Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 25 of 170
Found at i:6685129 original size:42 final size:42
Alignment explanation
Indices: 6685019--6685135 Score: 153
Period size: 42 Copynumber: 2.8 Consensus size: 42
6685009 TCATATAAGT
* * * * **
6685019 TTCCGTTAAACCCTAATGGGTTTCTGATCAGCTCTTTTGAGC
1 TTCCGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTACGAGC
* *
6685061 TTCAGTTTAACCCTTATAGGTTTCCGTTCAGCTCTTACGAGC
1 TTCCGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTACGAGC
*
6685103 TTCCGTTTAACCCTTATGGGTTTCCGTTTAGCT
1 TTCCGTTTAACCCTTATGGGTTTCCGTTCAGCT
6685136 TTCATGAGTT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (42 bp):
TTCCGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTACGAGC
Found at i:6692016 original size:30 final size:30
Alignment explanation
Indices: 6691973--6692430 Score: 578
Period size: 30 Copynumber: 15.2 Consensus size: 30
6691963 GGCAATATAT
*
6691973 ATGTATA--CATATACACATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
6692001 ATGTATATCCATATACAAATCAATTTGACA
1 ATGTATATCCATATACAAATCAATTCGGCA
**
6692031 ATGTATATCTGTATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* ** *
6692061 ATATATAAAACACATACAAATCAATTCGGCA
1 ATGTAT-ATCCATATACAAATCAATTCGGCA
*
6692092 ATGTATATTCATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
6692122 ATTTATATCCATATACAAATCAATTCGACA
1 ATGTATATCCATATACAAATCAATTCGGCA
* ** *
6692152 ATATATAAAACATATACAAATAAATTCGGCA
1 ATGTAT-ATCCATATACAAATCAATTCGGCA
* * *
6692183 AAGTATATCCATATACAAATCAATTCAGTA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
6692213 ATGTATGTCCATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
6692243 ATTTATATCCATATACAAATCAATTTGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
6692273 ATGTATATCCGTATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* * *
6692303 ATATATGTCCATATACAAATCAATTCAGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* **
6692333 ATATATAAAACATATACAAATCAATTCGGCA
1 ATGTAT-ATCCATATACAAATCAATTCGGCA
* *
6692364 ATGTATATCCATAGACAAATCAATTCGACA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
6692394 ATGTATATCCATATACAAATCAATTCGGAA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
6692424 ATATATA
1 ATGTATA
6692431 AAACATATAC
Statistics
Matches: 366, Mismatches: 59, Indels: 8
0.85 0.14 0.02
Matches are distributed among these distances:
28 7 0.02
30 286 0.78
31 73 0.20
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.30
Consensus pattern (30 bp):
ATGTATATCCATATACAAATCAATTCGGCA
Found at i:6692199 original size:121 final size:120
Alignment explanation
Indices: 6691952--6692430 Score: 600
Period size: 121 Copynumber: 3.9 Consensus size: 120
6691942 ATCTAATGCT
** *
6691952 CAAATCAATTTGGCAATATATATGTATACATATACACATCAATTCGGCAATGTATATCCATATAC
1 CAAATCAATTCAGCAATATATA--T-T-CATATACAAATCAATTCGGCAATGTATATCCATATAC
* * ** ** *
6692017 AAATCAATTTGACAATGTATATCTGTATACAAATCAATTCGGCAATATATAAAACACATA
62 AAATCAATTCGACAATGTATAACCATATACAAATCAATTCGGCAATATAT-ATCCATATA
* * *
6692077 CAAATCAATTCGGCAATGTATATTCATATACAAATCAATTCGGCAATTTATATCCATATACAAAT
1 CAAATCAATTCAGCAATATATATTCATATACAAATCAATTCGGCAATGTATATCCATATACAAAT
* * *
6692142 CAATTCGACAATATATAAAACATATACAAATAAATTCGGCAA-AGTATATCCATATA
66 CAATTCGACAATGTAT-AACCATATACAAATCAATTCGGCAATA-TATATCCATATA
* * * * *
6692198 CAAATCAATTCAGTAATGTATGTCCATATACAAATCAATTCGGCAATTTATATCCATATACAAAT
1 CAAATCAATTCAGCAATATATATTCATATACAAATCAATTCGGCAATGTATATCCATATACAAAT
* * * * *
6692263 CAATTTGGCAATGTATATCCGTATACAAATCAATTCGGCAATATATGTCCATATA
66 CAATTCGACAATGTATAACCATATACAAATCAATTCGGCAATATATATCCATATA
** *
6692318 CAAATCAATTCAGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATAGACAAA
1 CAAATCAATTCAGCAATATAT-ATTCATATACAAATCAATTCGGCAATGTATATCCATATACAAA
* *
6692383 TCAATTCGACAATGTATATCCATATACAAATCAATTCGGAAATATATA
65 TCAATTCGACAATGTATAACCATATACAAATCAATTCGGCAATATATA
6692431 AAACATATAC
Statistics
Matches: 312, Mismatches: 38, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
120 51 0.16
121 216 0.69
122 24 0.08
123 1 0.00
125 20 0.06
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.30
Consensus pattern (120 bp):
CAAATCAATTCAGCAATATATATTCATATACAAATCAATTCGGCAATGTATATCCATATACAAAT
CAATTCGACAATGTATAACCATATACAAATCAATTCGGCAATATATATCCATATA
Found at i:6692450 original size:91 final size:91
Alignment explanation
Indices: 6691952--6692441 Score: 696
Period size: 91 Copynumber: 5.4 Consensus size: 91
6691942 ATCTAATGCT
* * *
6691952 CAAATCAATTTGGCAATATATATGTATACATATACACATCAATTCGGCAATGTATATCCATATAC
1 CAAATCAATTCGGCAATATATA---AAACATATACAAATCAATTCGGCAATGTATATCCATATAC
* **
6692017 AAATCAATTTGACAATGTATATCTGTATA
63 AAATCAATTCGACAATGTATATCCATATA
* *
6692046 CAAATCAATTCGGCAATATATAAAACACATACAAATCAATTCGGCAATGTATATTCATATACAAA
1 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
* *
6692111 TCAATTCGGCAATTTATATCCATATA
66 TCAATTCGACAATGTATATCCATATA
* * *
6692137 CAAATCAATTCGACAATATATAAAACATATACAAATAAATTCGGCAAAGTATATCCATATACAAA
1 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
* *
6692202 TCAATTC-AGTAATGTATGTCCATATA
66 TCAATTCGA-CAATGTATATCCATATA
* ** * *
6692228 CAAATCAATTCGGCAATTTAT-ATCCATATACAAATCAATTTGGCAATGTATATCCGTATACAAA
1 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
* * *
6692292 TCAATTCGGCAATATATGTCCATATA
66 TCAATTCGACAATGTATATCCATATA
* *
6692318 CAAATCAATTCAGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATAGACAAA
1 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
6692383 TCAATTCGACAATGTATATCCATATA
66 TCAATTCGACAATGTATATCCATATA
*
6692409 CAAATCAATTCGGAAATATATAAAACATATACA
1 CAAATCAATTCGGCAATATATAAAACATATACA
6692442 TTTGAATTCA
Statistics
Matches: 351, Mismatches: 42, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
90 78 0.22
91 252 0.72
94 21 0.06
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (91 bp):
CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
TCAATTCGACAATGTATATCCATATA
Found at i:6699478 original size:30 final size:30
Alignment explanation
Indices: 6699442--6699950 Score: 658
Period size: 30 Copynumber: 16.9 Consensus size: 30
6699432 TATGTATACG
*
6699442 TATACAAATCAATTCGGCAATGTATATCAA
1 TATACAAATCAATTCGGCAATGTATATCCA
*
6699472 TATACAAATCAATTTGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * **
6699502 TATACAAATCAATGCGGCAATATATAAAACA
1 TATACAAATCAATTCGGCAATGTAT-ATCCA
6699533 TATACAAATCAATTCGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* **
6699563 TATACAAATCAATTCAGCAATGTATGCCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
*
6699593 TATACAAATCAATTCGGCAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* *
6699623 TATACAAATCAATTCCGCAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * * *
6699653 TATACAAATCTATTCCGCAATGTATGTCTA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * * **
6699683 TGTACAAATCAATTCTGCAATATATAAAACA
1 TATACAAATCAATTCGGCAATGTAT-ATCCA
*
6699714 TATACAAATCAATTTGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* *
6699744 TATAGAAATCAATTCAGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * *
6699774 TATATAAATCAATTCGACAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* **
6699804 TATACAAATCAATTCGGCAATATATAAAACA
1 TATACAAATCAATTCGGCAATGTAT-ATCCA
* *
6699835 TATACAAATCAATTCGACAATATATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * *
6699865 TATATAAATCAATTCGACAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
6699895 TATACAAATCAATTCGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* *
6699925 TATACAAATCAATTCGACAATATATA
1 TATACAAATCAATTCGGCAATGTATA
6699951 AAACATATAC
Statistics
Matches: 419, Mismatches: 57, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
30 345 0.82
31 74 0.18
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (30 bp):
TATACAAATCAATTCGGCAATGTATATCCA
Found at i:6699628 original size:151 final size:150
Alignment explanation
Indices: 6699442--6699945 Score: 715
Period size: 151 Copynumber: 3.3 Consensus size: 150
6699432 TATGTATACG
* * *
6699442 TATACAAATCAATTCGGCAATGTATATCAATATACAAATCAATTTGGCAATGTATATCCATATAC
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATGTCCATATAC
* *
6699507 AAATCAATGCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAAT
66 AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATATATATCCATATACAAAT
*
6699572 CAATTCAGCAATGTATGCCCA
131 CAATTC-GCAATGTATGTCCA
* *
6699593 TATACAAATCAATTCGGCAATGTATGTCCATATACAAATCAATTCCGCAATGTATGTCCATATAC
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATGTCCATATAC
* * * ** * * **
6699658 AAATCTATTCCGCAATGTAT--GTCTATGTACAAATCAATTCTGCAATATATAAAACATATACAA
66 AAATCAATTCGGCAATATATAAAAC-ATATACAAATCAATTCGGCAATATAT-ATCCATATACAA
* *
6699721 ATCAATTTGGCAATGTATATCCA
129 ATCAA-TTCGCAATGTATGTCCA
* * * *
6699744 TATAGAAATCAATTCAGCAATGTATATCCATATATAAATCAATTCGACAATGTATGTCCATATAC
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATGTCCATATAC
* *
6699809 AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGACAATATATATCCATATATAAAT
66 AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATATATATCCATATACAAAT
6699874 CAATTCGACAATGTATGTCCA
131 CAATTCG-CAATGTATGTCCA
*
6699895 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGACAAT
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAAT
6699946 ATATAAAACA
Statistics
Matches: 306, Mismatches: 41, Indels: 12
0.85 0.11 0.03
Matches are distributed among these distances:
149 1 0.00
150 26 0.08
151 253 0.83
152 25 0.08
153 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (150 bp):
TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATGTCCATATAC
AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATATATATCCATATACAAAT
CAATTCGCAATGTATGTCCA
Found at i:6699630 original size:121 final size:121
Alignment explanation
Indices: 6699442--6699961 Score: 711
Period size: 121 Copynumber: 4.3 Consensus size: 121
6699432 TATGTATACG
* ** *
6699442 TATACAAATCAATTCGGCAATGTATATCA-ATATACAAATCAATTTGGCAATGTATATCCATATA
1 TATACAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
* * **
6699506 CAAATCAATGCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCA
66 CAAATCAATTCGGCAATGTAT-ATCCATATACAAATCAATTCGGCAATGTATATCCA
* * *** *
6699563 TATACAAATCAATTCAGCAATGTAT-GCCCATATACAAATCAATTCGGCAATGTATGTCCATATA
1 TATACAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
* * * * * *
6699627 CAAATCAATTCCGCAATGTATGTCCATATACAAATCTATTCCGCAATGTATGTCTA
66 CAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
* * *
6699683 TGTACAAATCAATTCTGCAATATATAAAACATATACAAATCAATTTGGCAATGTATATCCATATA
1 TATACAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
* * * * *
6699748 GAAATCAATTCAGCAATGTATATCCATATATAAATCAATTCGACAATGTATGTCCA
66 CAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
* *
6699804 TATACAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGACAATATATATCCATATA
1 TATACAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
* * *
6699869 TAAATCAATTCGACAATGTATGTCCATATACAAATCAATTCGGCAATGTATATCCA
66 CAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
*
6699925 TATACAAATCAATTCGACAATATATAAAACATATACA
1 TATACAAATCAATTCGGCAATATATAAAACATATACA
6699962 TTTGAATTCA
Statistics
Matches: 353, Mismatches: 44, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
120 51 0.14
121 302 0.86
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (121 bp):
TATACAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
CAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
Found at i:6704399 original size:58 final size:61
Alignment explanation
Indices: 6704271--6704404 Score: 152
Period size: 58 Copynumber: 2.2 Consensus size: 61
6704261 TGATTGTCTT
* * * *
6704271 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTCTAGTAATTTAATATATTT
1 AATATTAAATTTAATGTAATATTTATCTTGTAGATAAATATTATAGTAATATAATATATTA
* * *
6704332 AATATTAAATTTAATGTAATATTTATC-T-T-GATAAGTGTTATATTAATAT-A-ATATTA
1 AATATTAAATTTAATGTAATATTTATCTTGTAGATAAATATTATAGTAATATAATATATTA
6704388 AAGTGATTAAATTTAAT
1 AA-T-ATTAAATTTAAT
6704405 CAAATTTAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
56 7 0.11
57 2 0.03
58 27 0.42
59 1 0.02
60 1 0.02
61 26 0.41
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
AATATTAAATTTAATGTAATATTTATCTTGTAGATAAATATTATAGTAATATAATATATTA
Found at i:6706492 original size:53 final size:54
Alignment explanation
Indices: 6706416--6706565 Score: 243
Period size: 53 Copynumber: 2.8 Consensus size: 54
6706406 TTAACTTTTT
* *
6706416 CCATATGATGCAATAA-CTCACCAATTACGGTCTTACATGATATGGTT-TTCTTC
1 CCATATGATGCCATAACCT-ACCAATTACGGTCTTACATGATATGGTTCTTCTTA
6706469 CCATATGATGCCATAACCTACCAATTACGGTCTTACATGATAT-GTTCTTCTTA
1 CCATATGATGCCATAACCTACCAATTACGGTCTTACATGATATGGTTCTTCTTA
*
6706522 CCATATGATGCCATAACCCACCAATTACGGTCTTACATGATATG
1 CCATATGATGCCATAACCTACCAATTACGGTCTTACATGATATG
6706566 ATCTTTTAGT
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
52 3 0.03
53 86 0.95
54 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (54 bp):
CCATATGATGCCATAACCTACCAATTACGGTCTTACATGATATGGTTCTTCTTA
Found at i:6709210 original size:22 final size:22
Alignment explanation
Indices: 6709176--6709554 Score: 499
Period size: 22 Copynumber: 17.2 Consensus size: 22
6709166 AGCAATTATC
** *
6709176 CAACATTCAGACAACATTTAAT
1 CAACATTTGGACAGCATTTAAT
*
6709198 TAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
6709220 CAACAATTGGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAAT
*
6709242 CAACATTTGAACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
*
6709264 CAACATTTGGATAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
6709286 CAACAATTGGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAAT
6709308 CAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
*
6709330 CAACATTTGGACAGCATTCAAT
1 CAACATTTGGACAGCATTTAAT
*
6709352 CAATATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
6709374 CAATAATTT-GACAGCATTAAAT
1 CAA-CATTTGGACAGCATTTAAT
6709396 CAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
6709418 CAACAATTGGACAGCATTCAAT
1 CAACATTTGGACAGCATTTAAT
* * * *
6709440 CAATAATTGGACAACATTTAGT
1 CAACATTTGGACAGCATTTAAT
* * *
6709462 CAACAATTAGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAAT
6709484 CAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* * *
6709506 CAACAATTGGACAGCATTCAAA
1 CAACATTTGGACAGCATTTAAT
*
6709528 CAATATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
6709550 CAACA
1 CAACA
6709555 ATTTTTTACT
Statistics
Matches: 309, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
21 4 0.01
22 301 0.97
23 4 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (22 bp):
CAACATTTGGACAGCATTTAAT
Found at i:6709282 original size:88 final size:88
Alignment explanation
Indices: 6709185--6709557 Score: 575
Period size: 88 Copynumber: 4.2 Consensus size: 88
6709175 CCAACATTCA
* * * * * * *
6709185 GACAACATTTAATTAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAATCAACATTT
1 GACAGCATTTAATCAACAATTGGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACAATT
* * *
6709250 GAACAGCATTTAATCAACATTTG
66 GGACAGCATTCAATCAATATTTG
* *
6709273 GATAGCATTTAATCAACAATTGGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACATTT
1 GACAGCATTTAATCAACAATTGGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACAATT
6709338 GGACAGCATTCAATCAATATTTG
66 GGACAGCATTCAATCAATATTTG
* *
6709361 GACAGCATTTAATCAATAATTTGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACAATT
1 GACAGCATTTAATCAACAATTGGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACAATT
*
6709426 GGACAGCATTCAATCAATAATTG
66 GGACAGCATTCAATCAATATTTG
* * *
6709449 GACAACATTTAGTCAACAATTAGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACAATT
1 GACAGCATTTAATCAACAATTGGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACAATT
*
6709514 GGACAGCATTCAAACAATATTTG
66 GGACAGCATTCAATCAATATTTG
6709537 GACAGCATTTAATCAACAATT
1 GACAGCATTTAATCAACAATT
6709558 TTTTACTTCA
Statistics
Matches: 262, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 262 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (88 bp):
GACAGCATTTAATCAACAATTGGACAGCATTAAATCAACATTTGGACAGCATTTAATCAACAATT
GGACAGCATTCAATCAATATTTG
Found at i:6709744 original size:2 final size:2
Alignment explanation
Indices: 6709737--6709774 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6709727 TAATCATACC
6709737 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6709775 CTTTGCATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6714988 original size:26 final size:26
Alignment explanation
Indices: 6714959--6715021 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
6714949 CTACCTACAA
*
6714959 CAGTTTTAGAATATCATAACATATAT
1 CAGTTTCAGAATATCATAACATATAT
* *
6714985 CAGTTTCAGAATATCATAGCATGTAT
1 CAGTTTCAGAATATCATAACATATAT
*
6715011 GAGTTTCAGAA
1 CAGTTTCAGAA
6715022 CACTTATAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (26 bp):
CAGTTTCAGAATATCATAACATATAT
Found at i:6715911 original size:23 final size:24
Alignment explanation
Indices: 6715867--6715911 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
6715857 AAAATCCTAC
*
6715867 CCATCCAGCCTCTACACACCATCT
1 CCATCCAACCTCTACACACCATCT
*
6715891 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACACCAT
6715912 GTGGGGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.27, C:0.51, G:0.02, T:0.20
Consensus pattern (24 bp):
CCATCCAACCTCTACACACCATCT
Found at i:6719426 original size:12 final size:12
Alignment explanation
Indices: 6719409--6719438 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
6719399 GCTACACAGG
6719409 CGTGTGGTTGGC
1 CGTGTGGTTGGC
6719421 CGTGTGGTTGGC
1 CGTGTGGTTGGC
6719433 CGTGTG
1 CGTGTG
6719439 CGAGACATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (12 bp):
CGTGTGGTTGGC
Found at i:6720104 original size:13 final size:14
Alignment explanation
Indices: 6720083--6720126 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 14
6720073 AGGGTAGGAT
*
6720083 TCTGTATATCT-TA
1 TCTGCATATCTATA
6720096 TCTGCATATCTATA
1 TCTGCATATCTATA
*
6720110 TCTGC-TATCTGTA
1 TCTGCATATCTATA
6720123 TCTG
1 TCTG
6720127 ACTGTATGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.48
Consensus pattern (14 bp):
TCTGCATATCTATA
Found at i:6721918 original size:18 final size:18
Alignment explanation
Indices: 6721895--6721931 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
6721885 CCTCGTCACT
6721895 TGCTCGTATATGATTTTC
1 TGCTCGTATATGATTTTC
6721913 TGCTCGTATATGATTTTC
1 TGCTCGTATATGATTTTC
6721931 T
1 T
6721932 ACTAATTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51
Consensus pattern (18 bp):
TGCTCGTATATGATTTTC
Found at i:6731957 original size:16 final size:15
Alignment explanation
Indices: 6731938--6731994 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 15
6731928 TAATAAAAGA
6731938 AAAAAATAATGCTAAT
1 AAAAAATAATG-TAAT
*
6731954 AAAAGATACATGTATAT
1 AAAAAATA-ATGTA-AT
*
6731971 AATAAATAATG-AAT
1 AAAAAATAATGTAAT
6731985 AAAAAA-AATG
1 AAAAAATAATG
6731995 AGCGGCCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
13 4 0.11
14 7 0.20
15 1 0.03
16 12 0.34
17 11 0.31
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.25
Consensus pattern (15 bp):
AAAAAATAATGTAAT
Found at i:6734856 original size:50 final size:50
Alignment explanation
Indices: 6734744--6734858 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 50
6734734 CACACTACAA
* * * * *
6734744 CTCTTATAAGCGTCCTGATATTTGGCTCTCACAAGCTTCCCGTTATTTGG
1 CTCTTATAAGCTTCCTGATAATTGACTCTCACAAGCTTCCCGATAATTGG
* **
6734794 CTCTCA-AGAGCTTCCTGATAATTGACTCTCACAAGCTTCTTGATAATTGG
1 CTCTTATA-AGCTTCCTGATAATTGACTCTCACAAGCTTCCCGATAATTGG
6734844 CTCTTATAAGCTTCC
1 CTCTTATAAGCTTCC
6734859 CAATTAATGG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.02
50 52 0.96
51 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.37
Consensus pattern (50 bp):
CTCTTATAAGCTTCCTGATAATTGACTCTCACAAGCTTCCCGATAATTGG
Found at i:6734870 original size:75 final size:74
Alignment explanation
Indices: 6734759--6734958 Score: 192
Period size: 75 Copynumber: 2.7 Consensus size: 74
6734749 ATAAGCGTCC
* * * * * *
6734759 TGATATTTGGCTCTCACAAGCTTCCCGTTATTTGGCTC-TCAAGAGCTTCCTGATAATTGACTCT
1 TGATATTTGGCTCTTATAAGCTTCCCATTATATGGCTCTTC-AGAGCTTCCCGAT-ATTGACTCG
*
6734823 CACAAGCTTCT
64 CACAAGCTTCG
* *
6734834 TGATAATTGGCTCTTATAAGCTTCCCAATTA-ATGGCTCTTCAGAGCTTCCCGATATTGGCTCGC
1 TGATATTTGGCTCTTATAAGCTTCCC-ATTATATGGCTCTTCAGAGCTTCCCGATATTGACTCGC
**
6734898 ATGAGCTTCG
65 ACAAGCTTCG
* * * * *
6734908 CGATATTTGGCTCTTTTGAGCTTCCCGTT-TATGGCTCGT-ATGAGCTTCCCG
1 TGATATTTGGCTCTTATAAGCTTCCCATTATATGGCTCTTCA-GAGCTTCCCG
6734959 TTACATGGCT
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
72 1 0.01
73 20 0.19
74 37 0.36
75 41 0.39
76 5 0.05
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (74 bp):
TGATATTTGGCTCTTATAAGCTTCCCATTATATGGCTCTTCAGAGCTTCCCGATATTGACTCGCA
CAAGCTTCG
Found at i:6734905 original size:49 final size:50
Alignment explanation
Indices: 6734852--6735002 Score: 125
Period size: 49 Copynumber: 3.1 Consensus size: 50
6734842 GGCTCTTATA
*
6734852 AGCTTCCCAATTAATGGCTCTTCAGAGCTTCCCGATAT-TGGCTCGCATG
1 AGCTTCCCAATTAATGGCTCTTAAGAGCTTCCCGATATATGGCTCGCATG
* ** * *
6734901 AGCTTCGCGATATT--TGGCTCTTTTGAGCTTCCCG-TTTATGGCTCGTATG
1 AGCTTC-CCA-ATTAATGGCTCTTAAGAGCTTCCCGATATATGGCTCGCATG
* ** * *
6734950 AGCTTCCC-GTTACATGGCTCGAAAGAGCTTCCCGATTACAT-GCTCGTATG
1 AGCTTCCCAATTA-ATGGCTCTTAAGAGCTTCCCGA-TATATGGCTCGCATG
6735000 AGC
1 AGC
6735003 ATACTTGTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
46 2 0.02
48 3 0.04
49 56 0.69
50 14 0.17
51 6 0.07
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (50 bp):
AGCTTCCCAATTAATGGCTCTTAAGAGCTTCCCGATATATGGCTCGCATG
Found at i:6734927 original size:25 final size:24
Alignment explanation
Indices: 6734744--6734985 Score: 119
Period size: 25 Copynumber: 9.8 Consensus size: 24
6734734 CACACTACAA
* * *
6734744 CTCTTATAAGCGTCCTGATATTTGG
1 CTCTTATGAGCTTCCCGATA-TTGG
* ** *
6734769 CTCTCACAAGCTTCCCGTTATTTGG
1 CTCTTATGAGCTTCCCGATA-TTGG
* * * *
6734794 CTCTCAAGAGCTTCCTGATAATTGA
1 CTCTTATGAGCTTCCCGAT-ATTGG
* ** **
6734819 CTCTCACAAGCTTCTTGATAATTGG
1 CTCTTATGAGCTTCCCGAT-ATTGG
* * *
6734844 CTCTTATAAGCTTCCCAATTAATGG
1 CTCTTATGAGCTTCCCGA-TATTGG
6734869 CTCTTCA-GAGCTTCCCGATATTGG
1 CTCTT-ATGAGCTTCCCGATATTGG
** *
6734893 CTCGCATGAGCTTCGCGATATTTGG
1 CTCTTATGAGCTTCCCGATA-TTGG
* *
6734918 CTCTTTTGAGCTTCCCG-TTTATGG
1 CTCTTATGAGCTTCCCGATAT-TGG
* * *
6734942 CTCGTATGAGCTTCCCGTTACATGG
1 CTCTTATGAGCTTCCCGATA-TTGG
** *
6734967 CTCGAAAGAGCTTCCCGAT
1 CTCTTATGAGCTTCCCGAT
6734986 TACATGCTCG
Statistics
Matches: 171, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
23 2 0.01
24 39 0.23
25 127 0.74
26 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (24 bp):
CTCTTATGAGCTTCCCGATATTGG
Found at i:6734968 original size:74 final size:74
Alignment explanation
Indices: 6734835--6734985 Score: 171
Period size: 74 Copynumber: 2.0 Consensus size: 74
6734825 CAAGCTTCTT
* * * *
6734835 GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCTTCAGAGCTTCCCGATATTGGCTCGCAT
1 GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCGTCAGAGCTTCCCGATAATGGCTCGAAA
*
6734900 GAGCTTCGC
66 GAGCTTCCC
* * * * * *
6734909 GATATTTGGCTCTTTTGAGCTTCCC-GTTTATGGCTCGT-ATGAGCTTCCCGTTACATGGCTCGA
1 GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCGTCA-GAGCTTCCCGATA-ATGGCTCGA
6734972 AAGAGCTTCCC
64 AAGAGCTTCCC
6734983 GAT
1 GAT
6734986 TACATGCTCG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
72 1 0.02
73 22 0.34
74 41 0.64
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (74 bp):
GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCGTCAGAGCTTCCCGATAATGGCTCGAAA
GAGCTTCCC
Found at i:6735002 original size:25 final size:25
Alignment explanation
Indices: 6734841--6735002 Score: 118
Period size: 25 Copynumber: 6.6 Consensus size: 25
6734831 TCTTGATAAT
* * *
6734841 TGGCTCTTATAAGCTTCCCAATTA-A
1 TGGCTCGTATGAGCTTCCC-GTTACA
* * *
6734866 TGGCTCTTCA-GAGCTTCCCGATA-T
1 TGGCTCGT-ATGAGCTTCCCGTTACA
* * * **
6734890 TGGCTCGCATGAGCTTCGCGATATT
1 TGGCTCGTATGAGCTTCCCGTTACA
* * *
6734915 TGGCTCTTTTGAGCTTCCCGTT-TA
1 TGGCTCGTATGAGCTTCCCGTTACA
6734939 TGGCTCGTATGAGCTTCCCGTTACA
1 TGGCTCGTATGAGCTTCCCGTTACA
* *
6734964 TGGCTCGAAAGAGCTTCCCGATTACA
1 TGGCTCGTATGAGCTTCCCG-TTACA
6734990 T-GCTCGTATGAGC
1 TGGCTCGTATGAGC
6735003 ATACTTGTAT
Statistics
Matches: 112, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
23 1 0.01
24 41 0.37
25 63 0.56
26 7 0.06
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (25 bp):
TGGCTCGTATGAGCTTCCCGTTACA
Found at i:6735978 original size:43 final size:43
Alignment explanation
Indices: 6735929--6736018 Score: 162
Period size: 43 Copynumber: 2.1 Consensus size: 43
6735919 CACAGACGCA
*
6735929 TGTCTCAACCGTGTGTGACACACGGCCATGTGACATGGTCGTG
1 TGTCTCAACCGTGTGTGACACACGGCCATGTGACACGGTCGTG
*
6735972 TGTCTCAATCGTGTGTGACACACGGCCATGTGACACGGTCGTG
1 TGTCTCAACCGTGTGTGACACACGGCCATGTGACACGGTCGTG
6736015 TGTC
1 TGTC
6736019 CCTTGTATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.27
Consensus pattern (43 bp):
TGTCTCAACCGTGTGTGACACACGGCCATGTGACACGGTCGTG
Found at i:6736203 original size:83 final size:82
Alignment explanation
Indices: 6736059--6736211 Score: 209
Period size: 83 Copynumber: 1.9 Consensus size: 82
6736049 AGTATACTCA
* * * * *
6736059 AAATTTTTCACACGGCCTAGCACCCAGGCGTGTGGTTTGGCCGTGTGTCCCTTGCATCTTATAAA
1 AAATTATTCACACGGCCTAGCACACAGGCGTGTGGCTTGGCCGTGTGACCCTTGCACCTTATAAA
6736124 TTGCAAAACTGAATGTTC
66 -TGCAAAACTGAATGTTC
* * *
6736142 AAATTATTCACACGGCCTGGCACACGGGCGTGTGGCTTGGCCGTGTGA-CCTCTGCACCTTATTA
1 AAATTATTCACACGGCCTAGCACACAGGCGTGTGGCTTGGCCGTGTGACCCT-TGCACCTTATAA
6736206 ATGCAA
65 ATGCAA
6736212 GTCAGTATGC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
82 8 0.13
83 53 0.87
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (82 bp):
AAATTATTCACACGGCCTAGCACACAGGCGTGTGGCTTGGCCGTGTGACCCTTGCACCTTATAAA
TGCAAAACTGAATGTTC
Found at i:6743559 original size:81 final size:82
Alignment explanation
Indices: 6743453--6743803 Score: 429
Period size: 81 Copynumber: 4.3 Consensus size: 82
6743443 GACAGGATTG
* * * * * *
6743453 AATCTCGAAACAAAATTATTTAATTAAATCTTATTTGGAAATAAAATCAAAATCGAATAAAATAT
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
6743518 GTTAAATGGCAGGAAT-
66 GTTAAATGGCAGGAATA
* *
6743534 AATCCCGGAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATCT
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
* * *
6743599 ATT-AATGACGGGAATA
66 GTTAAATGGCAGGAATA
* * * * *
6743615 AATTCCGAAACAGAATTATTCAATTAATTCTCATCTGGAAACAAAATAAAAATCAAATCAAATAT
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
*
6743680 GTTAAATGGCAAGAATA
66 GTTAAATGGCAGGAATA
* * * * * *
6743697 AATCCTGAAATAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATTAAAAT-GAAACAAAATC
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCG-AATAAAATA
** *
6743761 TGTTAAACAGCGGGAATA
65 TGTTAAATGGCAGGAATA
*
6743779 AATCCCGAAACAGAATTATTTAATT
1 AATCCCGAAACAGAATTATTCAATT
6743804 TTAACTTTTT
Statistics
Matches: 228, Mismatches: 39, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
80 10 0.04
81 119 0.52
82 99 0.43
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (82 bp):
AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
GTTAAATGGCAGGAATA
Found at i:6743680 original size:162 final size:164
Alignment explanation
Indices: 6743453--6743803 Score: 483
Period size: 162 Copynumber: 2.2 Consensus size: 164
6743443 GACAGGATTG
* * * * * * *
6743453 AATCTCGAAACAAAATTATTTAATTAAATCTTATTTGGAAATAAAATCAAAATCGAATAAAATAT
1 AATCCCGAAACAGAATTATTTAATTAAATCTCATCTGGAAACAAAATAAAAATCAAATAAAATAT
* *
6743518 GTTAAATGGCAGGAAT-AATCCCGGAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATC
66 GTTAAATGGCAAGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATC
* **
6743582 AAAATCG-AATAAAATCTATTAATGA-CGGGAATA
131 AAAAT-GAAACAAAATCTATTAAACAGCGGGAATA
* * * *
6743615 AATTCCGAAACAGAATTATTCAATTAATTCTCATCTGGAAACAAAATAAAAATCAAATCAAATAT
1 AATCCCGAAACAGAATTATTTAATTAAATCTCATCTGGAAACAAAATAAAAATCAAATAAAATAT
* * * *
6743680 GTTAAATGGCAAGAATAAATCCTGAAATAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATT
66 GTTAAATGGCAAGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATC
*
6743745 AAAATGAAACAAAATCTGTTAAACAGCGGGAATA
131 AAAATGAAACAAAATCTATTAAACAGCGGGAATA
6743779 AATCCCGAAACAGAATTATTTAATT
1 AATCCCGAAACAGAATTATTTAATT
6743804 TTAACTTTTT
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
162 70 0.43
163 62 0.38
164 31 0.19
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (164 bp):
AATCCCGAAACAGAATTATTTAATTAAATCTCATCTGGAAACAAAATAAAAATCAAATAAAATAT
GTTAAATGGCAAGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATC
AAAATGAAACAAAATCTATTAAACAGCGGGAATA
Found at i:6744060 original size:50 final size:50
Alignment explanation
Indices: 6743931--6744062 Score: 164
Period size: 50 Copynumber: 2.7 Consensus size: 50
6743921 GCGAACAAAT
*
6743931 ATAAATATTTATATTTATATT-AAATA-CAATATCTAAACAAATAATATAA
1 ATAAATATTTATATTTATATTAAAATATC-ATATCTAAACAAAAAATATAA
* * * *
6743980 ACAAATATTTATATTTATGTAAAAACATCATATCTAAACAAAACAA-ATTAA
1 ATAAATATTTATATTTATATTAAAATATCATATCTAAACAAAA-AATA-TAA
6744031 ATAAATATTTATATTTAT-TTAAAATATCATAT
1 ATAAATATTTATATTTATATTAAAATATCATAT
6744063 TTGAAAACAA
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
49 18 0.25
50 30 0.42
51 23 0.32
ACGTcount: A:0.53, C:0.08, G:0.01, T:0.39
Consensus pattern (50 bp):
ATAAATATTTATATTTATATTAAAATATCATATCTAAACAAAAAATATAA
Found at i:6745140 original size:5 final size:5
Alignment explanation
Indices: 6745130--6745157 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
6745120 TAAAAAAAGG
6745130 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
6745158 CTGTGGGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:6745553 original size:74 final size:74
Alignment explanation
Indices: 6745432--6745583 Score: 304
Period size: 74 Copynumber: 2.1 Consensus size: 74
6745422 TTGATCAATG
6745432 TGTAATCAAACAAGGGGAAAAAGAAAGAAATATGTATTATTACTCAAAATTAGCTAAAAGTATCA
1 TGTAATCAAACAAGGGGAAAAAGAAAGAAATATGTATTATTACTCAAAATTAGCTAAAAGTATCA
6745497 TGGAGCCCT
66 TGGAGCCCT
6745506 TGTAATCAAACAAGGGGAAAAAGAAAGAAATATGTATTATTACTCAAAATTAGCTAAAAGTATCA
1 TGTAATCAAACAAGGGGAAAAAGAAAGAAATATGTATTATTACTCAAAATTAGCTAAAAGTATCA
6745571 TGGAGCCCT
66 TGGAGCCCT
6745580 TGTA
1 TGTA
6745584 TTAGGAGTTA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 78 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (74 bp):
TGTAATCAAACAAGGGGAAAAAGAAAGAAATATGTATTATTACTCAAAATTAGCTAAAAGTATCA
TGGAGCCCT
Found at i:6746941 original size:5 final size:5
Alignment explanation
Indices: 6746931--6746959 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
6746921 TATATTCATA
6746931 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
6746960 AATTTGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:6748920 original size:24 final size:22
Alignment explanation
Indices: 6748891--6748934 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
6748881 AAAGAGCGCA
*
6748891 AGCAGCAACCACGCACAAAAAAAC
1 AGCAGCAA-AACGCA-AAAAAAAC
6748915 AGCAGCAAAACGCAAAAAAA
1 AGCAGCAAAACGCAAAAAAA
6748935 GGCCAGAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 5 0.26
24 8 0.42
ACGTcount: A:0.59, C:0.27, G:0.14, T:0.00
Consensus pattern (22 bp):
AGCAGCAAAACGCAAAAAAAAC
Found at i:6766357 original size:5 final size:6
Alignment explanation
Indices: 6766339--6766364 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6766329 AGGGTTTAGC
6766339 TTCTTT TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TT
6766365 TTGTATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:6767606 original size:40 final size:40
Alignment explanation
Indices: 6767524--6767606 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
6767514 AAAAATTATA
* * * ** *
6767524 TTTAATACAATAAAATATTTATTATATTTTTTTGAGTTTT
1 TTTAATAAAATAAAACATTGATTATATTTTGGTGAGTATT
6767564 TTTAATAAAATAAAACATTGATTATATTTATGGT-AGTATT
1 TTTAATAAAATAAAACATTGATTATATTT-TGGTGAGTATT
6767604 TTT
1 TTT
6767607 TAGTATTAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
40 34 0.94
41 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.53
Consensus pattern (40 bp):
TTTAATAAAATAAAACATTGATTATATTTTGGTGAGTATT
Found at i:6768383 original size:18 final size:18
Alignment explanation
Indices: 6768360--6768402 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
6768350 ACCATAACAA
* *
6768360 TAGAAATAAGATATTGAG
1 TAGAAATAACAAATTGAG
*
6768378 TAGAAATTACAAATTGAG
1 TAGAAATAACAAATTGAG
6768396 -AGAAATA
1 TAGAAATA
6768403 TCCAATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (18 bp):
TAGAAATAACAAATTGAG
Found at i:6769500 original size:290 final size:280
Alignment explanation
Indices: 6768870--6769566 Score: 1018
Period size: 290 Copynumber: 2.4 Consensus size: 280
6768860 TAAAGATATA
* *
6768870 ATAAAAGGTCTCAGACATCCAAGGAAGGATAAAAGCAGCACAAGCTCTCAAGCCCGGCGAAAAGC
1 ATAAAAGGTCTCAGACATCCAAGGAAGGA-AGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
* *
6768935 GAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAAC
65 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAAC
** *
6769000 CCATACACATGAAATATATTATCATTTGACTCAATTTTATGAATACCGTTTATCAATGGAACTGA
130 CCATACACAACAAATATATTATCATTTGACTCAATTTTAAGAATACCGTTTATCAATGGAACTGA
* * *
6769065 AAAAATAGGAAAAATATACAACCAGATTTCTGAGAAAATAATTGGATTTTCAAGCGCAAATAATG
195 AAAAAAAGGAAAAATATACAACCAGATTTCTGAGAAAATAACTGGATTTTCAAGCACAAATAATG
*
6769130 AAAAACAACTATATACAAGTC
260 AAAAACAACCATATACAAGTC
6769151 ATAAAAGGTCTCAGACATCCAAGGAAGGAATGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
1 ATAAAAGGTCTCAGACATCCAAGGAAGGAA-GAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
* ***
6769216 GAAAGCTCTTAGTCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTTGGA-TTATCATCATAAAC
65 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAAC
* * * * * *
6769280 CTATACACAACAAATATATTTTCCTTTGACTGAATTTTAAGAATATCGTTTATCAATTGAACTGA
130 CCATACACAACAAATATATTATCATTTGACTCAATTTTAAGAATACCGTTTATCAATGGAACTG-
* * * * *
6769345 ATAAAAAAAAAAGGGGAAAAAATGTACAACCAGATTTCTGAGGAAGTGACTGGGTTTTCAAGCAC
194 ----AAAAAAAA--GG-AAAAATATACAACCAGATTTCTGAGAAAATAACTGGATTTTCAAGCAC
* *
6769410 AAATAGTGAAAACAACAACCATATAGAAGTC
252 AAATAATG-AAA-AACAACCATATACAAGTC
6769441 ATAAAAGGTCTCAGACATCCAAGGAAGGAAGGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
1 ATAAAAGGTCTCAGACATCCAAGGAAGGAA-GAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
6769506 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCAT
65 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCAT
6769567 CGACTTTATA
Statistics
Matches: 372, Mismatches: 32, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
280 70 0.19
281 106 0.28
285 7 0.02
287 2 0.01
288 48 0.13
289 3 0.01
290 126 0.34
291 10 0.03
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.22
Consensus pattern (280 bp):
ATAAAAGGTCTCAGACATCCAAGGAAGGAAGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGCG
AAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAACC
CATACACAACAAATATATTATCATTTGACTCAATTTTAAGAATACCGTTTATCAATGGAACTGAA
AAAAAAGGAAAAATATACAACCAGATTTCTGAGAAAATAACTGGATTTTCAAGCACAAATAATGA
AAAACAACCATATACAAGTC
Found at i:6775177 original size:56 final size:51
Alignment explanation
Indices: 6774917--6775213 Score: 302
Period size: 50 Copynumber: 5.8 Consensus size: 51
6774907 GATAATAACA
* *** * *
6774917 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGGTGTTTC-ATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCT-CGG
* * * ** * * *
6774966 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCT-TATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
*
6775016 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTC-ATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCGATCTCGG
* *
6775066 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCG-TCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
*
6775116 TGCCAATGCCATGTCCCAGACATGGTTTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--GATCTC--GG
* *
6775171 ATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6775214 TTACCCAAAT
Statistics
Matches: 208, Mismatches: 27, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
49 38 0.18
50 123 0.59
51 1 0.00
52 1 0.00
53 4 0.02
55 2 0.01
56 39 0.19
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.29
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
Found at i:6780020 original size:152 final size:152
Alignment explanation
Indices: 6779744--6780048 Score: 592
Period size: 152 Copynumber: 2.0 Consensus size: 152
6779734 TCATCAAATA
*
6779744 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGGAGTCTCTGTTGAAGAGGATG
1 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGAAGTCTCTGTTGAAGAGGATG
6779809 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
66 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
6779874 AATAAAATCTATTGAATGCTTT
131 AATAAAATCTATTGAATGCTTT
*
6779896 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGAAGTCTTTGTTGAAGAGGATG
1 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGAAGTCTCTGTTGAAGAGGATG
6779961 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
66 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
6780026 AATAAAATCTATTGAATGCTTT
131 AATAAAATCTATTGAATGCTTT
6780048 A
1 A
6780049 AAGAGAACTT
Statistics
Matches: 151, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 151 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (152 bp):
ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGAAGTCTCTGTTGAAGAGGATG
GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
AATAAAATCTATTGAATGCTTT
Found at i:6786174 original size:31 final size:29
Alignment explanation
Indices: 6786099--6786176 Score: 75
Period size: 31 Copynumber: 2.6 Consensus size: 29
6786089 AATTTGCAAA
* *
6786099 TTTAGTCCTTATACTTTTATTTGATCAAT
1 TTTAGTCCATATACTTTTAATTGATCAAT
* * * *
6786128 TTCAGTCCATGTACTTTTCAAATTGCTCACT
1 TTTAGTCCATATACTTTT--AATTGATCAAT
*
6786159 TTTAGTCCCTATACTTTT
1 TTTAGTCCATATACTTTT
6786177 GTAATTATGA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 15 0.39
31 23 0.61
ACGTcount: A:0.22, C:0.21, G:0.08, T:0.50
Consensus pattern (29 bp):
TTTAGTCCATATACTTTTAATTGATCAAT
Found at i:6790889 original size:24 final size:24
Alignment explanation
Indices: 6790855--6790906 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
6790845 TTTCTAGAAG
* * *
6790855 ATTTAGTATTTATGAGTATAATTT
1 ATTTAGCATTTATGAGCATAATAT
*
6790879 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
6790903 ATTT
1 ATTT
6790907 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:6793861 original size:21 final size:22
Alignment explanation
Indices: 6793835--6793904 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 22
6793825 TAATGTAATT
6793835 ATTATTTTTTATATATATGTA-
1 ATTATTTTTTATATATATGTAG
*
6793856 ATTATTTTTTATAATTTATATATATAG
1 ATTA-TTTTT-T-A--TATATATGTAG
6793883 ATTTATTTTTTATATATATGTA
1 A-TTATTTTTTATATATATGTA
6793905 CATGTAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
21 4 0.10
22 5 0.12
23 10 0.25
24 1 0.03
25 1 0.03
26 10 0.25
27 6 0.15
28 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
ATTATTTTTTATATATATGTAG
Found at i:6793867 original size:28 final size:28
Alignment explanation
Indices: 6793842--6793896 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
6793832 ATTATTATTT
6793842 TTTATATATAT-GTAATTATTTTTTATAA
1 TTTATATATATAG-AATTATTTTTTATAA
*
6793870 TTTATATATATAGATTTATTTTTTATA
1 TTTATATATATAGAATTATTTTTTATA
6793897 TATATGTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 24 0.96
29 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (28 bp):
TTTATATATATAGAATTATTTTTTATAA
Found at i:6794064 original size:9 final size:10
Alignment explanation
Indices: 6794030--6794064 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
6794020 ATATATTTTA
*
6794030 ATTTATATAT
1 ATTTTTATAT
6794040 ATTTTTATAT
1 ATTTTTATAT
*
6794050 ATTTTTATTT
1 ATTTTTATAT
6794060 ATTTT
1 ATTTT
6794065 CATAAATGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:6794321 original size:27 final size:26
Alignment explanation
Indices: 6794288--6794340 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
6794278 CATTGTCATT
*
6794288 GTTTATTTTTTTATGTATATTAGTTTC
1 GTTTATTTATTTATGTATATTA-TTTC
* *
6794315 GTTTATTTATTTGTTTATATTATTTC
1 GTTTATTTATTTATGTATATTATTTC
6794341 TATGTCATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.19, C:0.04, G:0.09, T:0.68
Consensus pattern (26 bp):
GTTTATTTATTTATGTATATTATTTC
Found at i:6794337 original size:13 final size:14
Alignment explanation
Indices: 6794303--6794340 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
6794293 TTTTTTTATG
6794303 TATATTAGTTTCGTT
1 TATATTA-TTTCGTT
6794318 TAT-TTATTT-GTT
1 TATATTATTTCGTT
6794330 TATATTATTTC
1 TATATTATTTC
6794341 TATGTCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.66
Consensus pattern (14 bp):
TATATTATTTCGTT
Found at i:6801442 original size:49 final size:50
Alignment explanation
Indices: 6801350--6801447 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 50
6801340 ATCTATTTAT
* * * * *
6801350 AGGTTGAAAAAACCTTATTCTAATAAATGTCAAATAGATGAAGTGTAGTA
1 AGGTTGAAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGTA
6801400 AGGTTG-AAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGT
1 AGGTTGAAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGT
6801448 TCTATATTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 37 0.86
50 6 0.14
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (50 bp):
AGGTTGAAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGTA
Found at i:6801572 original size:29 final size:29
Alignment explanation
Indices: 6801539--6801597 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
6801529 TCCACCTTGA
* *
6801539 CACGAATTATCAACAAACAAGTTCTTCAC
1 CACGAACTATCAACAAACAAGTTCTCCAC
* * *
6801568 CACGAACTCTCAACGAATAAGTTCTCCAC
1 CACGAACTATCAACAAACAAGTTCTCCAC
6801597 C
1 C
6801598 TCTTCCACGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.37, C:0.32, G:0.08, T:0.22
Consensus pattern (29 bp):
CACGAACTATCAACAAACAAGTTCTCCAC
Found at i:6802744 original size:9 final size:9
Alignment explanation
Indices: 6802730--6802819 Score: 83
Period size: 9 Copynumber: 9.9 Consensus size: 9
6802720 CGAACTTTTT
6802730 GGGTAATTC
1 GGGTAATTC
6802739 GGGTAATTTTC
1 GGGTAA--TTC
*
6802750 GAGTAATTC
1 GGGTAATTC
**
6802759 GATTAATTC
1 GGGTAATTC
*
6802768 GGTTAATTC
1 GGGTAATTC
* *
6802777 AGTTAATTC
1 GGGTAATTC
*
6802786 GGTTAATTC
1 GGGTAATTC
*
6802795 GGTTAA-TC
1 GGGTAATTC
6802803 GGGTAATTC
1 GGGTAATTC
6802812 GGGTAATT
1 GGGTAATT
6802820 TTTAACAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.10
9 57 0.79
11 8 0.11
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (9 bp):
GGGTAATTC
Found at i:6805238 original size:3 final size:3
Alignment explanation
Indices: 6805230--6805311 Score: 128
Period size: 3 Copynumber: 27.3 Consensus size: 3
6805220 AGAATACATG
*
6805230 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
6805278 ATA ATA ATG ATA TTG ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6805312 CAACATCAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6806727 original size:18 final size:18
Alignment explanation
Indices: 6806704--6806750 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
6806694 TCTTACTATC
*
6806704 ATTATTATTATTTTATTT
1 ATTATTATTATTCTATTT
6806722 ATTATTATTA-TCTATTT
1 ATTATTATTATTCTATTT
6806739 ATGTATT-TTATT
1 AT-TATTATTATT
6806751 ACAAATTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (18 bp):
ATTATTATTATTCTATTT
Found at i:6806730 original size:21 final size:21
Alignment explanation
Indices: 6806704--6806751 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
6806694 TCTTACTATC
*
6806704 ATTATTAT-TATTTTATTTATT
1 ATTATTATCTA-TTTATGTATT
6806725 ATTATTATCTATTTATGTATT
1 ATTATTATCTATTTATGTATT
6806746 -TTATTA
1 ATTATTA
6806752 CAAATTGCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 6 0.24
21 17 0.68
22 2 0.08
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTATTATCTATTTATGTATT
Found at i:6807541 original size:43 final size:43
Alignment explanation
Indices: 6807442--6807547 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
6807432 ACAAACACCC
* * *
6807442 CTAAAGATCATGGTCTTTAGCGGCGTTTGTTGGGAAAGCGCTG
1 CTAAAGATCAGGGTCCTTAGCGGCGTTTGTTGCGAAAGCGCTG
* * * *
6807485 CTATAGACCAGGGTCGTTAGCGGCGTTT-TTGCGACAAGTGCTG
1 CTAAAGATCAGGGTCCTTAGCGGCGTTTGTTGCGA-AAGCGCTG
*
6807528 CTAAAGATTAGGGTCCTTAG
1 CTAAAGATCAGGGTCCTTAG
6807548 GCGCTTCTCC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 5 0.10
43 47 0.90
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (43 bp):
CTAAAGATCAGGGTCCTTAGCGGCGTTTGTTGCGAAAGCGCTG
Found at i:6807656 original size:86 final size:85
Alignment explanation
Indices: 6807547--6807746 Score: 238
Period size: 86 Copynumber: 2.3 Consensus size: 85
6807537 AGGGTCCTTA
* * * *
6807547 GGCGCTTCTCCCTAAAACGCCGCTAACGACCCTGATCTATAGCGGCGCTTCGACCACAAACTCCA
1 GGCGCTT-TCCCCAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTCGACCACAAACGCCA
6807612 CTAAAGAACCTAATCTTTAGC
65 CTAAAGAACCTAATCTTTAGC
* * *** * *
6807633 GGCGCTTTCCCCACAAACGCCGCTAAAGACCATGATCTTTAGGGGCGCTTTTTCTACAAACGCCG
1 GGCGCTTTCCCCA-AAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTCGACCACAAACGCCA
*
6807698 CTAAAGAACCTTATCTTTAGC
65 CTAAAGAACCTAATCTTTAGC
** *
6807719 GGCGCTTTTACCAAAGACGCCACTAAAG
1 GGCGCTTTCCCCAAA-ACGCCGCTAAAG
6807747 GCCAACACCT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 7 0.07
86 90 0.93
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (85 bp):
GGCGCTTTCCCCAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTCGACCACAAACGCCAC
TAAAGAACCTAATCTTTAGC
Found at i:6807727 original size:43 final size:43
Alignment explanation
Indices: 6807561--6807746 Score: 205
Period size: 43 Copynumber: 4.3 Consensus size: 43
6807551 CTTCTCCCTA
* * * **
6807561 AAACGCCGCTAACGACCCTGATCTATAGCGGCGCTTCGACCAC
1 AAACGCCGCTAAAGAACCTGATCTTTAGCGGCGCTTTTACCAC
* * * **
6807604 AAACTCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCAC
1 AAACGCCGCTAAAGAACCTGATCTTTAGCGGCGCTTTTACCAC
* * *
6807647 AAACGCCGCTAAAG-ACCATGATCTTTAGGGGCGCTTTTTCTAC
1 AAACGCCGCTAAAGAACC-TGATCTTTAGCGGCGCTTTTACCAC
*
6807690 AAACGCCGCTAAAGAACCTTATCTTTAGCGGCGCTTTTACCA-
1 AAACGCCGCTAAAGAACCTGATCTTTAGCGGCGCTTTTACCAC
*
6807732 AAGACGCCACTAAAG
1 AA-ACGCCGCTAAAG
6807747 GCCAACACCT
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
42 5 0.04
43 111 0.93
44 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACCTGATCTTTAGCGGCGCTTTTACCAC
Found at i:6807771 original size:86 final size:86
Alignment explanation
Indices: 6807602--6807771 Score: 207
Period size: 86 Copynumber: 2.0 Consensus size: 86
6807592 CGCTTCGACC
* * * **
6807602 ACAAACTCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAAAGACCATG
1 ACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCACAAACGCCACTAAAGACCAAC
* *
6807667 ATCTTTAGGGGCGCTTTTTCT
66 ACCTTTAGGGGAGCTTTTTCT
* * * *
6807688 ACAAACGCCGCTAAAGAACCTTATCTTTAGCGGCGCTTTTACCA-AAGACGCCACTAAAGGCCAA
1 ACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCACAA-ACGCCACTAAAGACCAA
* *
6807752 CACCTTTAGTGGAGTTTTTT
65 CACCTTTAGGGGAGCTTTTT
6807772 TTTTGAAAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
85 2 0.03
86 68 0.97
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (86 bp):
ACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCACAAACGCCACTAAAGACCAAC
ACCTTTAGGGGAGCTTTTTCT
Found at i:6808117 original size:21 final size:21
Alignment explanation
Indices: 6808091--6808182 Score: 94
Period size: 21 Copynumber: 4.4 Consensus size: 21
6808081 TTTGACGCTG
6808091 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
6808112 CTCTGCTTCCCTCGCTACAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
6808133 CTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
6808154 TTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
6808175 ATCTGCTT
1 CTCTGCTT
6808183 TAAGCTGCTG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.05, C:0.42, G:0.17, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:6808243 original size:66 final size:66
Alignment explanation
Indices: 6808158--6808318 Score: 209
Period size: 66 Copynumber: 2.4 Consensus size: 66
6808148 TGCCGCTTCT
* *
6808158 GCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTTGAACC
1 GCTTCTCTCGCTGCTGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTTGAACC
6808221 TCA
64 TCA
* * *
6808224 GCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTC
1 GCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTC
6808289 A
66 A
* * * *
6808290 GCTTCTCTCGATGTTGCCTCCGCTTTAAG
1 GCTTCTCTCGCTGCTGCATCTGCTTTAAG
6808319 TTGTGTAATT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 78 0.94
67 4 0.05
ACGTcount: A:0.13, C:0.28, G:0.19, T:0.40
Consensus pattern (66 bp):
GCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTC
A
Found at i:6812499 original size:31 final size:31
Alignment explanation
Indices: 6812456--6812522 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
6812446 AAATGTCGAT
*
6812456 ATCATTCTCGGGCCCTTTCTCTCCAGGGATA
1 ATCATTCCCGGGCCCTTTCTCTCCAGGGATA
6812487 ATCATTCCCGGGCCCTTTCTCTCCAGGGATA
1 ATCATTCCCGGGCCCTTTCTCTCCAGGGATA
6812518 ATCAT
1 ATCAT
6812523 AGATAAGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.31
Consensus pattern (31 bp):
ATCATTCCCGGGCCCTTTCTCTCCAGGGATA
Found at i:6813787 original size:9 final size:9
Alignment explanation
Indices: 6813770--6813900 Score: 70
Period size: 9 Copynumber: 15.9 Consensus size: 9
6813760 TAAGTATAAT
*
6813770 TAAGCTATG
1 TAAGTTATG
6813779 TAAGTTATG
1 TAAGTTATG
6813788 T-A-TTATG
1 TAAGTTATG
6813795 TAAGTTAT-
1 TAAGTTATG
*
6813803 TTA-TTATG
1 TAAGTTATG
* *
6813811 AAAATTATG
1 TAAGTTATG
*
6813820 TAAGTT-TT
1 TAAGTTATG
*
6813828 TTA-TTATG
1 TAAGTTATG
*
6813836 -AA--AAT-
1 TAAGTTATG
* *
6813841 TATGCTATG
1 TAAGTTATG
6813850 TAAGTTATG
1 TAAGTTATG
** *
6813859 TAAGTCGTA
1 TAAGTTATG
6813868 TAAGTTATG
1 TAAGTTATG
6813877 T-A-TTATG
1 TAAGTTATG
6813884 TAAGTTATG
1 TAAGTTATG
6813893 TAAGTTAT
1 TAAGTTAT
6813901 TTATTATGCA
Statistics
Matches: 90, Mismatches: 21, Indels: 22
0.68 0.16 0.17
Matches are distributed among these distances:
6 3 0.03
7 19 0.21
8 13 0.14
9 55 0.61
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:6813796 original size:16 final size:16
Alignment explanation
Indices: 6813775--6813894 Score: 78
Period size: 16 Copynumber: 7.9 Consensus size: 16
6813765 ATAATTAAGC
6813775 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
6813791 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
6813807 TATG-AA---A---AT
1 TATGTAAGTTATGTAT
* *
6813816 TATGTAAGTTTTTTAT
1 TATGTAAGTTATGTAT
* * *
6813832 TATGAAAATTATG--C
1 TATGTAAGTTATGTAT
6813846 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
** *
6813864 CGTATAAGTTATGTAT
1 TATGTAAGTTATGTAT
6813880 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
6813895 AGTTATTTAT
Statistics
Matches: 77, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
12 1 0.01
14 11 0.14
15 2 0.03
16 43 0.56
17 1 0.01
18 11 0.14
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:6813817 original size:25 final size:25
Alignment explanation
Indices: 6813789--6813844 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
6813779 TAAGTTATGT
6813789 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
*
6813814 ATTATGTAAGTTTTTTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
6813839 ATTATG
1 ATTATG
6813845 CTATGTAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (25 bp):
ATTATGTAAGTTATTTATTATGAAA
Found at i:6813884 original size:25 final size:25
Alignment explanation
Indices: 6813854--6813908 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
6813844 GCTATGTAAG
*
6813854 TTATGTAAGTCGTATAAGTTATGTA
1 TTATGTAAGTCATATAAGTTATGTA
* * *
6813879 TTATGTAAGTTATGTAAGTTATTTA
1 TTATGTAAGTCATATAAGTTATGTA
6813904 TTATG
1 TTATG
6813909 CAAATACATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.02, G:0.18, T:0.49
Consensus pattern (25 bp):
TTATGTAAGTCATATAAGTTATGTA
Found at i:6813954 original size:9 final size:9
Alignment explanation
Indices: 6813940--6813978 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
6813930 ATTAAAAAAA
6813940 ATGTAAGTT
1 ATGTAAGTT
6813949 ATGTAAG-T
1 ATGTAAGTT
6813957 -TGTAAGTT
1 ATGTAAGTT
6813965 ATGTAAGTT
1 ATGTAAGTT
6813974 ATGTA
1 ATGTA
6813979 TAATATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 6 0.21
8 2 0.07
9 20 0.71
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:6813962 original size:16 final size:16
Alignment explanation
Indices: 6813941--6813973 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6813931 TTAAAAAAAA
6813941 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
6813957 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
6813973 T
1 T
6813974 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:6815270 original size:3 final size:3
Alignment explanation
Indices: 6815255--6815298 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
6815245 AATAGTAAGG
*
6815255 ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6815299 CTAAACAACA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6817053 original size:44 final size:43
Alignment explanation
Indices: 6816918--6817285 Score: 258
Period size: 44 Copynumber: 8.6 Consensus size: 43
6816908 CGATCTACTG
* * * * *
6816918 CTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCA
1 CTGTAA-CTCAGGGAGATAAGATCTCTGT-CTTCAATCTGCTCCA
* ** * *
6816962 CTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCG
1 CTGTAAC-TCAGGGAGATAAGATCTCTGTCTTCAATCTGCTCCA
*
6817005 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAA-CTCAGGGAGATAAGATCTCTGTCTTCAATCTGCTCCA
* * * *
6817049 CTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTTAGTCTGTTCCA
1 CTGTAA-CTCAGGGAGATAAGATCT---CTGTCTTCAATCTGCTCCA
* * * * *
6817095 CTGTAATCTCAGGGAAATAAGA-C-CTG-GTGCGATCTGCTCTA
1 CTGTAA-CTCAGGGAGATAAGATCTCTGTCTTCAATCTGCTCCA
* * *
6817136 CTGTAACTTCA-GG-GATAAGAT-T-T-TATTTAATCCGCTCCA
1 CTGTAAC-TCAGGGAGATAAGATCTCTGTCTTCAATCTGCTCCA
* ** * *
6817175 -TGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCG
1 CTGTAAC-TCAGGGAGATAAGATCTCTGTCTTCAATCTGCTCCA
*
6817217 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAA-CTCAGGGAGATAAGATCTCTGTCTTCAATCTGCTCCA
*
6817261 CTGTGACCTCAGGGAGATAAGATCT
1 CTGT-AACTCAGGGAGATAAGATCT
6817286 GAAATTCTTT
Statistics
Matches: 252, Mismatches: 52, Indels: 40
0.73 0.15 0.12
Matches are distributed among these distances:
38 10 0.04
39 18 0.07
40 10 0.04
41 19 0.08
42 11 0.04
43 50 0.20
44 99 0.39
45 2 0.01
46 32 0.13
47 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (43 bp):
CTGTAACTCAGGGAGATAAGATCTCTGTCTTCAATCTGCTCCA
Found at i:6817209 original size:212 final size:215
Alignment explanation
Indices: 6816868--6817330 Score: 769
Period size: 212 Copynumber: 2.2 Consensus size: 215
6816858 TGTTGTGTTC
* * *
6816868 AGTCTATTCCACTG-CATCTTCAGGGGAATAAGACCTGATGCGATCTACTGCTGTAACCTCAGAG
1 AGTCTGTTCCACTGTAATC-TCAGGGGAATAAGACCTGATGCGATCTACTACTGTAACCTCAGAG
6816932 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGAT
65 AGATAAGAT-CTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGAT
6816997 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGG
129 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGG
6817062 GAGATAAGATCTGAAATTCTTT
194 GAGATAAGATCTGAAATTCTTT
* * * *
6817084 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAG-
1 AGTCTGTTCCACTGTAATCTCAGGGGAATAAGACCTGATGCGATCT--ACTACTGTAACCTCAGA
6817148 G-GATAAGAT-TTTA-TTTAATCCGCTCCA-TGTAACTTCAGGGAGATAGGATAGTGTCTTCGAT
64 GAGATAAGATCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGAT
*
6817209 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTGACCTCAGG
129 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGG
6817274 GAGATAAGATCTGAAATTCTTT
194 GAGATAAGATCTGAAATTCTTT
6817296 -GTCTGTTCCACTGTAATCTCAGGGGAATAAGACCT
1 AGTCTGTTCCACTGTAATCTCAGGGGAATAAGACCT
6817331 TTTATAATGA
Statistics
Matches: 235, Mismatches: 9, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
211 34 0.14
212 120 0.51
213 14 0.06
214 4 0.02
216 46 0.20
217 4 0.02
218 13 0.06
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (215 bp):
AGTCTGTTCCACTGTAATCTCAGGGGAATAAGACCTGATGCGATCTACTACTGTAACCTCAGAGA
GATAAGATCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCT
GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
GATAAGATCTGAAATTCTTT
Found at i:6829785 original size:3 final size:3
Alignment explanation
Indices: 6829765--6829807 Score: 68
Period size: 3 Copynumber: 14.0 Consensus size: 3
6829755 AATAGTAAGG
*
6829765 ATA ATA GTA ATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6829808 CTAAACAACA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6831190 original size:9 final size:9
Alignment explanation
Indices: 6831176--6831218 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
6831166 ATTAATTAAG
6831176 TTATGTAAT
1 TTATGTAAT
6831185 TTATGTATAT
1 TTATGTA-AT
* *
6831195 TAAT-TAAG
1 TTATGTAAT
6831203 TTATGTAAT
1 TTATGTAAT
6831212 TTATGTA
1 TTATGTA
6831219 TAATATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 4 0.14
9 19 0.68
10 5 0.18
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (9 bp):
TTATGTAAT
Found at i:6831198 original size:31 final size:31
Alignment explanation
Indices: 6831143--6831539 Score: 278
Period size: 31 Copynumber: 13.8 Consensus size: 31
6831133 GCCTGCAACA
* *
6831143 TATGTAATTTACGTATAATATTAATTAATTAAGT
1 TATGTAATTTATGTATAATATTAA-T--GTAAGT
6831177 TATGTAATTTATG--T-ATATTAAT-TAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
6831204 TATGTAATTTATGTATAATATTAATGTAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
*
6831235 TATGT-ATAATATGTATAATATTAATGTAAGT
1 TATGTAAT-TTATGTATAATATTAATGTAAGT
* * *
6831266 TATGTGA-GT-TG--TAA-GTT-ATGTAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
* *
6831291 TATGTACA---A--TATTA-ATTAA-CTAAGT
1 TATGTA-ATTTATGTATAATATTAATGTAAGT
6831316 T-TGTAATTTATGTATAATATTAATGTAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
*
6831346 TATGT-ATAATATGTATAATATTAATGTAAGT
1 TATGTAAT-TTATGTATAATATTAATGTAAGT
* * *
6831377 TATGTGA-GT-TG--TAA-GTT-ATGTAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
* *
6831402 TATGTACA---A--TATTA-ATTAA-CTAAGT
1 TATGTA-ATTTATGTATAATATTAATGTAAGT
6831427 TATGTAATTTATGTATAATATTAATGTAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
* * *
6831458 TATGT-A--TA-ATATTA-ATTCAT-TAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
6831483 TATGTAATTTATGTATAATATTAATGTAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGT
* *
6831514 TATGTAATCTATGTATATTAATTAAT
1 TATGTAATTTATGTATAAT-ATTAAT
6831540 TAAATGATAT
Statistics
Matches: 296, Mismatches: 27, Indels: 82
0.73 0.07 0.20
Matches are distributed among these distances:
23 1 0.00
24 5 0.02
25 61 0.21
26 15 0.05
27 29 0.10
28 8 0.03
29 18 0.06
30 32 0.11
31 106 0.36
32 9 0.03
34 12 0.04
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.47
Consensus pattern (31 bp):
TATGTAATTTATGTATAATATTAATGTAAGT
Found at i:6831230 original size:22 final size:24
Alignment explanation
Indices: 6831177--6831246 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 24
6831167 TTAATTAAGT
*
6831177 TATGTAATTTATGTATATTAATTAA
1 TATGTAATTTATGTATAAT-ATTAA
6831202 GTTATGTAATTTATGTATAATATT-A
1 --TATGTAATTTATGTATAATATTAA
*
6831227 -ATGTAAGTTATGTATAATAT
1 TATGTAATTTATGTATAATAT
6831247 GTATAATATT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
22 19 0.46
25 1 0.02
26 3 0.07
27 18 0.44
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (24 bp):
TATGTAATTTATGTATAATATTAA
Found at i:6831270 original size:9 final size:9
Alignment explanation
Indices: 6831258--6831520 Score: 72
Period size: 9 Copynumber: 28.7 Consensus size: 9
6831248 TATAATATTA
6831258 ATGTAAGTT
1 ATGTAAGTT
*
6831267 ATGTGAG-T
1 ATGTAAGTT
6831275 -TGTAAGTT
1 ATGTAAGTT
6831283 ATGTAAGTT
1 ATGTAAGTT
*
6831292 ATGTACA-AT
1 ATGTA-AGTT
6831301 AT-TAA-TT
1 ATGTAAGTT
**
6831308 AACTAAGTT
1 ATGTAAGTT
*
6831317 -TGTAATTT
1 ATGTAAGTT
*
6831325 ATGTATAATATT
1 ATG--TAA-GTT
6831337 AATGTAAGTT
1 -ATGTAAGTT
*
6831347 ATGTATA-AT
1 ATGTA-AGTT
*
6831356 ATGTATAATATT
1 ATG--TAA-GTT
6831368 AATGTAAGTT
1 -ATGTAAGTT
*
6831378 ATGTGAG-T
1 ATGTAAGTT
6831386 -TGTAAGTT
1 ATGTAAGTT
6831394 ATGTAAGTT
1 ATGTAAGTT
*
6831403 ATGTACA-AT
1 ATGTA-AGTT
6831412 AT-TAA-TT
1 ATGTAAGTT
**
6831419 AACTAAGTT
1 ATGTAAGTT
*
6831428 ATGTAATTT
1 ATGTAAGTT
*
6831437 ATGTATAATATT
1 ATG--TAA-GTT
6831449 AATGTAAGTT
1 -ATGTAAGTT
*
6831459 ATGTATA-AT
1 ATGTA-AGTT
6831468 AT-TAA-TT
1 ATGTAAGTT
6831475 CAT-TAAGTT
1 -ATGTAAGTT
*
6831484 ATGTAATTT
1 ATGTAAGTT
*
6831493 ATGTATAATATT
1 ATG--TAA-GTT
6831505 AATGTAAGTT
1 -ATGTAAGTT
6831515 ATGTAA
1 ATGTAA
6831521 TCTATGTATA
Statistics
Matches: 193, Mismatches: 28, Indels: 66
0.67 0.10 0.23
Matches are distributed among these distances:
7 18 0.09
8 28 0.15
9 92 0.48
10 13 0.07
11 23 0.12
12 7 0.04
13 12 0.06
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:6831280 original size:16 final size:16
Alignment explanation
Indices: 6831259--6831291 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6831249 ATAATATTAA
*
6831259 TGTAAGTTATGTGAGT
1 TGTAAGTTATGTAAGT
6831275 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
6831291 T
1 T
6831292 ATGTACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:6831315 original size:34 final size:34
Alignment explanation
Indices: 6831277--6831451 Score: 117
Period size: 34 Copynumber: 4.9 Consensus size: 34
6831267 ATGTGAGTTG
*
6831277 TAAGTTATGTAAGTTATGTACAATATTAATTAAC
1 TAAGTTATGTAAGTTATGTATAATATTAATTAAC
* *
6831311 TAAGTT-TGTAATTTATGTATAATATTAA-T--G
1 TAAGTTATGTAAGTTATGTATAATATTAATTAAC
* *
6831341 TAAGTTATGTATA-ATATGTATAATATTAATGTAAGT
1 TAAGTTATGTA-AGTTATGTATAATATTAAT-TAA-C
* *
6831377 TATGTGAGTTGTAAGTTATGTAAGTTATGTACAATATTAATTAAC
1 TA----AG-T-T-A--TG--TAAGTTATGTATAATATTAATTAAC
*
6831422 TAAGTTATGTAATTTATGTATAATATTAAT
1 TAAGTTATGTAAGTTATGTATAATATTAAT
6831452 GTAAGTTATG
Statistics
Matches: 110, Mismatches: 12, Indels: 38
0.69 0.08 0.24
Matches are distributed among these distances:
30 6 0.05
31 19 0.17
32 2 0.02
33 21 0.19
34 25 0.23
36 3 0.03
38 1 0.01
39 1 0.01
40 3 0.03
41 3 0.03
42 1 0.01
43 1 0.01
45 3 0.03
46 4 0.04
47 17 0.15
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (34 bp):
TAAGTTATGTAAGTTATGTATAATATTAATTAAC
Found at i:6831391 original size:16 final size:16
Alignment explanation
Indices: 6831370--6831402 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6831360 ATAATATTAA
*
6831370 TGTAAGTTATGTGAGT
1 TGTAAGTTATGTAAGT
6831386 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
6831402 T
1 T
6831403 ATGTACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:6831443 original size:81 final size:77
Alignment explanation
Indices: 6831311--6831462 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 77
6831301 ATTAATTAAC
* * *
6831311 TAAGTTTGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTATAATATTAATGTAAG
1 TAAGTTTGTAAGTTATGTACAATATTAATCTAAGTTATGTATAATATGTATAATATTAATGTAAG
6831376 TTATGTGAGTTG
66 TTATGTGAGTTG
*
6831388 TAAGTTATGTAAGTTATGTACAATATTAATTAACTAAGTTATGTA-ATTTATGTATAATATTAAT
1 TAAGTT-TGTAAGTTATGTACAATATTAA-T--CTAAGTTATGTATA-ATATGTATAATATTAAT
6831452 GTAAGTTATGT
61 GTAAGTTATGT
6831463 ATAATATTAA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
77 6 0.09
78 20 0.30
79 1 0.02
80 1 0.02
81 38 0.58
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.46
Consensus pattern (77 bp):
TAAGTTTGTAAGTTATGTACAATATTAATCTAAGTTATGTATAATATGTATAATATTAATGTAAG
TTATGTGAGTTG
Found at i:6831454 original size:56 final size:56
Alignment explanation
Indices: 6831143--6831519 Score: 370
Period size: 56 Copynumber: 6.7 Consensus size: 56
6831133 GCCTGCAACA
* * *
6831143 TATGTAATTTACGTATAATATTAATTAATTAAGTTATGTA-ATTTATGTATATTAATTAAGT
1 TATGTAATTTATGTATAATATTAA-T--GTAAGTTATGTATA-ATATGTA-ATTAA-TAAGT
6831204 TATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGT-A-TAAT-A-T
1 TATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTAATTAATAAGT
* ** *
6831256 TAATGTAAGTTATGTGAGTTGTAAGTT-ATGTAAGTTATGTACAATAT-TAATTAACTAAGT
1 T-ATGTAATTTATGT-A-TAAT-A-TTAATGTAAGTTATGTATAATATGTAATTAA-TAAGT
6831316 T-TGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGT-A-TAAT-A-T
1 TATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTAATTAATAAGT
* ** *
6831367 TAATGTAAGTTATGTGAGTTGTAAGTT-ATGTAAGTTATGTACAATAT-TAATTAACTAAGT
1 T-ATGTAATTTATGT-A-TAAT-A-TTAATGTAAGTTATGTATAATATGTAATTAA-TAAGT
*
6831427 TATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATAT-TAATTCATTAAGT
1 TATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTAATT-AATAAGT
6831483 TATGTAATTTATGTATAATATTAATGTAAGTTATGTA
1 TATGTAATTTATGTATAATATTAATGTAAGTTATGTA
6831520 ATCTATGTAT
Statistics
Matches: 270, Mismatches: 20, Indels: 57
0.78 0.06 0.16
Matches are distributed among these distances:
51 2 0.01
52 3 0.01
53 25 0.09
54 8 0.03
55 32 0.12
56 113 0.42
57 14 0.05
58 30 0.11
59 15 0.06
60 5 0.02
61 23 0.09
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (56 bp):
TATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTAATTAATAAGT
Found at i:6831480 original size:111 final size:112
Alignment explanation
Indices: 6831193--6831469 Score: 538
Period size: 111 Copynumber: 2.5 Consensus size: 112
6831183 ATTTATGTAT
*
6831193 ATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTATAATATTA
1 ATTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTATAATATTA
6831258 ATGTAAGTTATGTGAGTTGTAAGTTATGTAAGTTATGTACAATATTA
66 ATGTAAGTTATGTGAGTTGTAAGTTATGTAAGTTATGTACAATATTA
6831305 ATTAACTAAGTT-TGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTATAATATTA
1 ATTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTATAATATTA
6831369 ATGTAAGTTATGTGAGTTGTAAGTTATGTAAGTTATGTACAATATTA
66 ATGTAAGTTATGTGAGTTGTAAGTTATGTAAGTTATGTACAATATTA
6831416 ATTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATAT
1 ATTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATAT
6831470 TAATTCATTA
Statistics
Matches: 163, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
111 111 0.68
112 52 0.32
ACGTcount: A:0.39, C:0.01, G:0.14, T:0.45
Consensus pattern (112 bp):
ATTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATGTATAATATTA
ATGTAAGTTATGTGAGTTGTAAGTTATGTAAGTTATGTACAATATTA
Found at i:6831488 original size:25 final size:22
Alignment explanation
Indices: 6831428--6831473 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
6831418 TAACTAAGTT
*
6831428 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
6831450 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
6831472 AT
1 AT
6831474 TCATTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:6831801 original size:11 final size:11
Alignment explanation
Indices: 6831787--6831823 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
6831777 TTGATACTAC
6831787 ATTATAATGAA
1 ATTATAATGAA
6831798 ATTATAATGAA
1 ATTATAATGAA
*
6831809 ATTATAATCAA
1 ATTATAATGAA
6831820 ATTA
1 ATTA
6831824 GAAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (11 bp):
ATTATAATGAA
Found at i:6833155 original size:8 final size:10
Alignment explanation
Indices: 6833132--6833168 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
6833122 TAATAACTAT
6833132 ATATATATCC
1 ATATATATCC
*
6833142 ATATATATTC
1 ATATATATCC
6833152 ATATATATCC
1 ATATATATCC
6833162 ATATATA
1 ATATATA
6833169 AGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:6833740 original size:27 final size:27
Alignment explanation
Indices: 6833708--6833759 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
6833698 TCTTACTTTT
* *
6833708 AAATAATTAATTACCAATTTATTTAAC
1 AAATAAATAATTACCAACTTATTTAAC
*
6833735 AAATAAATAATTACTAACTTATTTA
1 AAATAAATAATTACCAACTTATTTA
6833760 TTTGTTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (27 bp):
AAATAAATAATTACCAACTTATTTAAC
Found at i:6833848 original size:8 final size:10
Alignment explanation
Indices: 6833825--6833861 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
6833815 ATTAATAACT
6833825 ATATATATCC
1 ATATATATCC
*
6833835 ATATATATTC
1 ATATATATCC
6833845 ATATATATCC
1 ATATATATCC
6833855 ATATATA
1 ATATATA
6833862 AGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:6835728 original size:15 final size:15
Alignment explanation
Indices: 6835708--6835745 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
6835698 ACCGTTGAAA
6835708 CCCTAAATCT-TAAAC
1 CCCTAAATCTCT-AAC
*
6835723 CCCTAAACCTCTAAC
1 CCCTAAATCTCTAAC
6835738 CCCTAAAT
1 CCCTAAAT
6835746 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 19 0.95
16 1 0.05
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (15 bp):
CCCTAAATCTCTAAC
Found at i:6836379 original size:41 final size:41
Alignment explanation
Indices: 6836334--6836572 Score: 200
Period size: 41 Copynumber: 5.8 Consensus size: 41
6836324 AAAGCCAGAG
* *
6836334 CATTAGGGGCGCTCAGATAAAAACGCCACTAAAGATACTAA
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCAA
* * * *
6836375 CATTAGCGGCGCTTAGAAAAAAACGCCGCTAAAG--GCCAGA
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCA-A
* * * * *
6836415 GAATTAGTGGCGCTCAGATAAAAATGCCACTAAAGATACGAG
1 -CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCAA
* * * * *
6836457 CATTAGCGACGCTTAGAGAAAAACGCCGCTAAAG--GCCAGA
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCA-A
* * *
6836497 GCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGAT-CGGAC
1 -CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATAC-CAA
* * *
6836539 CATTAGCGGCGCTAAAATAAAAACGCCGCTAAAG
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAG
6836573 GTTTAAAAAT
Statistics
Matches: 153, Mismatches: 36, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
39 4 0.03
40 1 0.01
41 144 0.94
42 1 0.01
43 3 0.02
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (41 bp):
CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCAA
Found at i:6836429 original size:82 final size:82
Alignment explanation
Indices: 6836312--6836573 Score: 393
Period size: 82 Copynumber: 3.2 Consensus size: 82
6836302 GCTTACCTAT
* * * *
6836312 AAAATGCCGCTAAAAGCCAGAGCATTAGGGGCGCTCAGATAAAAACGCCACTAAAGATACTAACA
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
6836377 TTAGCGGCGCTTAGAAA
66 TTAGCGGCGCTTAGAAA
* * *
6836394 AAAACGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAAAATGCCACTAAAGATACGAGCA
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
* *
6836459 TTAGCGACGCTTAGAGA
66 TTAGCGGCGCTTAGAAA
*
6836476 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGAT-CGGACC
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATAC-GAAC
*
6836540 ATTAGCGGCGC-TAAAATA
65 ATTAGCGGCGCTTAGAA-A
6836558 AAAACGCCGCTAAAGG
1 AAAACGCCGCTAAAGG
6836574 TTTAAAAATC
Statistics
Matches: 163, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 4 0.02
82 159 0.98
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (82 bp):
AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
TTAGCGGCGCTTAGAAA
Found at i:6842350 original size:17 final size:19
Alignment explanation
Indices: 6842328--6842372 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
6842318 CTAAAATAGT
6842328 AACAAAATTA-ACAATAA-
1 AACAAAATTATACAATAAC
6842345 AACAAAAGTTATACAATAAC
1 AACAAAA-TTATACAATAAC
6842365 AACAAAAT
1 AACAAAAT
6842373 AGTAGCAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.28
18 3 0.12
19 8 0.32
20 7 0.28
ACGTcount: A:0.67, C:0.13, G:0.02, T:0.18
Consensus pattern (19 bp):
AACAAAATTATACAATAAC
Found at i:6842929 original size:26 final size:25
Alignment explanation
Indices: 6842889--6842953 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
6842879 TGTTAAGATT
*
6842889 TATTTTCTTTC-TTTTATTACT-TTTC
1 TATTTT-TTTCTTTTTACT-CTCTTTC
6842914 ATATTTTTTTCTTTTTACTCTCTTTC
1 -TATTTTTTTCTTTTTACTCTCTTTC
6842940 -ATTTTTTTCTTTTT
1 TATTTTTTTCTTTTT
6842954 TTTTTTTACT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 14 0.39
25 6 0.17
26 16 0.44
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (25 bp):
TATTTTTTTCTTTTTACTCTCTTTC
Found at i:6845306 original size:31 final size:32
Alignment explanation
Indices: 6845264--6845326 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
6845254 AGATAATTTT
6845264 AAAGAGTTTTTATTAGGATTCAATTACTCTTA
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTA
6845296 AAAGAG-TTTTATTAGGATTCAATTACTCTTA
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTA
6845327 TAATTTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.43
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTTA
Found at i:6847653 original size:29 final size:29
Alignment explanation
Indices: 6847611--6847694 Score: 132
Period size: 29 Copynumber: 2.9 Consensus size: 29
6847601 AATTGGACTC
*
6847611 GATACGAGAGAGGCCCAAAATCTCCTCAT
1 GATACGAGAGAGGCCCAAAAACTCCTCAT
*
6847640 GATACGTGAGAGGCCCAAAAACTCCTCAT
1 GATACGAGAGAGGCCCAAAAACTCCTCAT
* *
6847669 GATACGGGAAAGGCCCAAAAACTCCT
1 GATACGAGAGAGGCCCAAAAACTCCT
6847695 TATGTTAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.36, C:0.27, G:0.21, T:0.15
Consensus pattern (29 bp):
GATACGAGAGAGGCCCAAAAACTCCTCAT
Found at i:6854761 original size:27 final size:29
Alignment explanation
Indices: 6854725--6854800 Score: 93
Period size: 30 Copynumber: 2.7 Consensus size: 29
6854715 GGAAAAAGAT
6854725 AGAGAAAGGGAT-AGG-GAAAGAGAAAGG
1 AGAGAAAGGGATAAGGAGAAAGAGAAAGG
*
6854752 AGAGATAGGGATAAGGAGAAAGAGAAAGAG
1 AGAGAAAGGGATAAGGAGAAAGAGAAAG-G
* * *
6854782 AAAGAGAGAGATAAGGAGA
1 AGAGAAAGGGATAAGGAGA
6854801 GGAGAGAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 11 0.26
28 3 0.07
29 11 0.26
30 17 0.40
ACGTcount: A:0.54, C:0.00, G:0.41, T:0.05
Consensus pattern (29 bp):
AGAGAAAGGGATAAGGAGAAAGAGAAAGG
Found at i:6854807 original size:78 final size:76
Alignment explanation
Indices: 6854725--6854867 Score: 169
Period size: 78 Copynumber: 1.9 Consensus size: 76
6854715 GGAAAAAGAT
* * * * *
6854725 AGAGAAAGGGATAGGGAAAGAGAAAGGAGAGATAGGGATAAGGAGAAAGAGAAAGAGAAAGAGAG
1 AGAGAAAGGGAAAAGGAAAGAGAAAGGAGAGAAAGGCAGAAGGAG-AAG-GAAAGAGAAAGAGAG
6854790 AGATAAGGAGAGG
64 AGATAAGGAGAGG
* * * * * *
6854803 AGAGAGAGGGAAAAGGAGAGAGAGAGGAGGGAAAGGCAGAAGGAGAAGGAAAGGGAGAGAGAGAG
1 AGAGAAAGGGAAAAGGAAAGAGAAAGGAGAGAAAGGCAGAAGGAGAAGGAAAGAGAAAGAGAGAG
6854868 GAGAGAGAGA
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
76 15 0.28
77 3 0.06
78 36 0.67
ACGTcount: A:0.50, C:0.01, G:0.46, T:0.03
Consensus pattern (76 bp):
AGAGAAAGGGAAAAGGAAAGAGAAAGGAGAGAAAGGCAGAAGGAGAAGGAAAGAGAAAGAGAGAG
ATAAGGAGAGG
Found at i:6854810 original size:21 final size:20
Alignment explanation
Indices: 6854778--6854873 Score: 74
Period size: 21 Copynumber: 4.8 Consensus size: 20
6854768 AGAAAGAGAA
* *
6854778 AGAGAAAGAGAGAGATAAGG
1 AGAGAGAGAGAGAGAAAAGG
*
6854798 AGAGGAGAGAGAGGGAAAAGG
1 AGA-GAGAGAGAGAGAAAAGG
*
6854819 AGAGAGAGAG-GAGGGAAAGG
1 AGAGAGAGAGAGA-GAAAAGG
*
6854839 CAGA-AG-GAGA-AGGAAAGGG
1 -AGAGAGAGAGAGA-GAAAAGG
6854858 AGAGAGAGAGGAGAGA
1 AGAGAGAGA-GAGAGA
6854874 GAGAAGCAGC
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
18 3 0.05
19 13 0.21
20 20 0.33
21 24 0.39
22 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.49, T:0.01
Consensus pattern (20 bp):
AGAGAGAGAGAGAGAAAAGG
Found at i:6854825 original size:18 final size:18
Alignment explanation
Indices: 6854802--6854868 Score: 64
Period size: 18 Copynumber: 3.6 Consensus size: 18
6854792 ATAAGGAGAG
6854802 GAGAGAGAGGGAAAAGGA
1 GAGAGAGAGGGAAAAGGA
*
6854820 GAGAGAGAGGAGGGAAAGGCA
1 GAGAGAGA-G-GGAAAAGG-A
* *
6854841 GA-AGGAGAAGGAAAGGGA
1 GAGA-GAGAGGGAAAAGGA
6854859 GAGAGAGAGG
1 GAGAGAGAGG
6854869 AGAGAGAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
18 16 0.41
19 8 0.21
20 8 0.21
21 7 0.18
ACGTcount: A:0.46, C:0.01, G:0.52, T:0.00
Consensus pattern (18 bp):
GAGAGAGAGGGAAAAGGA
Found at i:6854845 original size:27 final size:27
Alignment explanation
Indices: 6854797--6854848 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
6854787 GAGAGATAAG
* *
6854797 GAGAGGAGAGAGAGGGAAAAGGAGAGA
1 GAGAGGAGAGAAAGGCAAAAGGAGAGA
* *
6854824 GAGAGGAGGGAAAGGCAGAAGGAGA
1 GAGAGGAGAGAAAGGCAAAAGGAGA
6854849 AGGAAAGGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.52, T:0.00
Consensus pattern (27 bp):
GAGAGGAGAGAAAGGCAAAAGGAGAGA
Found at i:6860978 original size:24 final size:24
Alignment explanation
Indices: 6860951--6860998 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
6860941 AACTCCTTGT
6860951 AATCTAACCGATTTACCAATTTGC
1 AATCTAACCGATTTACCAATTTGC
6860975 AATCTAACCGATTTACCAATTTGC
1 AATCTAACCGATTTACCAATTTGC
6860999 TTTCCTCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (24 bp):
AATCTAACCGATTTACCAATTTGC
Found at i:6861474 original size:20 final size:21
Alignment explanation
Indices: 6861449--6861495 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
6861439 TAGCCCAAAC
*
6861449 TGTGTGATTA-TCCACACGCT
1 TGTGTGACTACTCCACACGCT
6861469 TGTGTGACTACTCCACACGCT
1 TGTGTGACTACTCCACACGCT
6861490 TGTGTG
1 TGTGTG
6861496 CGTAGATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (21 bp):
TGTGTGACTACTCCACACGCT
Found at i:6862026 original size:18 final size:18
Alignment explanation
Indices: 6862005--6862039 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
6861995 CAAGTATTCA
6862005 ACCCAACCCAACCCAATT
1 ACCCAACCCAACCCAATT
6862023 ACCCAACCCAACCCAAT
1 ACCCAACCCAACCCAAT
6862040 CATAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.51, G:0.00, T:0.09
Consensus pattern (18 bp):
ACCCAACCCAACCCAATT
Found at i:6862029 original size:23 final size:23
Alignment explanation
Indices: 6861980--6862038 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
6861970 TATTCACCTA
* **
6861980 AACCCAATCCAAACCCAAGTATTC
1 AACCCAA-CCCAACCCAAGTACCC
*
6862004 AACCCAACCCAACCCAATTACCC
1 AACCCAACCCAACCCAAGTACCC
6862027 AACCCAACCCAA
1 AACCCAACCCAA
6862039 TCATAAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 24 0.77
24 7 0.23
ACGTcount: A:0.42, C:0.46, G:0.02, T:0.10
Consensus pattern (23 bp):
AACCCAACCCAACCCAAGTACCC
Found at i:6862090 original size:14 final size:13
Alignment explanation
Indices: 6862067--6862110 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
6862057 ATTTAATAAA
*
6862067 TAAAAATAAAATTC
1 TAAAACTAAAA-TC
6862081 TAAAACTAAAATC
1 TAAAACTAAAATC
*
6862094 -AAAACTAAAGTC
1 TAAAACTAAAATC
6862106 TAAAA
1 TAAAA
6862111 GTCTAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 11 0.41
13 6 0.22
14 10 0.37
ACGTcount: A:0.64, C:0.11, G:0.02, T:0.23
Consensus pattern (13 bp):
TAAAACTAAAATC
Found at i:6862156 original size:9 final size:9
Alignment explanation
Indices: 6862142--6862235 Score: 109
Period size: 9 Copynumber: 10.4 Consensus size: 9
6862132 GTAGTGATTC
6862142 AATTCGGTT
1 AATTCGGTT
*
6862151 AATTCGGGT
1 AATTCGGTT
*
6862160 AATTCGGGT
1 AATTCGGTT
*
6862169 AATTCGGGT
1 AATTCGGTT
*
6862178 AATTCGGGT
1 AATTCGGTT
6862187 AATTCGGTT
1 AATTCGGTT
*
6862196 AATTTAGG-T
1 AA-TTCGGTT
*
6862205 AATTCAGTT
1 AATTCGGTT
6862214 AATTCGGTT
1 AATTCGGTT
*
6862223 AGTTCGGTT
1 AATTCGGTT
6862232 AATT
1 AATT
6862236 TTTAACCAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
8 3 0.04
9 68 0.91
10 4 0.05
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:6862411 original size:12 final size:12
Alignment explanation
Indices: 6862394--6862418 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6862384 TGTTATTTCG
6862394 GGTCGGTTAACC
1 GGTCGGTTAACC
6862406 GGTCGGTTAACC
1 GGTCGGTTAACC
6862418 G
1 G
6862419 AATGAACACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:6870561 original size:613 final size:613
Alignment explanation
Indices: 6869590--6870817 Score: 2402
Period size: 613 Copynumber: 2.0 Consensus size: 613
6869580 CGGAGTTGGC
* *
6869590 ACCATAGAAGTTGTTTGAAGTACTGCCTTCATTTCCTAGAAGACTCGTCCAACTTAAAAAGGAGC
1 ACCACAGAAGTTGTTTGAAGTACTACCTTCATTTCCTAGAAGACTCGTCCAACTTAAAAAGGAGC
*
6869655 GAGAAGAAAAGAAGAACCTTGACACTTTTCAAAAGGTAGAAATCAACATTCCTCTTCTTGATGCG
66 GAGAAGAAAAGAAGAACCTTGACACTTTTCAAAAGGTAGAAATCAACATTCCTCTTCTTGATACG
6869720 ATTAAGCAGATTCTATAATATGAAAATTTTTTAAAAGAATTATGCATGAGTAATAAGAAGCTCTT
131 ATTAAGCAGATTCTATAATATGAAAATTTTTTAAAAGAATTATGCATGAGTAATAAGAAGCTCTT
6869785 GGGTAATGAAAATGTAAGTGTCGGAGAAAACGTCTCCGCTTTTGTACAAAAGAAAATACCACTTA
196 GGGTAATGAAAATGTAAGTGTCGGAGAAAACGTCTCCGCTTTTGTACAAAAGAAAATACCACTTA
6869850 AATGTAAAGACCAATATATGTTCTCTATATCTTGCAAAATAGGTAGTGTTAGAATTAAAAAAGCC
261 AATGTAAAGACCAATATATGTTCTCTATATCTTGCAAAATAGGTAGTGTTAGAATTAAAAAAGCC
*
6869915 ATGTGCGATTTAGGTGCATCTATTAACGTTATGCCTTTCTCTATTTATAAACTACTAAACACGTG
326 ATATGCGATTTAGGTGCATCTATTAACGTTATGCCTTTCTCTATTTATAAACTACTAAACACGTG
6869980 TCCTTTGAAAGAAACATGTGTAATCAATCAGCTTGCAGATAGGTCTATAGTGTATCTAGAAGGAG
391 TCCTTTGAAAGAAACATGTGTAATCAATCAGCTTGCAGATAGGTCTATAGTGTATCTAGAAGGAG
*
6870045 TGCTGGAGGATGTTCTTGTCAAGGTAAATGAACTTATTTTTCTTGTAGATTTCTACATCATCAAC
456 TGCTGAAGGATGTTCTTGTCAAGGTAAATGAACTTATTTTTCTTGTAGATTTCTACATCATCAAC
6870110 ATGGAGGATAACAACTCGGTCAATTCTTCTGATTTACTACTAGGGAGACCATTTTTGAGTACTGC
521 ATGGAGGATAACAACTCGGTCAATTCTTCTGATTTACTACTAGGGAGACCATTTTTGAGTACTGC
6870175 ACAAACAAAGATTGATTTGTGGAACGGA
586 ACAAACAAAGATTGATTTGTGGAACGGA
6870203 ACCACAGAAGTTGTTTGAAGTACTACCTTCATTTCCTAGAAGACTCGTCCAACTTAAAAAGGAGC
1 ACCACAGAAGTTGTTTGAAGTACTACCTTCATTTCCTAGAAGACTCGTCCAACTTAAAAAGGAGC
6870268 GAGAAGAAAAGAAGAACCTTGACACTTTTCAAAAGGTAGAAATCAACATTCCTCTTCTTGATACG
66 GAGAAGAAAAGAAGAACCTTGACACTTTTCAAAAGGTAGAAATCAACATTCCTCTTCTTGATACG
6870333 ATTAAGCAGATTCTATAATATGAAAATTTTTTAAAAGAATTATGCATGAGTAATAAGAAGCTCTT
131 ATTAAGCAGATTCTATAATATGAAAATTTTTTAAAAGAATTATGCATGAGTAATAAGAAGCTCTT
6870398 GGGTAATGAAAATGTAAGTGTCGGAGAAAACGTCTCCGCTTTTGTACAAAAGAAAATACCACTTA
196 GGGTAATGAAAATGTAAGTGTCGGAGAAAACGTCTCCGCTTTTGTACAAAAGAAAATACCACTTA
6870463 AATGTAAAGACCAATATATGTTCTCTATATCTTGCAAAATAGGTAGTGTTAGAATTAAAAAAGCC
261 AATGTAAAGACCAATATATGTTCTCTATATCTTGCAAAATAGGTAGTGTTAGAATTAAAAAAGCC
*
6870528 ATATGCGATTTAGGTGCATCTATTAACGTTATGCCTTTGTCTATTTATAAACTACTAAACACGTG
326 ATATGCGATTTAGGTGCATCTATTAACGTTATGCCTTTCTCTATTTATAAACTACTAAACACGTG
6870593 TCCTTTGAAAGAAACATGTGTAATCAATCAGCTTGCAGATAGGTCTATAGTGTATCTAGAAGGAG
391 TCCTTTGAAAGAAACATGTGTAATCAATCAGCTTGCAGATAGGTCTATAGTGTATCTAGAAGGAG
6870658 TGCTGAAGGATGTTCTTGTCAAGGTAAATGAACTTATTTTTCTTGTAGATTTCTACATCATCAAC
456 TGCTGAAGGATGTTCTTGTCAAGGTAAATGAACTTATTTTTCTTGTAGATTTCTACATCATCAAC
6870723 ATGGAGGATAACAACTCGGTCAATTCTTCTGATTTACTACTAGGGAGACCATTTTTGAGTACTGC
521 ATGGAGGATAACAACTCGGTCAATTCTTCTGATTTACTACTAGGGAGACCATTTTTGAGTACTGC
6870788 ACAAACAAAGATTGATTTGTGGAACGGA
586 ACAAACAAAGATTGATTTGTGGAACGGA
6870816 AC
1 AC
6870818 ACTCACTATG
Statistics
Matches: 609, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
613 609 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (613 bp):
ACCACAGAAGTTGTTTGAAGTACTACCTTCATTTCCTAGAAGACTCGTCCAACTTAAAAAGGAGC
GAGAAGAAAAGAAGAACCTTGACACTTTTCAAAAGGTAGAAATCAACATTCCTCTTCTTGATACG
ATTAAGCAGATTCTATAATATGAAAATTTTTTAAAAGAATTATGCATGAGTAATAAGAAGCTCTT
GGGTAATGAAAATGTAAGTGTCGGAGAAAACGTCTCCGCTTTTGTACAAAAGAAAATACCACTTA
AATGTAAAGACCAATATATGTTCTCTATATCTTGCAAAATAGGTAGTGTTAGAATTAAAAAAGCC
ATATGCGATTTAGGTGCATCTATTAACGTTATGCCTTTCTCTATTTATAAACTACTAAACACGTG
TCCTTTGAAAGAAACATGTGTAATCAATCAGCTTGCAGATAGGTCTATAGTGTATCTAGAAGGAG
TGCTGAAGGATGTTCTTGTCAAGGTAAATGAACTTATTTTTCTTGTAGATTTCTACATCATCAAC
ATGGAGGATAACAACTCGGTCAATTCTTCTGATTTACTACTAGGGAGACCATTTTTGAGTACTGC
ACAAACAAAGATTGATTTGTGGAACGGA
Found at i:6875820 original size:17 final size:18
Alignment explanation
Indices: 6875798--6875831 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6875788 CATTTTATAA
*
6875798 TACATATGCAT-TTTTTT
1 TACATATACATGTTTTTT
6875815 TACATATACATGTTTTT
1 TACATATACATGTTTTT
6875832 AGAAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TACATATACATGTTTTTT
Found at i:6879603 original size:20 final size:20
Alignment explanation
Indices: 6879578--6879617 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
6879568 TTCATCTCAT
6879578 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
6879598 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
6879618 AAGACCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:6887807 original size:89 final size:89
Alignment explanation
Indices: 6887695--6888225 Score: 855
Period size: 89 Copynumber: 6.0 Consensus size: 89
6887685 GAGTAGAAGT
* * * *
6887695 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAAAGCAGATCTGGTCTTCATGTACT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
6887760 GGCGTGAAGTAGATCAAAGAAAAC
66 GGCGTGAAGTAGATCAAAGAAAAC
*
6887784 ATATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
*
6887849 GGCGTGAAGTAGATCAAAGATAAC
66 GGCGTGAAGTAGATCAAAGAAAAC
* * *
6887873 AGATCTTGTCTTTCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATATTGTCTTCATGCACT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
*
6887938 GGCGTGAAGTAGATCAAAGACAAC
66 GGCGTGAAGTAGATCAAAGAAAAC
**
6887962 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAATGGATCTTGTCTTCATGTACT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
*
6888027 GGCGTGAAGTAGATTAAAGAAAAC
66 GGCGTGAAGTAGATCAAAGAAAAC
*
6888051 AGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
*
6888116 GGCGTGAAGTAGATCAAAGATAAC
66 GGCGTGAAGTAGATCAAAGAAAAC
* * * * * *
6888140 AGATCTTGTATTCCCATACTGGTGGCGAAGTAGGTCGAAGATAGCAGATCTTGTCTTCCTGTATT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
*
6888205 GCCAGTGAAGTAGATCAAAGA
66 GGC-GTGAAGTAGATCAAAGA
6888226 TATAAGTCTT
Statistics
Matches: 410, Mismatches: 31, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
89 393 0.96
90 17 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (89 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
GGCGTGAAGTAGATCAAAGAAAAC
Found at i:6889853 original size:17 final size:18
Alignment explanation
Indices: 6889831--6889864 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6889821 CATTTTATAA
*
6889831 TACATATGCAT-TTTTTT
1 TACATATACATGTTTTTT
6889848 TACATATACATGTTTTT
1 TACATATACATGTTTTT
6889865 AGAAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TACATATACATGTTTTTT
Found at i:6907422 original size:109 final size:106
Alignment explanation
Indices: 6907225--6907526 Score: 403
Period size: 95 Copynumber: 2.9 Consensus size: 106
6907215 AAAATTCAAG
* * *
6907225 AGGATATTTGGCTATTTGGTTAAACGAGAAATCGAAACCCAGCACATTATGGCATG-TTCCTCGA
1 AGGATATTTGGCTATTTGGTT-AACGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
*
6907289 ATTTTCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
*
6907331 AGGATATTTGCCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTT-AACGAG--AAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
6907396 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
63 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
6907440 AGGATATTTGGCTA--T--TT---G-G---TCGAAACCCAGCACATTAGGGCACGTTTTCTCGAA
1 AGGATATTTGGCTATTTGGTTAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAA
* * * *
6907494 TTTCCAAACGCTAAATATTGCCTCATTTAGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTGAAA
6907527 AATTTTCCTT
Statistics
Matches: 182, Mismatches: 11, Indels: 17
0.87 0.05 0.08
Matches are distributed among these distances:
95 64 0.35
100 1 0.01
101 1 0.01
105 2 0.01
106 26 0.14
107 1 0.01
108 26 0.14
109 61 0.34
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (106 bp):
AGGATATTTGGCTATTTGGTTAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
Found at i:6908381 original size:9 final size:9
Alignment explanation
Indices: 6908341--6908403 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 9
6908331 GATAAGCAAC
*
6908341 AATAATATA
1 AATAATAAA
*
6908350 AACAATAATA
1 AATAATAA-A
**
6908360 AATAATAGT
1 AATAATAAA
6908369 AATAAT--A
1 AATAATAAA
6908376 AA-AATAAA
1 AATAATAAA
6908384 AATAATAAA
1 AATAATAAA
*
6908393 AATACTAAA
1 AATAATAAA
6908402 AA
1 AA
6908404 AAGGGACTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
6 3 0.07
7 2 0.05
8 3 0.07
9 28 0.65
10 7 0.16
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (9 bp):
AATAATAAA
Found at i:6909707 original size:41 final size:41
Alignment explanation
Indices: 6909644--6909752 Score: 164
Period size: 41 Copynumber: 2.6 Consensus size: 41
6909634 CTTAATTTAA
* *
6909644 CAGATTCACCGGCACTTGGCCTGCTAGGCTTATAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
* *
6909686 CAGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
*
6909727 CAGATCACCGGCACTTAGCCTACTAG
1 CAGATCACCGGCACTTAGCCTGCTAG
6909753 ACGTATAGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 57 0.93
42 4 0.07
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
Found at i:6912453 original size:12 final size:12
Alignment explanation
Indices: 6912436--6912467 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
6912426 CGAGTCTTGA
*
6912436 CTTCTCTTGATG
1 CTTCTCTTGACG
6912448 CTTCTCTTGACG
1 CTTCTCTTGACG
6912460 CTTCTCTT
1 CTTCTCTT
6912468 CAAGTAGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.31, G:0.12, T:0.50
Consensus pattern (12 bp):
CTTCTCTTGACG
Found at i:6912824 original size:44 final size:44
Alignment explanation
Indices: 6912776--6912979 Score: 114
Period size: 44 Copynumber: 4.6 Consensus size: 44
6912766 ACCATTTTCG
*
6912776 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATCTTCA
* * * * * *
6912820 ATCTATTCCACTGCTACCCAGGGAGAT-AGA-AT-TATTGGCTTCA
1 ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * ** *
6912863 ATGTACTCCACTGTAAC--CACAGGGATG-TAAAATCCGCCATCTTCG
1 ATCTACTCCAC--T-ACTGCTCAGGGA-GATAAGATCTGTAATCTTCA
* * *
6912908 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCA
1 ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATCTTCA
* * * * *
6912952 ATCTATTCTACTGCTGCCCAAGGAGATA
1 ATCTACTCCACTACTGCTCAGGGAGATA
6912980 GAATTTTTGG
Statistics
Matches: 113, Mismatches: 35, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 19 0.17
44 69 0.61
45 17 0.15
46 1 0.01
47 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATCTTCA
Found at i:6912945 original size:132 final size:132
Alignment explanation
Indices: 6912708--6913319 Score: 750
Period size: 132 Copynumber: 4.6 Consensus size: 132
6912698 CGCAACGTCG
* * * ** * * *
6912708 GGGAGATAGAATTACTAGCTTCAATATACTCCACTGTAACCTTAGGGAGGTAAAATTCACCATTT
1 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCT
* * * *
6912773 TCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACC
66 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAAC
6912838 CA
131 CA
*
6912840 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGATGTAAAATCCGCCATCT
1 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCT
* * * ***
6912905 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCAATCTATTCTACTGCTGCC
66 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAAC
6912970 CA
131 CA
* * * * * *
6912972 AGGAGATAGAATTTTTGGCTTTAATATACTCTACTGTAACCACAGAGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCT
* * *
6913037 TCGATCTGCTCAACTATTGCTTAGAGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAAC
66 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAAC
6913102 CA
131 CA
* * *
6913104 GGGAGATAGAATTACTGGCTTCAATGTACTTCAATGTACTCCACTGTAATCAAAGGGAGGTAAAA
1 GGGAGATAGAATTA------T---TG-GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAA
* *
6913169 TCTGCCATCTTCGATCTACT-C-C-A---CTTAGGGAGATAAGATCTGAAATCTTCAATCTATTC
56 TCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTC
*
6913228 CACTGCCAACTA
121 CACTGCCAACCA
* * * *
6913240 GAGAGATAGAATTACTGGCTTCAATGTACTCCATTGTAACCACAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCT
6913305 TCGATCTGCTCCACT
66 TCGATCTGCTCCACT
6913320 GTCAATGCAG
Statistics
Matches: 417, Mismatches: 50, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
126 53 0.13
127 3 0.01
128 1 0.00
132 247 0.59
136 59 0.14
138 1 0.00
139 1 0.00
140 1 0.00
141 2 0.00
142 49 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (132 bp):
GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCT
TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAAC
CA
Found at i:6913210 original size:38 final size:38
Alignment explanation
Indices: 6913157--6913231 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
6913147 CTGTAATCAA
* ** *
6913157 AGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTT
1 AGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTT
* *
6913195 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACT
1 AGGGAGATAAAATCTGAAATCTTCAATCTACTCCACT
6913232 GCCAACTAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (38 bp):
AGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTT
Found at i:6913229 original size:136 final size:139
Alignment explanation
Indices: 6912998--6913269 Score: 415
Period size: 136 Copynumber: 2.0 Consensus size: 139
6912988 GGCTTTAATA
* * *
6912998 TACTCTACTGTAACCACAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCAACTATTGCTTAGAG
1 TACTCCACTGTAACCAAAGAGAGGTAAAATCCGCCATCTTCGATCTACTC-ACTA-T-CTTAGAG
*
6913063 AGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTCAA
63 AGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGAGAGATAGAATTACTGGCTTCAA
6913128 TGTACTTCAATG
128 TGTACTTCAATG
* * * *
6913140 TACTCCACTGTAATCAAAGGGAGGTAAAATCTGCCATCTTCGATCTACTC-C-A-CTTAGGGAGA
1 TACTCCACTGTAACCAAAGAGAGGTAAAATCCGCCATCTTCGATCTACTCACTATCTTAGAGAGA
*
6913202 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACTAGAGAGATAGAATTACTGGCTTCAATGT
66 TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGAGAGATAGAATTACTGGCTTCAATGT
6913267 ACT
131 ACT
6913270 CCATTGTAAC
Statistics
Matches: 121, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
136 75 0.62
139 1 0.01
140 1 0.01
142 44 0.36
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (139 bp):
TACTCCACTGTAACCAAAGAGAGGTAAAATCCGCCATCTTCGATCTACTCACTATCTTAGAGAGA
TAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGAGAGATAGAATTACTGGCTTCAATGT
ACTTCAATG
Found at i:6914781 original size:11 final size:11
Alignment explanation
Indices: 6914765--6914816 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
6914755 CTCTCATTCC
6914765 TTTTTTCTTTT
1 TTTTTTCTTTT
6914776 TTTTTTCTTCTT
1 TTTTTTCTT-TT
* *
6914788 TTTTTTCCTCT
1 TTTTTTCTTTT
6914799 TTTTTTCTTTT
1 TTTTTTCTTTT
6914810 TTGTTTT
1 TT-TTTT
6914817 TTGAATCTGG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
11 21 0.60
12 14 0.40
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:6914801 original size:23 final size:23
Alignment explanation
Indices: 6914765--6914817 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
6914755 CTCTCATTCC
* *
6914765 TTTTTTCTTTTTTTTTTCTTCTT
1 TTTTTTCCTCTTTTTTTCTTCTT
*
6914788 TTTTTTCCTCTTTTTTTCTTTTT
1 TTTTTTCCTCTTTTTTTCTTCTT
6914811 TGTTTTT
1 T-TTTTT
6914818 TGAATCTGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (23 bp):
TTTTTTCCTCTTTTTTTCTTCTT
Found at i:6919287 original size:109 final size:107
Alignment explanation
Indices: 6919089--6919390 Score: 407
Period size: 95 Copynumber: 2.9 Consensus size: 107
6919079 AATATTCAAG
* *
6919089 AGGATATTTGGCTATTTGGTTAAACAAG-AAATCGAAACCCAGCACATTAGGGCACG-TTCCTCG
1 AGGATATTTGGCTATTTGGTT-AACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
*
6919152 AATTTTCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
65 AATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
*
6919195 AGGATATTTGCCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTT-AACGAG-AAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
6919260 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
64 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
6919304 AGGATATTTGGCTA--T--TT---G-G----TCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTGGTTAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
* * * *
6919357 ATTTCCAAACGCTAAATATTGCCTCATTTAGAAA
66 ATTTCCAAACGCAAAACATTGCCTTATTTTGAAA
6919391 AATTTTCCTT
Statistics
Matches: 183, Mismatches: 10, Indels: 17
0.87 0.05 0.08
Matches are distributed among these distances:
95 64 0.35
100 1 0.01
101 1 0.01
105 2 0.01
106 25 0.14
107 1 0.01
108 28 0.15
109 61 0.33
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (107 bp):
AGGATATTTGGCTATTTGGTTAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
ATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
Found at i:6920227 original size:22 final size:22
Alignment explanation
Indices: 6920157--6920227 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
6920147 AAATTCAATA
*
6920157 TCAATTTCCTTCAAAAATTCTC
1 TCAAATTCCTTCAAAAATTCTC
*
6920179 TC-AATCCCGTTCAAAAATTCTC
1 TCAAATTCC-TTCAAAAATTCTC
*
6920201 TCAAATTCCTTCCAAAATTCTC
1 TCAAATTCCTTCAAAAATTCTC
6920223 TCAAA
1 TCAAA
6920228 CTCTCAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.09
22 34 0.79
23 5 0.12
ACGTcount: A:0.34, C:0.30, G:0.01, T:0.35
Consensus pattern (22 bp):
TCAAATTCCTTCAAAAATTCTC
Done.