATTTTGAAACACAATATTTTTTGAAGACACGAAAATTTTTG
1 AAAACACGGATATTTTTGAAACACAAAAACTTTTGAAAACACGAAAATTTATG
* *
48980227 AAAACACGAAAATTTTTGAAACACAAAAACTTTTGAAAACAC-AGAAATTTATG
1 AAAACACGGATATTTTTGAAACACAAAAACTTTTGAAAACACGA-AAATTTATG
48980280 -AAACACGGGATATTTTT
1 AAAACAC-GGATATTTTT
48980297 TTGAAAACAC
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
52 14 0.25
53 43 0.75
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (53 bp):
AAAACACGGATATTTTTGAAACACAAAAACTTTTGAAAACACGAAAATTTATG
Found at i:48980312 original size:18 final size:18
Alignment explanation
Indices: 48980169--48980333 Score: 123
Period size: 18 Copynumber: 9.4 Consensus size: 18
48980159 ACAAGAATTT
*
48980169 TTTTTTAAAACACG-ATA
1 TTTTTGAAAACACGAATA
*
48980186 ATTTTG-AAACAC-AATA
1 TTTTTGAAAACACGAATA
* *
48980202 TTTTTTGAAGACACGAAAA
1 -TTTTTGAAAACACGAATA
*
48980221 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAATA
* *
48980239 TTTTTG-AAACACAAAAA
1 TTTTTGAAAACACGAATA
*
48980256 CTTTTGAAAACACAGAA-A
1 TTTTTGAAAACAC-GAATA
* *
48980274 TTTATG-AAACACGGGATATT
1 TTTTTGAAAACAC--GA-ATA
48980294 TTTTTGAAAACACGAAT-
1 TTTTTGAAAACACGAATA
*
48980311 TTTTTG-AAACATGAAT-
1 TTTTTGAAAACACGAATA
48980327 TTTTTGA
1 TTTTTGA
48980334 TTTTTTTCTT
Statistics
Matches: 122, Mismatches: 15, Indels: 22
0.77 0.09 0.14
Matches are distributed among these distances:
16 24 0.20
17 36 0.30
18 43 0.35
19 8 0.07
20 5 0.04
21 6 0.05
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.35
Consensus pattern (18 bp):
TTTTTGAAAACACGAATA
Found at i:48980695 original size:26 final size:27
Alignment explanation
Indices: 48980666--48980717 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
48980656 TAAATTAAAA
48980666 ATATAAATA-CAAAAATATAAAAATGC
1 ATATAAATACCAAAAATATAAAAATGC
* * *
48980692 ATATAAGTACCAATAATATTAAAATG
1 ATATAAATACCAAAAATATAAAAATG
48980718 GAATAGCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.27
Consensus pattern (27 bp):
ATATAAATACCAAAAATATAAAAATGC
Found at i:48980834 original size:5 final size:5
Alignment explanation
Indices: 48980824--48980869 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
48980814 ATTGAACCCT
*
48980824 TTTTC TTTTC TTTT- TTTCC TTTT- TTTTC TTTT- TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
48980870 TTCCCTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
4 11 0.31
5 25 0.69
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:48980847 original size:9 final size:9
Alignment explanation
Indices: 48980824--48980869 Score: 65
Period size: 9 Copynumber: 4.9 Consensus size: 9
48980814 ATTGAACCCT
48980824 TTTTCTTTTC
1 TTTT-TTTTC
*
48980834 TTTTTTTCC
1 TTTTTTTTC
48980843 TTTTTTTTC
1 TTTTTTTTC
48980852 TTTTTTTTC
1 TTTTTTTTC
48980861 TTTTCTTTT
1 TTTT-TTTT
48980870 TTCCCTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 25 0.76
10 8 0.24
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:48980852 original size:23 final size:23
Alignment explanation
Indices: 48980823--48980880 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
48980813 AATTGAACCC
48980823 TTTTTCTTTTCTTTT-TTTCCTTT
1 TTTTTCTTTT-TTTTCTTTCCTTT
*
48980846 TTTTTCTTTTTTTTCTTTTCTTT
1 TTTTTCTTTTTTTTCTTTCCTTT
**
48980869 TTTCCCTTTTTT
1 TTTTTCTTTTTT
48980881 CTACTGGGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 4 0.13
23 27 0.87
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (23 bp):
TTTTTCTTTTTTTTCTTTCCTTT
Found at i:48981148 original size:10 final size:10
Alignment explanation
Indices: 48981133--48981174 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
48981123 TAATTATTTT
48981133 TTTCTT-TTCC
1 TTTCTTCTT-C
*
48981143 TTTCTTCTTT
1 TTTCTTCTTC
48981153 TTTCTTCTTC
1 TTTCTTCTTC
48981163 TTTCTTTCTTC
1 TTTC-TTCTTC
48981174 T
1 T
48981175 CTTTTTTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTCTTCTTC
Found at i:48981152 original size:13 final size:12
Alignment explanation
Indices: 48981134--48981183 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 12
48981124 AATTATTTTT
48981134 TTCTTTTCCTTTC
1 TTCTTTT-CTTTC
*
48981147 TTCTTTTTTCTTC
1 TTCTTTTCT-TTC
48981160 TTC-TTTCTTTC
1 TTCTTTTCTTTC
48981171 TTCTCTTT-TTTC
1 TTCT-TTTCTTTC
48981183 T
1 T
48981184 CTTCTCCTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 16 0.50
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTCTTTTCTTTC
Found at i:48981155 original size:20 final size:20
Alignment explanation
Indices: 48981130--48981168 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
48981120 TGTTAATTAT
48981130 TTTTTTCTT-TTCCTTTCTTC
1 TTTTTTCTTCTT-CTTTCTTC
48981150 TTTTTTCTTCTTCTTTCTT
1 TTTTTTCTTCTTCTTTCTT
48981169 TCTTCTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTCTTCTTCTTTCTTC
Found at i:48981170 original size:14 final size:13
Alignment explanation
Indices: 48981144--48981188 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
48981134 TTCTTTTCCT
48981144 TTCTTCTTTTTTC
1 TTCTTCTTTTTTC
48981157 TTCTTCTTTCTTTC
1 TTCTTCTTT-TTTC
48981171 TTC-TCTTTTTTC
1 TTCTTCTTTTTTC
48981183 -TCTTCT
1 TTCTTCT
48981189 CCTTCGGCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.07
12 7 0.23
13 14 0.47
14 7 0.23
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
TTCTTCTTTTTTC
Found at i:48981265 original size:17 final size:17
Alignment explanation
Indices: 48981243--48981281 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
48981233 TGGCTGCCGG
48981243 TTTCTCCCCTTCCCTCC
1 TTTCTCCCCTTCCCTCC
* * *
48981260 TTTCTCTCCTTTCCTTC
1 TTTCTCCCCTTCCCTCC
48981277 TTTCT
1 TTTCT
48981282 TCTTCTTCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTCTCCCCTTCCCTCC
Found at i:48981330 original size:28 final size:27
Alignment explanation
Indices: 48981295--48981367 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 27
48981285 TCTTCCCCAC
48981295 TTTT-TTGTCGCTTTTTTTT-CTATTCT
1 TTTTCTTGTCGCTTTTTTTTCCT-TTCT
* *
48981321 TTCTTCTTGTTGTTTTTTTTTCGCTTTCT
1 TT-TTCTTGTCGCTTTTTTTTC-CTTTCT
*
48981350 TTTTCTT-TCTCTTTTTTT
1 TTTTCTTGTCGCTTTTTTT
48981368 GCTTTGGCTC
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 2 0.05
27 10 0.26
28 18 0.47
29 6 0.16
30 2 0.05
ACGTcount: A:0.01, C:0.16, G:0.07, T:0.75
Consensus pattern (27 bp):
TTTTCTTGTCGCTTTTTTTTCCTTTCT
Found at i:48982108 original size:77 final size:77
Alignment explanation
Indices: 48981922--48982763 Score: 985
Period size: 77 Copynumber: 10.9 Consensus size: 77
48981912 AAAAATCGAG
* * * * *
48981922 AATAGCTCGGCGTGCGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
*
48981987 AGAAACTT--AA
66 AGAAATTTAAAA
* *
48981997 AATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AGTTTTTGAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAA
48982061 AAGAAATTTAAAA
65 AAGAAATTTAAAA
* * * *
48982074 AACACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
*
48982139 AGAAGTTTAAAAGA
66 AGAAATTT-AAA-A
* * * *
48982153 AATACATCGGC--ATGACCCGAGGCTCAACTCACCTCTTGCAATATGACTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-
48982216 AA-AAATTTAAAAGA
65 AAGAAATTT-AAA-A
* * * * * * **
48982230 AATACCTCAGCATGTAACCCAATGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
*
48982295 AGAAA-TTGAAA
66 AGAAATTTAAAA
*
48982306 AATACCTCAGC--GTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAA
*
48982368 ATAGAAA-TTGAAA
65 A-AGAAATTTAAAA
*
48982381 AATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-
48982446 AA-AAATTTAAAAGA
65 AAGAAATTT-AAA-A
** * * *
48982460 AATACAACGGCATGTG-TCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG--AAA
48982524 AAATAGAAATTT-AAA
63 AAA-AGAAATTTAAAA
* * * * *
48982539 AATACCTCAGTGTGTGACCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
48982604 AGAAATTTAAAA
66 AGAAATTTAAAA
* *
48982616 AATACCTCAGCGTGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG--AA
48982680 AAAATAGAAATTTAAAAA
62 AAAA-AGAAATTT-AAAA
*** *
48982698 AATACCTCGATATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
48982763 A
66 A
48982764 ACAGAAGTTG
Statistics
Matches: 665, Mismatches: 69, Indels: 63
0.83 0.09 0.08
Matches are distributed among these distances:
73 32 0.05
74 14 0.02
75 87 0.13
76 56 0.08
77 176 0.26
78 85 0.13
79 99 0.15
80 40 0.06
81 20 0.03
82 22 0.03
83 34 0.05
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (77 bp):
AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
AGAAATTTAAAA
Found at i:48982298 original size:156 final size:155
Alignment explanation
Indices: 48981937--48982761 Score: 1023
Period size: 156 Copynumber: 5.3 Consensus size: 155
48981927 CTCGGCGTGC
* * *
48981937 GACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAGAAACTT---AAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAA
* * * *
48981999 TACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AGTTTTTGAAAAAA-
66 TACATCGGCAT--GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAT
* *
48982062 AGAAATTTAAAAAACACCTCGGTGTGT
129 AGAAATTTAAAAAATACCTCAGTGTGT
* *
48982089 GACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAGTTTAAAAGAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA-AA
* *
48982154 ATACATCGGCATGACCCGAGGCTCAACTCACCTCTTGCAATATGACTTGA-TTTTTGAAAAACA-
65 ATACATCGGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA-AT
**
48982217 A-AAATTTAAAAGAAATACCTCAGCATGT
129 AGAAATTT-AAA-AAATACCTCAGTGTGT
* * * * * *
48982245 AACCCAATGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCAGAAA-TT-GAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAA
* * *
48982308 TACCTCAGCGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAATAG
66 TACATCGGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAATAG
* * *
48982372 AAA-TTGAAAAATACCTCGGCGTGT
131 AAATTTAAAAAATACCTCAGTGTGT
* *
48982396 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAGAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA-AA
* ** *
48982461 ATACAACGGCATGTGTCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAA
65 ATACATCGGCATG-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG--AAAAA
48982526 ATAGAAATTT-AAAAATACCTCAGTGTGT
127 ATAGAAATTTAAAAAATACCTCAGTGTGT
* *
48982554 GACCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT-AAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAA
* * * **
48982618 TACCTCAGCGTGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAA
66 TACATCGGCATG-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG--AAAAA
*
48982683 ATAGAAATTTAAAAAAATACCTC-GATATGT
127 ATAGAAATTT-AAAAAATACCTCAG-TGTGT
*
48982713 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
48982762 AAACAGAAGT
Statistics
Matches: 597, Mismatches: 53, Indels: 39
0.87 0.08 0.06
Matches are distributed among these distances:
151 62 0.10
152 91 0.15
153 29 0.05
154 67 0.11
155 9 0.02
156 162 0.27
157 27 0.05
158 85 0.14
159 65 0.11
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (155 bp):
GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAA
TACATCGGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAATAG
AAATTTAAAAAATACCTCAGTGTGT
Found at i:48982349 original size:229 final size:226
Alignment explanation
Indices: 48981922--48982763 Score: 1007
Period size: 229 Copynumber: 3.6 Consensus size: 226
48981912 AAAAATCGAG
* * *
48981922 AATAGCTCGGCGTGCGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
1 AATACCTCGGCGT--GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
* * * *
48981987 AGAAACTT---AAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-
64 AAAAATTTAAAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
48982048 AGTTTTTGAAAAAAAGAAATTTAAAAAACACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTC
129 AGTTTTTGAAAAAAAGAAA-TTAAAAAATACCTC--AGTGTGA-CCGAGGCTCAACTCACCTCTC
*
48982113 ACAATATGAGTTGATTTTTGAAAAACAGAAGTTTAAAAGA
190 GCAATATGAGTTGATTTTTGAAAAACAGAA-TTT-AAA-A
* * * *
48982153 AATACATCGGCATGACCCGAGGCTCAACTCACCTCTTGCAATATGACTTGATTTTTGAAAAACAA
1 AATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAA
* * * *
48982218 AAATTTAAAAGAAATACCTCAGCATGTAACCCAATGCTCAACTCACCTCTCACAATATGAGTTGA
66 AAATTTAAAA-AAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
** * *
48982283 -TTTTTGAAAAGCAGAAATTGAAAAATACCTCAGCGTGACCGAGGCTCAACTCACCTCTCGCAAT
130 GTTTTTGAAAAAAAGAAATTAAAAAATACCTCAGTGTGACCGAGGCTCAACTCACCTCTCGCAAT
* * *
48982347 ATGAGTTGATTTTTTGAAAAAATAGAAATTGAAA
195 ATGAGTTGA-TTTTTG-AAAAACAGAATTTAAAA
*
48982381 AATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AATACCTCGGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
** * * *
48982446 AAAAATTTAAAAGAAATACAACGGCATGTG-TCCGAGACTCAACTCACCTCTCGCAATATGAGTT
64 AAAAATTTAAAA-AAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
48982510 GATTTTTTGAAAAAAAATAGAAATTTAAAAATACCTCAGTGTGTGACCTGAGGCTCAAATCACCT
128 GAGTTTTTG--AAAAAA-AGAAATTAAAAAATACCTCA--GTGTGACC-GAGGCTCAACTCACCT
48982575 CTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
187 CTCGCAATATGAGTTGATTTTTGAAAAACAG-AATTTAAAA
* **
48982616 AATACCTCAGCGTGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
1 AATACCTCGGCGTG-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAA
* * *
48982681 AAATAGAAATTTAAAAAAATACCTC-GATATGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
62 ACA-A-AAATTTAAAAAAATACCTCAG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
48982745 AGTTGA-TTTTTGAAAAAAA
124 AGTTGAGTTTTTGAAAAAAA
48982764 ACAGAAGTTG
Statistics
Matches: 528, Mismatches: 58, Indels: 46
0.84 0.09 0.07
Matches are distributed among these distances:
228 11 0.02
229 119 0.23
230 93 0.18
231 19 0.04
232 17 0.03
233 83 0.16
234 42 0.08
235 31 0.06
236 44 0.08
237 7 0.01
238 19 0.04
239 43 0.08
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (226 bp):
AATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAA
AAATTTAAAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
TTTTTGAAAAAAAGAAATTAAAAAATACCTCAGTGTGACCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAACAGAATTTAAAA
Found at i:48985311 original size:44 final size:44
Alignment explanation
Indices: 48985248--48985336 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
48985238 GCGTTCGATG
* *
48985248 CACCATCAAAACTTATCTTCCATGATTGATCTTTTGATGATTCA
1 CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
48985292 CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
1 CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
48985336 C
1 C
48985337 CTTCGAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (44 bp):
CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
Found at i:48987251 original size:36 final size:36
Alignment explanation
Indices: 48987204--48987276 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
48987194 AAAATGCATC
48987204 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
1 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
48987240 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
1 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
48987276 T
1 T
48987277 AAGCTCTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.32
Consensus pattern (36 bp):
TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
Found at i:48991048 original size:17 final size:16
Alignment explanation
Indices: 48991028--48991226 Score: 123
Period size: 17 Copynumber: 11.4 Consensus size: 16
48991018 AACACGATAA
48991028 TTTTGAAACACAATATT
1 TTTTGAAACACAA-ATT
48991045 TTTTGAAGACACGATAA-T
1 TTTTGAA-ACAC-A-AATT
*
48991063 TTTTGAAACAAAGGAATT
1 TTTTGAAACACA--AATT
**
48991081 TTTTGAAACACGAAAAC
1 TTTTGAAACAC-AAATT
*
48991098 TTTTGAAACACGAAAAT
1 TTTTGAAACAC-AAATT
*
48991115 TTTTGAAAACACGAAAAT
1 TTTTG-AAACAC-AAATT
*
48991133 TTTTGAAACACAAGAAT
1 TTTTGAAACACAA-ATT
48991150 TTTTGAAAACACGGAAA-T
1 TTTTG-AAACAC--AAATT
* *
48991168 TTATGAAACACGGGATATTT
1 TTTTGAAACAC---A-AATT
*
48991188 TTTTGAAAACACGAATT
1 TTTTG-AAACACAAATT
*
48991205 TTTTGAAACACGAATT
1 TTTTGAAACACAAATT
48991221 TTTTGA
1 TTTTGA
48991227 TTTTTTTTCT
Statistics
Matches: 156, Mismatches: 11, Indels: 31
0.79 0.06 0.16
Matches are distributed among these distances:
16 20 0.13
17 63 0.40
18 54 0.35
19 5 0.03
20 8 0.05
21 6 0.04
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (16 bp):
TTTTGAAACACAAATT
Found at i:48991067 original size:35 final size:34
Alignment explanation
Indices: 48990996--48991226 Score: 211
Period size: 35 Copynumber: 6.6 Consensus size: 34
48990986 TGTGATCCAA
* * *
48990996 TTGAAATACGATATTTTTTTAAAACACGATAA-TT
1 TTGAAACACAATATTTTTTGAAAACACGA-AATTT
*
48991030 TTGAAACACAATATTTTTTGAAGACACGATAATTT
1 TTGAAACACAATATTTTTTGAAAACACGA-AATTT
* *
48991065 TTGAAACA-AAGGAATTTTTTG-AAACACGAAAACTT
1 TTGAAACACAA--TATTTTTTGAAAACACG-AAATTT
*
48991100 TTGAAACACGAA-AATTTTTGAAAACACGAAAATTT
1 TTGAAACAC-AATATTTTTTGAAAACACG-AAATTT
* *
48991135 TTGAAACACAAGAATTTTTGAAAACACGGAAATTT
1 TTGAAACACAATATTTTTTGAAAACAC-GAAATTT
* * *
48991170 ATGAAACACGGGATATTTTTTTGAAAACACGAATTTT
1 TTGAAACAC--AATA-TTTTTTGAAAACACGAAATTT
*
48991207 TTGAAACACGA-ATTTTTTGA
1 TTGAAACACAATATTTTTTGA
48991227 TTTTTTTTCT
Statistics
Matches: 170, Mismatches: 15, Indels: 25
0.81 0.07 0.12
Matches are distributed among these distances:
33 8 0.05
34 40 0.24
35 81 0.48
36 10 0.06
37 18 0.11
38 13 0.08
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (34 bp):
TTGAAACACAATATTTTTTGAAAACACGAAATTT
Found at i:48992040 original size:7 final size:7
Alignment explanation
Indices: 48992030--48992072 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
48992020 TTTTCTTTTC
48992030 CTTTCTT
1 CTTTCTT
48992037 CTTTCTT
1 CTTTCTT
*
48992044 TTTTCTT
1 CTTTCTT
48992051 CTTTCTTT
1 CTTTC-TT
48992059 CTTCTCTT
1 CTT-TCTT
*
48992067 TTTTCT
1 CTTTCT
48992073 CTTCTCCTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
7 20 0.65
8 9 0.29
9 2 0.06
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (7 bp):
CTTTCTT
Found at i:48992050 original size:14 final size:14
Alignment explanation
Indices: 48992031--48992067 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
48992021 TTTCTTTTCC
48992031 TTTCTTCTTTCTTT
1 TTTCTTCTTTCTTT
48992045 TTTCTTCTTTCTTT
1 TTTCTTCTTTCTTT
*
48992059 CTTC-TCTTT
1 TTTCTTCTTT
48992068 TTTCTCTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTCTTCTTTCTTT
Found at i:48992058 original size:25 final size:22
Alignment explanation
Indices: 48992018--48992081 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 22
48992008 GTTAATTAAT
48992018 TTTTTTCTTTTCCTTTCTTCTTTC
1 TTTTTTCTTTTCCTTTCTTC--TC
*
48992042 TTTTTTCTTCTTTCTTTCTTCTC
1 TTTTTTCTT-TTCCTTTCTTCTC
48992065 TTTTTTCTCTTCTCCTT
1 TTTTTTCT-TT-TCCTT
48992082 CAGCCTTAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 11 0.31
24 14 0.40
25 10 0.29
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTTTCTTTTCCTTTCTTCTC
Found at i:48992236 original size:13 final size:13
Alignment explanation
Indices: 48992218--48992259 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
48992208 TTCTTTCTTC
48992218 TTCTTGTTTTTTT
1 TTCTTGTTTTTTT
48992231 TTCTTGCTTTTTCTT
1 TTCTTG-TTTTT-TT
48992246 TCTCTT-TTTTTTT
1 T-TCTTGTTTTTTT
48992259 T
1 T
48992260 GCTTTGGCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 9 0.35
14 10 0.38
15 3 0.12
16 4 0.15
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (13 bp):
TTCTTGTTTTTTT
Found at i:48992244 original size:26 final size:29
Alignment explanation
Indices: 48992194--48992259 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 29
48992184 TCTTTTGTTG
* *
48992194 CTTTCTTTTTTCTATTCTTTCTTC-TTCT
1 CTTTTTTTTTTCTATGCTTTCTTCTTTCT
48992222 -TGTTTTTTTTTCT-TGCTTT-TTCTTTCT
1 CT-TTTTTTTTTCTATGCTTTCTTCTTTCT
48992249 CTTTTTTTTTT
1 CTTTTTTTTTT
48992260 GCTTTGGCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
26 3 0.09
27 19 0.58
28 11 0.33
ACGTcount: A:0.02, C:0.18, G:0.03, T:0.77
Consensus pattern (29 bp):
CTTTTTTTTTTCTATGCTTTCTTCTTTCT
Found at i:48992613 original size:30 final size:30
Alignment explanation
Indices: 48992572--48992659 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
48992562 TAAACGCAGT
**
48992572 AAAAGTTTTGGGGTCGAAACATAATTTTGAG
1 AAAA-TTTTGGGGTCGAAATGTAATTTTGAG
*
48992603 AAAATTTTGGGGTCAAAATGTAATTTTGAG
1 AAAATTTTGGGGTCGAAATGTAATTTTGAG
* * *
48992633 AAAGTTTAGGAGTCGAAATGTAATTTT
1 AAAATTTTGGGGTCGAAATGTAATTTT
48992660 TTTAAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (30 bp):
AAAATTTTGGGGTCGAAATGTAATTTTGAG
Found at i:49004536 original size:27 final size:27
Alignment explanation
Indices: 49004495--49004624 Score: 147
Period size: 27 Copynumber: 4.8 Consensus size: 27
49004485 TAGTATTGGC
* *
49004495 GCCTATTTGGAAGGCTG-CAATGGTGGT
1 GCCTATTTGGGAGGC-GCCAATGGTAGT
49004522 GCCTATTTGGGAGGCGCCAATGGTAGT
1 GCCTATTTGGGAGGCGCCAATGGTAGT
*
49004549 GCCTATTTGGGAAGCGCCAATGGTAGT
1 GCCTATTTGGGAGGCGCCAATGGTAGT
* * * *
49004576 GCCTATGTAGCAGGCGCCAATGGTGGT
1 GCCTATTTGGGAGGCGCCAATGGTAGT
* *
49004603 GCC-ATATTAGAAGGCGCCAATG
1 GCCTAT-TTGGGAGGCGCCAATG
49004625 CTGTGATTTT
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
26 3 0.03
27 88 0.97
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.25
Consensus pattern (27 bp):
GCCTATTTGGGAGGCGCCAATGGTAGT
Found at i:49004728 original size:18 final size:20
Alignment explanation
Indices: 49004686--49004732 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
49004676 AAAACGGAAG
49004686 AAAGAAGAAGGAAGGAAGCA
1 AAAGAAGAAGGAAGGAAGCA
* *
49004706 GAAGAA-AA-GAAGGAAGGA
1 AAAGAAGAAGGAAGGAAGCA
49004724 AAAGAAGAA
1 AAAGAAGAA
49004733 AAAAAGTAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 14 0.61
19 4 0.17
20 5 0.22
ACGTcount: A:0.64, C:0.02, G:0.34, T:0.00
Consensus pattern (20 bp):
AAAGAAGAAGGAAGGAAGCA
Found at i:49004735 original size:22 final size:23
Alignment explanation
Indices: 49004682--49004735 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
49004672 TACAAAAACG
*
49004682 GAAGAAAGAAGAAGGAAGGAAGCA
1 GAAGAAA-AAGAAGGAAGGAAGAA
49004706 GAAG-AAAAGAAGGAAGGAA-AA
1 GAAGAAAAAGAAGGAAGGAAGAA
49004727 GAAGAAAAA
1 GAAGAAAAA
49004736 AAGTAGGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 17 0.61
23 2 0.07
24 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.33, T:0.00
Consensus pattern (23 bp):
GAAGAAAAAGAAGGAAGGAAGAA
Found at i:49008092 original size:6 final size:6
Alignment explanation
Indices: 49008058--49008113 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
49008048 AGAATATGGT
* * * *
49008058 TCTGGG TCTGGC TCCGGC TCTGGC GCTAGC TCTAGG- TCTGGC TCTGGC
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCT-GGC TCTGGC TCTGGC
49008106 TCTGGC TC
1 TCTGGC TC
49008114 CGGTGCATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
5 2 0.05
6 38 0.93
7 1 0.02
ACGTcount: A:0.04, C:0.32, G:0.34, T:0.30
Consensus pattern (6 bp):
TCTGGC
Found at i:49009860 original size:38 final size:38
Alignment explanation
Indices: 49009817--49009898 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
49009807 AAAAAGTCAG
49009817 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
* *
49009855 TTATAATTAAACTTTTAATGAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
49009893 TTATAA
1 TTATAA
49009899 ACTTTATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
Found at i:49010078 original size:27 final size:27
Alignment explanation
Indices: 49010047--49010384 Score: 192
Period size: 27 Copynumber: 14.1 Consensus size: 27
49010037 TTATAAAATA
49010047 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
49010074 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTACAAT
* *
49010096 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
*
49010123 ATTACAATATTCATACAACATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
*
49010150 ATT-C-ATA---A-A-AAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
* *
49010170 ATTCATGCAA-AAT--TACAATATTACAAT
1 ATT-A--CAATATTCATACAAAATTACAAT
* *
49010197 ATT-C-ATA--CA-AAAAAATTGC-A-
1 ATTACAATATTCATACAAAATTACAAT
*
49010217 A-TA-----TTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
49010238 ATTACAATATTCATACAAAA--A-AAT
1 ATTACAATATTCATACAAAATTACAAT
*
49010262 A-T--AATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTACAAT
*
49010286 ATTTCAATATTCATAC-AAA--A-AAT
1 ATTACAATATTCATACAAAATTACAAT
* * *
49010309 -TGA-AATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAATTACAAT
49010334 ATTACAATATTCATAC--AA--A-AAT
1 ATTACAATATTCATACAAAATTACAAT
*
49010356 -TTATAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
49010382 ATT
1 ATT
49010385 CATACAAAAA
Statistics
Matches: 244, Mismatches: 20, Indels: 94
0.68 0.06 0.26
Matches are distributed among these distances:
18 2 0.01
19 8 0.03
20 14 0.06
21 43 0.18
22 33 0.14
23 14 0.06
24 12 0.05
25 13 0.05
26 15 0.06
27 90 0.37
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.33
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTACAAT
Found at i:49010109 original size:49 final size:49
Alignment explanation
Indices: 49010041--49010393 Score: 184
Period size: 49 Copynumber: 7.5 Consensus size: 49
49010031 AATTAATTAT
*
49010041 AAAATAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
49010090 AAAAAAATTGCAATATTCATACAAAATTATAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* * *
49010139 ---AACATTACAATATTCAT---AAA--A-AA-ATTATAATATTCATGC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
*
49010178 AAAATTACAATATTACAATATTCATAC-AAA--A-AA-ATTGCAATATTCATAC
1 -AAA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
49010227 AAAATTATAATATTACAATATTCATACAAAA--A-AATA-T--AATATTCATAC
1 -AAA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
49010275 AAAATTACAAAATTTCAATATTCATAC-AAA--A-AAT-TGA-AATATTCATAC
1 --AA--A-AAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
*
49010323 AAAACTATAATATTACAATATTCATAC--AA--A-AAT-TTATAATATTCATAC
1 -AAA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
49010371 ---AAAATTACAATATTCATACAAAA
1 AAAAAAATTACAATATTCATACAAAA
49010394 AATTACTAAT
Statistics
Matches: 263, Mismatches: 18, Indels: 53
0.79 0.05 0.16
Matches are distributed among these distances:
39 14 0.05
40 18 0.07
41 3 0.01
42 3 0.01
43 3 0.01
45 2 0.01
46 17 0.06
47 34 0.13
48 63 0.24
49 96 0.37
50 8 0.03
51 2 0.01
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (49 bp):
AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
Found at i:49010171 original size:115 final size:115
Alignment explanation
Indices: 49010039--49010255 Score: 407
Period size: 115 Copynumber: 1.9 Consensus size: 115
49010029 CAAATTAATT
*
49010039 ATAAAATAATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAAT
1 ATAAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAAT
49010104 ATTCATACAAAATTATAATATTACAATATTCATACAACATTACAATATTC
66 ATTCATACAAAATTATAATATTACAATATTCATACAACATTACAATATTC
* *
49010154 ATAAAAAAATTATAATATTCATGCAAAATTACAATATTACAATATTCATACAAAAAAATTGCAAT
1 ATAAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAAT
49010219 ATTCATACAAAATTATAATATTACAATATTCATACAA
66 ATTCATACAAAATTATAATATTACAATATTCATACAA
49010256 AAAAATATAA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 99 1.00
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.33
Consensus pattern (115 bp):
ATAAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAAT
ATTCATACAAAATTATAATATTACAATATTCATACAACATTACAATATTC
Found at i:49010212 original size:96 final size:95
Alignment explanation
Indices: 49010042--49010384 Score: 345
Period size: 96 Copynumber: 3.6 Consensus size: 95
49010032 ATTAATTATA
* *
49010042 AAATAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC-AAA--A-AA-ATTGCA
1 AAAT-ATTACAATATTCATAC--AA--A-AA-ATTATAATATTCATACAAAATTACAATATTACA
49010102 ATATTCATAC--AAAATTATAATA-T-TACAATATTCAT
59 ATATTCATACAAAAAATTA-AATATTATACAA-ATTCAT
* *
49010137 ACAACATTACAATATTCATA-AAAAAATTATAATATTCATGCAAAATTACAATATTACAATATTC
1 A-AATATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAATATTACAATATTC
*
49010201 ATACAAAAAAATTGCAATATTCATACAAAATT-AT
65 ATAC-AAAAAATT-AAATATT-ATAC-AAATTCAT
* * *
49010235 -AATATTACAATATTCATACAAAAAAATATAATATTCATACAAAATTACAAAATTTCAATATTCA
1 AAATATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAATATTACAATATTCA
*
49010299 TACAAAAAATTGAAATATTCATACAAA-AC-T
66 TACAAAAAATT-AAATATT-ATACAAATTCAT
*
49010329 ATAATATTACAATATTCATACAAAAATTTATAATATTCATACAAAATTACAATATT
1 A-AATATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAATATT
49010385 CATACAAAAA
Statistics
Matches: 215, Mismatches: 15, Indels: 35
0.81 0.06 0.13
Matches are distributed among these distances:
88 14 0.07
89 5 0.02
90 1 0.00
91 1 0.00
92 4 0.02
93 15 0.07
94 1 0.00
95 19 0.09
96 100 0.47
97 45 0.21
98 2 0.01
99 6 0.03
100 2 0.01
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.33
Consensus pattern (95 bp):
AAATATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAATATTACAATATTCA
TACAAAAAATTAAATATTATACAAATTCAT
Found at i:49010507 original size:22 final size:21
Alignment explanation
Indices: 49010291--49010518 Score: 116
Period size: 21 Copynumber: 10.7 Consensus size: 21
49010281 ACAAAATTTC
*
49010291 AATATTCATACAAAAAATTGA
1 AATATTCATACAAAAAATTAA
* *
49010312 AATATTCATAC--AAAACTAT
1 AATATTCATACAAAAAATTAA
*
49010331 AATATTACAATATTCATACAAAAATTTAT
1 AATATT-C-ATA--C--A-AAAAA-TTAA
*
49010360 AATATTCATAC--AAAATTAC
1 AATATTCATACAAAAAATTAA
*
49010379 AATATTCATACAAAAAATTAC
1 AATATTCATACAAAAAATTAA
* * * * *
49010400 TA-ATCCAAAACTATAAA-TACA
1 AATATTC-ATACAAAAAATTA-A
* * *
49010421 AAT-TTAATTATAAAATAATTAC
1 AATATTCA-TACAAAA-AATTAA
* *
49010443 AATATTCATAC--AACATTAC
1 AATATTCATACAAAAAATTAA
*
49010462 AATATTCATA-AAAAAATTAT
1 AATATTCATACAAAAAATTAA
49010482 AATATTCATACAAAAAATTTAA
1 AATATTCATACAAAAAA-TTAA
49010504 AATATTCATACAAAA
1 AATATTCATACAAAA
49010519 TTCTAATCTA
Statistics
Matches: 159, Mismatches: 25, Indels: 45
0.69 0.11 0.20
Matches are distributed among these distances:
19 40 0.25
20 29 0.18
21 41 0.26
22 25 0.16
23 6 0.04
25 1 0.01
27 3 0.02
28 5 0.03
29 9 0.06
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (21 bp):
AATATTCATACAAAAAATTAA
Found at i:49010519 original size:83 final size:84
Alignment explanation
Indices: 49010280--49010519 Score: 235
Period size: 83 Copynumber: 2.8 Consensus size: 84
49010270 CATACAAAAT
* *
49010280 TACAAAATTTCAATATTCATACAAAAAATTGA-AATATTCATACAAAACTATAATATTACAATAT
1 TACAAAATTACAATATTCATACAAAAAATT-ATAATATTCATAC-AAA--A-AAT-TTAAAATAT
* *
49010344 TCATACAAAA-ATTTATAATATTCA
60 TCATACAAAATAATTACAATATTCA
* * * * *
49010368 TACAAAATTACAATATTCATACAAAAAATTACT-A-ATCCAAAACTATAAA--TACAAAT-TTAA
1 TACAAAATTACAATATTCATACAAAAAATTA-TAATATTC-ATACAAAAAATTTA-AAATATTCA
*
49010428 TTATAAAATAATTACAATATTCA
63 -TACAAAATAATTACAATATTCA
*
49010451 TACAACATTACAATATTCATA-AAAAAATTATAATATTCATACAAAAAATTTAAAATATTCATAC
1 TACAAAATTACAATATTCATACAAAAAATTATAATATTCATACAAAAAATTTAAAATATTCATAC
49010515 AAAAT
66 AAAAT
49010520 TCTAATCTAA
Statistics
Matches: 124, Mismatches: 17, Indels: 27
0.74 0.10 0.16
Matches are distributed among these distances:
81 6 0.05
82 26 0.21
83 46 0.37
84 7 0.06
85 1 0.01
87 5 0.04
88 33 0.27
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (84 bp):
TACAAAATTACAATATTCATACAAAAAATTATAATATTCATACAAAAAATTTAAAATATTCATAC
AAAATAATTACAATATTCA
Found at i:49010560 original size:7 final size:7
Alignment explanation
Indices: 49010550--49010574 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
49010540 CTAAATATAG
49010550 ATAATTA
1 ATAATTA
49010557 ATAATTA
1 ATAATTA
49010564 ATAATTA
1 ATAATTA
49010571 ATAA
1 ATAA
49010575 AAAAATTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
ATAATTA
Found at i:49010560 original size:122 final size:122
Alignment explanation
Indices: 49010334--49010563 Score: 308
Period size: 122 Copynumber: 1.9 Consensus size: 122
49010324 AAACTATAAT
* *
49010334 ATTACAATATTCATACAAAAATTTATAATATTCATACAAAATTACAATATTCATACAAAAAATTA
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTAAAATATTCATAC-AAAAATTA
* * *
49010399 CTAATCCAAAACTATAAATACAAATTTAATTATAAAATAATTACAATATTCATACAAC
65 CTAATCCAAAACTATAAACACAAATATAATAATAAAATAATTACAATATTCATACAAC
49010457 ATTACAATATTCATA-AAAAAATTATAATATTCATACAAAAAATTTAAAATATTCATAC-AAAAT
1 ATTACAATATTCATACAAAAAATTATAATATTCATAC--AAAA-TTAAAATATTCATACAAAAAT
* *
49010520 T-CTAAT-CTAAACTATAAACACTAAATATAGATAAT-TAATAATTA
63 TACTAATCCAAAACTATAAACAC-AAATATA-ATAATAAAATAATTA
49010564 ATAATTAATA
Statistics
Matches: 95, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
121 13 0.14
122 39 0.41
123 25 0.26
124 4 0.04
125 14 0.15
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.33
Consensus pattern (122 bp):
ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTAAAATATTCATACAAAAATTAC
TAATCCAAAACTATAAACACAAATATAATAATAAAATAATTACAATATTCATACAAC
Found at i:49014612 original size:13 final size:13
Alignment explanation
Indices: 49014565--49014625 Score: 70
Period size: 13 Copynumber: 4.7 Consensus size: 13
49014555 CTTAAATTTG
49014565 TCAAAAGCA-TTT
1 TCAAAAGCACTTT
49014577 CTCAAAAGCACTTT
1 -TCAAAAGCACTTT
* *
49014591 TCCACAGCACTTT
1 TCAAAAGCACTTT
*
49014604 TTAAAAGCACTTT
1 TCAAAAGCACTTT
*
49014617 TTAAAAGCA
1 TCAAAAGCA
49014626 TTGCCAAACT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
13 39 0.93
14 3 0.07
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
TCAAAAGCACTTT
Found at i:49023216 original size:20 final size:20
Alignment explanation
Indices: 49023169--49023206 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
49023159 TGTATTTAGG
*
49023169 ATAAT-AAAATTTTATTCCT
1 ATAATAAAAAATTTATTCCT
49023188 ATAATAAAAAATTTATTCC
1 ATAATAAAAAATTTATTCC
49023207 ATTACTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAATAAAAAATTTATTCCT
Found at i:49030991 original size:22 final size:22
Alignment explanation
Indices: 49030964--49031012 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
49030954 TTTTATAATT
49030964 TATAACATATAAAAATAAAATC
1 TATAACATATAAAAATAAAATC
* * * *
49030986 TATAACTTTTAAAAATAATATT
1 TATAACATATAAAAATAAAATC
49031008 TATAA
1 TATAA
49031013 TGTATGACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
TATAACATATAAAAATAAAATC
Found at i:49036865 original size:20 final size:20
Alignment explanation
Indices: 49036838--49036895 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
49036828 GCAAAAATCA
49036838 AAAGTATCGATACCCTTGTC
1 AAAGTATCGATACCCTTGTC
* *
49036858 ATAGTATCGATA-CCTTCCTC
1 AAAGTATCGATACCCTT-GTC
*
49036878 AAAGTATTGATACCCTTG
1 AAAGTATCGATACCCTTG
49036896 ACAGTATAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 4 0.13
20 23 0.74
21 4 0.13
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (20 bp):
AAAGTATCGATACCCTTGTC
Found at i:49042317 original size:24 final size:24
Alignment explanation
Indices: 49042281--49042327 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
49042271 TAATATTAAT
* * *
49042281 ACCAATTGTGCTAAGACTCAATCG
1 ACCAACTGAGCTAAAACTCAATCG
*
49042305 ACCAACTGAGCTAAAACTTAATC
1 ACCAACTGAGCTAAAACTCAATC
49042328 AACTTTTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (24 bp):
ACCAACTGAGCTAAAACTCAATCG
Found at i:49044951 original size:83 final size:83
Alignment explanation
Indices: 49044801--49044956 Score: 179
Period size: 83 Copynumber: 1.9 Consensus size: 83
49044791 TATGCATAGG
* ** ** *
49044801 GTTTAAGGTTTAAGGTTTATTTTAGTACCCTCAAACATGATTTTGAATTTGTATAGTAAATGAAA
1 GTTTAAGGTTTAAGGTTTATTTTAGTACCCTCAAACATGATCTCAAATTTGTATAACAAAAGAAA
*
49044866 TGTTTTTTTATATATACA
66 TGTATTTTTATATATACA
* * * * * *
49044884 GTTTGAGGTTTAGGGTTT-TTTTGGGTACCTTTAAACATGATCTCAAATTTGTATAACAAAAGTA
1 GTTTAAGGTTTAAGGTTTATTTT-AGTACCCTCAAACATGATCTCAAATTTGTATAACAAAAGAA
49044948 ATGTATTTT
65 ATGTATTTT
49044957 ATGTACAGGG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
82 4 0.07
83 55 0.93
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.45
Consensus pattern (83 bp):
GTTTAAGGTTTAAGGTTTATTTTAGTACCCTCAAACATGATCTCAAATTTGTATAACAAAAGAAA
TGTATTTTTATATATACA
Found at i:49046047 original size:24 final size:25
Alignment explanation
Indices: 49045991--49046047 Score: 82
Period size: 24 Copynumber: 2.3 Consensus size: 25
49045981 TAAAATATAT
49045991 TTAAAAAATTAGTAGTGAGGTTAAC
1 TTAAAAAATTAGTAGTGAGGTTAAC
*
49046016 TCT-TAAAA-TAGTAGTGAGGTTAAC
1 T-TAAAAAATTAGTAGTGAGGTTAAC
49046040 TTAAAAAA
1 TTAAAAAA
49046048 AAAAGAGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 1 0.04
24 21 0.75
25 5 0.18
26 1 0.04
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.32
Consensus pattern (25 bp):
TTAAAAAATTAGTAGTGAGGTTAAC
Found at i:49058165 original size:17 final size:18
Alignment explanation
Indices: 49058143--49058178 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
49058133 TATTTTTTAA
49058143 TAAAATATTTATAA-TTT
1 TAAAATATTTATAACTTT
*
49058160 TAAAATGTTTATAACTTT
1 TAAAATATTTATAACTTT
49058178 T
1 T
49058179 TTTAATAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (18 bp):
TAAAATATTTATAACTTT
Found at i:49060636 original size:21 final size:21
Alignment explanation
Indices: 49060612--49060658 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
49060602 CATTGAATCA
*
49060612 TAAACTCTAAACC-TAGAACCT
1 TAAACTCTAAACCATA-AACAT
* *
49060633 TAAATTTTAAACCATAAACAT
1 TAAACTCTAAACCATAAACAT
49060654 TAAAC
1 TAAAC
49060659 CTCGAACATA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (21 bp):
TAAACTCTAAACCATAAACAT
Found at i:49064250 original size:114 final size:114
Alignment explanation
Indices: 49064050--49064277 Score: 456
Period size: 114 Copynumber: 2.0 Consensus size: 114
49064040 CGGGTAGACA
49064050 AAGATCTCAACAACAAAAGGGAAACTACAAAGAGAATCAAACATGAACAAAAGAGCTTCATTCAA
1 AAGATCTCAACAACAAAAGGGAAACTACAAAGAGAATCAAACATGAACAAAAGAGCTTCATTCAA
49064115 GTGTCTACTAACAGAACATATATTTGTCTGTGTCTGTATTCATTGTTGG
66 GTGTCTACTAACAGAACATATATTTGTCTGTGTCTGTATTCATTGTTGG
49064164 AAGATCTCAACAACAAAAGGGAAACTACAAAGAGAATCAAACATGAACAAAAGAGCTTCATTCAA
1 AAGATCTCAACAACAAAAGGGAAACTACAAAGAGAATCAAACATGAACAAAAGAGCTTCATTCAA
49064229 GTGTCTACTAACAGAACATATATTTGTCTGTGTCTGTATTCATTGTTGG
66 GTGTCTACTAACAGAACATATATTTGTCTGTGTCTGTATTCATTGTTGG
49064278 TTGTCCCTTT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (114 bp):
AAGATCTCAACAACAAAAGGGAAACTACAAAGAGAATCAAACATGAACAAAAGAGCTTCATTCAA
GTGTCTACTAACAGAACATATATTTGTCTGTGTCTGTATTCATTGTTGG
Found at i:49068307 original size:18 final size:18
Alignment explanation
Indices: 49068270--49068307 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
49068260 TGGTGGGACG
*
49068270 GGTTGAGCTGCAGACTGT
1 GGTTGAGCTGCAGACGGT
49068288 GGTTGAGGCTGC-GACGGT
1 GGTTGA-GCTGCAGACGGT
49068306 GG
1 GG
49068308 AGCGGATCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.13, C:0.16, G:0.47, T:0.24
Consensus pattern (18 bp):
GGTTGAGCTGCAGACGGT
Found at i:49082108 original size:20 final size:21
Alignment explanation
Indices: 49082069--49082108 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
49082059 CGAACATTAG
*
49082069 AAATCAAAAGATTCGATCTTC
1 AAATCAAAAGATACGATCTTC
*
49082090 AAAT-AAAAGATACGTTCTT
1 AAATCAAAAGATACGATCTT
49082109 GGAATAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (21 bp):
AAATCAAAAGATACGATCTTC
Found at i:49089131 original size:12 final size:12
Alignment explanation
Indices: 49089116--49089140 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49089106 GAGAGAAGCT
49089116 TTAATTAAATGA
1 TTAATTAAATGA
49089128 TTAATTAAATGA
1 TTAATTAAATGA
49089140 T
1 T
49089141 GGGTGATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
TTAATTAAATGA
Found at i:49102150 original size:54 final size:54
Alignment explanation
Indices: 49102068--49102176 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
49102058 TCATTTTCTA
49102068 AAGTAAATAATAGTTTATTTAATATTCTTATCACTTCATATTTCTTCAGTTTAC
1 AAGTAAATAATAGTTTATTTAATATTCTTATCACTTCATATTTCTTCAGTTTAC
*
49102122 AAGTAAATAATAGTTTATTTGATATTCTTATCACTTCATATTTCTTCAGTTTAC
1 AAGTAAATAATAGTTTATTTAATATTCTTATCACTTCATATTTCTTCAGTTTAC
49102176 A
1 A
49102177 TTCAACTGAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.13, G:0.06, T:0.48
Consensus pattern (54 bp):
AAGTAAATAATAGTTTATTTAATATTCTTATCACTTCATATTTCTTCAGTTTAC
Found at i:49105595 original size:17 final size:17
Alignment explanation
Indices: 49105573--49105605 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
49105563 AGTCCAGGAA
49105573 AGAAACA-CTAAAAAGAT
1 AGAAACAGC-AAAAAGAT
49105590 AGAAACAGCAAAAAGA
1 AGAAACAGCAAAAAGA
49105606 AAAATAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.67, C:0.12, G:0.15, T:0.06
Consensus pattern (17 bp):
AGAAACAGCAAAAAGAT
Found at i:49114112 original size:199 final size:200
Alignment explanation
Indices: 49113767--49114168 Score: 707
Period size: 199 Copynumber: 2.0 Consensus size: 200
49113757 CTGTAATTCA
49113767 TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
1 TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
*
49113832 TCAATTTGACTCACTGCTGTTCGAAGGTTCAACTTGCAGACATTCTGACCAAGCCACTAGCTAAT
66 TCAATTTGACTCACTGCTATTCGAAGGTTCAACTTGCAGACATTCTGACCAAGCCACTAGCTAAT
* * * *
49113897 GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGCGTTTGCTGCTTTGTGGCTAAGGAGGAGTGTTG
131 GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
49113962 AAAGT
196 AAAGT
49113967 TGGC-AGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
1 TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
* * *
49114031 TCAATTTGACTCACTGCTATTCGGAGGTTCAGCTTGCAGACATTCTGACCAAGCCACTAGTTAAT
66 TCAATTTGACTCACTGCTATTCGAAGGTTCAACTTGCAGACATTCTGACCAAGCCACTAGCTAAT
*
49114096 GCAAGGTTTGAGTATTTGAGGAAAGGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
131 GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
*
49114161 AAATT
196 AAAGT
49114166 TGG
1 TGG
49114169 AAACAATGCA
Statistics
Matches: 192, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
199 188 0.98
200 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (200 bp):
TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
TCAATTTGACTCACTGCTATTCGAAGGTTCAACTTGCAGACATTCTGACCAAGCCACTAGCTAAT
GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
AAAGT
Found at i:49118792 original size:30 final size:31
Alignment explanation
Indices: 49118758--49118824 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
49118748 TATTTATAAA
* *
49118758 TTTTAAA-AAATTAAATTAAAATTTTATTAT
1 TTTTAAAGAAATCAAAGTAAAATTTTATTAT
*
49118788 TTTTAAAGATATCAAAGTAAAATTTTATTAT
1 TTTTAAAGAAATCAAAGTAAAATTTTATTAT
*
49118819 TATTAA
1 TTTTAA
49118825 TTTAAATTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTTAAAGAAATCAAAGTAAAATTTTATTAT
Found at i:49120339 original size:11 final size:11
Alignment explanation
Indices: 49120325--49120383 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
49120315 TAATATCTAA
* *
49120325 AAAATAACAAC
1 AAAATAATAGC
49120336 AAAATAATAGC
1 AAAATAATAGC
*
49120347 AATATAATAGC
1 AAAATAATAGC
* *
49120358 AAAATGACAGC
1 AAAATAATAGC
* *
49120369 AAAACAATAAC
1 AAAATAATAGC
49120380 AAAA
1 AAAA
49120384 AAGAGTAAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.14
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:49122642 original size:26 final size:26
Alignment explanation
Indices: 49122584--49122642 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
49122574 TCTAACAAAG
* *
49122584 ATGTTTATATTTAAAAATAAGTAATT
1 ATGTTTAAATTAAAAAATAAGTAATT
* *
49122610 TTGTTTAAATTAAAAAATAAATTAATT
1 ATGTTTAAATTAAAAAAT-AAGTAATT
49122637 AT-TTTA
1 ATGTTTA
49122643 TTAAAATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (26 bp):
ATGTTTAAATTAAAAAATAAGTAATT
Found at i:49125450 original size:6 final size:6
Alignment explanation
Indices: 49125413--49125455 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
49125403 CCAAACACAC
* *
49125413 CAGTAAA CAGTAA TCAGTAA CGGTAG CAGTAA CAGTAA CAGTA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
49125456 TTCAACACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
6 21 0.68
7 10 0.32
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:49125494 original size:51 final size:49
Alignment explanation
Indices: 49125424--49125571 Score: 147
Period size: 45 Copynumber: 3.2 Consensus size: 49
49125414 AGTAAACAGT
*
49125424 AATCAGTAACGGTAGCAGTAACAGTAACAGTATTCAACACACAAAGTG-CTG
1 AATC-GTAAC-GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-G
*
49125475 AATC-T---GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCG
1 AATCGTAACGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCG
* *
49125520 AATCG----GTAACAGTAACAGTAACAG--TTCGACACACAAAGTGCCG
1 AATCGTAACGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCG
49125563 AATCAGTAA
1 AATC-GTAA
49125572 GCCGGCAAAT
Statistics
Matches: 88, Mismatches: 3, Indels: 16
0.82 0.03 0.15
Matches are distributed among these distances:
43 22 0.25
44 1 0.01
45 59 0.67
46 1 0.01
49 1 0.01
51 4 0.05
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (49 bp):
AATCGTAACGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCG
Found at i:49125503 original size:45 final size:45
Alignment explanation
Indices: 49125439--49125571 Score: 200
Period size: 45 Copynumber: 3.0 Consensus size: 45
49125429 GTAACGGTAG
* *
49125439 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
*
49125484 CAGTAACAGTAACAGTATTCGACACACAAAGTG-TCGAATCGGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATCAGTAA
*
49125529 CAGTAACAGTAACAG--TTCGACACACAAAGTGCCGAATCAGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
49125572 GCCGGCAAAT
Statistics
Matches: 82, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
43 25 0.30
44 1 0.01
45 56 0.68
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
Found at i:49129175 original size:13 final size:13
Alignment explanation
Indices: 49129157--49129188 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
49129147 AATTCATCTT
49129157 CATTTCTTCTCTC
1 CATTTCTTCTCTC
49129170 CATTTCTTCTCTC
1 CATTTCTTCTCTC
49129183 CATTTC
1 CATTTC
49129189 GGTTCCTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.38, G:0.00, T:0.53
Consensus pattern (13 bp):
CATTTCTTCTCTC
Found at i:49132312 original size:210 final size:210
Alignment explanation
Indices: 49131940--49133185 Score: 1619
Period size: 210 Copynumber: 5.9 Consensus size: 210
49131930 TACGGGACAA
49131940 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGC-AAAAACTTAAGCAAGATTGGAGACGGAT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAA-TTAAGCAAGATTGGAGACGGAT
*
49132004 TATCTACCTCCACTTGTCTCAAAGAATTAGCTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCA
65 TATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCA
* *
49132069 AATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAATGAATTGGAAGCTCT
130 AATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCT
49132134 TCCAATAACTGGGAGG
195 TCCAATAACTGGGAGG
* * * *
49132150 TGTTCATCTCTTGAAAAGCTTAGCATTCTCGATTGCGAGAAATTAAGAAAGATTGG-GTACGGTT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAG-ACGGAT
* ** *** * **
49132214 TATCTACCTCCACTTGTCTTAAAGAATTAGAG-CTATTGTGGTGTCCTAATTTAACTTCCATTCC
65 TATCTACCTCCACTTGTCTCAAAGAATTAG-GTCTAAAGAATTGTCCTAATTTAAGTTGGATTCC
* * * * * *
49132278 AAAATTGGAAGGATTTTCGTCTATTCAGAATCTGTCAATTGATAGCTGCATCAAATTGGAAGTTC
129 AAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTC
* * *
49132343 TT-GAGATATC-CGGAGG
194 TTCCA-ATAACTGGGAGG
* * * * * ** *
49132359 ATGTTCAGT-TTTTGAAAAGCTTAGCATTTCCAAGTG-TAAAACATTATCCAAGATTGGAGACAG
1 -TGTTCA-TCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAA-ATTAAGCAAGATTGGAGACGG
* * ** *
49132422 ATTATTTACCTACACTTGTCTCAAAGAATTAAATCTAGAAG-ATTGTCCTAATTTAAGTTCGATT
63 ATTATCTACCTCCACTTGTCTCAAAGAATTAGGTCTA-AAGAATTGTCCTAATTTAAGTTGGATT
* * * * * * *
49132486 CCAAATTTGAAAGGATTTTCGTGTCTCCAAAATCTGTCAATTCATACCTGCAACGGATTGGAAGT
127 CCAAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGT
* * * *
49132551 TCTTCCGAT-ATTTGGAGCA
192 TCTTCCAATAACTGGGAG-G
* * *
49132570 TGCTCATCTCTTGAAAAGCTTAACATTTTCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGATT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
**
49132635 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTTAATTCCAA
66 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
* * * * * *
49132700 ATTTAGAAGGATTTTCCTATCTTCAAAATATCTCGATTGATAGCTGCAACGGATTGGAAGTTCTT
131 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
* *
49132765 CCAATAATTGGAAGG
196 CCAATAACTGGGAGG
* * *
49132780 TGTTCATCTCTCGAAAAGCTTAGCATTTCCGATTGCAAAAAATTAAGCAAGATTGGAGACGGATT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
* *
49132845 ATCTACCTCTACTTGTCTCAGAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
66 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
49132910 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
131 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
* *
49132975 CCGATAACTGGAAGG
196 CCAATAACTGGGAGG
* * * * * **
49132990 TGTTCATCTCTTGAAAAGCTTAGCATTTTCAATTGTGAAAAACTGAGAAAGATTGGAGACAAATT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
* * *
49133055 ATCTACCTTCATTTGTCTCAAGGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
66 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
* *
49133120 ATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAATTGATAGCTGCAATGAATTGGAAGTTCTT
131 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
49133185 C
196 C
49133186 TGGTACAAGA
Statistics
Matches: 888, Mismatches: 131, Indels: 34
0.84 0.12 0.03
Matches are distributed among these distances:
209 14 0.02
210 857 0.97
211 17 0.02
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (210 bp):
TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
CCAATAACTGGGAGG
Found at i:49133463 original size:144 final size:144
Alignment explanation
Indices: 49133196--49133687 Score: 610
Period size: 144 Copynumber: 3.4 Consensus size: 144
49133186 TGGTACAAGA
* * * * *
49133196 GTTTCAAGGAATAGAAGGCTTTCCTGAGTGGTTGGGAAATCTCTCTTCTCTATGGCGTCTA-AGT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATA-T
* *
49133260 TTGATTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACACCTCACTGCCCTTGAAGA
65 TTGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGA
49133325 TTTGACTATGTCGGG
130 TTTGACTATGTCGGG
* * *
49133340 GTTTCATGAAATAGAAGCCTTGCCAGAGTGGCTGGGAAATCTCTCTTCTCTAAAGCGTCTATATT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATATT
* * * ** * * *
49133405 TGAGTGGTTTTCGAAAGTTAAAGAGTTTTCCTCACCAACTTCAATTCCTTTCTACCCTTAAATAT
66 TGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGAT
** *
49133470 TTGACTATAG-AAGA
131 TTGACTAT-GTCGGG
* * * * * * **
49133484 GTTTCAAGGAATAGAAGCCTTTCCGGAGTGGTTGGGAAAGCTTTCTTCGCTAAGGTATCTATATT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATATT
** * * *
49133549 TGAGTGGTTTTGGAAAGCTAAAGAGCCTTCCTCACCAACTTCAACTCCCCAGTGCCCTGGAAGAT
66 TGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGAT
*
49133614 TTGACTATGTCGAG
131 TTGACTATGTCGGG
* * *
49133628 GTTTCATGAAATAGAAGCCTTGCCAGAGTTGTTGGGAAATCTCTCTTCCCTAAGGCGTCT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCT
49133688 GCATATCAAT
Statistics
Matches: 286, Mismatches: 59, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
143 1 0.00
144 283 0.99
145 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (144 bp):
GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATATT
TGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGAT
TTGACTATGTCGGG
Found at i:49143371 original size:30 final size:27
Alignment explanation
Indices: 49143302--49143381 Score: 101
Period size: 25 Copynumber: 2.9 Consensus size: 27
49143292 ATCTATATTT
49143302 ATGGAAAGTCAAAGATATGGGTATCAA
1 ATGGAAAGTCAAAGATATGGGTATCAA
* *
49143329 AT--AAAGTTAAAGATATGTGTATCAAA
1 ATGGAAAGTCAAAGATATGGGTATC-AA
49143355 TATCGGAAAGTCAAAGATATGGGTATC
1 -AT-GGAAAGTCAAAGATATGGGTATC
49143382 GAGATATTGG
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 19 0.43
26 2 0.05
27 4 0.09
30 19 0.43
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (27 bp):
ATGGAAAGTCAAAGATATGGGTATCAA
Found at i:49147998 original size:25 final size:25
Alignment explanation
Indices: 49147963--49148038 Score: 125
Period size: 25 Copynumber: 3.0 Consensus size: 25
49147953 ATATTTATGG
49147963 AAAGTCAAAGATATGGGTATCAAAT
1 AAAGTCAAAGATATGGGTATCAAAT
*
49147988 GAAGTCAAAGATATGGGTATCAAAT
1 AAAGTCAAAGATATGGGTATCAAAT
* *
49148013 AAAGTCAAAAATATGGGTATTAAAT
1 AAAGTCAAAGATATGGGTATCAAAT
49148038 A
1 A
49148039 TTAGAAAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.49, C:0.07, G:0.20, T:0.25
Consensus pattern (25 bp):
AAAGTCAAAGATATGGGTATCAAAT
Found at i:49150980 original size:15 final size:16
Alignment explanation
Indices: 49150944--49150981 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
49150934 TTATAGTTTG
*
49150944 AATTTGTTCTAGCTACT
1 AATTTGTTCTA-CTAAT
49150961 AATTTGTTCTA-TAAT
1 AATTTGTTCTACTAAT
49150976 AATTTG
1 AATTTG
49150982 GTGATACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
17 11 0.55
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (16 bp):
AATTTGTTCTACTAAT
Found at i:49152330 original size:10 final size:11
Alignment explanation
Indices: 49152304--49152329 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
49152294 AAAAATTTAA
49152304 AAAAATATTTT
1 AAAAATATTTT
49152315 AAAAATATTTT
1 AAAAATATTTT
49152326 AAAA
1 AAAA
49152330 TTAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:49153330 original size:18 final size:21
Alignment explanation
Indices: 49153290--49153345 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
49153280 TAATGTTTAC
*
49153290 ATTATAATATTATTATTTATT
1 ATTATAATATTATAATTTATT
49153311 ATTATAA-ATT-TAATTTTTATGT
1 ATTATAATATTATAA--TTTAT-T
49153333 ATTATAA-ATTATA
1 ATTATAATATTATA
49153346 TAATATATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 3 0.10
21 12 0.40
22 11 0.37
23 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTATAATATTATAATTTATT
Found at i:49153349 original size:25 final size:24
Alignment explanation
Indices: 49153296--49153349 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
49153286 TTACATTATA
*
49153296 ATATTATTATTTATTATTATAAAT
1 ATATAATTATTTATTATTATAAAT
49153320 -T-TAATT-TTTATGTATTATAAATT
1 ATATAATTATTTAT-TATTATAAA-T
49153343 ATATAAT
1 ATATAAT
49153350 ATATGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 5 0.20
22 13 0.52
23 2 0.08
24 1 0.04
25 4 0.16
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
ATATAATTATTTATTATTATAAAT
Found at i:49154617 original size:31 final size:31
Alignment explanation
Indices: 49154582--49154640 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
49154572 CAATCTAGTG
49154582 ACTTAAATAAAAACTTTCGAATAGTTTAATA
1 ACTTAAATAAAAACTTTCGAATAGTTTAATA
* *
49154613 ACTTAAATGAAAACTTTTGAATAGTTTA
1 ACTTAAATAAAAACTTTCGAATAGTTTA
49154641 GTGATCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.37
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTCGAATAGTTTAATA
Found at i:49157009 original size:46 final size:46
Alignment explanation
Indices: 49156935--49157119 Score: 255
Period size: 46 Copynumber: 4.0 Consensus size: 46
49156925 CATGGTAAAG
*
49156935 TGTGGAACGTAGGTATGGCATTTCAGTAAAGAAAACCATACTGAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
** *
49156981 TGTGGAACGTAAATATGGTATTAT-AGTAAAGAAAACCATATTGAGT
1 TGTGGAACGTAGGTATGGTATT-TCAGTAAAGAAAACCATACTGAGT
* *
49157027 TGTGGAACGTAGGTATGATATTTCAGTAAAGAAAACCATACTAAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
* * * * *
49157073 TGTGAAAAGTAGGTATAGTATTTCAGTGAAGAAAATCATACTGAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
49157119 T
1 T
49157120 ATAGCATTGT
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.01
46 119 0.98
47 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (46 bp):
TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
Found at i:49157868 original size:21 final size:19
Alignment explanation
Indices: 49157817--49157869 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
49157807 ATTAACATTT
*
49157817 TTTAATGTTTATATTATAA
1 TTTAATTTTTATATTATAA
49157836 TATT-ATTATTTACTATTATAGA
1 T-TTAATT-TTTA-TATTATA-A
49157858 TTTAATTTTTAT
1 TTTAATTTTTAT
49157870 GTATTATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
19 3 0.11
20 7 0.25
21 13 0.46
22 5 0.18
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTAATTTTTATATTATAA
Found at i:49158330 original size:6 final size:6
Alignment explanation
Indices: 49158319--49158347 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
49158309 TCATTCCACA
49158319 GCATCT GCATCT GCATCT GCATCT GCATC
1 GCATCT GCATCT GCATCT GCATCT GCATC
49158348 ATCCACCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.31
Consensus pattern (6 bp):
GCATCT
Found at i:49159186 original size:9 final size:9
Alignment explanation
Indices: 49159128--49159186 Score: 66
Period size: 9 Copynumber: 6.6 Consensus size: 9
49159118 AAATTACAAA
49159128 AAAAATTAT
1 AAAAATTAT
*
49159137 TAAAATTAT
1 AAAAATTAT
*
49159146 TAAAATTATT
1 AAAAATTA-T
* *
49159156 TAAAA-TAG
1 AAAAATTAT
49159164 AAAAATTAT
1 AAAAATTAT
49159173 AAAAATTAT
1 AAAAATTAT
49159182 AAAAA
1 AAAAA
49159187 CTAACATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
8 4 0.09
9 34 0.77
10 6 0.14
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:49159186 original size:18 final size:18
Alignment explanation
Indices: 49159128--49159186 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
49159118 AAATTACAAA
49159128 AAAAATTATTAAAATTAT
1 AAAAATTATTAAAATTAT
* *
49159146 TAAAATTATTTAAAA-TAG
1 AAAAATTA-TTAAAATTAT
*
49159164 AAAAATTATAAAAATTAT
1 AAAAATTATTAAAATTAT
49159182 AAAAA
1 AAAAA
49159187 CTAACATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
17 5 0.15
18 23 0.68
19 6 0.18
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAAATTATTAAAATTAT
Found at i:49159979 original size:6 final size:6
Alignment explanation
Indices: 49159968--49159996 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
49159958 TTAGTGATTT
49159968 AATATA AATATA AATATA AATATA AATAT
1 AATATA AATATA AATATA AATATA AATAT
49159997 TATTTAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATATA
Found at i:49160254 original size:56 final size:57
Alignment explanation
Indices: 49160143--49160259 Score: 155
Period size: 56 Copynumber: 2.1 Consensus size: 57
49160133 ATATTTTATT
* * * * *
49160143 AAAAGAAAAAAATTTAATATAAAAAATTCATTGGCGCCTGTCAGAGAATCGCCATTA
1 AAAAGAAAAAAATATAATATAAAAAATTCATTAGCGCCTGTCAAAGAAGCACCATTA
* * *
49160200 AAAAGAAAAAAA-ATAATATAAAAAATTCATTAGCTCCTGTCAAATAGGCACCATTA
1 AAAAGAAAAAAATATAATATAAAAAATTCATTAGCGCCTGTCAAAGAAGCACCATTA
49160256 AAAA
1 AAAA
49160260 AAATACCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
56 40 0.77
57 12 0.23
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.23
Consensus pattern (57 bp):
AAAAGAAAAAAATATAATATAAAAAATTCATTAGCGCCTGTCAAAGAAGCACCATTA
Found at i:49161592 original size:31 final size:31
Alignment explanation
Indices: 49161557--49161617 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
49161547 ACAATCTAAT
49161557 AACTTAAATAAAAACTTTCGAATAGTTTAGA
1 AACTTAAATAAAAACTTTCGAATAGTTTAGA
* *
49161588 AACTTAAATGAAAACTTTTGAATAGTTTAG
1 AACTTAAATAAAAACTTTCGAATAGTTTAG
49161618 TGATCATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (31 bp):
AACTTAAATAAAAACTTTCGAATAGTTTAGA
Found at i:49167082 original size:279 final size:279
Alignment explanation
Indices: 49166582--49167142 Score: 1027
Period size: 279 Copynumber: 2.0 Consensus size: 279
49166572 GCTTGGAGCG
49166582 GCTGGAGATTACGAGGTGTCCCTTGTTGAAAAGTGTTCCACTAACGGGACAATGCTCATCTCTTC
1 GCTGGAGATTACGAGGTGTCCCTTGTTGAAAAGTGTTCCACTAACGGGACAATGCTCATCTCTTC
49166647 AAAAGCTTCACATTTCCAGTTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCACT
66 AAAAGCTTCACATTTCCAGTTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCACT
49166712 TGTCTCAAAAAATTACATCTAGGCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATT
131 TGTCTCAAAAAATTACATCTAGGCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATT
* * *
49166777 TTCCTCTCTTCAAGATCTGTCAGTTTGTGGGTGCCTCAAATTGGAAGTTCTTCCAATAACTGGAG
196 TTCCTCTCTTCAAGATCTGTCAGTTTGGGGGTGCCTCAAATTGGAAGTTCTTCCAATAACGGGAC
* *
49166842 GATGTTCA-TCTCTTGAAGA
261 AATGTT-ATTCTCTTGAAAA
49166861 GCTGGAGATTACGAGGTGTCCCTTGTTGAAAAGTGTTCCACTAACGGGACAATGCTCATCTCTTC
1 GCTGGAGATTACGAGGTGTCCCTTGTTGAAAAGTGTTCCACTAACGGGACAATGCTCATCTCTTC
**
49166926 AAAAGCTTCACATTT-GGGATTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCAC
66 AAAAGCTTCACATTTCCAG-TTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCAC
49166990 TTGTCTCAAAAAATTACATCTAGGCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGAT
130 TTGTCTCAAAAAATTACATCTAGGCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGAT
49167055 TTTCCTCTCTTCAAGATCTGTCAGTTTGGGGGTGCCTCAAATTGGAAGTTCTTCCAATAACGGGA
195 TTTCCTCTCTTCAAGATCTGTCAGTTTGGGGGTGCCTCAAATTGGAAGTTCTTCCAATAACGGGA
49167120 CAATGTTATTCTCTTGAAAA
260 CAATGTTATTCTCTTGAAAA
49167140 GCT
1 GCT
49167143 TCGCATTTGC
Statistics
Matches: 273, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
278 2 0.01
279 271 0.99
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (279 bp):
GCTGGAGATTACGAGGTGTCCCTTGTTGAAAAGTGTTCCACTAACGGGACAATGCTCATCTCTTC
AAAAGCTTCACATTTCCAGTTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCACT
TGTCTCAAAAAATTACATCTAGGCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATT
TTCCTCTCTTCAAGATCTGTCAGTTTGGGGGTGCCTCAAATTGGAAGTTCTTCCAATAACGGGAC
AATGTTATTCTCTTGAAAA
Found at i:49167264 original size:210 final size:212
Alignment explanation
Indices: 49166896--49167745 Score: 1306
Period size: 210 Copynumber: 4.0 Consensus size: 212
49166886 TTGAAAAGTG
* * * * * *
49166896 TTCCACTAACGGGACAATGCTCATCTCTTCAAAAGCTTCACATTTGGGA-TTGTGAAAAATTAAG
1 TTCCAATAACCGGACAATGTTCATCTCTTGAAAAGCTTCGCATTTGCGAGTTGTGAAAAATTAAG
* *
49166960 CAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTACATCTAGGCA-ATTGTCCT
66 CAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAAATCTAAGCAGATTGTCCT
* **
49167024 GATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTTGGGGGTG
131 GATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCGAAGGTG
*
49167089 CCTCAAATTGGAAGTTC
196 CCACAAATTGGAAGTTC
*
49167106 TTCCAATAACGGGACAATGTT-ATTCTCTTGAAAAGCTTCGCATTTGCGA-TTGTGAAAAATTAA
1 TTCCAATAACCGGACAATGTTCA-TCTCTTGAAAAGCTTCGCATTTGCGAGTTGTGAAAAATTAA
* *
49167169 GCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAAATCTAATCA-TTTGTCC
65 GCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAAATCTAAGCAGATTGTCC
* * *
49167233 TGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTT
130 TGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCGAAGGT
* *
49167298 GCAAGAAATTGGAAGTTC
195 GCCACAAATTGGAAGTTC
** *
49167316 TTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTT-CCAGTTGTGAAAAATTAAG
1 TTCCAATAACCGGACAATGTTCATCTCTTGAAAAGCTTCGCATTTGCGAGTTGTGAAAAATTAAG
* *
49167380 CAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAGATCT-AGTAGATTGTCCT
66 CAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAAATCTAAGCAGATTGTCCT
* *
49167444 GATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTTGGAGGTG
131 GATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCGAAGGTG
*
49167509 CCTCAAATTGGAAGTTC
196 CCACAAATTGGAAGTTC
** * *
49167526 TTCCAATAACCGGAGGATGTTCATCTCTTGAAGAGCTTTC-CATTTAC-AGTTGTGAAAAATTAA
1 TTCCAATAACCGGACAATGTTCATCTCTTGAAAAGC-TTCGCATTTGCGAGTTGTGAAAAATTAA
49167589 GCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAAATCT-AGCAGATTGTCC
65 GCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAAATCTAAGCAGATTGTCC
*
49167653 TGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGAAGGT
130 TGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCGAAGGT
*
49167718 GCGACAAATTGGAAGTTC
195 GCCACAAATTGGAAGTTC
49167736 TTCCAATAAC
1 TTCCAATAAC
49167746 AGCACCACTG
Statistics
Matches: 593, Mismatches: 41, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
209 5 0.01
210 583 0.98
211 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (212 bp):
TTCCAATAACCGGACAATGTTCATCTCTTGAAAAGCTTCGCATTTGCGAGTTGTGAAAAATTAAG
CAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAAAATTAAATCTAAGCAGATTGTCCT
GATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCGAAGGTG
CCACAAATTGGAAGTTC
Found at i:49170293 original size:42 final size:42
Alignment explanation
Indices: 49170234--49170316 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
49170224 CACCGTAAAG
49170234 AAAAATTATTCAAGGTGATATTTGATTTTGGACGGTGTGATC
1 AAAAATTATTCAAGGTGATATTTGATTTTGGACGGTGTGATC
49170276 AAAAATTATTCAAGGTGATATTTGATTTTGGACGGTGTGAT
1 AAAAATTATTCAAGGTGATATTTGATTTTGGACGGTGTGAT
49170317 AGTGGGAGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (42 bp):
AAAAATTATTCAAGGTGATATTTGATTTTGGACGGTGTGATC
Found at i:49171164 original size:210 final size:210
Alignment explanation
Indices: 49170802--49172266 Score: 2668
Period size: 210 Copynumber: 7.0 Consensus size: 210
49170792 TAACGGGACA
49170802 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
49170867 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGTTTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
49170932 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
*
49170997 TCCAATAACTGGAGG
196 TCCAATAACCGGAGG
49171012 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
49171077 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
49171142 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
49171207 TCCAATAACCGGAGG
196 TCCAATAACCGGAGG
* *
49171222 ATGTTCATCTCTTGAAAAGCTTCGCATTTACGATTGTGAAAAATTAAGCAAGATTGGAGATGTAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
49171287 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGTCA-ATTGTCCTGATTTAAGTTCGATCCC
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAG-CAGATTGTCCTGATTTAAGTTCGATCCC
* * * ***
49171351 AAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTTGGA-GGTGCCTCAAATTGGAAGTT
130 AAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAG-TTCGATGTTGCAAGAAATTGGAAGTT
49171415 CTTCCAATAACCGGAGG
194 CTTCCAATAACCGGAGG
* *
49171432 ATGTTCATCTCTTGAAGAGCTTTC-CATTTAC-AGTTAGTGAAAAATTAAGCAAGATTGGAGATG
1 ATGTTCATCTCTTGAAAAGC-TTCGCATTTGCGA-TT-GTGAAAAATTAAGCAAGATTGGAGATG
49171495 GATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATC
63 GATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATC
*
49171560 CCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCCATGTTGCAAGAAATTGGAAGT
128 CCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGT
49171625 TCTTCCAATAACCGGAGG
193 TCTTCCAATAACCGGAGG
49171643 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* *
49171708 TATCTACCTCCACTTGTCTCGAAGAATTACATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
*
49171773 AATTTGGAAGGATTTTCCTCTCTTTAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
49171838 TCCAATAACCGGAGG
196 TCCAATAACCGGAGG
49171853 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
49171918 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
49171983 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
49172048 TCCAATAACCGGAGG
196 TCCAATAACCGGAGG
*
49172063 ATGTTCATCTCTTGAAAAGCTTCGCATTTACGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
49172128 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGTAGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
* * *
49172193 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGGTGCGACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
49172258 TCCAATAAC
196 TCCAATAAC
49172267 AGCACCACTG
Statistics
Matches: 1213, Mismatches: 33, Indels: 18
0.96 0.03 0.01
Matches are distributed among these distances:
209 1 0.00
210 1015 0.84
211 196 0.16
212 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (210 bp):
ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
TCCAATAACCGGAGG
Found at i:49172040 original size:631 final size:630
Alignment explanation
Indices: 49170802--49172266 Score: 2677
Period size: 631 Copynumber: 2.3 Consensus size: 630
49170792 TAACGGGACA
*
49170802 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTACGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
49170867 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGTTTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
49170932 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
*
49170997 TCCAATAACTGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCA
196 TCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCA
*
49171062 AGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGAT
261 AGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTACATCTAGCAGATTGTCCTGAT
49171127 TTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAA
326 TTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAA
49171192 GAAATTGGAAGTTCTTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTACGATT
391 GAAATTGGAAGTTCTTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTACGATT
*
49171257 GTGAAAAATTAAGCAAGATTGGAGATGTATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTA
456 GTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTA
49171322 GTCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTC
521 GTCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTC
* **
49171387 AGTTTGGAGGTGCCTCAAATTGGAAGTTCTTCCAATAACCGGAGG
586 AGTTTCGAGGTGCAACAAATTGGAAGTTCTTCCAATAACCGGAGG
*
49171432 ATGTTCATCTCTTGAAGAGCTTTC-CATTTAC-AGTTAGTGAAAAATTAAGCAAGATTGGAGATG
1 ATGTTCATCTCTTGAAAAGC-TTCGCATTTACGA-TT-GTGAAAAATTAAGCAAGATTGGAGATG
49171495 GATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATC
63 GATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATC
*
49171560 CCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCCATGTTGCAAGAAATTGGAAGT
128 CCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGT
49171625 TCTTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAA
193 TCTTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAA
*
49171690 GCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCGAAGAATTACATCTAGCAGATTGTCCT
258 GCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTACATCTAGCAGATTGTCCT
*
49171755 GATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTTAATATCTGTCAGTTCGATGTTG
323 GATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTG
*
49171820 CAAGAAATTGGAAGTTCTTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTGCG
388 CAAGAAATTGGAAGTTCTTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTACG
49171885 ATTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTAGAT
453 ATTGTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTAGAT
*
49171950 CTAG-CAGATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATC
518 CTAGTCA-ATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATC
* *
49172014 TGTCAG-TTCGATGTTGCAAGAAATTGGAAGTTCTTCCAATAACCGGAGG
582 TGTCAGTTTCGA-GGTGCAACAAATTGGAAGTTCTTCCAATAACCGGAGG
49172063 ATGTTCATCTCTTGAAAAGCTTCGCATTTACGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTACGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
49172128 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGTAGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
* * *
49172193 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGGTGCGACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
49172258 TCCAATAAC
196 TCCAATAAC
49172267 AGCACCACTG
Statistics
Matches: 806, Mismatches: 22, Indels: 14
0.96 0.03 0.02
Matches are distributed among these distances:
629 1 0.00
630 200 0.25
631 604 0.75
632 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (630 bp):
ATGTTCATCTCTTGAAAAGCTTCGCATTTACGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGCAGATTGTCCTGATTTAAGTTCGATCCCA
AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAAGAAATTGGAAGTTCT
TCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCA
AGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTACATCTAGCAGATTGTCCTGAT
TTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGATGTTGCAA
GAAATTGGAAGTTCTTCCAATAACCGGAGGATGTTCATCTCTTGAAAAGCTTCGCATTTACGATT
GTGAAAAATTAAGCAAGATTGGAGATGGATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTA
GTCAATTGTCCTGATTTAAGTTCGATCCCAAATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTC
AGTTTCGAGGTGCAACAAATTGGAAGTTCTTCCAATAACCGGAGG
Found at i:49177424 original size:29 final size:27
Alignment explanation
Indices: 49177373--49177427 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 27
49177363 TATTTTTATA
49177373 TTTTATATTTTTTTGTAAATTTTAAAG
1 TTTTATATTTTTTTGTAAATTTTAAAG
*
49177400 TTTTAATATTTTTTTTGTAAGTTTTAAA
1 TTTT-ATA-TTTTTTTGTAAATTTTAAA
49177428 AAAATTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.16
28 3 0.12
29 18 0.72
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (27 bp):
TTTTATATTTTTTTGTAAATTTTAAAG
Found at i:49184086 original size:6 final size:6
Alignment explanation
Indices: 49184077--49184108 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
49184067 TCACCACCAG
49184077 CAGCAT CAGCAT CAGCAT CAGCAT CAGCAT CA
1 CAGCAT CAGCAT CAGCAT CAGCAT CAGCAT CA
49184109 ACAACAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (6 bp):
CAGCAT
Found at i:49201687 original size:65 final size:65
Alignment explanation
Indices: 49201608--49201741 Score: 250
Period size: 65 Copynumber: 2.1 Consensus size: 65
49201598 AAATTGTTAG
* *
49201608 TGAACTATTTGAATATGAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAT
1 TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
49201673 TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
1 TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
49201738 TGAA
1 TGAA
49201742 TAGGTTACTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.37
Consensus pattern (65 bp):
TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
Found at i:49224369 original size:33 final size:33
Alignment explanation
Indices: 49224332--49224394 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
49224322 AAAATTCTAA
49224332 TAAATGAA-AAAAATATATAA-ATTTATTAAATAT
1 TAAATGAAGAAAAATATA-AATATTT-TTAAATAT
* *
49224365 TAAATTAAGAATAATATAAATATTTTTAAA
1 TAAATGAAGAAAAATATAAATATTTTTAAA
49224395 AAATTCAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (33 bp):
TAAATGAAGAAAAATATAAATATTTTTAAATAT
Found at i:49224411 original size:33 final size:32
Alignment explanation
Indices: 49224340--49224414 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 32
49224330 AATAAATGAA
*
49224340 AAAAAT-ATATAAATTTATTAAATATTAAATT
1 AAAAATAATATAAATTTATTAAAAATTAAATT
* * *
49224371 AAGAATAATATAAATATTTTTAAAAAATTCAA-T
1 AAAAATAATATAAAT-TTATT-AAAAATTAAATT
49224404 AAAAATAATAT
1 AAAAATAATAT
49224415 GAGTATGAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 5 0.14
32 8 0.22
33 15 0.42
34 8 0.22
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (32 bp):
AAAAATAATATAAATTTATTAAAAATTAAATT
Found at i:49233739 original size:7 final size:7
Alignment explanation
Indices: 49233727--49233753 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
49233717 TAGAATACTA
49233727 AAATAAT
1 AAATAAT
49233734 AAATAAT
1 AAATAAT
49233741 AAATAAT
1 AAATAAT
49233748 AAATAA
1 AAATAA
49233754 AGGGATGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATAAT
Found at i:49233958 original size:4 final size:4
Alignment explanation
Indices: 49233944--49233995 Score: 59
Period size: 4 Copynumber: 13.0 Consensus size: 4
49233934 ACAAAAAGAG
* * ** *
49233944 TAAA GAAA TAAA TAAA TGAA TGGA TACA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
49233992 TAAA
1 TAAA
49233996 ACAAAACAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:49239279 original size:188 final size:189
Alignment explanation
Indices: 49239052--49239436 Score: 569
Period size: 188 Copynumber: 2.0 Consensus size: 189
49239042 TTTCAATTTT
*
49239052 AAAATTTTCAATCCCTGTACTTTATTTGACTTATTTGATAGCCCAAGCTAC-TGGAGTTTAAACT
1 AAAATTTTCAATCCCTGTACTTTATTTGACTTATTTGATAGCCCAAGCT-CTTGGAGTTCAAACT
** *
49239116 TGACTTTGCAATTATGGAGCTAAATTTGAAATTCTTTTATGAGTTGTTGTTTTTAGAGATAATAG
65 TGACTTTGCAATTATCAAGCTAAATTTGAAATTCTTTTATGAGTTGTTGTTTTTAGAGACAATAG
* *
49239181 AGTAATTATAAGAAAATTTAATTATT-A-AGGTAGTAATTATATCTTCTTGTAATTACAA
130 AGTAATTATAAGAAAATTTAACTATTAATAGGTAGTAATTATATCTTCTAGTAATTACAA
* * *
49239239 AAAATTTTCAATCCCTGTACTTTAATTTGACTTATTTGATAGCTCAAGCTCTTTGAGTTCAAGCT
1 AAAATTTTCAATCCCTGTACTTT-ATTTGACTTATTTGATAGCCCAAGCTCTTGGAGTTCAAACT
* ** *
49239304 TGACTTTGCAATTATCAAGGTAAATTTGAGTTTCTTTTATGAGTTGTTGTTTTTAGAGACCATAG
65 TGACTTTGCAATTATCAAGCTAAATTTGAAATTCTTTTATGAGTTGTTGTTTTTAGAGACAATAG
* * * *
49239369 AGTAGTTGTAAGAAAGTTTAACTATTAATATGTAGTAATTATATCTTCTAGTAATTACAA
130 AGTAATTATAAGAAAATTTAACTATTAATAGGTAGTAATTATATCTTCTAGTAATTACAA
*
49239429 TAAATTTT
1 AAAATTTT
49239437 AATTTCAGTG
Statistics
Matches: 176, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
187 24 0.14
188 115 0.65
189 1 0.01
190 36 0.20
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (189 bp):
AAAATTTTCAATCCCTGTACTTTATTTGACTTATTTGATAGCCCAAGCTCTTGGAGTTCAAACTT
GACTTTGCAATTATCAAGCTAAATTTGAAATTCTTTTATGAGTTGTTGTTTTTAGAGACAATAGA
GTAATTATAAGAAAATTTAACTATTAATAGGTAGTAATTATATCTTCTAGTAATTACAA
Found at i:49242729 original size:19 final size:21
Alignment explanation
Indices: 49242700--49242744 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
49242690 AGTTTTGAAA
49242700 TAAAAACTAAAATAAA-A-TTT
1 TAAAAACT-AAATAAATACTTT
49242720 TAAAAA-TAAATAAATACTTT
1 TAAAAACTAAATAAATACTTT
49242740 TAAAA
1 TAAAA
49242745 CTTAAAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 14 0.61
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (21 bp):
TAAAAACTAAATAAATACTTT
Found at i:49256381 original size:59 final size:59
Alignment explanation
Indices: 49256315--49256433 Score: 202
Period size: 59 Copynumber: 2.0 Consensus size: 59
49256305 TATATTTAAG
* *
49256315 ATAATCGAGTTAAATGAAATTTAAATTGAATCAATTAAATTAGGTTCTCATTTCATGTC
1 ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTAAATTAAGTTCTCATTTCATGTC
* *
49256374 ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTGAATTAAGTTTTCATTTCATGTC
1 ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTAAATTAAGTTCTCATTTCATGTC
49256433 A
1 A
49256434 AATAAAAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.39
Consensus pattern (59 bp):
ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTAAATTAAGTTCTCATTTCATGTC
Found at i:49259081 original size:23 final size:24
Alignment explanation
Indices: 49259020--49259086 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 24
49259010 AGAAAAAAAT
49259020 ATAAATTATAATTA-AAATTAATA
1 ATAAATTATAATTATAAATTAATA
** * *
49259043 ATAACGTACAATTATAATTTAA-A
1 ATAAATTATAATTATAAATTAATA
*
49259066 ATAAATTATAAATATAAATTA
1 ATAAATTATAATTATAAATTA
49259087 TATGAAATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 28 0.82
24 6 0.18
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (24 bp):
ATAAATTATAATTATAAATTAATA
Found at i:49259084 original size:13 final size:13
Alignment explanation
Indices: 49259016--49259088 Score: 50
Period size: 13 Copynumber: 6.1 Consensus size: 13
49259006 ACTTAGAAAA
49259016 AAATATAAATTAT
1 AAATATAAATTAT
*
49259029 AATTA-AAATTA-
1 AAATATAAATTAT
* ** *
49259040 ATA-ATAACGTAC
1 AAATATAAATTAT
*
49259052 AATTAT-AATT-T
1 AAATATAAATTAT
49259063 AAA-ATAAATTAT
1 AAATATAAATTAT
49259075 AAATATAAATTAT
1 AAATATAAATTAT
49259088 A
1 A
49259089 TGAAATTTTC
Statistics
Matches: 43, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
10 3 0.07
11 11 0.26
12 13 0.30
13 16 0.37
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (13 bp):
AAATATAAATTAT
Found at i:49262126 original size:56 final size:54
Alignment explanation
Indices: 49262005--49262127 Score: 142
Period size: 56 Copynumber: 2.2 Consensus size: 54
49261995 TTATTTTTTC
* *
49262005 AATTATATTTTATTTTAAATTTTCTAGAAGTTAGATTTTTTTTTAATTTATCTAT
1 AATT-TATTTTATTTTAAATTTTCTAGAAGTTAAAATTTTTTTTAATTTATCTAT
* * *
49262060 -ATATACTTTTATTTTAATTATTTT-TAGGAAGTTAAAATTTTTTTTAATTTGTCTTT
1 AATTTA-TTTTATTTTAA--ATTTTCTA-GAAGTTAAAATTTTTTTTAATTTATCTAT
49262116 AATTTATTTTAT
1 AATTTATTTTAT
49262128 ATTTTTAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
53 2 0.04
54 13 0.23
55 2 0.04
56 36 0.63
57 4 0.07
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (54 bp):
AATTTATTTTATTTTAAATTTTCTAGAAGTTAAAATTTTTTTTAATTTATCTAT
Found at i:49266019 original size:42 final size:42
Alignment explanation
Indices: 49265960--49266046 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
49265950 TTGGGACCTA
49265960 ATGTGGTTAATTGTTTGGATTGCCTAAATTGAATGGAAATTT
1 ATGTGGTTAATTGTTTGGATTGCCTAAATTGAATGGAAATTT
49266002 ATGTGGTTAATTGTTTGGATTGCCTAAATTGAATGGAAATTT
1 ATGTGGTTAATTGTTTGGATTGCCTAAATTGAATGGAAATTT
49266044 ATG
1 ATG
49266047 ATTGCAATGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.43
Consensus pattern (42 bp):
ATGTGGTTAATTGTTTGGATTGCCTAAATTGAATGGAAATTT
Found at i:49271134 original size:17 final size:17
Alignment explanation
Indices: 49271112--49271145 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49271102 ATCCACTAAT
*
49271112 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
49271129 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
49271146 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:49275772 original size:17 final size:17
Alignment explanation
Indices: 49275750--49275783 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49275740 ATCCACTAAT
*
49275750 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
49275767 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
49275784 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:49278774 original size:19 final size:18
Alignment explanation
Indices: 49278752--49278794 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
49278742 AATTACAAAA
* *
49278752 AAAAATCAAAATAATTTTT
1 AAAAATAAAAAT-ATTTAT
*
49278771 AAAATTAAAAATATTTAT
1 AAAAATAAAAATATTTAT
49278789 AAAAAT
1 AAAAAT
49278795 TCTAAAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAAATAAAAATATTTAT
Found at i:49278832 original size:25 final size:24
Alignment explanation
Indices: 49278781--49278835 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
49278771 AAAATTAAAA
* *
49278781 ATATTTATAAAAATTCTAAAATTT
1 ATATTTAAAAAAATTCTAAAATAT
49278805 ATATTTAAAAAAAATTCTAAAGAATAT
1 ATATTT-AAAAAAATTCT-AA-AATAT
49278832 ATAT
1 ATAT
49278836 AGAAAGGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 6 0.23
25 10 0.38
26 2 0.08
27 8 0.31
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
ATATTTAAAAAAATTCTAAAATAT
Found at i:49279238 original size:18 final size:18
Alignment explanation
Indices: 49279198--49279241 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
49279188 GAAAAAAAAT
*
49279198 AATTT-TAAAATTTTAAA
1 AATTTATAAAAATTTAAA
*
49279215 ATATTTATAAAAATTTCAA
1 A-ATTTATAAAAATTTAAA
49279234 AATTTATA
1 AATTTATA
49279242 TATTTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 11 0.48
19 11 0.48
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTTATAAAAATTTAAA
Found at i:49279768 original size:32 final size:32
Alignment explanation
Indices: 49279743--49279817 Score: 150
Period size: 32 Copynumber: 2.3 Consensus size: 32
49279733 GATTTTATTA
49279743 TATATATTTTTACAAAGTGTATGATTTTTCTT
1 TATATATTTTTACAAAGTGTATGATTTTTCTT
49279775 TATATATTTTTACAAAGTGTATGATTTTTCTT
1 TATATATTTTTACAAAGTGTATGATTTTTCTT
49279807 TATATATTTTT
1 TATATATTTTT
49279818 TTAAATTTGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (32 bp):
TATATATTTTTACAAAGTGTATGATTTTTCTT
Found at i:49285229 original size:29 final size:29
Alignment explanation
Indices: 49285192--49285266 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 29
49285182 TAAATCAATG
49285192 AAAATTCATGTATATAATTA-CATCAAATC
1 AAAATTCATGTATA-AATTACCATCAAATC
*
49285221 AAAATTCATGTATCAAATTACTCATTAAATC
1 AAAATTCATGTAT-AAATTAC-CATCAAATC
* *
49285252 AAAGTTCAAGTATAA
1 AAAATTCATGTATAA
49285267 TTTTAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
29 18 0.45
30 3 0.08
31 19 0.47
ACGTcount: A:0.48, C:0.13, G:0.05, T:0.33
Consensus pattern (29 bp):
AAAATTCATGTATAAATTACCATCAAATC
Found at i:49294543 original size:18 final size:18
Alignment explanation
Indices: 49294522--49294567 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
49294512 AAGAATATAT
49294522 TTAATATTA-AGAATTTTA
1 TTAA-ATTATAGAATTTTA
* *
49294540 TTAAATTATATATTTTTA
1 TTAAATTATAGAATTTTA
49294558 TTAAATTATA
1 TTAAATTATA
49294568 TTTAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTAAATTATAGAATTTTA
Found at i:49294554 original size:31 final size:30
Alignment explanation
Indices: 49294516--49294675 Score: 84
Period size: 31 Copynumber: 5.3 Consensus size: 30
49294506 TCATATAAGA
49294516 ATATATTTAATATTAAGAATTTTATTAAATT
1 ATATATTTAATATT-AGAATTTTATTAAATT
* * * *
49294547 ATATATTT-TTATTA-AATTATATTTAATA
1 ATATATTTAATATTAGAATTTTATTAAATT
* *
49294575 ATAATTATGTTAA-ATTA-TATTTTA-TAGTATT
1 AT-A-TAT-TTAATATTAGAATTTTATTA-AATT
* * *
49294606 ATATATTATGATTTTAGTAATTTAATATT-AA-G
1 ATATATT-TAATATTAG-AATTT--TATTAAATT
*
49294638 A-ATATCTAATATTAAGAATTTTATTAAATT
1 ATATATTTAATATT-AGAATTTTATTAAATT
49294668 ATATATTT
1 ATATATTT
49294676 TTATTAAATT
Statistics
Matches: 93, Mismatches: 20, Indels: 32
0.64 0.14 0.22
Matches are distributed among these distances:
28 18 0.19
29 9 0.10
30 23 0.25
31 34 0.37
32 5 0.05
33 1 0.01
34 2 0.02
35 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (30 bp):
ATATATTTAATATTAGAATTTTATTAAATT
Found at i:49294633 original size:22 final size:21
Alignment explanation
Indices: 49294584--49294635 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
49294574 AATAATTATG
*
49294584 TTAA-ATTATATTTTATAGTA
1 TTAATATTATATTTTATAATA
49294604 TTATATATTATGATTTTAGTAAT-
1 TTA-ATATTAT-ATTTTA-TAATA
49294627 TTAATATTA
1 TTAATATTA
49294636 AGAATATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 1 0.04
22 11 0.41
23 9 0.33
24 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (21 bp):
TTAATATTATATTTTATAATA
Found at i:49294704 original size:121 final size:122
Alignment explanation
Indices: 49294417--49294709 Score: 518
Period size: 122 Copynumber: 2.4 Consensus size: 122
49294407 CAAACTTTAG
*
49294417 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
* * *
49294482 TTATATATTTTGATTTTAGTAAATTCATATAAGAATATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTAATATAAGAATATATCTAATATTAAGAATTTT
49294539 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
*
49294604 TTATATATTATGATTTTAGTAATTTAATATTAAG-A-ATATCTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTAATA-TAAGAATATATCTAATATTAAGAATTTT
49294660 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
49294710 ATATGATTAA
Statistics
Matches: 165, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
121 70 0.42
122 91 0.55
123 4 0.02
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.53
Consensus pattern (122 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
TTATATATTATGATTTTAGTAAATTAATATAAGAATATATCTAATATTAAGAATTTT
Found at i:49294909 original size:44 final size:45
Alignment explanation
Indices: 49294846--49294942 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
49294836 CTATTACACC
*
49294846 TCCATTCCATTCAACCAAAC-ATAAGA-ATACTATTACGCCTATAT
1 TCCATTACATTCAACCAAACAAT-AGATATACTATTACGCCTATAT
* * * *
49294890 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTATAT
49294935 TCCATTAC
1 TCCATTAC
49294943 GCCTCTATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
44 21 0.46
45 25 0.54
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTATAT
Found at i:49294943 original size:16 final size:16
Alignment explanation
Indices: 49294922--49294954 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49294912 TTGATTTGCT
49294922 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
49294938 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
49294954 A
1 A
49294955 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:49295643 original size:77 final size:78
Alignment explanation
Indices: 49295330--49295739 Score: 233
Period size: 78 Copynumber: 5.3 Consensus size: 78
49295320 CTCTTGGAGA
* ** * * *
49295330 ATTATGGATATGATCCGATCCTGACGGCACTTCTATCTTGCGAGAACGATTGTGAATAGGAAACC
1 ATTATGGATAAGATCCGATCCCAACGACACTTCTATCTTGTGAGAACGAGTGTGAATAGG-AACC
*
49295395 -TTTCTTTTGAAGG
65 GTTTCTTTTGAAAG
** * * * * * * * * *
49295408 ACCATGGATAGGATCC-AGTCCTAACGGCACGTCTAACTTGCGAGAACAAATGTGCATAGGAATC
1 ATTATGGATAAGATCCGA-TCCCAACGACACTTCTATCTTGTGAGAACGAGTGTGAATAGGAA-C
* * *
49295472 C-TTTCTCTCGAAGG
64 CGTTTCTTTTGAAAG
** * *** * * * * *
49295486 ATTA-GGAATGGGATTC-ACTCTTGATGGCACTTCTATCTTATAAGAACAAGTGTGAATAGGAAC
1 ATTATGG-ATAAGATCCGA-TCCCAACGACACTTCTATCTTGTGAGAACGAGTGTGAATAGGAAC
** *
49295549 TATTT-TTTTCAACAG
64 CGTTTCTTTTGAA-AG
* * ** *
49295564 ATTATGGATAATATCCGGTCCTTAC-ACACTTCTATCTTGTGAGAATGAGTGTGAATAGGAACCG
1 ATTATGGATAAGATCCGATCCCAACGACACTTCTATCTTGTGAGAACGAGTGTGAATAGGAACCG
**
49295628 TTTCTTTTGGTAG
66 TTTCTTTTGAAAG
* * * * **
49295641 ATTATATG-TAAGATCCGATCCCAACGACACCTCTATCTTGCGAAAACGAGCATGAATAGGAACC
1 ATTAT-GGATAAGATCCGATCCCAACGACACTTCTATCTTGTGAGAACGAGTGTGAATAGGAACC
* *
49295705 GTTTCTCTCGAAAG
65 GTTTCTTTTGAAAG
* *
49295719 ATTATGGATAGGATCAGATCC
1 ATTATGGATAAGATCCGATCC
49295740 TGATGGCACT
Statistics
Matches: 254, Mismatches: 67, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
77 66 0.26
78 186 0.73
79 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (78 bp):
ATTATGGATAAGATCCGATCCCAACGACACTTCTATCTTGTGAGAACGAGTGTGAATAGGAACCG
TTTCTTTTGAAAG
Found at i:49299056 original size:13 final size:15
Alignment explanation
Indices: 49299018--49299068 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
49299008 GAGGAAATAA
*
49299018 TAATAATAGTAGTAG
1 TAATAATAATAGTAG
49299033 TAATAATAATAGT-G
1 TAATAATAATAGTAG
*
49299047 TAAT-ATAATAGTAA
1 TAATAATAATAGTAG
49299061 TAATAATA
1 TAATAATA
49299069 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 8 0.25
14 9 0.28
15 15 0.47
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (15 bp):
TAATAATAATAGTAG
Found at i:49300468 original size:35 final size:35
Alignment explanation
Indices: 49300423--49300489 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
49300413 GGGTGTGTGA
49300423 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
49300458 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGG
49300490 AAAGAGGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.19, C:0.12, G:0.51, T:0.18
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
Found at i:49307194 original size:54 final size:54
Alignment explanation
Indices: 49307111--49307215 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
49307101 GAGTTTTTAT
*
49307111 GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCTACTACTGGTAGTCAAA
1 GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCCACTACTGGTAGTCAAA
* ** *
49307165 GTATACCTGCTGGCTCTCCTACAGGTGTTGAGGAGTCCACTACTGGTAGTC
1 GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCCACTACTGGTAGTC
49307216 GAGTTCAGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (54 bp):
GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCCACTACTGGTAGTCAAA
Found at i:49315422 original size:55 final size:55
Alignment explanation
Indices: 49315333--49315509 Score: 266
Period size: 55 Copynumber: 3.2 Consensus size: 55
49315323 ACATGCTACG
* * * *
49315333 TAACAATTC-ATTTAAACATATAAACAACCGATTCAAAAGAAGCAGCAATCCAATA
1 TAACAA-TCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
* *
49315388 TAACAATCGATTTGAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACA
1 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
* *
49315443 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAATATTCCAACA
1 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
49315498 TAACAATCGATT
1 TAACAATCGATT
49315510 CAAAAGAAGC
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 2 0.02
55 109 0.98
ACGTcount: A:0.50, C:0.19, G:0.07, T:0.24
Consensus pattern (55 bp):
TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
Found at i:49315558 original size:55 final size:55
Alignment explanation
Indices: 49315499--49315622 Score: 169
Period size: 55 Copynumber: 2.3 Consensus size: 55
49315489 ATTCCAACAT
* * * *
49315499 AACAATCGATTCAAA-AGAAGCAGTGTTCTAACATGACAATCAATTTAAACATATA
1 AACAATCGATTCAAACA-AAGCAATATTCTAACATAACAATCAATTTAAACATAAA
* *
49315554 AACAATCGATTCAAACAAAGCAATATTCTAGCATAACAATCGATTTAAACATAAA
1 AACAATCGATTCAAACAAAGCAATATTCTAACATAACAATCAATTTAAACATAAA
*
49315609 AATAATCGATTCAA
1 AACAATCGATTCAA
49315623 TCCAAAATCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 60 0.98
56 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.25
Consensus pattern (55 bp):
AACAATCGATTCAAACAAAGCAATATTCTAACATAACAATCAATTTAAACATAAA
Found at i:49315595 original size:89 final size:89
Alignment explanation
Indices: 49315410--49315598 Score: 290
Period size: 89 Copynumber: 2.1 Consensus size: 89
49315400 TGAACATATA
* *
49315410 AACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCGATTTAAACATATAAACAATCGAT
1 AACAATCGATTCAAAAGAAGCAGTATTCCAACATAACAATCAATTTAAACATATAAACAATCGAT
49315475 TCAAAAGAAACAATATTCCAACAT
66 TCAAAAGAAACAATATTCCAACAT
* * *
49315499 AACAATCGATTCAAAAGAAGCAGTGTTCTAACATGACAATCAATTTAAACATATAAACAATCGAT
1 AACAATCGATTCAAAAGAAGCAGTATTCCAACATAACAATCAATTTAAACATATAAACAATCGAT
* * *
49315564 TCAAACA-AAGCAATATTCTAGCAT
66 TCAAA-AGAAACAATATTCCAACAT
49315588 AACAATCGATT
1 AACAATCGATT
49315599 TAAACATAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 90 0.99
90 1 0.01
ACGTcount: A:0.49, C:0.19, G:0.08, T:0.24
Consensus pattern (89 bp):
AACAATCGATTCAAAAGAAGCAGTATTCCAACATAACAATCAATTTAAACATATAAACAATCGAT
TCAAAAGAAACAATATTCCAACAT
Found at i:49315616 original size:144 final size:144
Alignment explanation
Indices: 49315355--49315622 Score: 385
Period size: 144 Copynumber: 1.9 Consensus size: 144
49315345 TAAACATATA
* * *
49315355 AACAACCGATTCAAAAGAAGCAGCAATCCAATATAACAATCGATTTGAACATATAAACAATCAAT
1 AACAACCGATTCAAAAGAAGCAGCAATCCAACATAACAATCAATTTAAACATATAAACAATCAAT
* *
49315420 TCAAAAGAAGCAGTATTCCAACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAA
66 TCAAAAGAAGCAATATTCCAACATAACAATCGATTTAAACATAAAAACAATCGATTCAAAAGAAA
49315485 CAATATTCCAACAT
131 CAATATTCCAACAT
* *** * * *
49315499 AACAATCGATTCAAAAGAAGCAGTGTTCTAACATGACAATCAATTTAAACATATAAACAATCGAT
1 AACAACCGATTCAAAAGAAGCAGCAATCCAACATAACAATCAATTTAAACATATAAACAATCAAT
* * *
49315564 TCAAACA-AAGCAATATTCTAGCATAACAATCGATTTAAACATAAAAATAATCGATTCAA
66 TCAAA-AGAAGCAATATTCCAACATAACAATCGATTTAAACATAAAAACAATCGATTCAA
49315623 TCCAAAATCA
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
144 107 0.99
145 1 0.01
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.23
Consensus pattern (144 bp):
AACAACCGATTCAAAAGAAGCAGCAATCCAACATAACAATCAATTTAAACATATAAACAATCAAT
TCAAAAGAAGCAATATTCCAACATAACAATCGATTTAAACATAAAAACAATCGATTCAAAAGAAA
CAATATTCCAACAT
Found at i:49316506 original size:5 final size:5
Alignment explanation
Indices: 49316496--49316525 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
49316486 GGGAGAGAAG
49316496 AATTA AATTA AATTA AATTA AATTA AATTA
1 AATTA AATTA AATTA AATTA AATTA AATTA
49316526 TTATTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Done.