Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 27 of 170
Found at i:7118865 original size:31 final size:29
Alignment explanation
Indices: 7118827--7118900 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 29
7118817 CTAACAATTT
7118827 AGTGACTAAAATGTTATAACATGAT-AACATA
1 AGTGACTAAAATG-T-TAACAT-ATAAACATA
* *
7118858 AGTGACTAAAACG-TAACATTTCAAACATA
1 AGTGACTAAAATGTTAACATAT-AAACATA
7118887 AGTGACTAAAATGT
1 AGTGACTAAAATGT
7118901 AATCTGAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 1 0.03
28 6 0.16
29 18 0.49
31 12 0.32
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (29 bp):
AGTGACTAAAATGTTAACATATAAACATA
Found at i:7121511 original size:27 final size:27
Alignment explanation
Indices: 7121425--7121513 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 27
7121415 AATTAAACTT
*
7121425 AAAAAAATTTAGGTACCAAATTAAGAA
1 AAAAAAATTTAAGTACCAAATTAAGAA
* * * *
7121452 AAAGTACCAAGTTCAAGTACTAAATTGAGAA
1 AAA--A--AAATTTAAGTACCAAATTAAGAA
*
7121483 AAAAAAATTTAAATACCAAATTAAGAA
1 AAAAAAATTTAAGTACCAAATTAAGAA
7121510 AAAA
1 AAAA
7121514 TATAAAATTT
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
27 25 0.52
29 2 0.04
31 21 0.44
ACGTcount: A:0.60, C:0.09, G:0.10, T:0.21
Consensus pattern (27 bp):
AAAAAAATTTAAGTACCAAATTAAGAA
Found at i:7121528 original size:58 final size:58
Alignment explanation
Indices: 7121425--7121536 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
7121415 AATTAAACTT
** * * *
7121425 AAAAAAATTTAGGTACCAAATTAAGAAAAAGTACCAAGTTCAAGTACTAAATTGAGAA
1 AAAAAAATTTAAATACCAAATTAAGAAAAAATACAAAATTCAAGTACTAAATTGAGAA
* * *
7121483 AAAAAAATTTAAATACCAAATTAAGAAAAAATATAAAATTTAAGTATTAAATTG
1 AAAAAAATTTAAATACCAAATTAAGAAAAAATACAAAATTCAAGTACTAAATTG
7121537 GATCAAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 46 1.00
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.26
Consensus pattern (58 bp):
AAAAAAATTTAAATACCAAATTAAGAAAAAATACAAAATTCAAGTACTAAATTGAGAA
Found at i:7133343 original size:24 final size:24
Alignment explanation
Indices: 7133297--7133344 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7133287 ACCCAGATAC
* *
7133297 ATTGGCATTGATATGAGCTTCGGT
1 ATTGGCATTGATACGAGCATCGGT
7133321 ATTGGCATTGATGACGA-CATCGGT
1 ATTGGCATTGAT-ACGAGCATCGGT
7133345 GTCACTATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (24 bp):
ATTGGCATTGATACGAGCATCGGT
Found at i:7136966 original size:29 final size:28
Alignment explanation
Indices: 7136934--7137022 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 28
7136924 CCAAACTCAT
*
7136934 AACTCATAA-CTTCGAACCCTTGAACTTTA
1 AACTCA-AACCTT-GAACCCTTGAACTCTA
*
7136963 AACTCAAACCCTTGAACCTTTGAACTCTA
1 AACTCAAA-CCTTGAACCCTTGAACTCTA
* * * *
7136992 AACTCAAATCTTAAACCC-CGAACCCTA
1 AACTCAAACCTTGAACCCTTGAACTCTA
7137019 AACT
1 AACT
7137023 TTAAATCCCA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 11 0.22
28 9 0.18
29 28 0.55
30 3 0.06
ACGTcount: A:0.37, C:0.31, G:0.06, T:0.26
Consensus pattern (28 bp):
AACTCAAACCTTGAACCCTTGAACTCTA
Found at i:7136974 original size:21 final size:23
Alignment explanation
Indices: 7136948--7136994 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
7136938 CATAACTTCG
7136948 AACCCTTGAA-CTTTAAACTC-A
1 AACCCTTGAACCTTTAAACTCTA
*
7136969 AACCCTTGAACCTTTGAACTCTA
1 AACCCTTGAACCTTTAAACTCTA
7136992 AAC
1 AAC
7136995 TCAAATCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.43
22 9 0.39
23 4 0.17
ACGTcount: A:0.36, C:0.30, G:0.06, T:0.28
Consensus pattern (23 bp):
AACCCTTGAACCTTTAAACTCTA
Found at i:7139405 original size:63 final size:64
Alignment explanation
Indices: 7139333--7139463 Score: 228
Period size: 64 Copynumber: 2.1 Consensus size: 64
7139323 ACACTTTAAT
* *
7139333 TTTATTTAGTTATGTTTTAAAA-TTTATATTTTTCCATTCTTTGATTGGTTGAGCATATAAATA
1 TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATA
*
7139396 TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATC
1 TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATA
7139460 TTTA
1 TTTA
7139464 CGAGGGCACT
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
63 22 0.34
64 42 0.66
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.54
Consensus pattern (64 bp):
TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATA
Found at i:7139541 original size:30 final size:30
Alignment explanation
Indices: 7139465--7139542 Score: 90
Period size: 28 Copynumber: 2.7 Consensus size: 30
7139455 AAATCTTTAC
* * *
7139465 GAGGGCACTAAATCAAATAAGATTTTATAT
1 GAGGACACTAAATCAAATATGAATTTATAT
*
7139495 GAGGACAC--AATTAAATATGAATTTATAT
1 GAGGACACTAAATCAAATATGAATTTATAT
7139523 -ATGGACACTAAATCAAATAT
1 GA-GGACACTAAATCAAATAT
7139543 AGATTAAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 23 0.57
30 16 0.40
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.29
Consensus pattern (30 bp):
GAGGACACTAAATCAAATATGAATTTATAT
Found at i:7149424 original size:222 final size:222
Alignment explanation
Indices: 7149038--7149484 Score: 867
Period size: 222 Copynumber: 2.0 Consensus size: 222
7149028 ATTAGTGTAA
7149038 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
1 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
* *
7149103 CTCAAGATTGTAAGTATGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
66 CTCAAGATTGTAAATAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
7149168 CCTTACCGTCTTGCATAAGCACACATCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
131 CCTTACCGTCTTGCATAAGCACACATCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
*
7149233 TCCCGACCCAATTTCTGTTGAACTAAG
196 TCCCGACCCAATTTCGGTTGAACTAAG
7149260 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
1 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
7149325 CTCAAGATTGTAAATAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
66 CTCAAGATTGTAAATAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
7149390 CCTTACCGTCTTGCATAAGCACACATCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
131 CCTTACCGTCTTGCATAAGCACACATCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
7149455 TCCCGACCCAATTTCGGTTGAACTAAG
196 TCCCGACCCAATTTCGGTTGAACTAAG
7149482 ATA
1 ATA
7149485 GGAGCCTGTG
Statistics
Matches: 222, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 222 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (222 bp):
ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
CTCAAGATTGTAAATAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
CCTTACCGTCTTGCATAAGCACACATCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
TCCCGACCCAATTTCGGTTGAACTAAG
Found at i:7152833 original size:16 final size:16
Alignment explanation
Indices: 7152812--7152846 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
7152802 TGTTGTTTTG
7152812 TTTTGACTGCATGACA
1 TTTTGACTGCATGACA
7152828 TTTTGACTGCATGACA
1 TTTTGACTGCATGACA
7152844 TTT
1 TTT
7152847 CATCATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:7157675 original size:132 final size:132
Alignment explanation
Indices: 7157468--7158884 Score: 1919
Period size: 132 Copynumber: 10.8 Consensus size: 132
7157458 TGAAAGATAG
* * * * * *
7157468 CAGATCTTGTCCCCCTGAGCAGTAGTGTG-GTAGATCAAAGATGGTAGATTTTACCTCCCTGTGG
1 CAGATCTTATCTCCCTAAGCAGTAGTG-GAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGG
* * ** *
7157532 TTACAGTGGAGTACATTAAAGCCAATAATTCTA-CTTCCCTGGGCAGCAGCAGAATAGAGTGAAG
65 TTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGTGGAATAGATTGAAG
7157596 ATTT
129 ATTT
* * * *
7157600 CAGATATTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGAAGATTTTACCTCCCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
* * * *
7157665 CACAGCGGAGTACATTGAAGCCAGTAATTCTA-CTTCCCTGGGTAGCAGCGGAATAGATTGAAGA
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGTGGAATAGATTGAAGA
7157729 TTT
130 TTT
* * * *
7157732 CAGATCTTGTC-CCCTTGAGCAGTAGTGGGGCAGATCAAATATGGCAGATTTTACCTCCCT-ATG
1 CAGATCTTATCTCCC-TAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGA-G
* * *
7157795 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTATTTCCCTGGGTAGCAGCGGAATAGATTGAAG
64 GTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAG
7157860 ATTT
129 ATTT
* * * * *
7157864 CAGATCTTGTCTCACTAAGCAGTAGTGGGGCAGATCAAAGATGG-TGAATTTTACCTCCCTGTGG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGAGG
* * *
7157928 TTACAGTGGCGTACATTGAAGCCAGTAATTCTA-CTTCTCTGGGCAGTAGTGGAATAGATTGAAG
65 TTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGTGGAATAGATTGAAG
7157992 ATTT
129 ATTT
* * * * *
7157996 CAGATCTTGTCTCCCCAAGCAGTTGTGGAGCAGATCAAAGATGG-TGAATTTTACCTCCCTGTGG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGAGG
* * *
7158060 TTACAGTGGAGTACATTGAAGCCAATAATTCTGTCTCCCTGGGCAACAGTGGAATAGATTGAAGA
65 TTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGA
7158125 TTT
130 TTT
* *
7158128 CAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
* * ** *
7158193 TGCAGTAGAGTACATTGAAGTTAGTAATTC-AACTTCCCTGGGCAGCAGTGGAATAGATTGAAGA
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGTGGAATAGATTGAAGA
7158257 TTT
130 TTT
* * * * **
7158260 CAGATCTTGTCTCCCCAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
*
7158325 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGAAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
*
7158390 TA
131 TT
* *
7158392 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
*
7158457 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGACAGCAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
*
7158522 TA
131 TT
* * * * *
7158524 CAGATCTTATCTCCCTAGGTAGTAATGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
* * **
7158589 TACAGTGGAGTACATTGAAGCTAGTAATTCTATCTCCCTAGGCAGCAGTGGAATAGATCAAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
**
7158654 AA
131 TT
**
7158656 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
* *
7158721 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGAAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
*
7158786 TA
131 TT
* * *
7158788 CAGATCTTATCTCCCTAGGCAGTAGT---G--GATCGAAGATGACAGATTTTACCTCCCTGAGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
7158848 TACAGTGGAGTACATTGAAGCCAGT-ATTCCTATCTCC
66 TACAGTGGAGTACATTGAAGCCAGTAATT-CTATCTCC
7158885 TTGAAGTTGC
Statistics
Matches: 1168, Mismatches: 104, Indels: 31
0.90 0.08 0.02
Matches are distributed among these distances:
126 3 0.00
127 62 0.05
129 1 0.00
131 5 0.00
132 1091 0.93
133 6 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGT
TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
TT
Found at i:7158403 original size:44 final size:44
Alignment explanation
Indices: 7158093--7158816 Score: 253
Period size: 44 Copynumber: 16.5 Consensus size: 44
7158083 AATAATTCTG
* * * *
7158093 TCTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTG
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
*** * * ** ** *
7158137 TCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
* ** * * * *
7158181 CCTCCCTGAGGTTGCAGTAGAGTACATTGAAG-TTAGTA-AT-TCA
1 TCTCCCTG-GGCAGCAGTGGAGTAGATTGAAGATTA-CAGATCTTA
* * * *
7158224 ACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTG
1 TC-TCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
*** * * * * **** *
7158269 TCTCCCCAAGTAGTAGTGGAGCAGATCGAAGATGGTGGATTTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
* * * * *
7158313 CCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-TA
1 TCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAG--ATTACAGATCTTA
* *
7158357 TCTCCCTGGGCAGAAGTGGAATAGATTGAAGATTACAGATCTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
** * * * ** * *
7158401 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
* * * * *
7158445 CCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-TA
1 TCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAG--ATTACAGATCTTA
* *
7158489 TCTCCCTGGACAGCAGTGGAATAGATTGAAGATTACAGATCTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
* * * * * ** *
7158533 TCTCCCTAGGTAGTAATGGAGTAGATCGAAGATGGCAGATTTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
* * * * *
7158577 CCTCCCTGAGGTTA-CAGTGGAGTACATTGAAG-CTAGTA-AT-TCTA
1 TCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAGATTA-CAGATCT-TA
* * ** *
7158621 TCTCCCTAGGCAGCAGTGGAATAGATCAAAGATAACAGATCTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
** * * ** **** *
7158665 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
* * * * *
7158709 CCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-TA
1 TCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAG--ATTACAGATCTTA
* * *
7158753 TCTCCCTGGGAAACAGTGGAATAGATTGAAGATTACAGATCTTA
1 TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
* *
7158797 TCTCCCTAGGCAGTAGTGGA
1 TCTCCCTGGGCAGCAGTGGA
7158817 TCGAAGATGA
Statistics
Matches: 472, Mismatches: 170, Indels: 76
0.66 0.24 0.11
Matches are distributed among these distances:
41 9 0.02
42 7 0.01
43 98 0.21
44 267 0.57
45 82 0.17
46 6 0.01
47 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTA
Found at i:7165494 original size:18 final size:18
Alignment explanation
Indices: 7165457--7165490 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7165447 TCAAAGAAGT
*
7165457 AAAATAAAGAAAGGAAAG
1 AAAATAAAGAAAGAAAAG
7165475 AAAATAAA-AAAGAAAA
1 AAAATAAAGAAAGAAAA
7165491 AGAAGAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (18 bp):
AAAATAAAGAAAGAAAAG
Found at i:7167183 original size:47 final size:47
Alignment explanation
Indices: 7167129--7167219 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
7167119 ATCAGTTCTT
* * *
7167129 ACATACTGATCATAATCCCAAACGATTTCATTGAACAATTATTCTAC
1 ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTCTAC
7167176 ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTC
1 ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTC
7167220 GCCTTATTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.30
Consensus pattern (47 bp):
ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTCTAC
Found at i:7183371 original size:25 final size:25
Alignment explanation
Indices: 7183343--7183397 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
7183333 TCCTGTTATA
* *
7183343 GCTCGGATAAGCTTTCTATTACATG
1 GCTCGCATAAGCTTCCTATTACATG
* * *
7183368 GCTCACATGAGCTTCCTATTATATG
1 GCTCGCATAAGCTTCCTATTACATG
7183393 GCTCG
1 GCTCG
7183398 AGAGAGTGCT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (25 bp):
GCTCGCATAAGCTTCCTATTACATG
Found at i:7189886 original size:33 final size:33
Alignment explanation
Indices: 7189847--7189910 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
7189837 AAAAATTATA
* *
7189847 TTTAATACAATAAAATATTTATTATATTTATTT
1 TTTAATACAATAAAACATTTACTATATTTATTT
*
7189880 TTTAATATAATAAAACATTTACTATATTTAT
1 TTTAATACAATAAAACATTTACTATATTTAT
7189911 AGTAGTGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (33 bp):
TTTAATACAATAAAACATTTACTATATTTATTT
Found at i:7191136 original size:28 final size:28
Alignment explanation
Indices: 7191084--7191137 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
7191074 TGACTCCACC
* **
7191084 AAAATCGAATTTTTATTTTCTCTTTACA
1 AAAATCGAATCTTTATTTTAACTTTACA
*
7191112 AAAATCGAATCTTTCTTTTAACTTTA
1 AAAATCGAATCTTTATTTTAACTTTA
7191138 TTCTTCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.04, T:0.48
Consensus pattern (28 bp):
AAAATCGAATCTTTATTTTAACTTTACA
Found at i:7199747 original size:25 final size:24
Alignment explanation
Indices: 7199701--7199747 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
7199691 TGGACATGCA
* *
7199701 TAATATCAAATATATATAATTACT
1 TAATACCAAATATATACAATTACT
*
7199725 TAATACCAACATATATACGATTA
1 TAATACCAA-ATATATACAATTA
7199748 ATTTACACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (24 bp):
TAATACCAAATATATACAATTACT
Found at i:7206148 original size:41 final size:41
Alignment explanation
Indices: 7206103--7206197 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
7206093 AACCTAATTG
*
7206103 GAAAAATAATTTCCTTATTCTAATAAACTACTAAAAGATAA
1 GAAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
* *
7206144 GAAAAATAATTCCCTTATTCTGATAGACTACTAAAAGATAA
1 GAAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
*
7206185 AATAAAAT-ATTCC
1 GA-AAAATAATTCC
7206198 TAAAATATCT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 44 0.90
42 5 0.10
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (41 bp):
GAAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
Found at i:7209548 original size:23 final size:23
Alignment explanation
Indices: 7209513--7209557 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7209503 TGGAGTATAA
* *
7209513 AAGTTTTATATTTTTATATGTAC
1 AAGTTTTATATTTATACATGTAC
7209536 AAGTTTTGA-ATTTATACATGTA
1 AAGTTTT-ATATTTATACATGTA
7209558 TATACAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.51
Consensus pattern (23 bp):
AAGTTTTATATTTATACATGTAC
Found at i:7210206 original size:42 final size:42
Alignment explanation
Indices: 7210159--7210373 Score: 267
Period size: 42 Copynumber: 5.2 Consensus size: 42
7210149 GGTTTATTGT
7210159 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
*
7210201 CGGTGAAATAATTTCAGACTTTACGTCTAGCAGGCTTAATGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
*
7210243 CGGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAATGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
* * * * *
7210285 CGGTGAAA-CATTTCAGACTATATGTCTGGCAGGC-TAAGTGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAA-TGC
* * * * *
7210326 CGGTGTACTGA-ATCAGGCTTTAAGTCTAGCAGGC-TAAGTGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAA-TGC
*
7210367 CAGTGAA
1 CGGTGAA
7210374 TCTGTTTAAA
Statistics
Matches: 153, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
40 3 0.02
41 60 0.39
42 90 0.59
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (42 bp):
CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
Found at i:7213232 original size:19 final size:19
Alignment explanation
Indices: 7213208--7213248 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7213198 TGATTTATTC
7213208 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
7213227 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
7213246 TAA
1 TAA
7213249 CTTTGAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:7217368 original size:15 final size:15
Alignment explanation
Indices: 7217346--7217384 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
7217336 CACGACAAAT
7217346 TCCCTCTCCTTATCC
1 TCCCTCTCCTTATCC
* * *
7217361 TTCCTCTCTTTCTCC
1 TCCCTCTCCTTATCC
7217376 TCCCTCTCC
1 TCCCTCTCC
7217385 CTCCTCTCCT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.44
Consensus pattern (15 bp):
TCCCTCTCCTTATCC
Found at i:7221972 original size:20 final size:20
Alignment explanation
Indices: 7221947--7221986 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7221937 CGTAAAATGA
*
7221947 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7221967 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7221987 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7221976 original size:34 final size:35
Alignment explanation
Indices: 7221932--7221998 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7221922 TAGTAAAATA
*
7221932 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7221966 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7221999 CTGGTGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7222002 original size:14 final size:15
Alignment explanation
Indices: 7221926--7222002 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7221916 GATTGGTAGT
* *
7221926 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
7221940 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
7221954 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7221974 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7221989 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7222003 TGTTTAATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7222645 original size:18 final size:18
Alignment explanation
Indices: 7222624--7222662 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
7222614 GTTGTATCTT
7222624 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
7222642 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
7222660 TAA
1 TAA
7222663 AGTTGGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATTAAATTATTATCCA
Found at i:7223326 original size:14 final size:13
Alignment explanation
Indices: 7223297--7223323 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7223287 AGAAGGTAAG
7223297 ACAGATACTTAAA
1 ACAGATACTTAAA
7223310 ACAGATACTTAAA
1 ACAGATACTTAAA
7223323 A
1 A
7223324 ACATACTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
ACAGATACTTAAA
Found at i:7223726 original size:22 final size:21
Alignment explanation
Indices: 7223696--7223753 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
7223686 GAATGGTATC
7223696 TACAAATCAAATCTCTAAGAT
1 TACAAATCAAATCTCTAAGAT
*
7223717 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCAAATC-TCTAAGAT
*
7223740 TACATATCAAATCT
1 TACAAATCAAATCT
7223754 ACGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.12
22 17 0.53
23 11 0.34
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (21 bp):
TACAAATCAAATCTCTAAGAT
Found at i:7225412 original size:19 final size:19
Alignment explanation
Indices: 7225388--7225427 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7225378 AAACCAAATC
*
7225388 AAGGGAGAATGAAAGGGAG
1 AAGGGAGAACGAAAGGGAG
*
7225407 AAGGGAGAACGAACGGGAG
1 AAGGGAGAACGAAAGGGAG
7225426 AA
1 AA
7225428 CGAAACCAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.45, T:0.03
Consensus pattern (19 bp):
AAGGGAGAACGAAAGGGAG
Found at i:7225934 original size:14 final size:14
Alignment explanation
Indices: 7225886--7225938 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
7225876 GCAGTAAAAT
7225886 AAGAAAAA-GAGACA
1 AAGAAAAAGGAGA-A
*
7225900 AAGAAGAGAAGAAGAA
1 AAGAA-A-AAGGAGAA
7225916 GAAGAAAAAGGAGAA
1 -AAGAAAAAGGAGAA
7225931 AAGAAAAA
1 AAGAAAAA
7225939 AATAGAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 13 0.39
15 8 0.24
16 4 0.12
17 8 0.24
ACGTcount: A:0.72, C:0.02, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGGAGAA
Found at i:7226966 original size:23 final size:23
Alignment explanation
Indices: 7226931--7226981 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
7226921 GTAGAAGGCA
7226931 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
7226954 TGTAATA-CGCCGAAAATTACTAC
1 TGTAATATC-CCGAAAATTACTAC
*
7226977 AGTAA
1 TGTAA
7226982 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 1 0.04
23 25 0.96
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:7231943 original size:5 final size:5
Alignment explanation
Indices: 7231933--7231971 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
7231923 GTTGATAGAG
*
7231933 AAAAT AAAAT AAACA- AAAAT ATAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAA
7231972 AACATATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 1 0.03
5 28 0.93
6 1 0.03
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7237190 original size:144 final size:143
Alignment explanation
Indices: 7236920--7237197 Score: 353
Period size: 144 Copynumber: 1.9 Consensus size: 143
7236910 TCTACTTAAA
* * * * * *
7236920 ACTAGTCAGATAAATTGATGAAAGTTGCACCCAGCGCTAGTCAGATAAACCGACGAAATAATTAG
1 ACTAGTCAGATAAATTAAAGAAAGTTGCACCCAACACTAGTCAGATAAACCAAAGAAATAATTAG
* * * *
7236985 TGAGCCCAGCTCTAGTTGGATAAACTAACGACATTTGCACCTAGTGCTAACCGGATAAATCGACG
66 TGAGCCCAGCTCTAGTTGGATAAACCAACGACATTTGCACCCAGCGCTAACCGAATAAATCGAC-
7237050 AATGTGTGACCAGC
130 AATGTGTGACCAGC
** *
7237064 ACTAGTCAGATAAATTAAAGAAAGTTGTGCTCAACACTAGTC-GAATAAACCAAAGAAATAATTA
1 ACTAGTCAGATAAATTAAAGAAAGTTGCACCCAACACTAGTCAG-ATAAACCAAAGAAATAATTA
** ** *
7237128 GTGAGCCCAGCTCTAGTTGGATAAACCAACGGA-ATTTGTGCCCAGCGCTAGTCGAATGAATCGA
65 GTGAGCCCAGCTCTAGTTGGATAAACCAAC-GACATTTGCACCCAGCGCTAACCGAATAAATCGA
7237192 CAATGT
129 CAATGT
7237198 CAATTACTCA
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
143 6 0.05
144 106 0.93
145 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (143 bp):
ACTAGTCAGATAAATTAAAGAAAGTTGCACCCAACACTAGTCAGATAAACCAAAGAAATAATTAG
TGAGCCCAGCTCTAGTTGGATAAACCAACGACATTTGCACCCAGCGCTAACCGAATAAATCGACA
ATGTGTGACCAGC
Found at i:7238712 original size:45 final size:45
Alignment explanation
Indices: 7238641--7238810 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 45
7238631 GTGTACTGAG
* *
7238641 TATCGTTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGG
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* * *
7238686 TACCATCGATTATAAAGGTGGTTGCTATGTGCTGACTCCACCGGA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* ** * *
7238731 AATCATTGAAAATAAAGGTGGTTGCTATGTGCTGATTCGACCGAA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* * *
7238776 TATAATTGATTATAAGGGTGGTT-CTATGTGTTGAT
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGAT
7238811 CCATCGTGTA
Statistics
Matches: 106, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 11 0.10
45 95 0.90
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (45 bp):
TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
Found at i:7248547 original size:33 final size:33
Alignment explanation
Indices: 7248491--7248567 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
7248481 TATATACATG
* * *
7248491 TGTAAGACCATAGCCGGGCTATGGCA-TTCAGA
1 TGTAAGACCATAGACGGGCTATGGCACTACAAA
*
7248523 TGATAAGACCATA-ACTGGCTTATGGCACTACAAA
1 TG-TAAGACCATAGACGGGC-TATGGCACTACAAA
7248557 TGTAAGACCAT
1 TGTAAGACCAT
7248568 GGCAATGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
32 6 0.16
33 26 0.68
34 6 0.16
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (33 bp):
TGTAAGACCATAGACGGGCTATGGCACTACAAA
Found at i:7249190 original size:101 final size:101
Alignment explanation
Indices: 7249068--7249271 Score: 399
Period size: 101 Copynumber: 2.0 Consensus size: 101
7249058 TGATAAATCA
7249068 ATGAAATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAA
1 ATGAAATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAA
*
7249133 ACATGTTTTAGCTTGTATTGATTGCTTGCTTGGGAT
66 ACATGTTTTAGCTTGTATTGATTGCGTGCTTGGGAT
7249169 ATGAAATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAA
1 ATGAAATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAA
7249234 ACATGTTTTAGCTTGTATTGATTGCGTGCTTGGGAT
66 ACATGTTTTAGCTTGTATTGATTGCGTGCTTGGGAT
7249270 AT
1 AT
7249272 ATTGGTGTAT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (101 bp):
ATGAAATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAA
ACATGTTTTAGCTTGTATTGATTGCGTGCTTGGGAT
Found at i:7260156 original size:37 final size:37
Alignment explanation
Indices: 7260115--7260271 Score: 188
Period size: 37 Copynumber: 4.2 Consensus size: 37
7260105 CAATCACTCG
* * * ** *
7260115 TAAGAGCTAATCCACTCGATAACACGCCAGGCGCTAA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
* *
7260152 TAAGAGCTAGTCCACTTGATAACATGCTAGATGCTCA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
*
7260189 TAAGAGCTAGTCCACCCGATAACAAGCTAGATGCTCA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
* * * * *
7260226 TAAGAGCTAGTCCACCCAATAGCACGTTAGATGCTCA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
7260263 TAAGAGCTA
1 TAAGAGCTA
7260272 ATCAAACCGA
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.21
Consensus pattern (37 bp):
TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
Found at i:7260946 original size:25 final size:23
Alignment explanation
Indices: 7260912--7260959 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
7260902 TTCATAATTT
*
7260912 AATCATTAAATTAAAATCAAACAAA
1 AATCACTAAA-TAAAA-CAAACAAA
*
7260937 AATCACTAAATAAAACAATCAAA
1 AATCACTAAATAAAACAAACAAA
7260960 GCTTCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 5 0.24
25 9 0.43
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.21
Consensus pattern (23 bp):
AATCACTAAATAAAACAAACAAA
Found at i:7262287 original size:19 final size:19
Alignment explanation
Indices: 7262265--7262331 Score: 55
Period size: 19 Copynumber: 3.3 Consensus size: 19
7262255 AAGAAAATAA
7262265 AGAAATAAAAAGAGAAAGG
1 AGAAATAAAAAGAGAAAGG
* *
7262284 AGAAA-AGAATCAGAAAGAAAAGAA
1 AGAAATA-AA--A-AGAG-AAAG-G
7262308 AGAAATAAAAAGAGAAAGG
1 AGAAATAAAAAGAGAAAGG
7262327 AGAAA
1 AGAAA
7262332 AGAATCAGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
18 1 0.03
19 12 0.32
20 4 0.11
21 4 0.11
22 4 0.11
23 4 0.11
24 7 0.19
25 1 0.03
ACGTcount: A:0.70, C:0.01, G:0.24, T:0.04
Consensus pattern (19 bp):
AGAAATAAAAAGAGAAAGG
Found at i:7262292 original size:24 final size:24
Alignment explanation
Indices: 7262263--7262335 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
7262253 GAAAGAAAAT
7262263 AAAGAAATAAAAAGAGAAAGGAGA
1 AAAGAAATAAAAAGAGAAAGGAGA
* *
7262287 AAAG-AATCAGAA-AGAAA--AG-
1 AAAGAAATAAAAAGAGAAAGGAGA
7262306 AAAGAAATAAAAAGAGAAAGGAGA
1 AAAGAAATAAAAAGAGAAAGGAGA
7262330 AAAGAA
1 AAAGAA
7262336 TCAGACGTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
19 4 0.10
20 8 0.20
21 5 0.12
22 5 0.12
23 8 0.20
24 10 0.25
ACGTcount: A:0.71, C:0.01, G:0.23, T:0.04
Consensus pattern (24 bp):
AAAGAAATAAAAAGAGAAAGGAGA
Found at i:7262299 original size:43 final size:43
Alignment explanation
Indices: 7262252--7262340 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
7262242 AAACCAAATT
*
7262252 AGAAAGAAAATAAAGAAATAAAAAGAGAAAGGAGAAAAGAATC
1 AGAAAGAAAAGAAAGAAATAAAAAGAGAAAGGAGAAAAGAATC
7262295 AGAAAGAAAAGAAAGAAATAAAAAGAGAAAGGAGAAAAGAATC
1 AGAAAGAAAAGAAAGAAATAAAAAGAGAAAGGAGAAAAGAATC
7262338 AGA
1 AGA
7262341 CGTACGGCCT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.70, C:0.02, G:0.22, T:0.06
Consensus pattern (43 bp):
AGAAAGAAAAGAAAGAAATAAAAAGAGAAAGGAGAAAAGAATC
Found at i:7262772 original size:20 final size:20
Alignment explanation
Indices: 7262747--7262788 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7262737 GAAATGAGAC
* *
7262747 AAATATTGAGTAAAAAATTG
1 AAATATTAAATAAAAAATTG
*
7262767 AAATATTAAATATAAAATTG
1 AAATATTAAATAAAAAATTG
7262787 AA
1 AA
7262789 TTGTGTTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (20 bp):
AAATATTAAATAAAAAATTG
Found at i:7264760 original size:14 final size:14
Alignment explanation
Indices: 7264724--7264760 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
7264714 CAAATGGTAG
*
7264724 ACATATTTGAATAC
1 ACATATTTGAATAA
7264738 ACAATATTTGAATAA
1 AC-ATATTTGAATAA
7264753 ACATATTT
1 ACATATTT
7264761 AAAGTACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (14 bp):
ACATATTTGAATAA
Found at i:7272135 original size:27 final size:30
Alignment explanation
Indices: 7272099--7272163 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
7272089 TTTATATTTG
*
7272099 TAAAATTTTAT-AA-ATATTTT-TGATAAAA
1 TAAAA-TTTATGAATATATTTTATAATAAAA
*
7272127 TAAAATTTATGAATATATTTTATAATTAAA
1 TAAAATTTATGAATATATTTTATAATAAAA
7272157 TAAAATT
1 TAAAATT
7272164 AATTTTCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 5 0.16
28 7 0.22
29 7 0.22
30 13 0.41
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (30 bp):
TAAAATTTATGAATATATTTTATAATAAAA
Found at i:7272631 original size:24 final size:24
Alignment explanation
Indices: 7272599--7272644 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
7272589 TACTAGGATG
7272599 GTGAGATTCAAGTGTTCTTTTATC
1 GTGAGATTCAAGTGTTCTTTTATC
7272623 GTGAGATTCAAGTGTTCTTTTA
1 GTGAGATTCAAGTGTTCTTTTA
7272645 CTTTTCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (24 bp):
GTGAGATTCAAGTGTTCTTTTATC
Found at i:7273084 original size:47 final size:46
Alignment explanation
Indices: 7272992--7273085 Score: 127
Period size: 46 Copynumber: 2.0 Consensus size: 46
7272982 TTATAAATTA
* * *
7272992 TTTAGGGGTTACAAGATAATGAATTAGGGGTTATGAATATTCATTT
1 TTTAGGGGTTACAAGAGAATGAATTAGGGGTTATGAACATCCATTT
*
7273038 TTTAGGGGTTACAATAGAATGGAATT-GGGCGTTATGAACATCCATTT
1 TTTAGGGGTTACAAGAGAAT-GAATTAGGG-GTTATGAACATCCATTT
7273085 T
1 T
7273086 ATCAAATGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
46 21 0.50
47 21 0.50
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.37
Consensus pattern (46 bp):
TTTAGGGGTTACAAGAGAATGAATTAGGGGTTATGAACATCCATTT
Found at i:7274521 original size:18 final size:17
Alignment explanation
Indices: 7274500--7274548 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
7274490 ACTTTATATA
7274500 CTTCAGGGATTTTAAATT
1 CTTCAGGGATTTTAAA-T
*
7274518 CTTCTGGGATTTTAAAT
1 CTTCAGGGATTTTAAAT
*
7274535 CTTTCAAGGATTTT
1 C-TTCAGGGATTTT
7274549 CATATAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.47
Consensus pattern (17 bp):
CTTCAGGGATTTTAAAT
Found at i:7277974 original size:45 final size:45
Alignment explanation
Indices: 7277881--7277974 Score: 100
Period size: 45 Copynumber: 2.1 Consensus size: 45
7277871 TTATAAATTA
* * * ***
7277881 TTTAGAGGTTACAAGATAATGAATTAGGGGTTATGGATATTTGTT
1 TTTAGAGGTTACAAGAAAATGAATTAGGGGTTACGGACATTCCAT
* *
7277926 TTTAGGGGTTACAATAAAATGGAATTAGGGGTTACGGACA-TCCAT
1 TTTAGAGGTTACAAGAAAAT-GAATTAGGGGTTACGGACATTCCAT
7277971 TTTA
1 TTTA
7277975 TCAAATGATT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
45 23 0.57
46 17 0.43
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (45 bp):
TTTAGAGGTTACAAGAAAATGAATTAGGGGTTACGGACATTCCAT
Found at i:7278810 original size:42 final size:42
Alignment explanation
Indices: 7278763--7278842 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
7278753 GATTTAGAAT
* * *
7278763 CACACGGCCAGGGACATAGGCGTGTGCCCAGGTCGTGTGACC
1 CACACGGACAAGGACATAGGCGTGTGCCCAGGCCGTGTGACC
* *
7278805 CACACGGACAAGGACATGGGCGTGTGTCCAGGCCGTGT
1 CACACGGACAAGGACATAGGCGTGTGCCCAGGCCGTGT
7278843 ACCTCACTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.20, C:0.29, G:0.36, T:0.15
Consensus pattern (42 bp):
CACACGGACAAGGACATAGGCGTGTGCCCAGGCCGTGTGACC
Found at i:7278904 original size:104 final size:104
Alignment explanation
Indices: 7278709--7278905 Score: 277
Period size: 104 Copynumber: 1.9 Consensus size: 104
7278699 TTCACATGGG
* * *
7278709 CAAGGACATGGGTGTGTGTCCAGGTCGTGTAACTAACTGTTTATGATTTAGAATCACACGGCCAG
1 CAAGGACATGGGCGTGTGTCCAGGCCGTGTAACTAACTGTTTATGATTTAGAATCACACGGCCAA
* * * *
7278774 GGACATAGGCGTGTGCCCAGGTCGTGTGACCCACACGGA
66 GGACATAGGCATATGCCCAAGCCGTGTGACCCACACGGA
* * *
7278813 CAAGGACATGGGCGTGTGTCCAGGCCGTGTACCTCACTGTTTATGATTTAGAATCACACGGGCAA
1 CAAGGACATGGGCGTGTGTCCAGGCCGTGTAACTAACTGTTTATGATTTAGAATCACACGGCCAA
* * *
7278878 TGACATGGGCATATGTCCAAGCCGTGTG
66 GGACATAGGCATATGCCCAAGCCGTGTG
7278906 GCATTTAAAT
Statistics
Matches: 80, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
104 80 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (104 bp):
CAAGGACATGGGCGTGTGTCCAGGCCGTGTAACTAACTGTTTATGATTTAGAATCACACGGCCAA
GGACATAGGCATATGCCCAAGCCGTGTGACCCACACGGA
Found at i:7285262 original size:104 final size:101
Alignment explanation
Indices: 7285080--7285408 Score: 284
Period size: 104 Copynumber: 3.3 Consensus size: 101
7285070 TCTCATGGGC
* * * * * * *
7285080 AAGGACATGGGCGCGTGTCCAGGCCTTGTAACTCACTATTTATGATTTGGAATCACACAGTCAGG
1 AAGGACATGGGCGTGTGTCCAAGCCGTGTAACTCACTGTTTATGATTTAGAATCACACGGCCAGG
* ** *
7285145 GATATGGATGTGTGCCCAGTTCGTGTAAGCCAAACGGG
66 GACATGGGCGTGTGCCCAG-CCGTGTAAGCCAAAC-GG
* *
7285183 AAAGGATATGGACGTGTGTCCAAGCCGTGTAACTCACTGTTTATGATTTAGAATCACACGGCCAG
1 -AAGGACATGGGCGTGTGTCCAAGCCGTGTAACTCACTGTTTATGATTTAGAATCACACGGCCAG
* *
7285248 GGACATGGGCGTGTGCCCAGGCTGTGTGAGCC--AC--
65 GGACATGGGCGTGTGCCCA-GCCGTGTAAGCCAAACGG
* * * * *
7285282 ----AC--GGGTGTGTGTCCAAGTCATGTAACTCACTGTTTATGATTTAGAATCACACGGGCAAG
1 AAGGACATGGGCGTGTGTCCAAGCCGTGTAACTCACTGTTTATGATTTAGAATCACACGGCCAGG
* * * *
7285341 GACATAGGCCTGTGCCCAGGCCATGTGAA-CCATACGAG
66 GACATGGGCGTGTGCCCA-GCCGTGT-AAGCCAAACG-G
*
7285379 CAAGGACATGGGCGTGTGTCCAGGCCGTGT
1 -AAGGACATGGGCGTGTGTCCAAGCCGTGT
7285409 GGCATCTGAA
Statistics
Matches: 180, Mismatches: 31, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
92 75 0.42
93 1 0.01
94 3 0.02
102 4 0.02
104 96 0.53
105 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (101 bp):
AAGGACATGGGCGTGTGTCCAAGCCGTGTAACTCACTGTTTATGATTTAGAATCACACGGCCAGG
GACATGGGCGTGTGCCCAGCCGTGTAAGCCAAACGG
Found at i:7285368 original size:92 final size:92
Alignment explanation
Indices: 7285196--7285368 Score: 274
Period size: 92 Copynumber: 1.9 Consensus size: 92
7285186 GGATATGGAC
* * * *
7285196 GTGTGTCCAAGCCGTGTAACTCACTGTTTATGATTTAGAATCACACGGCCAGGGACATGGGCGTG
1 GTGTGTCCAAGCCATGTAACTCACTGTTTATGATTTAGAATCACACGGCCAAGGACATAGGCCTG
**
7285261 TGCCCAGGCTGTGTGAGCCACACGGGT
66 TGCCCAGGCCATGTGAGCCACACGGGT
* *
7285288 GTGTGTCCAAGTCATGTAACTCACTGTTTATGATTTAGAATCACACGGGCAAGGACATAGGCCTG
1 GTGTGTCCAAGCCATGTAACTCACTGTTTATGATTTAGAATCACACGGCCAAGGACATAGGCCTG
7285353 TGCCCAGGCCATGTGA
66 TGCCCAGGCCATGTGA
7285369 ACCATACGAG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (92 bp):
GTGTGTCCAAGCCATGTAACTCACTGTTTATGATTTAGAATCACACGGCCAAGGACATAGGCCTG
TGCCCAGGCCATGTGAGCCACACGGGT
Found at i:7294185 original size:14 final size:14
Alignment explanation
Indices: 7294166--7294194 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7294156 AATTTGAATT
7294166 TCAAGTTAATCGAA
1 TCAAGTTAATCGAA
7294180 TCAAGTTAATCGAA
1 TCAAGTTAATCGAA
7294194 T
1 T
7294195 TATTCGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (14 bp):
TCAAGTTAATCGAA
Found at i:7294350 original size:20 final size:20
Alignment explanation
Indices: 7294317--7294370 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
7294307 TCTCTCTCAA
*
7294317 CAAAAATTACAAAATAATTT-T
1 CAAAAATT-TAAAAT-ATTTAT
7294338 CAAAAATTTAAAATATTTAT
1 CAAAAATTTAAAATATTTAT
*
7294358 -AAAAAATTAAAAT
1 CAAAAATTTAAAAT
7294371 TTATAGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 16 0.53
20 6 0.20
21 8 0.27
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (20 bp):
CAAAAATTTAAAATATTTAT
Found at i:7294404 original size:19 final size:20
Alignment explanation
Indices: 7294318--7294406 Score: 76
Period size: 20 Copynumber: 4.2 Consensus size: 20
7294308 CTCTCTCAAC
* *
7294318 AAAAATTACAAAATAATTTTC
1 AAAAATTATAAAAT-ATTTTA
7294339 AAAAATT-TAAAATATTTATA
1 AAAAATTATAAAATATTT-TA
7294359 AAAAATTA-AAATTTATAGTTTTAA
1 AAAAATTATAAA---ATA-TTTT-A
7294383 AAAAATTATAAAAT-TTTTA
1 AAAAATTATAAAATATTTTA
7294402 AAAAA
1 AAAAA
7294407 AATCTAAAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.17
20 20 0.34
21 7 0.12
22 2 0.03
23 4 0.07
24 12 0.21
25 3 0.05
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (20 bp):
AAAAATTATAAAATATTTTA
Found at i:7294414 original size:20 final size:20
Alignment explanation
Indices: 7294377--7294415 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7294367 AAATTTATAG
*
7294377 TTTTAAAAAAATTATAAAAT
1 TTTTAAAAAAAATATAAAAT
*
7294397 TTTTAAAAAAAATCTAAAA
1 TTTTAAAAAAAATATAAAA
7294416 AATGTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTTAAAAAAAATATAAAAT
Found at i:7296093 original size:18 final size:19
Alignment explanation
Indices: 7296070--7296113 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
7296060 AAAAAATTGA
*
7296070 GAATTTTTATAA-TATTTT
1 GAATTTTTAAAATTATTTT
*
7296088 GAATTTTAAAAATTATTTT
1 GAATTTTTAAAATTATTTT
7296107 -AATTTTT
1 GAATTTTT
7296114 TTTGTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
GAATTTTTAAAATTATTTT
Found at i:7297689 original size:14 final size:14
Alignment explanation
Indices: 7297670--7297699 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7297660 CATAGATCCT
7297670 GATTAGCACTTCCA
1 GATTAGCACTTCCA
7297684 GATTAGCACTTCCA
1 GATTAGCACTTCCA
7297698 GA
1 GA
7297700 CAAACTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (14 bp):
GATTAGCACTTCCA
Found at i:7300183 original size:41 final size:42
Alignment explanation
Indices: 7300094--7300189 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
7300084 TCAGGCTTAG
*
7300094 CGTCTAGCAGGCTTATTACCAGTGAAACAATATCAGAATTTA
1 CGTCTAGCAGGCTTATTACCAGTGAAACAATATCAGAATATA
* * * *
7300136 CGTCTAGCAGGCTTATTGCCGGTGAAAC-ATTTCAGACTATA
1 CGTCTAGCAGGCTTATTACCAGTGAAACAATATCAGAATATA
* *
7300177 TGTCTAGAAGGCT
1 CGTCTAGCAGGCT
7300190 AAGTGCTGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 21 0.45
42 26 0.55
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (42 bp):
CGTCTAGCAGGCTTATTACCAGTGAAACAATATCAGAATATA
Found at i:7309702 original size:41 final size:41
Alignment explanation
Indices: 7309602--7309748 Score: 145
Period size: 41 Copynumber: 3.6 Consensus size: 41
7309592 GGCTTAGCGC
* * * *
7309602 CTAGCAGGCTTATTGCCAGAGAAACAATATCAGACTTTATGT
1 CTAGCAGGCTAAGTGCCGGTGAAAC-ATATCAGACTTTATGT
* * * *
7309644 CTAGCAGGCTTATTGCCGGTGAAACATTTCAGACTATATGT
1 CTAGCAGGCTAAGTGCCGGTGAAACATATCAGACTTTATGT
* * * *
7309685 CTAGAAGGCTAAGTGCCGATG-TAC-TGAATCAGACTTTAAGT
1 CTAGCAGGCTAAGTGCCGGTGAAACAT--ATCAGACTTTATGT
7309726 CTAGCAGGCTAAGTGCCGGTGAA
1 CTAGCAGGCTAAGTGCCGGTGAA
7309749 TCTATTTAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
41 61 0.70
42 23 0.26
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAAACATATCAGACTTTATGT
Found at i:7317548 original size:17 final size:18
Alignment explanation
Indices: 7317526--7317561 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7317516 GAAGCAAGCA
*
7317526 ATGATTGAAGA-AATCAG
1 ATGATTGAAAAGAATCAG
7317543 ATGATTGAAAAGAATCAG
1 ATGATTGAAAAGAATCAG
7317561 A
1 A
7317562 CCTGGAGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (18 bp):
ATGATTGAAAAGAATCAG
Found at i:7324972 original size:22 final size:22
Alignment explanation
Indices: 7324947--7325001 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
7324937 AGTTTATGAT
7324947 TAATTATTATTATATATAAGC-C
1 TAATTATT-TTATATATAAGCTC
* *
7324969 TAA-TATTTTATTTATCAGCTC
1 TAATTATTTTATATATAAGCTC
*
7324990 TTATTATTTTAT
1 TAATTATTTTAT
7325002 TATTCCAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 10 0.36
21 7 0.25
22 11 0.39
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.55
Consensus pattern (22 bp):
TAATTATTTTATATATAAGCTC
Found at i:7327585 original size:43 final size:43
Alignment explanation
Indices: 7327486--7327757 Score: 323
Period size: 43 Copynumber: 6.3 Consensus size: 43
7327476 AGGTTACGTT
* * * * * *
7327486 TTTAGCGACGTTTTTG-CAAGAAGCACTGCTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGACAA-AAGCGCCGCTAAAGGTCATGATC
* * *
7327528 TTTCGCGGCGTTTGTGACAAAAGCACCGCTAAAGGTCAAGATC
1 TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGTCATGATC
* * *
7327571 TTTAGCGGCATTTGTGACAAAAGTGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGTCATGATC
7327614 TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGTCATGATC
* *** * * *
7327657 TTTAGCGGCGTTTGTGTCGCTAGCGCCGCCATAGGTCAAGATC
1 TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGTCATGATC
* *
7327700 TTTAACGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGTCATGATC
*
7327743 TTTAGCGGCATTTGT
1 TTTAGCGGCGTTTGT
7327758 TCACATAAAT
Statistics
Matches: 194, Mismatches: 34, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
42 28 0.14
43 166 0.86
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGGTCATGATC
Found at i:7329191 original size:17 final size:17
Alignment explanation
Indices: 7329169--7329214 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
7329159 AGCTCACATT
7329169 TTTTGGTGAGCTCGTAG
1 TTTTGGTGAGCTCGTAG
7329186 TTTTGGTGAGCTCGTAG
1 TTTTGGTGAGCTCGTAG
*
7329203 TTCTGGTGAGCT
1 TTTTGGTGAGCT
7329215 TGCAATTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.11, C:0.13, G:0.35, T:0.41
Consensus pattern (17 bp):
TTTTGGTGAGCTCGTAG
Found at i:7335841 original size:46 final size:46
Alignment explanation
Indices: 7335739--7335985 Score: 394
Period size: 46 Copynumber: 5.5 Consensus size: 46
7335729 TACGTATGAT
* * * *
7335739 CACTTATCAC-TTGTC-CCTGATTAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTGC
7335782 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTGC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTGC
*
7335828 CACTTATCACTTTGTCACTTGATCAGATAAATGTAGCT-AAGCTGC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTGC
*
7335873 CACTTATCACTTTGTCACTTGATCAGATTAGTGTAGCTAAAGCTGC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTGC
* *
7335919 CACTTATTACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTGC
7335965 CACTTATCACTTTGTCACTTG
1 CACTTATCACTTTGTCACTTG
7335986 TCACTGATCA
Statistics
Matches: 189, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
43 10 0.05
44 5 0.03
45 62 0.33
46 112 0.59
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTGC
Found at i:7335864 original size:91 final size:91
Alignment explanation
Indices: 7335739--7335985 Score: 408
Period size: 91 Copynumber: 2.7 Consensus size: 91
7335729 TACGTATGAT
* * *
7335739 CACTTATCAC-TTGTC-CCTGATTAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
7335802 GATCAGATAAGTGTAGCTAAAGCTGC
66 GATCAGATAAGTGTAGCTAAAGCTGC
* *
7335828 CACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAGCTGCCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
*
7335893 GATCAGATTAGTGTAGCTAAAGCTGC
66 GATCAGATAAGTGTAGCTAAAGCTGC
*
7335919 CACTTATTACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTGTCACT
7335984 TG
65 TG
7335986 TCACTGATCA
Statistics
Matches: 146, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
89 10 0.07
90 5 0.03
91 104 0.71
92 27 0.18
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (91 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
GATCAGATAAGTGTAGCTAAAGCTGC
Found at i:7335937 original size:137 final size:134
Alignment explanation
Indices: 7335739--7335985 Score: 404
Period size: 137 Copynumber: 1.8 Consensus size: 134
7335729 TACGTATGAT
* *
7335739 CACTTATCACTTGTCCCTGATTAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGA
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTTGA
*
7335804 TCAGATAAGTGTAGCTAAAGCTGCCACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAG
66 TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAG
7335869 CTGC
131 CTGC
* * * *
7335873 CACTTATCACTTTGTCACTTGATCAGATTAGTGTAGCTAAAGCTGCCACTTATTACTTTGTCACT
1 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTGTCACT
7335938 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTG
63 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTG
7335986 TCACTGATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
134 10 0.10
135 5 0.05
136 18 0.17
137 70 0.68
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (134 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTTGA
TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAG
CTGC
Found at i:7345728 original size:41 final size:41
Alignment explanation
Indices: 7345683--7345766 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
7345673 ACACGATTAC
7345683 TAAGTTTACCTGTCAACCACAATCTTTGGTGAATTCCTTGG
1 TAAGTTTACCTGTCAACCACAATCTTTGGTGAATTCCTTGG
7345724 TAAGTTTACCTGTCAACCACAATCTTTGGTGAATTCCTTGG
1 TAAGTTTACCTGTCAACCACAATCTTTGGTGAATTCCTTGG
7345765 TA
1 TA
7345767 TAAACTCACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (41 bp):
TAAGTTTACCTGTCAACCACAATCTTTGGTGAATTCCTTGG
Found at i:7345988 original size:45 final size:46
Alignment explanation
Indices: 7345915--7346024 Score: 163
Period size: 46 Copynumber: 2.5 Consensus size: 46
7345905 TACGTATGAT
* * *
7345915 CACTTATCAC-TTGTC-CCTGATCAGATAAGTATCGCTAGA-CTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCTAAAGCTAC
*
7345958 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCTAAAGCTAC
7346004 CACTTATCACTTTGTCACTTG
1 CACTTATCACTTTGTCACTTG
7346025 TCATTGATCA
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 10 0.17
44 5 0.08
45 20 0.33
46 25 0.42
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCTAAAGCTAC
Found at i:7352589 original size:12 final size:12
Alignment explanation
Indices: 7352572--7352613 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
7352562 GCTTGAATTA
7352572 AATTAATTATAG
1 AATTAATTATAG
7352584 AATTAATT-TA-
1 AATTAATTATAG
*
7352594 ATTTAATTATAG
1 AATTAATTATAG
7352606 AATTAATT
1 AATTAATT
7352614 TAATTCGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 7 0.27
11 4 0.15
12 15 0.58
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (12 bp):
AATTAATTATAG
Found at i:7352617 original size:22 final size:22
Alignment explanation
Indices: 7352569--7352618 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
7352559 GTCGCTTGAA
*
7352569 TTAAATTAATTATAGAATTAAT
1 TTAATTTAATTATAGAATTAAT
7352591 TTAATTTAATTATAGAATTAAT
1 TTAATTTAATTATAGAATTAAT
7352613 TTAATT
1 TTAATT
7352619 CGGTAATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
TTAATTTAATTATAGAATTAAT
Found at i:7360645 original size:22 final size:22
Alignment explanation
Indices: 7360617--7360668 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
7360607 GTTAATCTAC
*
7360617 CTCGAGACATTGG-AAATTGTGT
1 CTCGAGAC-TTGGTAAATTATGT
**
7360639 CTCGAGACTTGGTCCATTATGT
1 CTCGAGACTTGGTAAATTATGT
7360661 CTCGAGAC
1 CTCGAGAC
7360669 CAACCTCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (22 bp):
CTCGAGACTTGGTAAATTATGT
Found at i:7373097 original size:26 final size:26
Alignment explanation
Indices: 7373068--7373138 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 26
7373058 AGTCCTCACA
*
7373068 GACTTCCCCAAAAGATAGTCCTGGTG
1 GACTTCCACAAAAGATAGTCCTGGTG
* *
7373094 GACTTTCCACATATCAGATAGTCCTTGTG
1 GAC-TTCCACA-A-AAGATAGTCCTGGTG
7373123 GACTTCCACAAAAGAT
1 GACTTCCACAAAAGAT
7373139 TTTCCTAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 7 0.18
27 7 0.18
28 8 0.21
29 16 0.42
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GACTTCCACAAAAGATAGTCCTGGTG
Found at i:7373229 original size:22 final size:22
Alignment explanation
Indices: 7373204--7373282 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
7373194 TCCCATAAAA
*
7373204 GGGCTCTCATACGTCCCCTGAG
1 GGGCTCTCATACGTCCCCTAAG
* * * *
7373226 GGGCTCTCAAATGTCCCATAAA
1 GGGCTCTCATACGTCCCCTAAG
* *
7373248 GGGCTCTTATACGTCCCGCACAAG
1 GGGCTCTCATACGTCCC-C-TAAG
7373272 GGGCTCTCATA
1 GGGCTCTCATA
7373283 TACAGGTGTG
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
22 31 0.72
24 12 0.28
ACGTcount: A:0.22, C:0.32, G:0.24, T:0.23
Consensus pattern (22 bp):
GGGCTCTCATACGTCCCCTAAG
Found at i:7374574 original size:100 final size:100
Alignment explanation
Indices: 7374396--7374594 Score: 353
Period size: 100 Copynumber: 2.0 Consensus size: 100
7374386 CAACCCGCCA
*
7374396 CTTAACTTTAATTACAAAAAGAACTTACCAGAATAGAAAACTTTTCAATTTAATCCACAATTCTC
1 CTTAACTTTAATTACAAAAAGAACTTACCAGAATAGAAAAATTTTCAATTTAATCCACAATTCTC
7374461 CTTTGCAACATACGACTTAACAAATATGGGTGCAT
66 CTTTGCAACATACGACTTAACAAATATGGGTGCAT
* * **
7374496 CTTATCTTTAATTACAAAAAGAACTTACCAGAATAGAAAAATTTTCAATTTTATCTGCAATTCTC
1 CTTAACTTTAATTACAAAAAGAACTTACCAGAATAGAAAAATTTTCAATTTAATCCACAATTCTC
7374561 CTTTGCAACATACGACTTAACAAATATGGGTGCA
66 CTTTGCAACATACGACTTAACAAATATGGGTGCA
7374595 ACAATATCTA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 94 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (100 bp):
CTTAACTTTAATTACAAAAAGAACTTACCAGAATAGAAAAATTTTCAATTTAATCCACAATTCTC
CTTTGCAACATACGACTTAACAAATATGGGTGCAT
Found at i:7393860 original size:22 final size:22
Alignment explanation
Indices: 7393812--7393861 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
7393802 CAATAACAAT
* *
7393812 AAAATAGTAGCAATATAATAGC
1 AAAATAGTAGCAATACAACAGC
*
7393834 GAAATAGTAGCAA-AGCAACAGC
1 AAAATAGTAGCAATA-CAACAGC
7393856 AAAATA
1 AAAATA
7393862 ACTTATTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.56, C:0.12, G:0.16, T:0.16
Consensus pattern (22 bp):
AAAATAGTAGCAATACAACAGC
Found at i:7397244 original size:22 final size:21
Alignment explanation
Indices: 7397214--7397254 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7397204 GATATGATAA
*
7397214 TTTTATTTATGTTATTTTTAAT
1 TTTTATTTAT-TCATTTTTAAT
*
7397236 TTTTGTTTATTCATTTTTA
1 TTTTATTTATTCATTTTTA
7397255 CTGGTTGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTATTTATTCATTTTTAAT
Found at i:7405186 original size:54 final size:54
Alignment explanation
Indices: 7405084--7405253 Score: 205
Period size: 54 Copynumber: 3.1 Consensus size: 54
7405074 CAAGTCAGTC
* * * * *
7405084 AGTTACATGGCCTAACACACGGCTTGATACACGGGCATGTGTGACAACTTAGTG
1 AGTTACACGACCTAGCACACGGCTTGACACACGGGCATGTGTGGCAACTTAGTG
* * * *
7405138 AGGTACACGACCTAGCACACGGTTTGACACACAGGCGTGTGTGGCAACTTAGTG
1 AGTTACACGACCTAGCACACGGCTTGACACACGGGCATGTGTGGCAACTTAGTG
* * *** *
7405192 AGTTAGACGACCTAGCACATGGCCCAACACACGGGCATGAGTGGCAACTTAGTG
1 AGTTACACGACCTAGCACACGGCTTGACACACGGGCATGTGTGGCAACTTAGTG
7405246 AGTTACAC
1 AGTTACAC
7405254 AGGTGAGGAC
Statistics
Matches: 96, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (54 bp):
AGTTACACGACCTAGCACACGGCTTGACACACGGGCATGTGTGGCAACTTAGTG
Found at i:7406976 original size:72 final size:73
Alignment explanation
Indices: 7406888--7407024 Score: 213
Period size: 74 Copynumber: 1.9 Consensus size: 73
7406878 AATTAGTTGT
* *
7406888 ATATCACAATTTCCATTTCATAAACTCAATG-ATAACTCATTTCATATACATGCCTTTTCAATCC
1 ATATCACAATTCCCATTTCATAAACTCAATGAATAACTCATTTCATATACATACCTTTTCAATCC
7406952 CTTTACAC
66 CTTTACAC
* * *
7406960 ATATTACAATTCCCATTTCATAAGCTCAATGACATAACTCATTTCATATACATACTTTTTCAATC
1 ATATCACAATTCCCATTTCATAAACTCAATGA-ATAACTCATTTCATATACATACCTTTTCAATC
7407025 AAGCTTATTA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
72 28 0.48
74 30 0.52
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (73 bp):
ATATCACAATTCCCATTTCATAAACTCAATGAATAACTCATTTCATATACATACCTTTTCAATCC
CTTTACAC
Found at i:7423067 original size:42 final size:42
Alignment explanation
Indices: 7423021--7423180 Score: 167
Period size: 42 Copynumber: 3.8 Consensus size: 42
7423011 TGATTCAATT
*
7423021 TATCTGATGATGCACTTATGTGTCAGTATAATTTCTTTGGTA
1 TATCTGATGATGCACTTATGTGCCAGTATAATTTCTTTGGTA
* * * *
7423063 TATCTGATGATGCATTTACGTGCCAGTATATTTTCTTTAGTA
1 TATCTGATGATGCACTTATGTGCCAGTATAATTTCTTTGGTA
* * * ** * * *
7423105 CATCTAATGATGCATTTATGTGCCAACATGATTGCTTTGGTT
1 TATCTGATGATGCACTTATGTGCCAGTATAATTTCTTTGGTA
* * *
7423147 TATCCGATGATGCACTATGTGTGCTAGTATAATT
1 TATCTGATGATGCACT-TATGTGCCAGTATAATT
7423181 GCTTCGGTTC
Statistics
Matches: 93, Mismatches: 24, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
42 81 0.87
43 12 0.13
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.42
Consensus pattern (42 bp):
TATCTGATGATGCACTTATGTGCCAGTATAATTTCTTTGGTA
Found at i:7434088 original size:17 final size:17
Alignment explanation
Indices: 7434057--7434091 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7434047 GTAAAATTAT
**
7434057 TTTAAATTTTTCTTGCA
1 TTTAAATTTGACTTGCA
7434074 TTTAAATTTGACTTGCA
1 TTTAAATTTGACTTGCA
7434091 T
1 T
7434092 GTATTTTCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54
Consensus pattern (17 bp):
TTTAAATTTGACTTGCA
Found at i:7435329 original size:47 final size:47
Alignment explanation
Indices: 7435268--7435438 Score: 256
Period size: 47 Copynumber: 3.6 Consensus size: 47
7435258 AAAAAAAAAA
* *
7435268 TTGACTGGATATAGTTTCAAACAAAGAAAATGAGAAAGGAAAAACTT
1 TTGACTGGTTATAGTTTCAAACAAAGAAAACGAGAAAGGAAAAACTT
*
7435315 TTGACTGGTTATAGTTTCAAACAAAGAAAACGAGAGAGGAAAAACTT
1 TTGACTGGTTATAGTTTCAAACAAAGAAAACGAGAAAGGAAAAACTT
*
7435362 TTGACTGGTTATAGTTTCAAACAGAGAAAACG-GTACAA-GAAAAACTT
1 TTGACTGGTTATAGTTTCAAACAAAGAAAACGAG-A-AAGGAAAAACTT
* *
7435409 TTGACTAGTTATAGTTTCAAACAGAGAAAA
1 TTGACTGGTTATAGTTTCAAACAAAGAAAA
7435439 TGGAAGAAGA
Statistics
Matches: 116, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.01
47 114 0.98
48 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.19, T:0.25
Consensus pattern (47 bp):
TTGACTGGTTATAGTTTCAAACAAAGAAAACGAGAAAGGAAAAACTT
Found at i:7435465 original size:47 final size:47
Alignment explanation
Indices: 7435268--7435459 Score: 145
Period size: 47 Copynumber: 4.1 Consensus size: 47
7435258 AAAAAAAAAA
* * * * * ***
7435268 TTGACTGGATATAGTTTCAAACAAAGAAAATGAGAA-AGGAAAAACTT
1 TTGACTAGTTATAGTTTCAAACAGAGAAAACG-GAACAAGAAAAAAGG
* * * * ***
7435315 TTGACTGGTTATAGTTTCAAACAAAGAAAAC-GAGAGAGGAAAAACTT
1 TTGACTAGTTATAGTTTCAAACAGAGAAAACGGA-ACAAGAAAAAAGG
* * ***
7435362 TTGACTGGTTATAGTTTCAAACAGAGAAAACGGTACAAGAAAAACTT
1 TTGACTAGTTATAGTTTCAAACAGAGAAAACGGAACAAGAAAAAAGG
* *
7435409 TTGACTAGTTATAGTTTCAAACAGAGAAAATGGAAGAAGAAAAAAAGG
1 TTGACTAGTTATAGTTTCAAACAGAGAAAACGGAACAAG-AAAAAAGG
7435457 TTG
1 TTG
7435460 TTAGTTTGTT
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
45 2 0.02
46 1 0.01
47 116 0.91
48 9 0.07
ACGTcount: A:0.46, C:0.09, G:0.21, T:0.24
Consensus pattern (47 bp):
TTGACTAGTTATAGTTTCAAACAGAGAAAACGGAACAAGAAAAAAGG
Found at i:7442271 original size:28 final size:28
Alignment explanation
Indices: 7442229--7442289 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
7442219 ATACGGATAC
*
7442229 CATAACCTAAAGCTTGTGTGAGCCATTT
1 CATAACCTAAAGCTTGTGTAAGCCATTT
*
7442257 CATAACCTAAGGCTTGTGTAAGCCATTT
1 CATAACCTAAAGCTTGTGTAAGCCATTT
7442285 CATAA
1 CATAA
7442290 ATAAAAACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (28 bp):
CATAACCTAAAGCTTGTGTAAGCCATTT
Found at i:7442300 original size:28 final size:28
Alignment explanation
Indices: 7442229--7442303 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
7442219 ATACGGATAC
* * *
7442229 CATAACCTAAAGCTTGTGTGAGCCATTT
1 CATAACATAAAACTTGTGTAAGCCATTT
* **
7442257 CATAACCTAAGGCTTGTGTAAGCCATTT
1 CATAACATAAAACTTGTGTAAGCCATTT
7442285 CATAA-ATAAAAACTTGTGT
1 CATAACAT-AAAACTTGTGT
7442304 GGGCAAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 40 0.98
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (28 bp):
CATAACATAAAACTTGTGTAAGCCATTT
Found at i:7442555 original size:22 final size:22
Alignment explanation
Indices: 7442530--7442571 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7442520 TGGATGGTAT
7442530 AATATGCTATAT-TGAATGGTTG
1 AATATG-TATATGTGAATGGTTG
*
7442552 AATATGTATATGTGATTGGT
1 AATATGTATATGTGAATGGT
7442572 ATTATGAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.43
Consensus pattern (22 bp):
AATATGTATATGTGAATGGTTG
Found at i:7450954 original size:12 final size:12
Alignment explanation
Indices: 7450937--7450987 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
7450927 ACTTAATCAC
7450937 TTTAATATTAAA
1 TTTAATATTAAA
*
7450949 TTTAAT-CTAATA
1 TTTAATATTAA-A
*
7450961 TTTATTAGATTAAA
1 TTTA--ATATTAAA
7450975 TTTAATATTAAA
1 TTTAATATTAAA
7450987 T
1 T
7450988 CTTATTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
11 3 0.10
12 19 0.61
14 6 0.19
15 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:7450966 original size:21 final size:21
Alignment explanation
Indices: 7450942--7450983 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7450932 ATCACTTTAA
*
7450942 TATTAAATTTAATCTAATATT
1 TATTAAATTAAATCTAATATT
* *
7450963 TATTAGATTAAATTTAATATT
1 TATTAAATTAAATCTAATATT
7450984 AAATCTTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TATTAAATTAAATCTAATATT
Found at i:7453227 original size:11 final size:11
Alignment explanation
Indices: 7453213--7453260 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
7453203 ATTAATCATT
7453213 TAATAATAAAA
1 TAATAATAAAA
7453224 TAATAATAAAAA
1 TAATAAT-AAAA
**
7453236 TCTTAATAAAA
1 TAATAATAAAA
* *
7453247 TATTAATTAAA
1 TAATAATAAAA
7453258 TAA
1 TAA
7453261 CATTTATCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
11 22 0.71
12 9 0.29
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:7466448 original size:38 final size:40
Alignment explanation
Indices: 7466397--7466474 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
7466387 TTTTATCCTA
* * *
7466397 AAAAAAGAATTT-AAAA-ATAAGATAATCTTGGGTTGTTG
1 AAAAAAGAATTTAAAAAGAGAAGATAAACATGGGTTGTTG
7466435 AAAAAAGAATTTAAAAAGAGAAGATAAACATGGGTTGTTG
1 AAAAAAGAATTTAAAAAGAGAAGATAAACATGGGTTGTTG
7466475 GATTTACCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 12 0.34
39 4 0.11
40 19 0.54
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.27
Consensus pattern (40 bp):
AAAAAAGAATTTAAAAAGAGAAGATAAACATGGGTTGTTG
Found at i:7468505 original size:25 final size:25
Alignment explanation
Indices: 7468468--7468518 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
7468458 TTTCCTCTCA
* *
7468468 TCATTCACTAACCTTTCATTTTCCC
1 TCATTCACTAACCCTCCATTTTCCC
7468493 TCATTCA-TAAACCCTCCATTTTCCC
1 TCATTCACT-AACCCTCCATTTTCCC
7468518 T
1 T
7468519 TTATTTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.22, C:0.37, G:0.00, T:0.41
Consensus pattern (25 bp):
TCATTCACTAACCCTCCATTTTCCC
Found at i:7469653 original size:14 final size:14
Alignment explanation
Indices: 7469634--7469673 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7469624 TTGTTTGATT
7469634 GAAAATGGTTTCCA
1 GAAAATGGTTTCCA
* *
7469648 GAAAATGATTTCTA
1 GAAAATGGTTTCCA
*
7469662 GAAAATAGTTTC
1 GAAAATGGTTTC
7469674 GGAAAAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (14 bp):
GAAAATGGTTTCCA
Found at i:7479341 original size:23 final size:21
Alignment explanation
Indices: 7479315--7479355 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
7479305 AATTAAATTA
7479315 TATATATTATGATTTTAGTAT
1 TATATATTATGATTTTAGTAT
7479336 TATATATTATGATTTTAGTA
1 TATATATTATGATTTTAGTA
7479356 AATTCATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (21 bp):
TATATATTATGATTTTAGTAT
Found at i:7479390 original size:59 final size:59
Alignment explanation
Indices: 7479318--7479633 Score: 252
Period size: 59 Copynumber: 5.3 Consensus size: 59
7479308 TAAATTATAT
* *
7479318 ATATTATG-ATTTTAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTA
* * ** * * * *
7479376 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTA-ATAATAATTATTTTA
1 ATATTAAGAATTTTATT--ATTATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTTA
* *
7479438 A-ATT-ATATTTTATATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTT-TATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTA
* * * * * * *
7479496 ATATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTA-ATAATAATTATGTTA
1 ATATTAAGAATTTTATT--ATTATATATTATGATTTTAGTAAATTCATATAAGAA-TAT-TTA
** * * *
7479558 A-ATT-A-TCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGA
1 ATATTAAGAATTTTAT--TATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTA
*
7479616 TTATTAAGAATTTTATTA
1 ATATTAAGAATTTTATTA
7479634 AATTGTATGT
Statistics
Matches: 195, Mismatches: 44, Indels: 37
0.71 0.16 0.13
Matches are distributed among these distances:
58 14 0.07
59 71 0.36
60 36 0.18
61 65 0.33
62 9 0.05
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (59 bp):
ATATTAAGAATTTTATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTA
Found at i:7479469 original size:120 final size:120
Alignment explanation
Indices: 7479330--7479681 Score: 589
Period size: 120 Copynumber: 2.9 Consensus size: 120
7479320 ATTATGATTT
7479330 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
*
7479395 ATTATATATTTTTATTA-AATTATATTTAATAATAATTATTTTAAATTATATTTTA
66 ATTATATATTTTAATTATAA-TATATTTAATAATAATTATTTTAAATTATATTTTA
*
7479450 TATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* *
7479515 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTTA
66 ATTATATATTTTAATTATAATATATTTAATAATAATTATTTTAAATTATATTTTA
* * * *
7479570 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* *
7479635 ATTGTATGTTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 ATTATATATTTTAATTATAATATATTTAATAATAATTAT-TTTAAAT
7479682 ATGATTAAAT
Statistics
Matches: 218, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
120 210 0.96
121 8 0.04
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (120 bp):
TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
ATTATATATTTTAATTATAATATATTTAATAATAATTATTTTAAATTATATTTTA
Found at i:7479539 original size:16 final size:16
Alignment explanation
Indices: 7479518--7479563 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7479508 TTATTAAATT
7479518 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
7479534 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
7479549 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
7479564 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:7479539 original size:18 final size:17
Alignment explanation
Indices: 7479385--7479419 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7479375 AATATTAAGA
7479385 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
7479402 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
7479420 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 1 0.06
18 16 0.94
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:7479903 original size:45 final size:44
Alignment explanation
Indices: 7479823--7479913 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 44
7479813 ACCTCTATTC
7479823 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* *
7479867 CATTCAACCAAACA-ATTGATTTGCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
7479912 CA
1 CA
7479914 CCTCTAATCC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.37
45 26 0.60
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:7479917 original size:16 final size:16
Alignment explanation
Indices: 7479892--7479945 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
7479882 TTGATTTGCT
*
7479892 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
7479908 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
7479924 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
7479940 AATACA
1 ATTACA
7479946 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.28, C:0.35, G:0.04, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:7483538 original size:14 final size:14
Alignment explanation
Indices: 7483519--7483547 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7483509 AATTGCAAAC
7483519 ATCAAAAGCCCGCT
1 ATCAAAAGCCCGCT
7483533 ATCAAAAGCCCGCT
1 ATCAAAAGCCCGCT
7483547 A
1 A
7483548 GGAATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.34, G:0.14, T:0.14
Consensus pattern (14 bp):
ATCAAAAGCCCGCT
Found at i:7484528 original size:14 final size:14
Alignment explanation
Indices: 7484509--7484536 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7484499 CGTAAAATAA
7484509 GGAAAATATTTTAC
1 GGAAAATATTTTAC
7484523 GGAAAATATTTTAC
1 GGAAAATATTTTAC
7484537 TGGCAAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
GGAAAATATTTTAC
Found at i:7485885 original size:33 final size:33
Alignment explanation
Indices: 7485848--7485911 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
7485838 TTATTCAAAG
* *
7485848 AATAAAGGGAAAATATTTAATAAAATAGAAAAA
1 AATAAAGAGAAAATATTGAATAAAATAGAAAAA
* *
7485881 AATAAAGATAAATTATTGAATAAAATAGAAA
1 AATAAAGAGAAAATATTGAATAAAATAGAAA
7485912 CATTAATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (33 bp):
AATAAAGAGAAAATATTGAATAAAATAGAAAAA
Found at i:7488207 original size:84 final size:84
Alignment explanation
Indices: 7488102--7488713 Score: 998
Period size: 84 Copynumber: 7.3 Consensus size: 84
7488092 AAGGACCCCA
* * * *
7488102 GTGGAATCAGCACTTTGCAACCACCTTATAATCAATTATACGGGGAATCAGTACATAGCAACCAC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
* *
7488167 TTTCACAATTAAGGATACA
66 TTTCACAATCAAGGATACG
7488186 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
* *
7488251 TTTTACAGTCAAGGATACG
66 TTTCACAATCAAGGATACG
*
7488270 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATTAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
7488335 -TTCACAATCAAGGATACG
66 TTTCACAATCAAGGATACG
*
7488353 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACTGGGAATCAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
*
7488418 TTTCACAATCAAGGATACA
66 TTTCACAATCAAGGATACG
* * *
7488437 GTGGAATCAGCACTTAGCAACCACCTTATAATCTATGATACAGGGAATCAGCACATAGCAACCCA
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
7488502 TTTCACAATCAAGGATACG
66 TTTCACAATCAAGGATACG
*
7488521 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
7488586 TTTCACAATCAAGGATACG
66 TTTCACAATCAAGGATACG
*
7488605 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATTAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
*** * *
7488670 TTT-TTTATCAATGATTCG
66 TTTCACAATCAAGGATACG
*
7488688 G-GGAATCTGCACTTAGCAACC-CCTTA
1 GTGGAATCAGCACTTAGCAACCACCTTA
7488714 CATTCAAAGA
Statistics
Matches: 499, Mismatches: 28, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
81 5 0.01
82 19 0.04
83 90 0.18
84 385 0.77
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (84 bp):
GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
TTTCACAATCAAGGATACG
Found at i:7490369 original size:20 final size:19
Alignment explanation
Indices: 7490334--7490371 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7490324 ATCAATTAAA
*
7490334 AAATAATTATAGATAATAC
1 AAATAATTATAAATAATAC
7490353 AAATAATATATAAATAATA
1 AAATAAT-TATAAATAATA
7490372 TTTAATGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (19 bp):
AAATAATTATAAATAATAC
Found at i:7491912 original size:30 final size:30
Alignment explanation
Indices: 7491878--7491940 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
7491868 TCTTAGCAAT
* *
7491878 AAATTTTGGAGGTATCTAATTAAAATTTCA
1 AAATTTTGAAGGTATCTAATGAAAATTTCA
* * *
7491908 AAATTTTTAAGGTGTTTAATGAAAATTTCA
1 AAATTTTGAAGGTATCTAATGAAAATTTCA
7491938 AAA
1 AAA
7491941 AATATTGGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.40
Consensus pattern (30 bp):
AAATTTTGAAGGTATCTAATGAAAATTTCA
Found at i:7494163 original size:23 final size:22
Alignment explanation
Indices: 7494137--7494180 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7494127 AAATTTCATA
*
7494137 GTTAAGAAAATTTATTTATTTTC
1 GTTAAGAAAA-TTAATTATTTTC
**
7494160 GTTATTAAAATTAATTATTTT
1 GTTAAGAAAATTAATTATTTT
7494181 TATAATTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (22 bp):
GTTAAGAAAATTAATTATTTTC
Found at i:7500292 original size:27 final size:27
Alignment explanation
Indices: 7500223--7500286 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
7500213 ATAAAAAATA
*
7500223 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
7500250 ACCAAAATATTATAAATTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
7500277 ACCAAAATAT
1 ACCAAAATAT
7500287 ACTAAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (27 bp):
ACCAAAATATTATAAATTTTTTTATTT
Found at i:7500373 original size:27 final size:27
Alignment explanation
Indices: 7500343--7500419 Score: 136
Period size: 27 Copynumber: 2.9 Consensus size: 27
7500333 GGCCAATCAC
*
7500343 ATTGGCGGCACCAAAGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAATGTG
7500370 ATTGGCGGCACCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAATGTG
*
7500397 ATTGGTGGCACCAATGGTGCCAA
1 ATTGGCGGCACCAATGGTGCCAA
7500420 AGGACTAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAATGTG
Found at i:7500755 original size:19 final size:19
Alignment explanation
Indices: 7500731--7500794 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
7500721 ATTAAAATAG
7500731 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
7500750 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
* *
7500768 TATCATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
7500787 TTTAATTT
1 TTTAATTT
7500795 TAAAAAATAA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
18 14 0.39
19 22 0.61
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:7500903 original size:82 final size:82
Alignment explanation
Indices: 7500807--7500957 Score: 302
Period size: 82 Copynumber: 1.8 Consensus size: 82
7500797 AAAAATAAAT
7500807 TAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAACATAAACATGTTAG
1 TAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAACATAAACATGTTAG
7500872 ACTAAATAATGGAAACA
66 ACTAAATAATGGAAACA
7500889 TAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAACATAAACATGTTAG
1 TAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAACATAAACATGTTAG
7500954 ACTA
66 ACTA
7500958 TTTTAATTAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 69 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (82 bp):
TAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAACATAAACATGTTAG
ACTAAATAATGGAAACA
Found at i:7501065 original size:18 final size:19
Alignment explanation
Indices: 7501026--7501121 Score: 124
Period size: 19 Copynumber: 5.2 Consensus size: 19
7501016 ATTTTATATT
7501026 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
7501045 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
7501063 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
7501082 TTAAATGAGAATA-ATTTA
1 TTAAATGAAAATAGAGTTA
*
7501100 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
7501119 TTA
1 TTA
7501122 CTTAATTAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
18 30 0.47
19 34 0.53
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:7501067 original size:37 final size:37
Alignment explanation
Indices: 7501026--7501121 Score: 174
Period size: 37 Copynumber: 2.6 Consensus size: 37
7501016 ATTTTATATT
* *
7501026 TTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
7501063 TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
7501100 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
7501122 CTTAATTAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAATTTA
Found at i:7501848 original size:27 final size:26
Alignment explanation
Indices: 7501796--7501858 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
7501786 ATTTTTTGGT
*
7501796 ATATTTTAGTAAATAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAATTATA
7501822 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAA-TTATA
7501849 ATATTTTGGT
1 ATATTTTGGT
7501859 TATTTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 20 0.57
27 15 0.43
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (26 bp):
ATATTTTGGTAAATAAAAAAATTATA
Found at i:7509872 original size:48 final size:44
Alignment explanation
Indices: 7509820--7509936 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 44
7509810 TTACATATTT
* *
7509820 AAAATATTGAAATATTATTATTTCATTGAATGAAAACCAAATGAAATA
1 AAAATATTGAAATATT-TTATTTAATT---TGAAAACAAAATGAAATA
** * *
7509868 AAAATATAAAAATA-TTTATTTAATTTGAAAATAAAATGAATTA
1 AAAATATTGAAATATTTTATTTAATTTGAAAACAAAATGAAATA
*
7509911 AAAATA-TGCAAATATTTTATTAAATT
1 AAAATATTG-AAATATTTTATTTAATT
7509937 AAATATTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
43 26 0.45
44 10 0.17
46 9 0.16
47 1 0.02
48 12 0.21
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (44 bp):
AAAATATTGAAATATTTTATTTAATTTGAAAACAAAATGAAATA
Found at i:7517845 original size:46 final size:46
Alignment explanation
Indices: 7517778--7517870 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
7517768 CGGGTGAAAA
*
7517778 TTGTAAATGAAAAGGTGATGATATATCAAATGTTGGCAAAATAATG
1 TTGTAAATGAAAAGGTGATGATATATCAAATGTTGGAAAAATAATG
7517824 TTGTAAATGAAAAGGTGATGATATATCAAATGTTGGAAAAATAATG
1 TTGTAAATGAAAAGGTGATGATATATCAAATGTTGGAAAAATAATG
7517870 T
1 T
7517871 ATATGATTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.31
Consensus pattern (46 bp):
TTGTAAATGAAAAGGTGATGATATATCAAATGTTGGAAAAATAATG
Found at i:7539110 original size:61 final size:61
Alignment explanation
Indices: 7538982--7539125 Score: 162
Period size: 61 Copynumber: 2.3 Consensus size: 61
7538972 AGCTGTGTGA
* * * * * **
7538982 CAGGTCGTGTAACTCACTATTTAGAATTATAGGCGCACGGGCTAGGGACATGGGTGTGTGCC
1 CAGGCCGTGTAACTCACT-GTTAGAATTAAAGGCACACGGGCTAGGGACATGAGCATGTGCC
* * * *
7539044 CAGGCCGTGTAACTTACTGTTAGAATTAAAGGCATAGGGGCTAGGGACATGAGCATGTGTC
1 CAGGCCGTGTAACTCACTGTTAGAATTAAAGGCACACGGGCTAGGGACATGAGCATGTGCC
* *
7539105 TAGGCCATGTAACTCACTGTT
1 CAGGCCGTGTAACTCACTGTT
7539126 TTGGAATTAG
Statistics
Matches: 68, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
61 52 0.76
62 16 0.24
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (61 bp):
CAGGCCGTGTAACTCACTGTTAGAATTAAAGGCACACGGGCTAGGGACATGAGCATGTGCC
Found at i:7542460 original size:14 final size:14
Alignment explanation
Indices: 7542441--7542472 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7542431 CTTTCTTTAT
*
7542441 TTTATGTGGTAAAC
1 TTTATGTGGAAAAC
7542455 TTTATGTGGAAAAC
1 TTTATGTGGAAAAC
7542469 TTTA
1 TTTA
7542473 AATTTGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (14 bp):
TTTATGTGGAAAAC
Found at i:7545546 original size:27 final size:27
Alignment explanation
Indices: 7545515--7545851 Score: 320
Period size: 27 Copynumber: 12.5 Consensus size: 27
7545505 GTATAACTAA
7545515 CATTTTACCCTATGGGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* * * *
7545542 TATTTTACACTATAGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* *
7545569 CATTTTACCCTATGGAGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* * *
7545596 TATTTTACCCTATGGGGATATTTCATT
1 CATTTTACCCTATGGGGGTATTTCAGT
* *
7545623 CATTTTACCCTGTGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* * *
7545650 TATTTTACCCTGTGGGGGTATTTTAGT
1 CATTTTACCCTATGGGGGTATTTCAGT
* *
7545677 TATTTTACCCTATAGGGGTATTTC-GAT
1 CATTTTACCCTATGGGGGTATTTCAG-T
* * *
7545704 CATTTTATCGTGTGGGGGTATTTC-GAT
1 CATTTTACCCTATGGGGGTATTTCAG-T
* ** * *
7545731 TATTTTACCCTGCGAGGGTATTTCAAT
1 CATTTTACCCTATGGGGGTATTTCAGT
* ***
7545758 CATTTTACCCCACAAGGGTATTTC-GAT
1 CATTTTACCCTATGGGGGTATTTCAG-T
* * * * *
7545785 CATTTTATCCTGTGGAGATATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCAGT
*
7545812 CATTTTACCCTATAGGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCAGT
7545839 CATTTTACCCTAT
1 CATTTTACCCTAT
7545852 TTTGGGGTTT
Statistics
Matches: 252, Mismatches: 54, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.00
27 250 0.99
28 1 0.00
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCAGT
Found at i:7545628 original size:81 final size:80
Alignment explanation
Indices: 7545515--7545851 Score: 362
Period size: 81 Copynumber: 4.2 Consensus size: 80
7545505 GTATAACTAA
* * *
7545515 CATTTTACCCTATGGGGGTATTTC-AGTTATTTTA-CACTATAGGGGTATTTCGGTCATTTTACC
1 CATTTTACCCTAT-GGGGTATTTCGA-TCATTTTATC-CTGTGGGGGTATTTCGGTCATTTTACC
*
7545578 CTATGGAGGTATTTCGGT
63 CTATGGAGGTATTTCAGT
* * *
7545596 TATTTTACCCTATGGGGATATTTC-ATTCATTTTACCCTGTGGGGGTATTTCGGTTATTTTACCC
1 CATTTTACCCTATGGGG-TATTTCGA-TCATTTTATCCTGTGGGGGTATTTCGGTCATTTTACCC
* * *
7545660 TGTGGGGGTATTTTAGT
64 TATGGAGGTATTTCAGT
* * * *
7545677 TATTTTACCCTATAGGGGTATTTCGATCATTTTATCGTGTGGGGGTATTTCGATTATTTTACCC-
1 CATTTTACCCTAT-GGGGTATTTCGATCATTTTATCCTGTGGGGGTATTTCGGTCATTTTACCCT
*
7545741 -TGCGAGGGTATTTCAAT
65 ATG-GA-GGTATTTCAGT
* ** * *
7545758 CATTTTACCCCACAAGGGTATTTCGATCATTTTATCCTGTGGAGATATTTCGGTCATTTTACCCT
1 CATTTTACCCTA-TGGGGTATTTCGATCATTTTATCCTGTGGGGGTATTTCGGTCATTTTACCCT
7545823 ATAGG-GGTATTTCAGT
65 AT-GGAGGTATTTCAGT
7545839 CATTTTACCCTAT
1 CATTTTACCCTAT
7545852 TTTGGGGTTT
Statistics
Matches: 218, Mismatches: 28, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
79 2 0.01
80 5 0.02
81 202 0.93
82 6 0.03
83 2 0.01
84 1 0.00
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.43
Consensus pattern (80 bp):
CATTTTACCCTATGGGGTATTTCGATCATTTTATCCTGTGGGGGTATTTCGGTCATTTTACCCTA
TGGAGGTATTTCAGT
Done.