Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 26 of 170
Found at i:6920233 original size:30 final size:30
Alignment explanation
Indices: 6920198--6920256 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
6920188 TTCAAAAATT
*
6920198 CTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
6920228 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
6920257 TTTCCTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:6920267 original size:21 final size:22
Alignment explanation
Indices: 6920228--6920269 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
6920218 TTCTCTCAAA
6920228 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
6920250 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
6920270 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:6920376 original size:29 final size:29
Alignment explanation
Indices: 6920313--6920376 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
6920303 TAAATTTCAT
* *
6920313 TATTTTAAGAAAATTTTAAAATTTTTTAT
1 TATTTTAAAAAAATTTTAAAATTTTTTAA
*
6920342 TTTTTTAAAAATAATTTTAAAA-TTTTTAA
1 TATTTTAAAAA-AATTTTAAAATTTTTTAA
6920371 TATTTT
1 TATTTT
6920377 CAACAATGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
TATTTTAAAAAAATTTTAAAATTTTTTAA
Found at i:6920496 original size:14 final size:15
Alignment explanation
Indices: 6920467--6920500 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
6920457 AAATTTAAAA
6920467 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
6920482 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
6920496 TTTTA
1 TTTTA
6920501 GATATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:6922692 original size:29 final size:29
Alignment explanation
Indices: 6922646--6923274 Score: 626
Period size: 29 Copynumber: 22.3 Consensus size: 29
6922636 TTTTGACATT
*
6922646 ATTTGATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
6922675 ATTTAATTAAAAA---T---CCTAACTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* * *
6922698 ACTTAATTAAAAACCCTTA-CCTAACTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
6922726 ATTTAATTAAAAACCCTTACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
6922755 ATTTAATTAAAAACCCTAA-CCTAACTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
6922783 ATTTAATTAAAAACCCTTACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* **
6922812 ATTTAATTAAAAACTCTAA-CCTAATTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* * ***
6922840 ATTTAATTAAAAAACCTTACCCTATTTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* ***
6922869 ATTTAATTAAAAACCCTTACCCTATTTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
6922898 ATTTAATT--AAA----AACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
6922921 ATTTAGTTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* *
6922950 TTTTACA-TGAAAACCCTAACCCTAACCTA
1 ATTTA-ATTAAAAACCCTAACCCTAACCTA
* *
6922979 TTTTAATTAAAATCCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* * **
6923008 ATTTAATTAAAAACTCTAA-CATAATTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
6923036 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* *
6923065 TTTTACA-TGAAAACCCTAACCCTAACCTA
1 ATTTA-ATTAAAAACCCTAACCCTAACCTA
6923094 ATTTAATTAAAAA--C--A--CTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
6923117 ATTTAGTTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* *
6923146 TTTTACA-TGAAAACCCTAACCCTAACCT-
1 ATTTA-ATTAAAAACCCTAACCCTAACCTA
*
6923174 ATCTTAATTAAAATCCCTAACCCTAACCTA
1 AT-TTAATTAAAAACCCTAACCCTAACCTA
* * * **
6923204 ATTTAATTGAAAACCCTTACCCTGATTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* * *
6923233 TCATTTTATTTGAAATCCCTAACCCTAACCTA
1 --A-TTTAATTAAAAACCCTAACCCTAACCTA
6923265 ATTTAATTAA
1 ATTTAATTAA
6923275 TGTAAAAACC
Statistics
Matches: 505, Mismatches: 63, Indels: 64
0.80 0.10 0.10
Matches are distributed among these distances:
23 55 0.11
25 5 0.01
26 2 0.00
27 5 0.01
28 104 0.21
29 307 0.61
30 4 0.01
31 1 0.00
32 22 0.04
ACGTcount: A:0.42, C:0.24, G:0.01, T:0.33
Consensus pattern (29 bp):
ATTTAATTAAAAACCCTAACCCTAACCTA
Found at i:6922751 original size:57 final size:58
Alignment explanation
Indices: 6922646--6923274 Score: 599
Period size: 57 Copynumber: 11.2 Consensus size: 58
6922636 TTTTGACATT
* *
6922646 ATTTGATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAA----T--CCTAACTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
* * *
6922698 ACTTAATTAAAAACCCTTA-CCTAACTTAATTTAATTAAAAACCCTTACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
*
6922755 ATTTAATTAAAAACCCTAA-CCTAACTTAATTTAATTAAAAACCCTTACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
* ** * ***
6922812 ATTTAATTAAAAACTCTAA-CCTAATTTAATTTAATTAAAAAACCTTACCCTATTTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
* ***
6922869 ATTTAATTAAAAACCCTTACCCTATTTTAATTTAATT-AAAA-----ACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
* * * *
6922921 ATTTAGTTAAAAACCCTAACCCTAACCTATTTTACA-TGAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTA-ATTAAAAACCCTTACCCTAACCTA
* * * * * **
6922979 TTTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACTC-TAACATAATTTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
* * *
6923036 ATTTAATTAAAAACCCTAACCCTAACCTATTTTACA-TGAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTA-ATTAAAAACCCTTACCCTAACCTA
* *
6923094 ATTTAATTAAAAA--C--A--CTAACCTAATTTAGTTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
* * * *
6923146 TTTTACA-TGAAAACCCTAACCCTAACCT-ATCTTAATTAAAATCCCTAACCCTAACCTA
1 ATTTA-ATTAAAAACCCTAACCCTAACCTAAT-TTAATTAAAAACCCTTACCCTAACCTA
* * * ** * * * *
6923204 ATTTAATTGAAAACCCTTACCCTGATTTATCATTTTATTTGAAATCCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA--A-TTTAATTAAAAACCCTTACCCTAACCTA
6923265 ATTTAATTAA
1 ATTTAATTAA
6923275 TGTAAAAACC
Statistics
Matches: 485, Mismatches: 61, Indels: 53
0.81 0.10 0.09
Matches are distributed among these distances:
51 21 0.04
52 95 0.20
53 6 0.01
54 2 0.00
55 1 0.00
56 2 0.00
57 184 0.38
58 138 0.28
61 35 0.07
62 1 0.00
ACGTcount: A:0.42, C:0.24, G:0.01, T:0.33
Consensus pattern (58 bp):
ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTTACCCTAACCTA
Found at i:6923035 original size:196 final size:196
Alignment explanation
Indices: 6922646--6923217 Score: 755
Period size: 196 Copynumber: 2.9 Consensus size: 196
6922636 TTTTGACATT
* * * * *
6922646 ATTTGATTAAAAACCCTAACCCTAACCTAATTTA-ATTAAAAATCCTAA-CTTAACTTAA-TTAA
1 ATTTAATTAAAAAACCTAACCCTAACCTAATTTACA-TAAAAACCCTAACCCTAACCTAATTTAA
** * * * * *
6922708 --AAACCCTTACCTAACTTAATTTAATTAAAAACCCTTACCCTAACCTAATTTA-ATTAAAAACC
65 TTAAAAAC---CCTAACCTAATTTAGTTAAAAACCCTAACCCTAACCTATTTTACA-TGAAAACC
* * * * *
6922770 CTAA-CCTAACTTAATTTAATTAAAAACCCTTACCCTAACCTAATTTAATTAAAAACTCTAACCT
126 CTAACCCTAACCTATTTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACTCTAACAT
6922834 AATTTA
191 AATTTA
* *** * ***
6922840 ATTTAATTAAAAAACCTTACCCTATTTTAATTTA-ATTAAAAACCCTTACCCTATTTTAATTTAA
1 ATTTAATTAAAAAACCTAACCCTAACCTAATTTACA-TAAAAACCCTAACCCTAACCTAATTTAA
6922904 TTAAAAACCCTAACCTAATTTAGTTAAAAACCCTAACCCTAACCTATTTTACATGAAAACCCTAA
65 TTAAAAACCCTAACCTAATTTAGTTAAAAACCCTAACCCTAACCTATTTTACATGAAAACCCTAA
6922969 CCCTAACCTATTTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACTCTAACATAATT
130 CCCTAACCTATTTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACTCTAACATAATT
6923034 TA
195 TA
* * *
6923036 ATTTAATTAAAAACCCTAACCCTAACCTATTTTACATGAAAACCCTAACCCTAACCTAATTTAAT
1 ATTTAATTAAAAAACCTAACCCTAACCTAATTTACATAAAAACCCTAACCCTAACCTAATTTAAT
*
6923101 TAAAAACACTAACCTAATTTAGTTAAAAACCCTAACCCTAACCTATTTTACATGAAAACCCTAAC
66 TAAAAACCCTAACCTAATTTAGTTAAAAACCCTAACCCTAACCTATTTTACATGAAAACCCTAAC
* *
6923166 CCTAACCTATCTTAATTAAAATCCCTAACCCTAACCTAATTTAATTGAAAAC
131 CCTAACCTATTTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAAC
6923218 CCTTACCCTG
Statistics
Matches: 334, Mismatches: 37, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
194 40 0.12
195 57 0.17
196 232 0.69
197 1 0.00
198 4 0.01
ACGTcount: A:0.43, C:0.24, G:0.01, T:0.32
Consensus pattern (196 bp):
ATTTAATTAAAAAACCTAACCCTAACCTAATTTACATAAAAACCCTAACCCTAACCTAATTTAAT
TAAAAACCCTAACCTAATTTAGTTAAAAACCCTAACCCTAACCTATTTTACATGAAAACCCTAAC
CCTAACCTATTTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACTCTAACATAATTT
A
Found at i:6927074 original size:19 final size:19
Alignment explanation
Indices: 6927050--6927093 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
6927040 TAAATTAGCC
6927050 AATAATA-TAGACAATAATA
1 AATAATAGTA-ACAATAATA
*
6927069 AATAATAGTAATAATAATA
1 AATAATAGTAACAATAATA
6927088 AA-AATA
1 AATAATA
6927094 ATAAAATTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 17 0.74
20 2 0.09
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (19 bp):
AATAATAGTAACAATAATA
Found at i:6927093 original size:9 final size:9
Alignment explanation
Indices: 6927062--6927109 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
6927052 TAATATAGAC
6927062 AATAATAAA
1 AATAATAAA
* *
6927071 TAATAGTAAT
1 -AATAATAAA
6927081 AATAATAAA
1 AATAATAAA
6927090 AATAATAAA
1 AATAATAAA
* *
6927099 ATTACTAAA
1 AATAATAAA
6927108 AA
1 AA
6927110 AATGGACTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
9 24 0.77
10 7 0.23
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (9 bp):
AATAATAAA
Found at i:6928883 original size:16 final size:17
Alignment explanation
Indices: 6928862--6928898 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
6928852 AATTTAACCA
6928862 TTTATTAAA-ATATGTT
1 TTTATTAAAGATATGTT
*
6928878 TTTATTAAAGATATTTT
1 TTTATTAAAGATATGTT
6928895 TTTA
1 TTTA
6928899 GAATAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (17 bp):
TTTATTAAAGATATGTT
Found at i:6935726 original size:11 final size:11
Alignment explanation
Indices: 6935710--6935734 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6935700 GGCCCTATAT
6935710 TATAAAGAAAG
1 TATAAAGAAAG
6935721 TATAAAGAAAG
1 TATAAAGAAAG
6935732 TAT
1 TAT
6935735 CAATGCACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (11 bp):
TATAAAGAAAG
Found at i:6936202 original size:2 final size:2
Alignment explanation
Indices: 6936189--6936226 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
6936179 TAGCTGGGGA
*
6936189 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6936227 TGCTTTCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6946955 original size:17 final size:16
Alignment explanation
Indices: 6946935--6946969 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
6946925 TCATCATGTA
6946935 ATAACTTTCATATACAT
1 ATAACTTTCATAT-CAT
*
6946952 ATAATTTTCATATCAT
1 ATAACTTTCATATCAT
6946968 AT
1 AT
6946970 TTCTATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAACTTTCATATCAT
Found at i:6964040 original size:43 final size:41
Alignment explanation
Indices: 6963992--6964148 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 41
6963982 TATGTGTTTT
*
6963992 CGTGTAAGACCACGTCTGGGACGTTGGCTTCGACTTGTATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTGTA-TTA
* * *
6964035 CGTGTAAGACCATGTTTGGGACATTGGCATCGTATT-TGATT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTGT-ATTA
* * *
6964076 GGTGTATGACC-CTGTCTGAGACAG-TGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TGT-ATTA
*
6964119 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
6964149 TGTACGAGTC
Statistics
Matches: 91, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
40 2 0.02
41 25 0.27
42 9 0.10
43 53 0.58
44 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (41 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTGTATTA
Found at i:6964104 original size:41 final size:42
Alignment explanation
Indices: 6964036--6964136 Score: 105
Period size: 41 Copynumber: 2.4 Consensus size: 42
6964026 TTGTATTTAC
* * * *
6964036 GTGTAAGACCATGTTTGGGACATTGGCATCG-TATTTGATTG
1 GTGTAAGACCATGTCTGAGACAGTGGCATCGATATGTGATTG
* * *
6964077 GTGTATGACCCTGTCTGAGACAGTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGAGACAGTGGCATCGATATGTGATT-G
* *
6964120 ATGTAAGACCACGTCTG
1 GTGTAAGACCATGTCTG
6964137 GGACGTTGGC
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
41 26 0.55
42 8 0.17
43 13 0.28
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGAGACAGTGGCATCGATATGTGATTG
Found at i:6968234 original size:62 final size:62
Alignment explanation
Indices: 6968069--6968222 Score: 263
Period size: 62 Copynumber: 2.5 Consensus size: 62
6968059 ATGTACCTAC
* *
6968069 TTTATATTACAAATTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATAACAAAA
1 TTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAAAA
*
6968131 TTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAATAAAA
1 TTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAAAA
* *
6968193 TTTATATTACAAAGTTTGTTACAAGTTTTA
1 TTTATATTACAAAGTTTGTTCCAATTTTTA
6968223 GCGTTTTAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.37, C:0.06, G:0.07, T:0.50
Consensus pattern (62 bp):
TTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAAAA
Found at i:6968780 original size:6 final size:6
Alignment explanation
Indices: 6968770--6968812 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
6968760 CGATCGCTTA
* ** *
6968770 GGCTCA GGCTCG GGCTCG GGCTCG GGCTTT GGCTCT GGCTCG G
1 GGCTCG GGCTCG GGCTCG GGCTCG GGCTCG GGCTCG GGCTCG G
6968813 CCTCTATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.02, C:0.30, G:0.44, T:0.23
Consensus pattern (6 bp):
GGCTCG
Found at i:6969468 original size:14 final size:14
Alignment explanation
Indices: 6969449--6969483 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
6969439 CAAATTCCAT
*
6969449 GTTAGAATAGTATC
1 GTTAGAATAATATC
6969463 GTTAGAATAATATC
1 GTTAGAATAATATC
*
6969477 ATTAGAA
1 GTTAGAA
6969484 AAAAAATGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (14 bp):
GTTAGAATAATATC
Found at i:6971923 original size:16 final size:17
Alignment explanation
Indices: 6971902--6971949 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 17
6971892 TTCAATGTGG
6971902 TTCTATTATTTGTTT-A
1 TTCTATTATTTGTTTGA
6971918 TTCTATTGCATGTTTGTTTGA
1 TTCTATT--A--TTTGTTTGA
6971939 TTCTATTATTT
1 TTCTATTATTT
6971950 TCCGAATGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
16 7 0.26
17 3 0.11
18 1 0.04
19 1 0.04
20 7 0.26
21 8 0.30
ACGTcount: A:0.17, C:0.08, G:0.10, T:0.65
Consensus pattern (17 bp):
TTCTATTATTTGTTTGA
Found at i:6973058 original size:23 final size:23
Alignment explanation
Indices: 6973031--6973180 Score: 135
Period size: 23 Copynumber: 6.5 Consensus size: 23
6973021 GTGTTATAAT
*
6973031 GTTCATGTTTTGGTTTCTGTTAA
1 GTTCATGTTTTGGTTTATGTTAA
* *
6973054 GTTCATGTTTTAGTTTCTGTTAA
1 GTTCATGTTTTGGTTTATGTTAA
*
6973077 GTTCATGTTTTGGTTTATGTGTTA
1 GTTCATGTTTTGGTTTATGT-TAA
* * * *
6973101 --TAATGTTCAT-GTTTCTATTAA
1 GTTCATGTT-TTGGTTTATGTTAA
**
6973122 GTTCATGTTTTGGTTTATGTTTTG
1 GTTCATGTTTTGGTTTATG-TTAA
**
6973146 GTTCATGTTTTGGTTTATGTTTTG
1 GTTCATGTTTTGGTTTATG-TTAA
6973170 GTTCATGTTTT
1 GTTCATGTTTT
6973181 TCTGTATTAA
Statistics
Matches: 106, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
21 2 0.02
22 13 0.12
23 52 0.49
24 39 0.37
ACGTcount: A:0.14, C:0.07, G:0.21, T:0.59
Consensus pattern (23 bp):
GTTCATGTTTTGGTTTATGTTAA
Found at i:6973143 original size:12 final size:12
Alignment explanation
Indices: 6973122--6973180 Score: 100
Period size: 12 Copynumber: 4.9 Consensus size: 12
6973112 TTTCTATTAA
6973122 GTTCATGTTTTG
1 GTTCATGTTTTG
*
6973134 GTTTATGTTTTG
1 GTTCATGTTTTG
6973146 GTTCATGTTTTG
1 GTTCATGTTTTG
*
6973158 GTTTATGTTTTG
1 GTTCATGTTTTG
6973170 GTTCATGTTTT
1 GTTCATGTTTT
6973181 TCTGTATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.08, C:0.05, G:0.24, T:0.63
Consensus pattern (12 bp):
GTTCATGTTTTG
Found at i:6973153 original size:24 final size:24
Alignment explanation
Indices: 6973122--6973180 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
6973112 TTTCTATTAA
6973122 GTTCATGTTTTGGTTTATGTTTTG
1 GTTCATGTTTTGGTTTATGTTTTG
6973146 GTTCATGTTTTGGTTTATGTTTTG
1 GTTCATGTTTTGGTTTATGTTTTG
6973170 GTTCATGTTTT
1 GTTCATGTTTT
6973181 TCTGTATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.08, C:0.05, G:0.24, T:0.63
Consensus pattern (24 bp):
GTTCATGTTTTGGTTTATGTTTTG
Found at i:6973201 original size:69 final size:67
Alignment explanation
Indices: 6973043--6973179 Score: 181
Period size: 68 Copynumber: 2.1 Consensus size: 67
6973033 TCATGTTTTG
* * *
6973043 GTTTCTGTTAAGTTCATGTTTTAGTTTCTGTTAAGTTCATGTTTTGGTTTATGTGTTATAATGTT
1 GTTTCTATTAAGTTCATGTTTTAGTTTATGTTAAGTTCATGTTTTGGTTTATGTGTTAT-AGGTT
6973108 CAT
65 CAT
* **
6973111 GTTTCTATTAAGTTCATGTTTTGGTTTATGTTTTGGTTCATGTTTTGGTTTATGT-TT-T-GGTT
1 GTTTCTATTAAGTTCATGTTTTAGTTTATG-TTAAGTTCATGTTTTGGTTTATGTGTTATAGGTT
6973173 CAT
65 CAT
6973176 GTTT
1 GTTT
6973180 TTCTGTATTA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
65 10 0.16
67 1 0.02
68 29 0.47
69 22 0.35
ACGTcount: A:0.15, C:0.07, G:0.20, T:0.58
Consensus pattern (67 bp):
GTTTCTATTAAGTTCATGTTTTAGTTTATGTTAAGTTCATGTTTTGGTTTATGTGTTATAGGTTC
AT
Found at i:6973782 original size:16 final size:16
Alignment explanation
Indices: 6973763--6973795 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6973753 TTATATTATA
6973763 TTTTTATTTTTAATAT
1 TTTTTATTTTTAATAT
6973779 TTTTTATTTTTAATAT
1 TTTTTATTTTTAATAT
6973795 T
1 T
6973796 CCAATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTTAATAT
Found at i:6973784 original size:129 final size:129
Alignment explanation
Indices: 6973646--6974182 Score: 879
Period size: 131 Copynumber: 4.3 Consensus size: 129
6973636 TAAAGTTTGG
6973646 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
* * *
6973711 TGCATAAAACTAATTAAATTATATATTTACAAATTAATTATATTATATTATATTTTTATTTTTA
66 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTATATTTTTATTTTTA
6973775 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
* *
6973840 TGCATAAAAATAATTAAATTATATATTTACAAATTAATTAAATTAAATTATAATTTTTTATTTTT
66 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTAT-A-TTTTTATTTTT
6973905 A
129 A
*
6973906 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAATTAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
6973971 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTA-A-----A---TTA
66 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTATATTTTTATTTTTA
*
6974026 A-ATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCAT-TTTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
*
6974089 TGCATAAAACTAATTAAATTATGTA-TTAAAAATTAATTAAATTAAA-T-T-TTTTTATTTTTA
66 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTATATTTTTATTTTTA
6974149 ATATTTTTTATTTTTAATATTCCAATTTATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAA
6974183 ATAAAAATAA
Statistics
Matches: 387, Mismatches: 9, Indels: 29
0.91 0.02 0.07
Matches are distributed among these distances:
116 1 0.00
117 21 0.05
118 44 0.11
119 40 0.10
120 5 0.01
123 5 0.01
124 32 0.08
129 114 0.29
130 1 0.00
131 124 0.32
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (129 bp):
ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTATATTTTTATTTTTA
Found at i:6973911 original size:16 final size:16
Alignment explanation
Indices: 6973892--6973926 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
6973882 TTAAATTATA
6973892 ATTTTTTATTTTTAAT
1 ATTTTTTATTTTTAAT
6973908 ATTTTTTATTTTTAAT
1 ATTTTTTATTTTTAAT
6973924 ATT
1 ATT
6973927 CCAATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTTATTTTTAAT
Found at i:6973969 original size:260 final size:243
Alignment explanation
Indices: 6973646--6974182 Score: 849
Period size: 260 Copynumber: 2.1 Consensus size: 243
6973636 TAAAGTTTGG
6973646 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
* * *
6973711 TGCATAAAACTAATTAAATTATATATTTACAAATTAATTATATTATATTATATTTTTATTTTTAA
66 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTA-A-----A---TTAA
6973776 TATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAAT
122 -ATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCAT-TGTTAAAATAAAAATAATTAAAT
*
6973841 GCATAAAAATAATTAAATTATATATTTACAAATTAATTAAATTAAATTATAATTTTTTATTTTTA
185 GCATAAAAATAATTAAATTATATA-TTAAAAATTAATTAAATT-AA--AT--TTTTTTATTTTTA
*
6973906 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAATTAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
6973971 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTAAATTAAATTTTTTAT
66 TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTAAATTAAATTTTTTAT
* *
6974036 TTTTAATATTCCAATTTATTAAATAATGCATTTTTAAAATAAAAATAATTAAATGCATAAAACTA
131 TTTTAATATTCCAATTTATTAAATAATGCATTGTTAAAATAAAAATAATTAAATGCATAAAAATA
*
6974101 ATTAAATTATGTATTAAAAATTAATTAAATTAAATTTTTTTATTTTTA
196 ATTAAATTATATATTAAAAATTAATTAAATTAAATTTTTTTATTTTTA
6974149 ATATTTTTTATTTTTAATATTCCAATTTATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAA
6974183 ATAAAAATAA
Statistics
Matches: 269, Mismatches: 8, Indels: 17
0.91 0.03 0.06
Matches are distributed among these distances:
243 47 0.17
245 2 0.01
247 2 0.01
248 17 0.06
249 44 0.16
250 40 0.15
251 4 0.01
254 1 0.00
259 1 0.00
260 111 0.41
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (243 bp):
ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
TGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTAAATTAAATTTTTTAT
TTTTAATATTCCAATTTATTAAATAATGCATTGTTAAAATAAAAATAATTAAATGCATAAAAATA
ATTAAATTATATATTAAAAATTAATTAAATTAAATTTTTTTATTTTTA
Found at i:6974016 original size:5 final size:5
Alignment explanation
Indices: 6974001--6974029 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
6973991 ATATATTTAA
6974001 AAATT -AATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT AAATT
6974030 TTTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AAATT
Found at i:6974108 original size:23 final size:25
Alignment explanation
Indices: 6974082--6974135 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
6974072 AAATAAAAAT
6974082 AATTAAATGCA-T-AAAACTAATTA
1 AATTAAATGCATTAAAAACTAATTA
* *
6974105 AATT--ATGTATTAAAAATTAATTA
1 AATTAAATGCATTAAAAACTAATTA
6974128 AATTAAAT
1 AATTAAAT
6974136 TTTTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 4 0.16
22 1 0.04
23 18 0.72
25 2 0.08
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (25 bp):
AATTAAATGCATTAAAAACTAATTA
Found at i:6974149 original size:16 final size:17
Alignment explanation
Indices: 6974130--6974169 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
6974120 ATTAATTAAA
6974130 TTAAAT-TTTTTTATTT
1 TTAAATATTTTTTATTT
6974146 TT-AATATTTTTTATTT
1 TTAAATATTTTTTATTT
6974162 TT-AATATT
1 TTAAATATT
6974170 CCAATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTAAATATTTTTTATTT
Found at i:6974212 original size:108 final size:108
Alignment explanation
Indices: 6973903--6974198 Score: 346
Period size: 119 Copynumber: 2.6 Consensus size: 108
6973893 TTTTTTATTT
* * *
6973903 TTAATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAATTAATT
1 TTAA-ATTTTTTATTTTTAATATTCCAATTTATTAAATAATCCAT-TTTTAAAATAAAAATAATT
*
6973968 AAATGCATAAAACTAATTAAATTATATATTTAAAAATTAATTAAATTAAATTAAA
64 AAATGCATAAAACTAATT-AA--AT-TATGT----ATTAA--AAATTAAATTAAA
*
6974023 TTAAATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTTTAAAATAAAAATAATTAA
1 TTAAATTTTTTATTTTTAATATTCCAATTTATTAAATAATCCATTTTTAAAATAAAAATAATTAA
6974088 ATGCATAAAACTAATTAAATTATGTATTAAAAATT-AATTAAA
66 ATGCATAAAACTAATTAAATTATGTATTAAAAATTAAATTAAA
*** *
6974130 TTAAATTTTTTTATTTTTAATATTTTTTATTT-TT-AATATTCCAATTTATTAAAATAAAAATAA
1 TTAAA-TTTTTTATTTTTAATA-TTCCAATTTATTAAATAATCC-ATTT-TTAAAATAAAAATAA
6974193 TTAAAT
62 TTAAAT
6974199 TATATATTTA
Statistics
Matches: 164, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
107 18 0.11
108 27 0.16
109 27 0.16
110 5 0.03
114 4 0.02
115 2 0.01
117 2 0.01
118 35 0.21
119 40 0.24
120 4 0.02
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (108 bp):
TTAAATTTTTTATTTTTAATATTCCAATTTATTAAATAATCCATTTTTAAAATAAAAATAATTAA
ATGCATAAAACTAATTAAATTATGTATTAAAAATTAAATTAAA
Found at i:6976074 original size:71 final size:71
Alignment explanation
Indices: 6975946--6976087 Score: 248
Period size: 71 Copynumber: 2.0 Consensus size: 71
6975936 AATTGTGAGG
* * *
6975946 GATTTCTTGCACCTTTTAGAGGCCAACGATATCATTTGAATGAGTGGCGTCAGGGTTATCAACCA
1 GATTTCTTGCACCTTTTAGAGGCCAACGATATCATTTGAATAAGTGGCATCAAGGTTATCAACCA
6976011 AGTACT
66 AGTACT
*
6976017 GATTTCTTGCACCTTTTAGAGGCCAACGATATCATTTGAATAAGTTGCATCAAGGTTATCAACCA
1 GATTTCTTGCACCTTTTAGAGGCCAACGATATCATTTGAATAAGTGGCATCAAGGTTATCAACCA
6976082 AGTACT
66 AGTACT
6976088 CTGCAAGAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (71 bp):
GATTTCTTGCACCTTTTAGAGGCCAACGATATCATTTGAATAAGTGGCATCAAGGTTATCAACCA
AGTACT
Found at i:6976637 original size:49 final size:49
Alignment explanation
Indices: 6976580--6976683 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
6976570 TCATGTGTTA
* * * *
6976580 TAATTTTATACAGTGTTGAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
6976629 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
6976678 TAATTT
1 TAATTT
6976684 GTTTTTTTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:6978163 original size:120 final size:120
Alignment explanation
Indices: 6978036--6978876 Score: 1424
Period size: 120 Copynumber: 7.0 Consensus size: 120
6978026 AAGTAGATTA
6978036 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
6978101 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTT
66 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTT
* *
6978156 TAGATTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
*
6978221 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAATT
66 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTT
6978276 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC---TAAGAATATTTAATATT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
*
6978338 AAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTTAATAATAATTATTT
66 AAGAATTTTATTAAATTATATATTTTTATTAAATTATA-TTTAATAATAATTATTT
* *
6978394 TAAATTATATTTTATAGTGTTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
* * * *
6978459 AAGAATTTTATTAAACTATATATTTTAATTAAATTATATTTAAAAATAATTAATT
66 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTT
*
6978514 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC---TAATAATATTTAATATT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
*
6978576 AAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTT
66 AAGAATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATAATTATTT
* *
6978633 CAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
* * *
6978698 AAGAATTTTATTAAATTATATATTATTATTAAATTATATTTAAAAATAATTAATT
66 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTT
* *
6978753 TAAATTATATTTTATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATAGT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
* *
6978818 AAGAATTTTATTAAATTATATATTTTCATTAAATTATATTTAATAATAATTATGT
66 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTT
6978873 TAAA
1 TAAA
6978877 ATATGATTAA
Statistics
Matches: 677, Mismatches: 35, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
117 105 0.16
118 60 0.09
119 59 0.09
120 349 0.52
121 52 0.08
122 52 0.08
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTT
Found at i:6978456 original size:238 final size:238
Alignment explanation
Indices: 6978036--6978876 Score: 1461
Period size: 238 Copynumber: 3.5 Consensus size: 238
6978026 AAGTAGATTA
6978036 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC--ATAAGAATATTTAATATT
* *
6978101 AAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAGATTATAT
64 AAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATAATTATTTTAAATTATAT
* *
6978166 TTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTA
129 TTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTA
*
6978231 TTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAATT
194 TTAAATTATATATTTTTATTAAATTATATTTAAAAATAATTAATT
6978276 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC-TAAGAATATTTAATATTAA
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATAAGAATATTTAATATTAA
6978340 GAATTTTATTAAATTATATATTTTTACTAAATTATATTTTAATAATAATTATTTTAAATTATATT
66 GAATTTTATTAAATTATATATTTTTACTAAATTATA-TTTAATAATAATTATTTTAAATTATATT
*
6978405 TTATAGTGTTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTAT
130 TTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTAT
* *
6978470 TAAACTATATATTTTAATTAAATTATATTTAAAAATAATTAATT
195 TAAATTATATATTTTTATTAAATTATATTTAAAAATAATTAATT
*
6978514 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC-TAATAATATTTAATATTAA
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATAAGAATATTTAATATTAA
*
6978578 GAATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTCAAATTATAT
66 GAATTTTATTAAATTATATATTTTTACTAAATTATA--TTTAATAATAATTATTTTAAATTATAT
6978643 TTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTA
129 TTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTA
*
6978708 TTAAATTATATATTATTATTAAATTATATTTAAAAATAATTAATT
194 TTAAATTATATATTTTTATTAAATTATATTTAAAAATAATTAATT
* *
6978753 TAAATTATATTTTATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATAGT
1 TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC--ATAAGAATATTTAATATT
* * *
6978818 AAGAATTTTATTAAATTATATATTTTCATTAAATTATATTTAATAATAATTATGTTAAA
64 AAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATAATTATTTTAAA
6978877 ATATGATTAA
Statistics
Matches: 575, Mismatches: 21, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
237 54 0.09
238 229 0.40
239 177 0.31
240 64 0.11
242 51 0.09
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (238 bp):
TAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATAAGAATATTTAATATTAA
GAATTTTATTAAATTATATATTTTTACTAAATTATATTTAATAATAATTATTTTAAATTATATTT
TATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTATT
AAATTATATATTTTTATTAAATTATATTTAAAAATAATTAATT
Found at i:6978499 original size:16 final size:17
Alignment explanation
Indices: 6978463--6978497 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6978453 AATATTAAGA
6978463 ATTTTATTAAACTATAT
1 ATTTTATTAAACTATAT
*
6978480 ATTTTAATTAAATTATAT
1 ATTTT-ATTAAACTATAT
6978498 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAACTATAT
Found at i:6978602 original size:18 final size:17
Alignment explanation
Indices: 6978581--6978618 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
6978571 ATATTAAGAA
*
6978581 TTTTATTAAATTATATAT
1 TTTTACTAAATTATAT-T
6978599 TTTTACTAAATTATATT
1 TTTTACTAAATTATATT
6978616 TTT
1 TTT
6978619 AATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTACTAAATTATATT
Found at i:6978848 original size:18 final size:17
Alignment explanation
Indices: 6978822--6978856 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
6978812 AATAGTAAGA
6978822 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
6978839 ATTTTCATTAAATTATAT
1 ATTTT-ATTAAATTATAT
6978857 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:6979054 original size:44 final size:45
Alignment explanation
Indices: 6979000--6979095 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
6978990 ATTACAACAT
* * *
6979000 CATTCCATTCAACTAAACACA-AGAA-TACTATTATGCCTCTATTC
1 CATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCTATTC
*
6979044 CATTACATTCAACCAAACAATTGAATTACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTATTC
6979089 CATTACA
1 CATTACA
6979096 CCTCTATTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 20 0.43
45 25 0.54
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.32
Consensus pattern (45 bp):
CATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTATTC
Found at i:6979099 original size:16 final size:16
Alignment explanation
Indices: 6979074--6979111 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
6979064 TTGAATTACT
*
6979074 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
6979090 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
6979106 ATTACA
1 ATTACA
6979112 GCGAACTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.26, C:0.34, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:6979207 original size:16 final size:16
Alignment explanation
Indices: 6979183--6979225 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
6979173 ATTTATTTTT
* *
6979183 TTCCTTCTCTTTCTCC
1 TTCCCTCTCTTTATCC
*
6979199 TTCCCTCTCTTTATTC
1 TTCCCTCTCTTTATCC
6979215 -TCCCTCTCTTT
1 TTCCCTCTCTTT
6979226 TTTTCTTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCCCTCTCTTTATCC
Found at i:6979291 original size:15 final size:15
Alignment explanation
Indices: 6979271--6979314 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 15
6979261 CCGCCCTCTC
6979271 CTTCTCTTTCTTCTT
1 CTTCTCTTTCTTCTT
*
6979286 CTTCTCTTCTTTTTTCTT
1 C-T-TC-TCTTTCTTCTT
6979304 CTTCTCTTTCT
1 CTTCTCTTTCT
6979315 CCCTTTCACT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
15 7 0.29
16 3 0.12
17 3 0.12
18 11 0.46
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (15 bp):
CTTCTCTTTCTTCTT
Found at i:6979302 original size:18 final size:18
Alignment explanation
Indices: 6979275--6979311 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
6979265 CCTCTCCTTC
6979275 TCTTTCTTCTTCTTCTCT
1 TCTTTCTTCTTCTTCTCT
*
6979293 TCTTTTTTCTTCTTCTCT
1 TCTTTCTTCTTCTTCTCT
6979311 T
1 T
6979312 TCTCCCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (18 bp):
TCTTTCTTCTTCTTCTCT
Found at i:6984274 original size:48 final size:48
Alignment explanation
Indices: 6984188--6984281 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
6984178 ACCACACAAA
* * *
6984188 AAACTTTTGTATAACATGAAATGAGTCTAACTCGAAATTTCCTGATTT
1 AAACTTTTGTATAACATGAAATGACTCTAACTCAAAATTTCATGATTT
* *
6984236 AAACTTTTGTATAATATGAAATGAACT-TACCTCAAAATTTCATGAT
1 AAACTTTTGTATAACATGAAATG-ACTCTAACTCAAAATTTCATGAT
6984282 GGTTTGGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 38 0.95
49 2 0.05
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (48 bp):
AAACTTTTGTATAACATGAAATGACTCTAACTCAAAATTTCATGATTT
Found at i:6987347 original size:10 final size:10
Alignment explanation
Indices: 6987332--6987356 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6987322 ATTCTTTCTA
6987332 TTGTTCTTTG
1 TTGTTCTTTG
6987342 TTGTTCTTTG
1 TTGTTCTTTG
6987352 TTGTT
1 TTGTT
6987357 ATTCTTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.20, T:0.72
Consensus pattern (10 bp):
TTGTTCTTTG
Found at i:6988847 original size:17 final size:18
Alignment explanation
Indices: 6988817--6988850 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6988807 TACTTAAATT
*
6988817 TTGTCTGTTTTAGAGAAG
1 TTGTCTGTTATAGAGAAG
6988835 TTGT-TGTTATAGAGAA
1 TTGTCTGTTATAGAGAA
6988851 ACAATTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.44
Consensus pattern (18 bp):
TTGTCTGTTATAGAGAAG
Found at i:6995086 original size:5 final size:5
Alignment explanation
Indices: 6995076--6995106 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
6995066 TTATTATTAA
6995076 TATAT TATAT TATAT TATAT TATAT ATATAT
1 TATAT TATAT TATAT TATAT TATAT -TATAT
6995107 ATGACAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:6995183 original size:45 final size:44
Alignment explanation
Indices: 6995117--6995221 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 44
6995107 ATGACAAAGA
6995117 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACA-AAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAAA-AG-GAAGG
* * *
6995163 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAAAAGGAAGG
6995207 AAGGAAAGAAAGAAA
1 AA-GAAAGAAAGAAA
6995222 GAAAAGAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
44 6 0.11
45 39 0.74
46 8 0.15
ACGTcount: A:0.65, C:0.09, G:0.27, T:0.00
Consensus pattern (44 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAAAAGGAAGG
Found at i:6996461 original size:41 final size:39
Alignment explanation
Indices: 6996413--6996524 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 39
6996403 TCGACCTTGA
6996413 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
6996453 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
6996491 GCCGATGAGACACTGGGTGTCAACTATTGCTTCG
1 GTCGATGAGACACTGGGTGTCAACTATTACTTCG
6996525 AACTATCCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 7 0.13
40 2 0.04
41 17 0.31
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:6998990 original size:24 final size:24
Alignment explanation
Indices: 6998963--6999012 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
6998953 AACAGAAAGA
6998963 TCATAAGAGTC-ATAATCGGGAAGC
1 TCATAAGAGTCAATAAT-GGGAAGC
** *
6998987 TCATGCGAGTCAATAATGGGTAGC
1 TCATAAGAGTCAATAATGGGAAGC
6999011 TC
1 TC
6999013 CGAAGAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (24 bp):
TCATAAGAGTCAATAATGGGAAGC
Found at i:6999109 original size:25 final size:26
Alignment explanation
Indices: 6999078--6999147 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
6999068 GCCATATCGA
6999078 GAAGCTCA-AAAAAGCCATTAATCAG
1 GAAGCTCACAAAAAGCCATTAATCAG
* *
6999103 GAAGCTCACAAAGAA-CCTTTAATCAA
1 GAAGCTCACAAA-AAGCCATTAATCAG
* * *
6999129 AAATCTCATAAAAAGCCAT
1 GAAGCTCACAAAAAGCCAT
6999148 ATAACGGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
25 10 0.28
26 24 0.67
27 2 0.06
ACGTcount: A:0.49, C:0.21, G:0.11, T:0.19
Consensus pattern (26 bp):
GAAGCTCACAAAAAGCCATTAATCAG
Found at i:7005667 original size:12 final size:13
Alignment explanation
Indices: 7005650--7005682 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7005640 GTTAAGAAGA
7005650 ATTTAAAATA-TT
1 ATTTAAAATAGTT
7005662 ATTTAAAATAGTT
1 ATTTAAAATAGTT
*
7005675 ATATAAAA
1 ATTTAAAA
7005683 ATACATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
ATTTAAAATAGTT
Found at i:7008331 original size:18 final size:16
Alignment explanation
Indices: 7008295--7008326 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7008285 TTTTATTTAT
7008295 ATATATAAATTAAAAA
1 ATATATAAATTAAAAA
7008311 ATATATAAATTAAAAA
1 ATATATAAATTAAAAA
7008327 TAATACATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATATATAAATTAAAAA
Found at i:7008735 original size:13 final size:11
Alignment explanation
Indices: 7008707--7008738 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
7008697 TATTTCAGTA
7008707 TTCTCTCAAAT
1 TTCTCTCAAAT
7008718 TTCTCTCAAAT
1 TTCTCTCAAAT
*
7008729 TCCTCTCAAA
1 TTCTCTCAAA
7008739 GCTCTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:7009904 original size:7 final size:7
Alignment explanation
Indices: 7009892--7009917 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7009882 TAGTCGATTC
7009892 GTATTTA
1 GTATTTA
7009899 GTATTTA
1 GTATTTA
7009906 GTATTTA
1 GTATTTA
7009913 GTATT
1 GTATT
7009918 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:7010954 original size:20 final size:21
Alignment explanation
Indices: 7010910--7010954 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 21
7010900 ACATTAATTT
7010910 TTATTTTAATATATTTGTACA
1 TTATTTTAATATATTTGTACA
* *
7010931 --ATTTTAA-ATATTTTTATA
1 TTATTTTAATATATTTGTACA
7010949 TTATTT
1 TTATTT
7010955 CATGTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 5
0.74 0.07 0.19
Matches are distributed among these distances:
18 9 0.45
19 7 0.35
20 4 0.20
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
TTATTTTAATATATTTGTACA
Found at i:7012247 original size:193 final size:192
Alignment explanation
Indices: 7011909--7012339 Score: 675
Period size: 193 Copynumber: 2.2 Consensus size: 192
7011899 AAGTAACCCT
* *
7011909 AAACCTCAAACCCTAATTTATTTAATTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATT
1 AAACCTTAAACCCTAATTTATTTATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATT
* * *
7011974 TTTTTAAAAATTTATAATTAATTTACTCAAGTAACTCTAAACCCTAATTTATTTATTTTTTTTCT
66 TTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTATTTAATTTTTTCCT
* * * * *
7012039 TAAAACCCCTAAACACTAAACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAG
131 TAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAATTGATAAATAATTTAATCAAG
* * *
7012101 TAACCTTAAACCCTAATTTATTTGATTTTTTTCTTTAAAACCCTAAACAGTAAACCCTAATCTAA
1 AAACCTTAAACCCTAATTTATTT-A-TTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAA
*
7012166 TTTTTTT-AAAATTTATAATTAATTTACTCAAGTAACCCTAAACTCTAATTTATTTAATTTTTTC
64 TTTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTATTTAATTTTTTC
*
7012230 CTTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAATTGATAAATAATTTAATTAAG
129 CTTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAATTGATAAATAATTTAATCAAG
* *
7012294 AAACCCTAAACCCTTATTTATTTAATTTTTTCCTTAAAACCCTAAA
1 AAACCTTAAACCCTAATTTATTT-ATTTTTTCCTTAAAACCCTAAA
7012340 ACCTAAAACC
Statistics
Matches: 217, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
192 41 0.19
193 133 0.61
194 43 0.20
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (192 bp):
AAACCTTAAACCCTAATTTATTTATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATT
TTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTATTTAATTTTTTCCT
TAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAATTGATAAATAATTTAATCAAG
Found at i:7012350 original size:96 final size:96
Alignment explanation
Indices: 7011916--7012339 Score: 656
Period size: 96 Copynumber: 4.4 Consensus size: 96
7011906 CCTAAACCTC
7011916 AAACCCTAATTTATTTAA-TTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTA
1 AAACCCTAATTTATTTAATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATTTTTTT-
*
7011980 AAAATTTATAATTAATTTACTCAAGTAACTCT
65 AAAATTTATAATTAATTTACTCAAGTAACCCT
* *
7012012 AAACCCTAATTTATTTATTTTTTTTCTTAAAACCCCTAAACACTAAACCCTAATCTAA-TTTTTT
1 AAACCCTAATTTATTTAATTTTTTCCTTAAAA-CCCTAAACACTAAACCCTAATCTAATTTTTTT
*
7012076 AAAATTTATAATTAATTTACTCAAGTAACCTT
65 AAAATTTATAATTAATTTACTCAAGTAACCCT
* * *
7012108 AAACCCTAATTTATTTGATTTTTTTCTTTAAAACCCTAAACAGTAAACCCTAATCTAATTTTTTT
1 AAACCCTAATTTATTT-AATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATTTTTTT
7012173 AAAATTTATAATTAATTTACTCAAGTAACCCT
65 AAAATTTATAATTAATTTACTCAAGTAACCCT
* *
7012205 AAACTCTAATTTATTTAATTTTTTCCTTAAAAACCATAAACACTAAACCCTAATCTAA-TTTTTT
1 AAACCCTAATTTATTTAATTTTTTCCTT-AAAACCCTAAACACTAAACCCTAATCTAATTTTTTT
* * * * *
7012269 AAAATTGATAAATAATTTAATTAAGAAACCCT
65 AAAATTTATAATTAATTTACTCAAGTAACCCT
*
7012301 AAACCCTTATTTATTTAATTTTTTCCTTAAAACCCTAAA
1 AAACCCTAATTTATTTAATTTTTTCCTTAAAACCCTAAA
7012340 ACCTAAAACC
Statistics
Matches: 302, Mismatches: 21, Indels: 11
0.90 0.06 0.03
Matches are distributed among these distances:
95 10 0.03
96 156 0.52
97 111 0.37
98 25 0.08
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (96 bp):
AAACCCTAATTTATTTAATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTA
AAATTTATAATTAATTTACTCAAGTAACCCT
Found at i:7013367 original size:30 final size:30
Alignment explanation
Indices: 7013331--7013394 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
7013321 ATAGTGCCTA
7013331 AAATGATAAAAATATGTAACGATGATATCT
1 AAATGATAAAAATATGTAACGATGATATCT
7013361 AAATGATAAAAATATGTAACGATGATATCT
1 AAATGATAAAAATATGTAACGATGATATCT
7013391 AAAT
1 AAAT
7013395 TACAAACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (30 bp):
AAATGATAAAAATATGTAACGATGATATCT
Found at i:7014538 original size:18 final size:19
Alignment explanation
Indices: 7014491--7014543 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
7014481 ATCTATAAGT
7014491 ATAATTTTATTTTAATGTG
1 ATAATTTTATTTTAATGTG
*
7014510 ATAATAATTATTTT-AT-TG
1 ATAAT-TTTATTTTAATGTG
*
7014528 ATAATGTTTATATTAA
1 ATAAT-TTTATTTTAA
7014544 ATCTTGAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 13 0.46
19 8 0.29
20 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.55
Consensus pattern (19 bp):
ATAATTTTATTTTAATGTG
Found at i:7017376 original size:22 final size:22
Alignment explanation
Indices: 7017348--7017389 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7017338 TATGAAAGAT
*
7017348 AGTCAGG-TGTTAGTTAGTTAGC
1 AGTCAGGCGGTTAG-TAGTTAGC
7017370 AGTCAGGCGGTTAGTAGTTA
1 AGTCAGGCGGTTAGTAGTTA
7017390 TTCTGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.33
Consensus pattern (22 bp):
AGTCAGGCGGTTAGTAGTTAGC
Found at i:7021411 original size:19 final size:20
Alignment explanation
Indices: 7021389--7021428 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
7021379 AAATCTGATT
*
7021389 AATTAGTTAATT-AATTTAA
1 AATTAATTAATTAAATTTAA
7021408 AATTAATTAATTAAATTTAA
1 AATTAATTAATTAAATTTAA
7021428 A
1 A
7021429 GTCCTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
AATTAATTAATTAAATTTAA
Found at i:7022771 original size:35 final size:35
Alignment explanation
Indices: 7022732--7022825 Score: 97
Period size: 35 Copynumber: 2.7 Consensus size: 35
7022722 TACAAGAACT
*
7022732 TTTTTTTAAAACAC-GATAA-TTTTGAAACACAATA
1 TTTTTTGAAAACACGGA-AATTTTTGAAACACAATA
*
7022766 TTTTTTGAAGACACGGAAATTTTTGAAACACAGGA-A
1 TTTTTTGAAAACACGGAAATTTTTGAAACACA--ATA
*
7022802 TTTTTTG-AAACACGAAAAATTTTT
1 TTTTTTGAAAACACG-GAAATTTTT
7022826 AAAAACACGA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
34 14 0.27
35 20 0.39
36 16 0.31
37 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (35 bp):
TTTTTTGAAAACACGGAAATTTTTGAAACACAATA
Found at i:7022789 original size:19 final size:18
Alignment explanation
Indices: 7022733--7022860 Score: 108
Period size: 18 Copynumber: 7.3 Consensus size: 18
7022723 ACAAGAACTT
* *
7022733 TTTTTTAAAACACGATAA
1 TTTTTTGAAACACGAAAA
*
7022751 --TTTTGAAACAC-AATA
1 TTTTTTGAAACACGAAAA
*
7022766 TTTTTTGAAGACACGGAAA
1 TTTTTTGAA-ACACGAAAA
*
7022785 -TTTTTGAAACAC-AGGAA
1 TTTTTTGAAACACGA-AAA
7022802 TTTTTTGAAACACGAAAAA
1 TTTTTTGAAACACG-AAAA
**
7022821 TTTTTAAAAACACGAAAA
1 TTTTTTGAAACACGAAAA
*
7022839 --TTTTGAAACACGAGAA
1 TTTTTTGAAACACGAAAA
7022855 TTTTTT
1 TTTTTT
7022861 TTAAAAGGAC
Statistics
Matches: 87, Mismatches: 13, Indels: 20
0.73 0.11 0.17
Matches are distributed among these distances:
15 2 0.02
16 23 0.26
17 13 0.15
18 32 0.37
19 16 0.18
20 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (18 bp):
TTTTTTGAAACACGAAAA
Found at i:7022814 original size:53 final size:53
Alignment explanation
Indices: 7022735--7022860 Score: 143
Period size: 53 Copynumber: 2.4 Consensus size: 53
7022725 AAGAACTTTT
* * * * * * *
7022735 TTTTAAAACACGATAA--TTTTGAAACAC-AATATTTTTTGAAGACACGGAAAT
1 TTTTGAAACACGAGAATTTTTTGAAACACGAAAAATTTTTAAAAACAC-GAAAA
7022786 TTTTGAAACAC-AGGAATTTTTTGAAACACGAAAAATTTTTAAAAACACGAAAA
1 TTTTGAAACACGA-GAATTTTTTGAAACACGAAAAATTTTTAAAAACACGAAAA
7022839 TTTTGAAACACGAGAATTTTTT
1 TTTTGAAACACGAGAATTTTTT
7022861 TTAAAAGGAC
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
50 1 0.02
51 12 0.19
53 35 0.56
54 15 0.24
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (53 bp):
TTTTGAAACACGAGAATTTTTTGAAACACGAAAAATTTTTAAAAACACGAAAA
Found at i:7022843 original size:35 final size:36
Alignment explanation
Indices: 7022768--7022860 Score: 109
Period size: 35 Copynumber: 2.6 Consensus size: 36
7022758 ACACAATATT
* * **
7022768 TTTTGAAGACACG-GAAATTTTTGAAACACAGGAATT
1 TTTTGAA-ACACGAGAAATTTTTGAAAAACACGAAAA
*
7022804 TTTTGAAACACGAAAAATTTTT-AAAAACACGAAAA
1 TTTTGAAACACGAGAAATTTTTGAAAAACACGAAAA
*
7022839 TTTTGAAACACGAGAATTTTTT
1 TTTTGAAACACGAGAAATTTTT
7022861 TTAAAAGGAC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
35 34 0.69
36 15 0.31
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (36 bp):
TTTTGAAACACGAGAAATTTTTGAAAAACACGAAAA
Found at i:7023388 original size:7 final size:7
Alignment explanation
Indices: 7023378--7023426 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
7023368 TTTTTCTTCC
7023378 CTTTTTT
1 CTTTTTT
*
7023385 C-TTTAT
1 CTTTTTT
*
7023391 -TTTTTC
1 CTTTTTT
7023397 CTTTTCTT
1 CTTTT-TT
7023405 CTTTTTT
1 CTTTTTT
7023412 C-TTTTT
1 CTTTTTT
7023418 CTTTTTT
1 CTTTTTT
7023425 CT
1 CT
7023427 GTTGGGCTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
6 13 0.38
7 15 0.44
8 6 0.18
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (7 bp):
CTTTTTT
Found at i:7023395 original size:13 final size:13
Alignment explanation
Indices: 7023358--7023426 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 13
7023348 GGGCCCCTTC
7023358 TTTT-TTTTTC-T
1 TTTTCTTTTTCTT
**
7023369 TTTTC-TTCCCTT
1 TTTTCTTTTTCTT
*
7023381 TTTTCTTTAT-TT
1 TTTTCTTTTTCTT
*
7023393 TTTCCTTTTCTTCTT
1 TTTTC-TTT-TTCTT
7023408 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
7023421 TTTTCT
1 TTTTCT
7023427 GTTGGGCTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 7 0.16
12 12 0.27
13 16 0.36
14 4 0.09
15 6 0.13
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:7023401 original size:17 final size:17
Alignment explanation
Indices: 7023381--7023421 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7023371 TTCTTCCCTT
7023381 TTTTCTTTATTTTTTCC
1 TTTTCTTTATTTTTTCC
* *
7023398 TTTTC-TTCTTTTTTCT
1 TTTTCTTTATTTTTTCC
7023414 TTTTCTTT
1 TTTTCTTT
7023422 TTTCTGTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTCTTTATTTTTTCC
Found at i:7023401 original size:29 final size:26
Alignment explanation
Indices: 7023355--7023422 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
7023345 CTTGGGCCCC
*
7023355 TTCTTTTTTTTTCTTTTTCTTCCCTTTT
1 TTCTTTTTTTTTCCTTTTCTT--CTTTT
7023383 TTCTTTATTTTTTCCTTTTCTTCTTTT
1 TTCTTT-TTTTTTCCTTTTCTTCTTTT
7023410 TTCTTTTTCTTTT
1 TTCTTTTT-TTTT
7023423 TTCTGTTGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 2 0.05
27 15 0.41
28 6 0.16
29 14 0.38
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.79
Consensus pattern (26 bp):
TTCTTTTTTTTTCCTTTTCTTCTTTT
Found at i:7023425 original size:29 final size:28
Alignment explanation
Indices: 7023355--7023415 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
7023345 CTTGGGCCCC
*
7023355 TTCTTT-TTTTTTCTTTTTCTTCCCTTTT
1 TTCTTTATTTTTTCCTTTTCTT-CCTTTT
7023383 TTCTTTATTTTTTCCTTTTCTT-CTTTT
1 TTCTTTATTTTTTCCTTTTCTTCCTTTT
7023410 TTCTTT
1 TTCTTT
7023416 TTCTTTTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 11 0.35
28 6 0.19
29 14 0.45
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (28 bp):
TTCTTTATTTTTTCCTTTTCTTCCTTTT
Found at i:7023578 original size:14 final size:15
Alignment explanation
Indices: 7023546--7023584 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7023536 GGCTGGCCTG
* *
7023546 TTTTTTCTTTTCTGG
1 TTTTTTCTTTGCTGC
7023561 TTTTTT-TTTGCTGC
1 TTTTTTCTTTGCTGC
7023575 TTTTTTCTTT
1 TTTTTTCTTT
7023585 CTATTGGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.00, C:0.13, G:0.10, T:0.77
Consensus pattern (15 bp):
TTTTTTCTTTGCTGC
Found at i:7023879 original size:7 final size:7
Alignment explanation
Indices: 7023856--7023923 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
7023846 TCTTCCCCTC
7023856 CTTTTTT
1 CTTTTTT
7023863 CTTCTTTT
1 CTT-TTTT
7023871 CTTTTTT
1 CTTTTTT
7023878 C-TTTTT
1 CTTTTTT
*
7023884 ATTTTTT
1 CTTTTTT
** *
7023891 C-GGTTG
1 CTTTTTT
7023897 CTTTTTT
1 CTTTTTT
* *
7023904 ATTATTT
1 CTTTTTT
7023911 CTTTTTCT
1 CTTTTT-T
7023919 CTTTT
1 CTTTT
7023924 GCTTTTTGCT
Statistics
Matches: 45, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
6 8 0.18
7 24 0.53
8 13 0.29
ACGTcount: A:0.04, C:0.15, G:0.04, T:0.76
Consensus pattern (7 bp):
CTTTTTT
Found at i:7023883 original size:13 final size:13
Alignment explanation
Indices: 7023856--7023935 Score: 61
Period size: 13 Copynumber: 5.8 Consensus size: 13
7023846 TCTTCCCCTC
7023856 CTTTTTTCTTCTTTT
1 CTTTTTTC-T-TTTT
7023871 CTTTTTTCTTTTT
1 CTTTTTTCTTTTT
* ** *
7023884 ATTTTTTCGGTTG
1 CTTTTTTCTTTTT
*
7023897 CTTTTTTATTATTT
1 CTTTTTTCTT-TTT
*
7023911 CTTTTTCTCTTTTG
1 CTTTTT-TCTTTTT
*
7023925 CTTTTTGCTTT
1 CTTTTTTCTTT
7023936 GCTTGTTTGG
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
13 23 0.45
14 17 0.33
15 11 0.22
ACGTcount: A:0.04, C:0.15, G:0.06, T:0.75
Consensus pattern (13 bp):
CTTTTTTCTTTTT
Found at i:7023890 original size:20 final size:20
Alignment explanation
Indices: 7023867--7023923 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
7023857 TTTTTTCTTC
7023867 TTTTCTTTTTTCTTTTTATT
1 TTTTCTTTTTTCTTTTTATT
** *
7023887 TTTTC-GGTTGCTTTTTTATT
1 TTTTCTTTTTTC-TTTTTATT
*
7023907 ATTTCTTTTTCTCTTTT
1 TTTTCTTTTT-TCTTTT
7023924 GCTTTTTGCT
Statistics
Matches: 27, Mismatches: 7, Indels: 5
0.69 0.18 0.13
Matches are distributed among these distances:
19 3 0.11
20 17 0.63
21 6 0.22
22 1 0.04
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTTTCTTTTTATT
Found at i:7024312 original size:30 final size:29
Alignment explanation
Indices: 7024278--7024345 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
7024268 GGTAAAAGCA
*
7024278 TAATTTTAGTAAAAA-TATGGGGCCAAAATG
1 TAATTTTAG-AAAAATTA-GAGGCCAAAATG
* *
7024308 TAATTTCTAGAAATATTAGAGGCCCAAATG
1 TAATTT-TAGAAAAATTAGAGGCCAAAATG
7024338 TAATTTTA
1 TAATTTTA
7024346 ATTTTTTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
29 2 0.06
30 26 0.79
31 5 0.15
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (29 bp):
TAATTTTAGAAAAATTAGAGGCCAAAATG
Found at i:7024965 original size:75 final size:76
Alignment explanation
Indices: 7024762--7025532 Score: 824
Period size: 75 Copynumber: 10.1 Consensus size: 76
7024752 AAAACACATA
* * * *
7024762 AAATTAAAAAAATATCTCGGCATGTGACCCGAGGCTCAACTCACCTCTAGTAATATGAGTTGATT
1 AAATT-AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
7024827 TTTTGAAAAAATAA
64 TTTTG-AAAAATAG
* * * * * *
7024841 AAATTGAAAA-ATACCTCGACGTGCGGCCCAAGGCTCAACTCACCTCTCGCATTATGAGTTGATA
1 AAATT-AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-
* *
7024905 TTTGGAAAGA-AG
64 TTTTGAAAAATAG
7024917 AAATT-AAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---
* *
7024981 TTTTTTGAGAAAGA-
63 -TTTTTGAAAAATAG
* * * *
7024995 AAATTTTAAAAAAATACATCGGCGTGTGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGA
1 AAA--TT-AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
7025060 TTTTTGTAAACAA-A-
63 TTTTTG-AAA-AATAG
* *
7025074 AATTTAAAAGAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AAATTAAAAG--ATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
7025138 -TTT-AAAAA-AA
64 TTTTGAAAAATAG
* * *
7025148 AAATTGAAA-ATACCTCAGC--GTGACTCGAGGCTCAACTCACCTCTCGC-ATAATGAGTTGATC
1 AAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT-ATGAGTTGA--
*
7025209 TTTTTGAAAAACAG
63 TTTTTGAAAAATAG
* * * * * * *
7025223 AAATTAAAAAAATACCCCGGCGTGTG-TCTGAAGCTCAACTCATCTCTCGCAATATGAGTTGATT
1 AAATT-AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
7025287 TTTGAAAAACAG
65 TTTGAAAAATAG
* * * *
7025299 AAATT-AAAGATACCTCGGTATATGACCCGAGGCTCGACTCACCTATCGCAATATGAGTTGATTT
1 AAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7025363 TTGAAAAATAG
66 TTGAAAAATAG
*
7025374 AAATT-AAAGATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7025438 TTGAAAAATA-
66 TTGAAAAATAG
* * * * *
7025448 AAATT-AAAGATACCTCGGTATGTGATCAGGGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
1 AAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7025512 TTGAAAAATAG
66 TTGAAAAATAG
7025523 AAATTGAAAA
1 AAATT-AAAA
7025533 ATATAATTCT
Statistics
Matches: 594, Mismatches: 66, Indels: 66
0.82 0.09 0.09
Matches are distributed among these distances:
68 2 0.00
69 35 0.06
71 9 0.02
73 6 0.01
74 102 0.17
75 171 0.29
76 35 0.06
77 18 0.03
78 139 0.23
79 21 0.04
80 4 0.01
82 52 0.09
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (76 bp):
AAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAAATAG
Found at i:7026420 original size:19 final size:19
Alignment explanation
Indices: 7026398--7026449 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
7026388 TAAATTCTTC
7026398 TTTTTTTTGTTTTTTTATT
1 TTTTTTTTGTTTTTTTATT
*
7026417 TTTTGTTTT-ATTTTTTATT
1 TTTT-TTTTGTTTTTTTATT
* *
7026436 TTTTATGTGTTTTT
1 TTTTTTTTGTTTTT
7026450 AGGCATAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 2 0.07
19 21 0.78
20 4 0.15
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (19 bp):
TTTTTTTTGTTTTTTTATT
Found at i:7030005 original size:24 final size:25
Alignment explanation
Indices: 7029969--7030017 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
7029959 ATATACAGAC
*
7029969 GCATATTTTATATATA-ATATACAT
1 GCATATTTAATATATATATATACAT
*
7029993 GCATATTTAATATATATGTATACAT
1 GCATATTTAATATATATATATACAT
7030018 ATATTAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (25 bp):
GCATATTTAATATATATATATACAT
Found at i:7034311 original size:18 final size:18
Alignment explanation
Indices: 7034224--7034363 Score: 89
Period size: 18 Copynumber: 8.1 Consensus size: 18
7034214 TGTGATCCGA
*
7034224 TTGAAATACAAGAATTTT
1 TTGAAACACAAGAATTTT
* * *
7034242 TTTAAA-ACACG-ATAATT
1 TTGAAACACAAGAAT-TTT
*
7034259 TTGAAACACAA-TATTTT
1 TTGAAACACAAGAATTTT
* *
7034276 TTG-AAGAC--GAAATTT
1 TTGAAACACAAGAATTTT
7034291 TTGAAACACAAGAATTTT
1 TTGAAACACAAGAATTTT
* *
7034309 TTGAAACATGAA-AAATTT
1 TTGAAACA-CAAGAATTTT
* **
7034327 TTGAAA-ACACGAAAATT
1 TTGAAACACAAGAATTTT
*
7034344 TTGAAACACGAGAATTTT
1 TTGAAACACAAGAATTTT
7034362 TT
1 TT
7034364 TAAAAGGACG
Statistics
Matches: 92, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
15 7 0.08
16 11 0.12
17 28 0.30
18 44 0.48
19 2 0.02
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.35
Consensus pattern (18 bp):
TTGAAACACAAGAATTTT
Found at i:7034327 original size:17 final size:17
Alignment explanation
Indices: 7034240--7034362 Score: 105
Period size: 16 Copynumber: 7.3 Consensus size: 17
7034230 TACAAGAATT
* *
7034240 TTTTTAAAACACGATAA
1 TTTTTGAAACACGAAAA
*
7034257 -TTTTGAAACAC-AATAT
1 TTTTTGAAACACGAA-AA
*
7034273 TTTTTG-AAGACG-AAA
1 TTTTTGAAACACGAAAA
7034288 TTTTTGAAACAC-AAGAA
1 TTTTTGAAACACGAA-AA
*
7034305 TTTTTTGAAACATGAAAAA
1 -TTTTTGAAACACG-AAAA
7034324 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAAAA
*
7034342 -TTTTGAAACACGAGAA
1 TTTTTGAAACACGAAAA
7034358 TTTTT
1 TTTTT
7034363 TTAAAAGGAC
Statistics
Matches: 86, Mismatches: 9, Indels: 22
0.74 0.08 0.19
Matches are distributed among these distances:
15 8 0.09
16 31 0.36
17 16 0.19
18 21 0.24
19 8 0.09
20 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:7034363 original size:35 final size:35
Alignment explanation
Indices: 7034285--7034368 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
7034275 TTTGAAGACG
** *
7034285 AAATTTTTGAAACACAAGAATTTTTTGAAACATGAA
1 AAATTTTTGAAA-ACAAGAAAATTTTGAAACACGAA
* *
7034321 AAATTTTTGAAAACACGAAAATTTTGAAACACGAG
1 AAATTTTTGAAAACAAGAAAATTTTGAAACACGAA
* *
7034356 AATTTTTTTAAAA
1 AAATTTTTGAAAA
7034369 GGACGTATCG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 29 0.71
36 12 0.29
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.33
Consensus pattern (35 bp):
AAATTTTTGAAAACAAGAAAATTTTGAAACACGAA
Found at i:7034887 original size:17 final size:17
Alignment explanation
Indices: 7034865--7034928 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 17
7034855 CCCCTTCTTT
7034865 TTTTTTCTTTTTCTTCC
1 TTTTTTCTTTTTCTTCC
*
7034882 TTTTTTTCTTTCTTTTTTCC
1 -TTTTTTC-TT-TTTCTTCC
7034902 TTTTCTTC-TTTTCTT-C
1 TTTT-TTCTTTTTCTTCC
7034918 -TTTTTCTTTTT
1 TTTTTTCTTTTT
7034929 TCTGCTGGGC
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 1 0.03
17 5 0.12
18 8 0.20
19 6 0.15
20 10 0.25
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTTCTTTTTCTTCC
Found at i:7034889 original size:12 final size:12
Alignment explanation
Indices: 7034872--7034922 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
7034862 TTTTTTTTTC
*
7034872 TTTTTCTTCCTT
1 TTTTTCTTTCTT
7034884 TTTTTCTTTCTT
1 TTTTTCTTTCTT
*
7034896 TTTTCCTTTTCTT
1 TTTTTC-TTTCTT
*
7034909 CTTTTC-TTCTT
1 TTTTTCTTTCTT
7034920 TTT
1 TTT
7034923 CTTTTTTCTG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
11 7 0.21
12 16 0.48
13 10 0.30
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTCTTTCTT
Found at i:7034892 original size:8 final size:8
Alignment explanation
Indices: 7034864--7034929 Score: 62
Period size: 8 Copynumber: 7.8 Consensus size: 8
7034854 GCCCCTTCTT
7034864 TTTTTTTC
1 TTTTTTTC
7034872 TTTTTCTTCC
1 TTTTT-TT-C
7034882 TTTTTTTC
1 TTTTTTTC
7034890 TTTCTTTT-
1 TTT-TTTTC
*
7034898 TTCCTTTTC
1 TT-TTTTTC
*
7034907 TTCTTTTC
1 TTTTTTTC
7034915 TTCTTTTTC
1 TT-TTTTTC
7034924 TTTTTT
1 TTTTTT
7034930 CTGCTGGGCT
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
8 27 0.54
9 17 0.34
10 6 0.12
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTTC
Found at i:7034905 original size:29 final size:29
Alignment explanation
Indices: 7034859--7034930 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
7034849 CTTGGGCCCC
*
7034859 TTCTTT-TTTTTTCTTTTTCTTCCTTTT-T
1 TTCTTTCTTTTTTCCTTTTCTT-CTTTTCT
7034887 TTCTTTCTTTTTTCCTTTTCTTCTTTTCT
1 TTCTTTCTTTTTTCCTTTTCTTCTTTTCT
*
7034916 TCTTTTTCTTTTTTC
1 T-TCTTTCTTTTTTC
7034931 TGCTGGGCTG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 11 0.28
29 16 0.41
30 12 0.31
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (29 bp):
TTCTTTCTTTTTTCCTTTTCTTCTTTTCT
Found at i:7035250 original size:17 final size:17
Alignment explanation
Indices: 7035228--7035261 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7035218 TCTTTCCCCC
7035228 TTTTTCTTCC-TTCTTCT
1 TTTTTC-TCCTTTCTTCT
7035245 TTTTTCTCCTTTCTTCT
1 TTTTTCTCCTTTCTTCT
7035262 CTTCTCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTCTCCTTTCTTCT
Found at i:7036082 original size:53 final size:53
Alignment explanation
Indices: 7036019--7036125 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
7036009 AAATACGAAA
*
7036019 TTCAGACCGGACAAAATTTAGTGATTACAATATTAATATAATTTTTATATGTC
1 TTCAGACCGGACAAAATTCAGTGATTACAATATTAATATAATTTTTATATGTC
*
7036072 TTCAGACCGGACAAAATTCAGTGATTACAATATTAATATAATTTTTGTATGTC
1 TTCAGACCGGACAAAATTCAGTGATTACAATATTAATATAATTTTTATATGTC
7036125 T
1 T
7036126 ATGAGATATA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (53 bp):
TTCAGACCGGACAAAATTCAGTGATTACAATATTAATATAATTTTTATATGTC
Found at i:7039214 original size:34 final size:33
Alignment explanation
Indices: 7039171--7039253 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
7039161 CATACACATG
* **
7039171 AAAAGATAATATATTATATATAATTTTACATTTT
1 AAAAAATAATATATTATATA-AATTTTACATGCT
*
7039205 AAAAAATAAT-TCATAATATAAATTTTACATGCT
1 AAAAAATAATAT-ATTATATAAATTTTACATGCT
*
7039238 AAGAAATAATAATATT
1 AAAAAATAAT-ATATT
7039254 TAGAATAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
33 21 0.52
34 18 0.45
35 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.40
Consensus pattern (33 bp):
AAAAAATAATATATTATATAAATTTTACATGCT
Found at i:7053774 original size:41 final size:36
Alignment explanation
Indices: 7053723--7053815 Score: 107
Period size: 37 Copynumber: 2.4 Consensus size: 36
7053713 GAATATATGT
*
7053723 GTGGAATTGAATTGAATATATTGACTTGAAAAATGGAAAA
1 GTGGAATTGAATTGAAT-TA-TGA-TTG-AAAATGAAAAA
*
7053763 GT-GAATTTTGAATTGAATTATGATTGAAAGTGAAAAA
1 GTGGAA--TTGAATTGAATTATGATTGAAAATGAAAAA
7053800 GTGGAATTGAATTGAA
1 GTGGAATTGAATTGAA
7053816 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
36 10 0.21
37 11 0.23
38 6 0.12
39 6 0.12
40 4 0.08
41 11 0.23
ACGTcount: A:0.43, C:0.01, G:0.24, T:0.32
Consensus pattern (36 bp):
GTGGAATTGAATTGAATTATGATTGAAAATGAAAAA
Found at i:7053798 original size:36 final size:41
Alignment explanation
Indices: 7053723--7053815 Score: 110
Period size: 36 Copynumber: 2.4 Consensus size: 41
7053713 GAATATATGT
7053723 GTGGAATTGAATTGAATATATTGACTTGAAAAATGG-AAAA
1 GTGGAATTGAATTGAATATATTGACTTGAAAAATGGAAAAA
*
7053763 GT-GAATTTTGAATTGAAT-TA-TGA-TTG-AAAGT-GAAAAA
1 GTGGAA--TTGAATTGAATATATTGACTTGAAAAATGGAAAAA
7053800 GTGGAATTGAATTGAA
1 GTGGAATTGAATTGAA
7053816 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
36 11 0.23
37 10 0.21
38 6 0.12
39 6 0.12
40 4 0.08
41 11 0.23
ACGTcount: A:0.43, C:0.01, G:0.24, T:0.32
Consensus pattern (41 bp):
GTGGAATTGAATTGAATATATTGACTTGAAAAATGGAAAAA
Found at i:7057095 original size:9 final size:9
Alignment explanation
Indices: 7057083--7057146 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 9
7057073 AATAATTATA
7057083 TATATTTTT
1 TATATTTTT
7057092 TATA-TTTT
1 TATATTTTT
*
7057100 TATTTTTTT
1 TATATTTTT
7057109 TAATATTTTT
1 T-ATATTTTT
*
7057119 AAAATATTTTT
1 --TATATTTTT
*
7057130 TTTACTTTTT
1 TATA-TTTTT
7057140 TAT-TTTT
1 TATATTTT
7057147 AAAATAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
8 11 0.25
9 11 0.25
10 14 0.32
11 8 0.18
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (9 bp):
TATATTTTT
Found at i:7058389 original size:20 final size:20
Alignment explanation
Indices: 7058364--7058403 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7058354 CAAAAAATGA
*
7058364 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7058384 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7058404 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7058518 original size:20 final size:20
Alignment explanation
Indices: 7058493--7058566 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
7058483 GAAAAAGTTG
7058493 TTTTTACATATATTAAATTA
1 TTTTTACATATATTAAATTA
* *
7058513 TTTTTACATATATATTAATAAA
1 TTTTTACATATAT-TAAAT-TA
* *
7058535 TTTTT--ATATTTTAAATTG
1 TTTTTACATATATTAAATTA
7058553 TTTTTACATATATT
1 TTTTTACATATATT
7058567 GCAATGATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
18 5 0.12
19 4 0.09
20 24 0.56
21 4 0.09
22 6 0.14
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (20 bp):
TTTTTACATATATTAAATTA
Found at i:7059637 original size:17 final size:15
Alignment explanation
Indices: 7059613--7059655 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 15
7059603 GTGTATATAT
*
7059613 AAAAACAAATGTTTG
1 AAAAACAAATGTTTC
7059628 AATGAAACAAATGTTTC
1 AA--AAACAAATGTTTC
7059645 AAAAACAAATG
1 AAAAACAAATG
7059656 CCATGCCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 11 0.44
17 14 0.56
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.23
Consensus pattern (15 bp):
AAAAACAAATGTTTC
Found at i:7061469 original size:14 final size:14
Alignment explanation
Indices: 7061450--7061479 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7061440 AACAAAACTA
7061450 GCAGAGAAGATGAG
1 GCAGAGAAGATGAG
*
7061464 GCAGAGATGATGAG
1 GCAGAGAAGATGAG
7061478 GC
1 GC
7061480 TGCAATCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.10, G:0.43, T:0.10
Consensus pattern (14 bp):
GCAGAGAAGATGAG
Found at i:7061537 original size:24 final size:24
Alignment explanation
Indices: 7061502--7061547 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
7061492 GGTGAAGAGA
*
7061502 GTGAAGAGAGGAGCTGTGGAAAGG
1 GTGAAGAAAGGAGCTGTGGAAAGG
7061526 GTGAAGAAAGGAGCTGTGGAAA
1 GTGAAGAAAGGAGCTGTGGAAA
7061548 TGGTTTCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.04, G:0.46, T:0.13
Consensus pattern (24 bp):
GTGAAGAAAGGAGCTGTGGAAAGG
Found at i:7065481 original size:42 final size:42
Alignment explanation
Indices: 7065434--7065533 Score: 110
Period size: 42 Copynumber: 2.4 Consensus size: 42
7065424 GTGTCCTCAC
* * * * * * *
7065434 CCGTGTAACTCACTGAGTAGGGTCACATGGCCGTGTGCTAGG
1 CCGTGTAACTCACTAAGTAGCGCCACACGCCCATGTGCCAGG
* *
7065476 CCGTGTAACTCTCTAAGTTGCGCCACACGCCCATGTGCCAGG
1 CCGTGTAACTCACTAAGTAGCGCCACACGCCCATGTGCCAGG
*
7065518 CCGTGTAACTCTCTAA
1 CCGTGTAACTCACTAA
7065534 ATTGAACCCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (42 bp):
CCGTGTAACTCACTAAGTAGCGCCACACGCCCATGTGCCAGG
Found at i:7066585 original size:13 final size:13
Alignment explanation
Indices: 7066567--7066592 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7066557 ATATAACACC
7066567 ATCAAACTCATAA
1 ATCAAACTCATAA
7066580 ATCAAACTCATAA
1 ATCAAACTCATAA
7066593 GTTAGTATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
ATCAAACTCATAA
Found at i:7077571 original size:99 final size:98
Alignment explanation
Indices: 7077410--7077597 Score: 304
Period size: 99 Copynumber: 1.9 Consensus size: 98
7077400 TTTAAAGCTT
* * *
7077410 GCTGATTTATGATCACAGCTTTAGTTCATTGATTTATGATCATGAACAATTCATTAAGAGTTCGC
1 GCTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
*
7077475 CGATTTACGATCGCAACTATCATTTTTAACTCTC
66 CAATTTACGATCGCAACT-TCATTTTTAACTCTC
*
7077509 GCTGATTTATGATCACAACTTCAGTTTATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
1 GCTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
* *
7077574 CAATTTATGATCGTAACTTCATTT
66 CAATTTACGATCGCAACTTCATTT
7077598 AAACATTTTG
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
98 6 0.07
99 76 0.93
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (98 bp):
GCTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
CAATTTACGATCGCAACTTCATTTTTAACTCTC
Found at i:7077675 original size:134 final size:134
Alignment explanation
Indices: 7077494--7078160 Score: 646
Period size: 134 Copynumber: 5.1 Consensus size: 134
7077484 ATCGCAACTA
** * *
7077494 TCATTTTTAACTCTCGCTGATTTATGATCACAACTTCAGTTTATTGATTTACGATCATGAACAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * *
7077559 TCATTAAGAGTTCGCCAATTTATGATCGTAACTTCATTTAAACATTTTGCTAATTTATGATTAAA
66 TCATTAAGAGTTCGCCAATTTATGATCGCAACTTCATTTAAATAGTTTGCTAATTTACGATTACA
*
7077624 ACTG
131 ATTG
* * * * *
7077628 CCATTTTTAAAGCTCGTTGATTTACGACCACAACTTTAGTTCATTGATTTACGATCATGAATAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * * * *
7077693 TTATTAAGAGCTCGCCGATTTATGATCACAAC-TCTATTTAAACAGTTTGCTAATTTACGATCAT
66 TCATTAAGAGTTCGCCAATTTATGATCGCAACTTC-ATTTAAATAGTTTGCTAATTTACGATTAC
7077757 AATTG
130 AATTG
** * * * *
7077762 TCATTTTTAAAGCTCACTGATTTATAATCACAACTTCAATTCATTGATTTATGATTATGAACAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * * * *
7077827 TCATTAAGAGTTCGTCGATTTACGATTGCAACTCCTTTTAAATAATTTGCTAATTTACGATTACA
66 TCATTAAGAGTTCGCCAATTTATGATCGCAACTTCATTTAAATAGTTTGCTAATTTACGATTACA
* *
7077892 ACTA
131 ATTG
* * * *
7077896 TCATTTTTTAAGCTTGTTGATTTATG------A-TT-AG-----TG-CTTACGATCATGAATAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* ** * * *
7077947 TCATTAAGATTTC-ATAGATTTATGATCGCAACTTCATTTAAATAGTTTGCTGATTTACGATCAT
66 TCATTAAGAGTTCGCCA-ATTTATGATCGCAACTTCATTTAAATAGTTTGCTAATTTACGATTAC
* *
7078011 ATTTA
130 AATTG
* * * *
7078016 TCATTTTTAAAGCTCGTTGATTTACGATCACAGCTTCAGTTCATTTATTTATGATCATGAACAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * * * * * *
7078081 TCATTAAGAGTTTGTCATTTTACGATCGCAACTCCATTTAAATAGTTCGTTGATTTATGATTACA
66 TCATTAAGAGTTCGCCAATTTATGATCGCAACTTCATTTAAATAGTTTGCTAATTTACGATTACA
7078146 ATTG
131 ATTG
7078150 TCATTTTTAAA
1 TCATTTTTAAA
7078161 ACTGGCTGGT
Statistics
Matches: 425, Mismatches: 90, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
120 91 0.21
121 2 0.00
126 1 0.00
127 4 0.01
128 3 0.01
133 3 0.01
134 319 0.75
135 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (134 bp):
TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
TCATTAAGAGTTCGCCAATTTATGATCGCAACTTCATTTAAATAGTTTGCTAATTTACGATTACA
ATTG
Found at i:7077723 original size:63 final size:61
Alignment explanation
Indices: 7077630--7077827 Score: 137
Period size: 71 Copynumber: 3.0 Consensus size: 61
7077620 TAAAACTGCC
** * * *
7077630 ATTTTTAAAGCTCGTTGATTTACGACCACAACTTTAGTTCATTGATTTACGATCATGAATA
1 ATTTTTAAAGCTCGCCGATTTATGATCACAACTTTAATTCATTGATTTACGATCATGAATA
* *
7077691 ATTTATTAAGAGCTCGCCGATTTATGATCACAACTCTATTTAAACAGTTTGCTAATTTACGATCA
1 ATTT-TTAA-AGCTCGCCGATTTATGATCACAACTTTAATT---CA--TTG---ATTTACGATCA
*
7077756 T-AATTGTC
56 TGAA---TA
* * * * * * *
7077764 ATTTTTAAAGCTCACTGATTTATAATCACAACTTCAATTCATTGATTTATGATTATGAACA
1 ATTTTTAAAGCTCGCCGATTTATGATCACAACTTTAATTCATTGATTTACGATCATGAATA
7077825 ATT
1 ATT
7077828 CATTAAGAGT
Statistics
Matches: 106, Mismatches: 17, Indels: 28
0.70 0.11 0.19
Matches are distributed among these distances:
61 7 0.07
62 4 0.04
63 35 0.33
64 2 0.02
66 5 0.05
68 5 0.05
70 2 0.02
71 37 0.35
72 4 0.04
73 5 0.05
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (61 bp):
ATTTTTAAAGCTCGCCGATTTATGATCACAACTTTAATTCATTGATTTACGATCATGAATA
Found at i:7078035 original size:120 final size:120
Alignment explanation
Indices: 7077818--7078039 Score: 300
Period size: 120 Copynumber: 1.9 Consensus size: 120
7077808 ATTTATGATT
* * * *
7077818 ATGAACAATTCATTAAGAGTTCGTCGATTTACGATTGCAACTCCTTTTAAATAATTTGCTAATTT
1 ATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAATAATTTGCTAATTT
* * *
7077883 ACGATTACAACTATCATTTTTTAAGCTTGTTGATTTATGATTAGTGCTTACGATC
66 ACGATCACAACTATCATTTTTAAAGCTCGTTGATTTATGATTAGTGCTTACGATC
* * * * * *
7077938 ATGAATAATTCATTAAGATTTCATAGATTTATGATCGCAACTTCATTTAAATAGTTTGCTGATTT
1 ATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAATAATTTGCTAATTT
* **
7078003 ACGATCATATTTATCATTTTTAAAGCTCGTTGATTTA
66 ACGATCACAACTATCATTTTTAAAGCTCGTTGATTTA
7078040 CGATCACAGC
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
120 86 1.00
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.43
Consensus pattern (120 bp):
ATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAATAATTTGCTAATTT
ACGATCACAACTATCATTTTTAAAGCTCGTTGATTTATGATTAGTGCTTACGATC
Found at i:7078286 original size:107 final size:107
Alignment explanation
Indices: 7078062--7078286 Score: 326
Period size: 107 Copynumber: 2.1 Consensus size: 107
7078052 CAGTTCATTT
* * *
7078062 ATTTATGATCATGAACAATTCATTAAGAGTTTGTCATTTTACGATCGCAACTCCATTTAAATAGT
1 ATTTATGATCATGAACAATTCATTAAGAGTTCGTCATTTTACGACCACAACTCCATTTAAATAGT
* * *
7078127 TCGTTGATTTATGATTACAATTGTCATTTTTAAAACTGGCTG
66 TCGTTGATTTACGATCACAATTGACATTTTTAAAACTGGCTG
* * *
7078169 GTTTACGATCATGAACAATTCATTAAGAGTTCGTCGA-TTTACGACCACAATTCCATTTAAATAG
1 ATTTATGATCATGAACAATTCATTAAGAGTTCGTC-ATTTTACGACCACAACTCCATTTAAATAG
** *
7078233 TTCGTTGATTTACGATCACAATTGACATTTTTAATGCTTGCTG
65 TTCGTTGATTTACGATCACAATTGACATTTTTAAAACTGGCTG
7078276 ATTTATGATCA
1 ATTTATGATCA
7078287 CAGTTTCAGT
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
107 102 0.99
108 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (107 bp):
ATTTATGATCATGAACAATTCATTAAGAGTTCGTCATTTTACGACCACAACTCCATTTAAATAGT
TCGTTGATTTACGATCACAATTGACATTTTTAAAACTGGCTG
Found at i:7092555 original size:98 final size:98
Alignment explanation
Indices: 7092386--7092582 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
7092376 GTGCAATAAA
7092386 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
* *
7092451 CCTCTAAAATCCCAAACTTGGAATATTTCTTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
7092484 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
*
7092549 CCTCTAAAATCTCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
7092582 A
1 A
7092583 TTATTTTTAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:7094799 original size:132 final size:131
Alignment explanation
Indices: 7094631--7095513 Score: 1322
Period size: 132 Copynumber: 6.8 Consensus size: 131
7094621 AGACTTGTAG
* * *
7094631 CTTCAACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCTACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * *
7094696 CTTAGAAAGAGAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7094761 AT
130 AT
* *
7094763 CTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * * *
7094828 CTTGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7094893 AT
130 AT
*
7094895 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * *
7094960 CTTGGAAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTGTTTAGGGAGATAAGATCT--A
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
7095023 -
131 T
* *
7095023 --T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* *
7095085 CTTGGAAAGATAAGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7095150 AT
130 AT
* *
7095152 CTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * * * *
7095217 CTTGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCCATA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7095282 AT
130 AT
* *
7095284 CTTCAACCTTCTCTGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* *
7095349 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCT--A
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
7095412 -
131 T
* *
7095412 --T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTAAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
*
7095474 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
7095514 GTAAATTCAG
Statistics
Matches: 680, Mismatches: 64, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
125 210 0.31
126 2 0.00
128 1 0.00
129 2 0.00
131 1 0.00
132 464 0.68
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
T
Found at i:7095155 original size:257 final size:258
Alignment explanation
Indices: 7094631--7095513 Score: 1280
Period size: 257 Copynumber: 3.4 Consensus size: 258
7094621 AGACTTGTAG
* * *
7094631 CTTCAACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCTACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* *
7094696 CTTAGAAAGAGAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT--A
* *
7094761 ATCTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACT
129 A--TTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
* * * * *
7094826 ATCTTGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTA
192 ATCTTGGAAAGATAAGATTCCT-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA
7094891 TAAT
256 -AAT
*
7094895 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * *
7094960 CTTGGAAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTGTTTAGGGAGATAAGATCT-A-
66 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAT
* *
7095023 T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCT
131 TCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCT
7095087 TGGAAAGATAAGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
196 TGGAAAGATAAGATTC-CTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-AAT
* *
7095152 CTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* ** * * *
7095217 CTTGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCCATA
66 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-C-TA
* *
7095282 ATCTTCAACCTTCTCTGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
129 A--TTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
** *
7095347 ATCTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCT-
192 ATCTTGGAAAGATAAGATTC-CTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA
7095411 -A-
256 AAT
* *
7095412 --T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTAAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
7095474 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
66 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
7095514 GTAAATTCAG
Statistics
Matches: 562, Mismatches: 49, Indels: 23
0.89 0.08 0.04
Matches are distributed among these distances:
257 321 0.57
258 4 0.01
259 1 0.00
260 1 0.00
261 2 0.00
263 1 0.00
264 232 0.41
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (258 bp):
CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAT
TCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCT
TGGAAAGATAAGATTCCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAAT
Found at i:7095352 original size:389 final size:389
Alignment explanation
Indices: 7094635--7095513 Score: 1659
Period size: 389 Copynumber: 2.3 Consensus size: 389
7094625 TTGTAGCTTC
* * * *
7094635 AACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCTACTATCTTA
1 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
*
7094700 GAAAGAGAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
66 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
7094765 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
131 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
*
7094830 TGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
196 TGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCCATAAT
7094895 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
261 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
7094960 CTTGGAAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTGTTTAGGGAGATAAGATCTAT
326 CTTGGAAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTGTTTAGGGAGATAAGATCTAT
7095024 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
1 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
*
7095089 GAAAGATAAGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
66 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
7095154 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
131 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
7095219 TGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCCATAAT
196 TGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCCATAAT
*
7095284 CTTCAACCTTCTCTGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
261 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
*
7095349 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTAT
326 CTTGGAAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTGTTTAGGGAGATAAGATCTAT
**
7095413 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTAAAATCTGCTTCCCACTATCTTG
1 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
7095478 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
66 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
7095514 GTAAATTCAG
Statistics
Matches: 478, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
389 478 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (389 bp):
AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
TGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCCATAAT
CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
CTTGGAAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTGTTTAGGGAGATAAGATCTAT
Found at i:7106823 original size:98 final size:98
Alignment explanation
Indices: 7106654--7106850 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
7106644 GTGCAATAAA
7106654 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
*
7106719 CCTCTAAAATCCCAAACTTGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
7106752 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
7106817 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
7106850 A
1 A
7106851 TTATTTTAAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:7107748 original size:29 final size:31
Alignment explanation
Indices: 7107669--7107767 Score: 98
Period size: 30 Copynumber: 3.3 Consensus size: 31
7107659 AAGCTTTTCT
* * *
7107669 AAAATTACAT-TTCAAACCCTAAACTTTCTC
1 AAAATTACATCTTCGACCCCTAAACTTTCAC
*
7107699 AAAATTACA-CTTCGACCCCTAAACTTTCAA
1 AAAATTACATCTTCGACCCCTAAACTTTCAC
* * * *
7107729 AAAATTACATCTT-G-GCCCTATATTTTCCC
1 AAAATTACATCTTCGACCCCTAAACTTTCAC
7107758 AAAATTACAT
1 AAAATTACAT
7107768 TTTTACCCTA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
29 20 0.34
30 35 0.60
31 3 0.05
ACGTcount: A:0.38, C:0.26, G:0.03, T:0.32
Consensus pattern (31 bp):
AAAATTACATCTTCGACCCCTAAACTTTCAC
Found at i:7108326 original size:21 final size:19
Alignment explanation
Indices: 7108284--7108340 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
7108274 AAAGAAATAG
7108284 AAGAGAA-AGAAAAGAGAGGA
1 AAGAGAAGAGAAAAG-G-GGA
*
7108304 AAGGGAAGGAGAGAAAGGGGA
1 AAGAGAA-GAGA-AAAGGGGA
7108325 AAGAGAAGAGAAAAGG
1 AAGAGAAGAGAAAAGG
7108341 AAAAGAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 5 0.16
20 10 0.31
21 9 0.28
22 4 0.12
23 4 0.12
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (19 bp):
AAGAGAAGAGAAAAGGGGA
Found at i:7108335 original size:46 final size:48
Alignment explanation
Indices: 7108277--7108367 Score: 118
Period size: 48 Copynumber: 1.9 Consensus size: 48
7108267 GCCGAGAAAA
* *
7108277 GAAATAGAAGAG-AAA-GAAAAGAGAGGAAA-G-GGAAGGAGAGAAAGGG
1 GAAAGAGAAGAGAAAAGGAAAAGA-AGAAAAGGAGGAAGGA-AGAAAGGG
7108323 GAAAGAGAAGAGAAAAGGAAAAGAAGAAAAGGAGGAAGGAAGAAA
1 GAAAGAGAAGAGAAAAGGAAAAGAAGAAAAGGAGGAAGGAAGAAA
7108368 ATAATAAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
46 11 0.28
47 8 0.21
48 13 0.33
49 7 0.18
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.01
Consensus pattern (48 bp):
GAAAGAGAAGAGAAAAGGAAAAGAAGAAAAGGAGGAAGGAAGAAAGGG
Found at i:7108352 original size:14 final size:15
Alignment explanation
Indices: 7108270--7108355 Score: 63
Period size: 15 Copynumber: 5.7 Consensus size: 15
7108260 TGGGGTTGCC
7108270 GAGAAAA-GAAATAGA
1 GAGAAAAGGAAA-AGA
7108285 -AGAGAAA-GAAAAGA
1 GAGA-AAAGGAAAAGA
* * *
7108299 GAGGAAAGGGAAGGA
1 GAGAAAAGGAAAAGA
*
7108314 GAGAAAGGGGAAAGAGAA
1 GAGAAA-AGGAAA-AG-A
7108332 GAGAAAAGGAAAAGA
1 GAGAAAAGGAAAAGA
7108347 -AGAAAAGGA
1 GAGAAAAGGA
7108356 GGAAGGAAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
14 18 0.32
15 20 0.35
16 6 0.11
17 6 0.11
18 7 0.12
ACGTcount: A:0.62, C:0.00, G:0.37, T:0.01
Consensus pattern (15 bp):
GAGAAAAGGAAAAGA
Found at i:7108365 original size:19 final size:20
Alignment explanation
Indices: 7108307--7108366 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 20
7108297 GAGAGGAAAG
*
7108307 GGAAGGAGAGAAAGG-GGAA
1 GGAAGAAGAGAAAGGAGGAA
*
7108326 AG-AGAAGAGAAA--AGGAA
1 GGAAGAAGAGAAAGGAGGAA
7108343 --AAGAAGA-AAAGGAGGAA
1 GGAAGAAGAGAAAGGAGGAA
7108360 GGAAGAA
1 GGAAGAA
7108367 AATAATAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 3 0.09
16 6 0.18
17 9 0.27
18 9 0.27
19 6 0.18
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (20 bp):
GGAAGAAGAGAAAGGAGGAA
Found at i:7109288 original size:21 final size:21
Alignment explanation
Indices: 7109264--7109328 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
7109254 CTTCGTGTTT
*
7109264 AAAAAATTTCCATGTTTTCAA
1 AAAAAATTTCCGTGTTTTCAA
7109285 AAAAAATTTCCGTG-TTTCAA
1 AAAAAATTTCCGTGTTTTCAA
*
7109305 AAAAAA-ATCCTGTGTTTTCAA
1 AAAAAATTTCC-GTGTTTTCAA
7109326 AAA
1 AAA
7109329 TTTTAGTGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.08
20 15 0.38
21 22 0.55
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (21 bp):
AAAAAATTTCCGTGTTTTCAA
Found at i:7109368 original size:20 final size:20
Alignment explanation
Indices: 7109264--7109370 Score: 73
Period size: 20 Copynumber: 5.5 Consensus size: 20
7109254 CTTCGTGTTT
*
7109264 AAAAAATTTCCATGTTTTCAA
1 AAAAAATTTCCGTGTTTT-AA
*
7109285 AAAAAATTTCCGTGTTTCAA
1 AAAAAATTTCCGTGTTTTAA
*
7109305 AAAAAA-ATCCTGTGTTTT--
1 AAAAAATTTCC-GTGTTTTAA
* ** *
7109323 CAAAAATTTTAGTGTCTT--
1 AAAAAATTTCCGTGTTTTAA
* *
7109341 -AGAAATTTTCGTGTTTTAA
1 AAAAAATTTCCGTGTTTTAA
7109360 AAAAAATTTCC
1 AAAAAATTTCC
7109371 TCGTATTTCA
Statistics
Matches: 67, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
17 14 0.21
18 11 0.16
19 4 0.06
20 22 0.33
21 16 0.24
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (20 bp):
AAAAAATTTCCGTGTTTTAA
Found at i:7109414 original size:18 final size:18
Alignment explanation
Indices: 7109393--7109449 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
7109383 AATTTTCGAC
*
7109393 TTTTCGCGTTTTCAAAAT
1 TTTTCGTGTTTTCAAAAT
* *
7109411 TTTTCGTGTTTTAAAAAA
1 TTTTCGTGTTTTCAAAAT
*
7109429 TTCTCGTG-TTTCACAAAT
1 TTTTCGTGTTTTCA-AAAT
7109447 TTT
1 TTT
7109450 CGTATCATCA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAT
Found at i:7109463 original size:36 final size:36
Alignment explanation
Indices: 7109423--7109508 Score: 85
Period size: 36 Copynumber: 2.5 Consensus size: 36
7109413 TTCGTGTTTT
*
7109423 AAAAAATTCTCGTGTTTCACA-AATTTTCGTATCATCAA
1 AAAAAATTCTCGTGTTTCA-AGAATTTTCGT-GCATC-A
*
7109461 AAAAAATT-TCG-GTTTCAAGAATTTTCGTGCTTC-
1 AAAAAATTCTCGTGTTTCAAGAATTTTCGTGCATCA
7109494 --AAAATTCTCGTGTTT
1 AAAAAATTCTCGTGTTT
7109509 TAAAAAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
31 6 0.14
32 3 0.07
33 4 0.09
35 4 0.09
36 15 0.35
37 3 0.07
38 8 0.19
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.40
Consensus pattern (36 bp):
AAAAAATTCTCGTGTTTCAAGAATTTTCGTGCATCA
Found at i:7109513 original size:16 final size:15
Alignment explanation
Indices: 7109463--7109513 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
7109453 ATCATCAAAA
7109463 AAAATTTCG-GTTTC
1 AAAATTTCGTGTTTC
*
7109477 AAGAATTTTCGTGCTTC
1 AA-AA-TTTCGTGTTTC
*
7109494 AAAATTCTCGTGTTTT
1 AAAATT-TCGTGTTTC
7109510 AAAA
1 AAAA
7109514 AAATTCTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.07
15 4 0.13
16 18 0.60
17 6 0.20
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (15 bp):
AAAATTTCGTGTTTC
Found at i:7114179 original size:54 final size:54
Alignment explanation
Indices: 7114082--7114184 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
7114072 CTTGTTGAGC
* * * *
7114082 AAGAGTGATCTTGTTTAGAGGGAGGTTGAACTATAATGGATTAACTTTTTGGAA
1 AAGAGTGATCATGTTTAGAGGGAGGTGGAACTACAATGAATTAACTTTTTGGAA
*
7114136 AAGAGTGATCATGTTTAGAGTGAGGTGGAAGC-ACAATGAATTAACTTTT
1 AAGAGTGATCATGTTTAGAGGGAGGTGGAA-CTACAATGAATTAACTTTT
7114185 AGGCAATAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 42 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (54 bp):
AAGAGTGATCATGTTTAGAGGGAGGTGGAACTACAATGAATTAACTTTTTGGAA
Done.