Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 30 of 170
Found at i:8127339 original size:128 final size:127
Alignment explanation
Indices: 8127189--8127616 Score: 669
Period size: 128 Copynumber: 3.3 Consensus size: 127
8127179 GAGCAGAACG
* *
8127189 AAAACCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTA
1 AAAA-CACAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTA
* * *
8127254 AGCAGTAGTGGAGCTGACAGAAGAAACCAATCCTATCTTCCTGAAGTTGCAATGGAGCGGATT
65 AGCAGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
*
8127317 AACAACACAGATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTA
1 AA-AACACAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTA
8127382 AGCAGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
65 AGCAGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
* *
8127445 AAAAACACAAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCCAGTCTTATCTCCCTA
1 -AAAACACAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTA
*
8127510 AACAGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTG-ATGTGGAGCGGATT
65 AGCAGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCA-GTGGAGCGGATT
* ** * * *
8127573 AAAATGATGAATTTTATCTATCTAAAGTTGCAGTAGAGCAGATC
1 AAAA-CACAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATC
8127617 ATATCAAACA
Statistics
Matches: 278, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
127 5 0.02
128 269 0.97
129 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (127 bp):
AAAACACAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTAA
GCAGTAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
Found at i:8127421 original size:43 final size:44
Alignment explanation
Indices: 8127372--8127555 Score: 116
Period size: 44 Copynumber: 4.3 Consensus size: 44
8127362 CATCCAGTCT
*
8127372 TATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAGAAACCAATCC
1 TATCTCCCTGAAGCAGCAGTGGAGCAGACAGAAGAAACCAATCC
** * * * *
8127415 TATCTCCCTGAAGTTGCAGTGGAGCGGATTA-AA-AACACAAATCT
1 TATCTCCCTGAAGCAGCAGTGGAGCAGA-CAGAAGAA-ACCAATCC
* * * * * * * *
8127459 TATCTCTCTGAAGTTA-CAGT--AG-AG-TAGATCGCATCCAGTCT
1 TATCTCCCTGAAG-CAGCAGTGGAGCAGACAGA-AGAAACCAATCC
* *
8127500 TATCTCCCT-AAACAGTAGTGGAGCAGACAGAAGAAACCAATCC
1 TATCTCCCTGAAGCAGCAGTGGAGCAGACAGAAGAAACCAATCC
8127543 TATCTCCCTGAAG
1 TATCTCCCTGAAG
8127556 TTGATGTGGA
Statistics
Matches: 102, Mismatches: 26, Indels: 25
0.67 0.17 0.16
Matches are distributed among these distances:
39 3 0.03
40 6 0.06
41 14 0.14
42 5 0.05
43 29 0.28
44 43 0.42
45 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (44 bp):
TATCTCCCTGAAGCAGCAGTGGAGCAGACAGAAGAAACCAATCC
Found at i:8127463 original size:44 final size:43
Alignment explanation
Indices: 8127155--8127487 Score: 137
Period size: 44 Copynumber: 7.8 Consensus size: 43
8127145 AATATTGTAG
** *
8127155 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-ACGAAAACCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATA--AAAA-CACAA
* * *** *
8127199 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC-C-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACACAA
* ** * * * *
8127240 GTCTTATCTCCCT-AAGCAGTAGTGGAGCTGACAGAAGAA-ACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATA-AA-AACACAA
* * * * * *
8127283 ATCCTATCTTCCTGAAGTTGCAATGGAGCGGATTAACAACACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAAACACAA
* * * * *** *
8127327 ATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATC-C-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACACAA
* ** * * *
8127368 GTCTTATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAGAA-ACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATA-AA-AACACAA
* *
8127411 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAAACACAA
* * * *
8127455 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
8127488 CGCATCCAGT
Statistics
Matches: 202, Mismatches: 71, Indels: 33
0.66 0.23 0.11
Matches are distributed among these distances:
40 26 0.13
41 23 0.11
42 6 0.03
43 33 0.16
44 98 0.49
45 16 0.08
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACACAA
Found at i:8127683 original size:44 final size:44
Alignment explanation
Indices: 8127617--8127742 Score: 148
Period size: 44 Copynumber: 2.9 Consensus size: 44
8127607 AGAGCAGATC
* *
8127617 ATAT-CAAACATTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGA
1 ATATGCAAACCTTATCTCCCTGAAGTTGCAGTAGAGTAGGTTGA
* * *
8127660 AGTA-GCAAACCTTATCCCCCTGAAGTTGCAGTAGGGCAGGTTGA
1 A-TATGCAAACCTTATCTCCCTGAAGTTGCAGTAGAGTAGGTTGA
** * *
8127704 ATATGCAAGTCTTATCTTCCTGAAGTTGCAGTGGAGTAG
1 ATATGCAAACCTTATCTCCCTGAAGTTGCAGTAGAGTAG
8127743 ACTGAAGCTG
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
43 3 0.04
44 65 0.96
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (44 bp):
ATATGCAAACCTTATCTCCCTGAAGTTGCAGTAGAGTAGGTTGA
Found at i:8132635 original size:30 final size:30
Alignment explanation
Indices: 8132599--8132660 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
8132589 TTATAAATGT
8132599 ACCAAAACTATTTAAACCCAAGTCAATTGC
1 ACCAAAACTATTTAAACCCAAGTCAATTGC
8132629 ACCAAAACTATTTAAACCCAAGTCAATTGC
1 ACCAAAACTATTTAAACCCAAGTCAATTGC
8132659 AC
1 AC
8132661 TAGTAACACC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.44, C:0.27, G:0.06, T:0.23
Consensus pattern (30 bp):
ACCAAAACTATTTAAACCCAAGTCAATTGC
Found at i:8140517 original size:13 final size:13
Alignment explanation
Indices: 8140499--8140524 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8140489 GGGTCGAGTG
8140499 GGCCACATGGGCA
1 GGCCACATGGGCA
8140512 GGCCACATGGGCA
1 GGCCACATGGGCA
8140525 TGTGAGCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.38, T:0.08
Consensus pattern (13 bp):
GGCCACATGGGCA
Found at i:8142016 original size:3 final size:3
Alignment explanation
Indices: 8142002--8142044 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
8141992 CCTTATTTTC
* * *
8142002 CTT CTT CAT CTT CTT CCT CTT CCT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
8142045 CTACACCTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.02, C:0.40, G:0.00, T:0.58
Consensus pattern (3 bp):
CTT
Found at i:8144130 original size:39 final size:39
Alignment explanation
Indices: 8144058--8144215 Score: 194
Period size: 39 Copynumber: 4.1 Consensus size: 39
8144048 TCAATACACT
**
8144058 GGCACACAA-CCTGCTAGGCACATAGCCCGAATAATCACC
1 GGCACA-AAGCCTGCTAGGCACATAGCCTAAATAATCACC
* * * *
8144097 GGTACAAAGCTTGCTAGGCACATA-ACTCAAATAATCACT
1 GGCACAAAGCCTGCTAGGCACATAGCCT-AAATAATCACC
*
8144136 GGCACAAAGCCTGTTAGGCACATAGCCTAAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCTAAATAATCACC
* * *
8144175 AGCACAAAGCCAGCTAGGCACATAGCCTGAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCTAAATAATCACC
8144214 GG
1 GG
8144216 ATTTCTATTT
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
38 3 0.03
39 95 0.95
40 2 0.02
ACGTcount: A:0.36, C:0.29, G:0.18, T:0.16
Consensus pattern (39 bp):
GGCACAAAGCCTGCTAGGCACATAGCCTAAATAATCACC
Found at i:8146476 original size:23 final size:23
Alignment explanation
Indices: 8146438--8146488 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
8146428 AGGTTGTAGT
* *
8146438 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
8146461 TGTAATACCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
8146484 AGTAA
1 TGTAA
8146489 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:8152532 original size:12 final size:11
Alignment explanation
Indices: 8152501--8152540 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 11
8152491 ATAAACATAA
8152501 ATTCAAA-CAT
1 ATTCAAATCAT
8152511 -TTCAAATCAT
1 ATTCAAATCAT
8152521 ATTCATAATCAT
1 ATTCA-AATCAT
8152533 ATT-AAATC
1 ATTCAAATC
8152541 CAAACCAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 6 0.22
10 7 0.26
11 5 0.19
12 9 0.33
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTCAAATCAT
Found at i:8153829 original size:39 final size:39
Alignment explanation
Indices: 8153772--8153929 Score: 244
Period size: 39 Copynumber: 4.1 Consensus size: 39
8153762 TCAATACACT
*
8153772 GGCACACAGCCTGCTAGGCACATAGCCCGAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
* *
8153811 GGCACAAAGCCTGGTAGGCACATAGCCCAAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
* *
8153850 AGCACAAAGCCTGCTAGGCACATAGCCTGAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
* * *
8153889 GGCATAAAACCTGCTAGGCACATAGCCTGAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
8153928 GG
1 GG
8153930 ATTTCTATTT
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.34, C:0.31, G:0.20, T:0.15
Consensus pattern (39 bp):
GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
Found at i:8155242 original size:39 final size:39
Alignment explanation
Indices: 8155171--8155325 Score: 202
Period size: 39 Copynumber: 4.0 Consensus size: 39
8155161 TAATACACTG
* ** * *
8155171 GCACACAGCCTGCTAGGCGTATGGCCCAAATAATCACCA
1 GCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACCA
* *
8155210 GAATAAAGCCTGCTAGGCACATAGCCCGAATAATCACCA
1 GCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACCA
* *** *
8155249 GCACAAAGCCTGCTAAGCACATAGATTGAATAATCACCG
1 GCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACCA
8155288 GCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
1 GCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
8155326 GGATTTCTAT
Statistics
Matches: 98, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.35, C:0.30, G:0.19, T:0.15
Consensus pattern (39 bp):
GCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACCA
Found at i:8163534 original size:21 final size:21
Alignment explanation
Indices: 8163510--8163551 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8163500 CTACAATTCT
* *
8163510 AGGCCTAGTTACCAATACCTA
1 AGGCATAGGTACCAATACCTA
*
8163531 AGGCATAGGTACCGATACCTA
1 AGGCATAGGTACCAATACCTA
8163552 GCCTATTGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (21 bp):
AGGCATAGGTACCAATACCTA
Found at i:8175119 original size:2 final size:2
Alignment explanation
Indices: 8175114--8175141 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8175104 GTGTGTGTGT
8175114 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8175142 TTCAATTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8178867 original size:48 final size:48
Alignment explanation
Indices: 8178796--8178897 Score: 186
Period size: 48 Copynumber: 2.1 Consensus size: 48
8178786 TTGTACATAG
8178796 TCATCAGACAAGTTTCACACACATGTATCTTTCATCTCATTTTTCAAC
1 TCATCAGACAAGTTTCACACACATGTATCTTTCATCTCATTTTTCAAC
*
8178844 TCATCAGGCAAGTTTCACACACATGTATCTTTCATCTCATTTTTCAAC
1 TCATCAGACAAGTTTCACACACATGTATCTTTCATCTCATTTTTCAAC
*
8178892 TTATCA
1 TCATCA
8178898 AGTAACATCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.38
Consensus pattern (48 bp):
TCATCAGACAAGTTTCACACACATGTATCTTTCATCTCATTTTTCAAC
Found at i:8179176 original size:25 final size:25
Alignment explanation
Indices: 8179122--8179350 Score: 114
Period size: 25 Copynumber: 9.2 Consensus size: 25
8179112 TAGCTCTTTC
* *
8179122 GAGCCATATAACGGGAAGCTCATGTA
1 GAGCCATATATCGGGAAGCTCAT-AA
*
8179148 -AGCCGTATATCGGGAAGCTCATAA
1 GAGCCATATATCGGGAAGCTCATAA
** * *
8179172 GAGCCGCA-ATCAGGTAGCTC-TAGA
1 GAGCCATATATCGGGAAGCTCATA-A
8179196 GAGCCAT-TAATCGGGAAGCTCATGAGA
1 GAGCCATAT-ATCGGGAAGCTCAT-A-A
* * * *
8179223 GAGCC-TTTAATCAGAAAGCTCGTAA
1 GAGCCATAT-ATCGGGAAGCTCATAA
* * *
8179248 GAGCCATATGTTAGGG-TGCTCATAA
1 GAGCCATAT-ATCGGGAAGCTCATAA
* * * * *
8179273 GAGCTAAATAACGGGAAGCTCGTGA
1 GAGCCATATATCGGGAAGCTCATAA
* *
8179298 GAGCCAAATATCAGGAAGCTCA-AGA
1 GAGCCATATATCGGGAAGCTCATA-A
* * *
8179323 GAGCCA-ATATTGGGATGCTCATGA
1 GAGCCATATATCGGGAAGCTCATAA
8179347 GAGC
1 GAGC
8179351 TAATAATGGG
Statistics
Matches: 154, Mismatches: 38, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
23 2 0.01
24 37 0.24
25 87 0.56
26 7 0.05
27 21 0.14
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.20
Consensus pattern (25 bp):
GAGCCATATATCGGGAAGCTCATAA
Found at i:8179251 original size:52 final size:49
Alignment explanation
Indices: 8179156--8179254 Score: 119
Period size: 52 Copynumber: 2.0 Consensus size: 49
8179146 TAAGCCGTAT
**
8179156 ATCGGGAAGCTCATAAGAGCCGCAATCAGGTAGCTCTAGAGAGCCATTA
1 ATCGGGAAGCTCATAAGAGCCGCAATCAGAAAGCTCTAGAGAGCCATTA
**
8179205 ATCGGGAAGCTCATGAGAGAGCCTTTAATCAGAAAGCTCGTA-AGAGCCAT
1 ATCGGGAAGCTCAT-A-AGAGCC-GCAATCAGAAAGCTC-TAGAGAGCCAT
8179255 ATGTTAGGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
49 14 0.33
50 1 0.02
51 6 0.14
52 19 0.45
53 2 0.05
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.19
Consensus pattern (49 bp):
ATCGGGAAGCTCATAAGAGCCGCAATCAGAAAGCTCTAGAGAGCCATTA
Found at i:8179342 original size:24 final size:24
Alignment explanation
Indices: 8179285--8179361 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
8179275 GCTAAATAAC
** *
8179285 GGGAAGCTCGTGAGAGCCAAATATC
1 GGGAAGCTCAAGAGAGCC-AATATT
*
8179310 AGGAAGCTCAAGAGAGCCAATATT
1 GGGAAGCTCAAGAGAGCCAATATT
* * * *
8179334 GGGATGCTCATGAGAGCTAATAAT
1 GGGAAGCTCAAGAGAGCCAATATT
8179358 GGGA
1 GGGA
8179362 CACTCTTGCT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 28 0.65
25 15 0.35
ACGTcount: A:0.35, C:0.16, G:0.31, T:0.18
Consensus pattern (24 bp):
GGGAAGCTCAAGAGAGCCAATATT
Found at i:8187242 original size:3 final size:3
Alignment explanation
Indices: 8187234--8187273 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
8187224 GATGCAGAGC
8187234 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8187274 AGAAATGACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8194608 original size:26 final size:26
Alignment explanation
Indices: 8194572--8194659 Score: 124
Period size: 26 Copynumber: 3.3 Consensus size: 26
8194562 TTACTCAAAT
8194572 AAATTTCTGACAATTTTACCCCCGATA
1 AAATTT-TGACAATTTTACCCCCGATA
* **
8194599 AAATTTTGACAAATTTA-CCCTTAGTA
1 AAATTTTGACAATTTTACCCCCGA-TA
8194625 AAATTTTGACAATTTTACCCCCGATA
1 AAATTTTGACAATTTTACCCCCGATA
8194651 AAATTTTGA
1 AAATTTTGA
8194660 GAAATTTCGT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
25 4 0.08
26 39 0.74
27 10 0.19
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (26 bp):
AAATTTTGACAATTTTACCCCCGATA
Found at i:8199920 original size:26 final size:26
Alignment explanation
Indices: 8199870--8199921 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
8199860 TAATTAAAAT
* * * *
8199870 TAAAATTAAAATTAGTTTTTTTTAAA
1 TAAAATTAAAACTAATTGTTATTAAA
8199896 TAAAATTAAAACTAATTGTTATTAAA
1 TAAAATTAAAACTAATTGTTATTAAA
8199922 ATTAATTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (26 bp):
TAAAATTAAAACTAATTGTTATTAAA
Found at i:8199939 original size:16 final size:16
Alignment explanation
Indices: 8199902--8199941 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
8199892 TAAATAAAAT
* *
8199902 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
8199918 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
8199934 TAAAATTA
1 TAAAATTA
8199942 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:8200000 original size:66 final size:67
Alignment explanation
Indices: 8199930--8200072 Score: 252
Period size: 68 Copynumber: 2.1 Consensus size: 67
8199920 AAATTAATTG
*
8199930 TTAGTAAAATTATCAAATTATTAATTG-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
1 TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
8199994 GA
66 GA
*
8199996 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTG-ATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
8200061 TGA
65 TGA
8200064 TTAGTAAAA
1 TTAGTAAAA
8200073 CAAACTTGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
66 26 0.36
68 46 0.64
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (67 bp):
TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
GA
Found at i:8200026 original size:9 final size:9
Alignment explanation
Indices: 8200014--8200041 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8200004 TTTATCAAAT
8200014 TATTAATTG
1 TATTAATTG
8200023 TATTAATTG
1 TATTAATTG
8200032 TATTAATTG
1 TATTAATTG
8200041 T
1 T
8200042 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:8201829 original size:3 final size:3
Alignment explanation
Indices: 8201821--8201868 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
8201811 TACTGTATTA
8201821 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
8201869 CTGGTAGTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8207394 original size:9 final size:9
Alignment explanation
Indices: 8207380--8207468 Score: 56
Period size: 9 Copynumber: 9.7 Consensus size: 9
8207370 ACACGTGACA
8207380 AAAAATAAT
1 AAAAATAAT
8207389 AAAAAT-A-
1 AAAAATAAT
*
8207396 AAAATTAAT
1 AAAAATAAT
* *
8207405 AAAAGTTAT
1 AAAAATAAT
8207414 AAAAATAATT
1 AAAAATAA-T
**
8207424 AAATTTTAAT
1 AAA-AATAAT
*
8207434 AAAAATATT
1 AAAAATAAT
*
8207443 AAAAATTAGAA
1 AAAAA-TA-AT
*
8207454 AAAAATTAT
1 AAAAATAAT
8207463 AAAAAT
1 AAAAAT
8207469 CGTAAATTTA
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
7 5 0.08
8 2 0.03
9 34 0.57
10 11 0.18
11 8 0.13
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAAATAAT
Found at i:8207405 original size:10 final size:10
Alignment explanation
Indices: 8207392--8207468 Score: 63
Period size: 9 Copynumber: 7.9 Consensus size: 10
8207382 AAATAATAAA
8207392 AATAAAAATT
1 AATAAAAATT
*
8207402 AATAAAAGTT
1 AATAAAAATT
8207412 -ATAAAAA-T
1 AATAAAAATT
**
8207420 AATTAAATTTT
1 AA-TAAAAATT
8207431 AATAAAAA-T
1 AATAAAAATT
*
8207440 ATTAAAAATT
1 AATAAAAATT
*
8207450 AGAAAAAAATT
1 A-ATAAAAATT
8207461 -ATAAAAAT
1 AATAAAAAT
8207469 CGTAAATTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
8 1 0.02
9 22 0.42
10 19 0.37
11 10 0.19
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (10 bp):
AATAAAAATT
Found at i:8207418 original size:287 final size:288
Alignment explanation
Indices: 8206839--8207418 Score: 1076
Period size: 288 Copynumber: 2.0 Consensus size: 288
8206829 ATTCATAAAA
8206839 AAAAAGGGATTAAGAGTGTAAAAAGACCCTTAAACTTTTTCAAAAAAAGCAATTAAGCTCCTTTT
1 AAAAAGGGATTAAGAGTGTAAAAAGACCCTTAAACTTTTTCAAAAAAAGCAATTAAGCTCCTTTT
*
8206904 TTTTTTCTTTTTTTTGCACTCACTTAGGTACTTTAACTTTTACAATACTGTAATACAAAGACACT
66 TTTTTTCTTTTTTTTGCACTCACTTAGGTACTTTAACTTTTACAATACTATAATACAAAGACACT
**
8206969 TAATTTTTTTTTAAAAATCAATTAAGTCCCTACTTTTTTTTGCACTCAATTGGGTACTTGAACCA
131 TAAAATTTTTTTAAAAATCAATTAAGTCCCTACTTTTTTTTGCACTCAATTGGGTACTTGAACCA
* *
8207034 CCCCTAATTTTTTTAGTTAAAACCACCACGTGTAACAACCACAACGTGACATGTGACAAAAAATA
196 CCCCTAATTTTTTCAGTTAAAACCACCACGTGTAACAACCACAACGTGACACGTGACAAAAAATA
8207099 ATAAAAATAAAAATTAATAAAAGTTAAT
261 ATAAAAATAAAAATTAATAAAAGTTAAT
8207127 AAAAAGGGATTAAGAGTGTAAAAAGACCCTTAAACTTTTTCAAAAAAAAGCAATTAAGCT-CTTT
1 AAAAAGGGATTAAGAGTGTAAAAAGACCCTTAAACTTTTTC-AAAAAAAGCAATTAAGCTCCTTT
8207191 TTTTTTTC-TTTTTTTGCACTCACTTAGGTACTTTAACTTTTACAATACTATAATACAAAGACAC
65 TTTTTTTCTTTTTTTTGCACTCACTTAGGTACTTTAACTTTTACAATACTATAATACAAAGACAC
8207255 TTAAAATTTTTTTAAAAATCAATTAAGTCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAAC
130 TTAAAATTTTTTTAAAAATCAATTAAGTCCCTAC-TTTTTTTTGCACTCAATTGGGTACTTGAAC
8207320 CACCCCTAATTTTTTCAGTTAAAACCACCACGTGTAACAACCACAACGTGACACGTGACAAAAAA
194 CACCCCTAATTTTTTCAGTTAAAACCACCACGTGTAACAACCACAACGTGACACGTGACAAAAAA
8207385 TAATAAAAATAAAAATTAATAAAAGTT-AT
259 TAATAAAAATAAAAATTAATAAAAGTTAAT
8207414 AAAAA
1 AAAAA
8207419 TAATTAAATT
Statistics
Matches: 285, Mismatches: 5, Indels: 5
0.97 0.02 0.02
Matches are distributed among these distances:
287 94 0.33
288 173 0.61
289 18 0.06
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (288 bp):
AAAAAGGGATTAAGAGTGTAAAAAGACCCTTAAACTTTTTCAAAAAAAGCAATTAAGCTCCTTTT
TTTTTTCTTTTTTTTGCACTCACTTAGGTACTTTAACTTTTACAATACTATAATACAAAGACACT
TAAAATTTTTTTAAAAATCAATTAAGTCCCTACTTTTTTTTGCACTCAATTGGGTACTTGAACCA
CCCCTAATTTTTTCAGTTAAAACCACCACGTGTAACAACCACAACGTGACACGTGACAAAAAATA
ATAAAAATAAAAATTAATAAAAGTTAAT
Found at i:8207426 original size:19 final size:19
Alignment explanation
Indices: 8207380--8207466 Score: 69
Period size: 19 Copynumber: 4.8 Consensus size: 19
8207370 ACACGTGACA
8207380 AAAAATAA-TAAAAA-TA-
1 AAAAATAATTAAAAATTAT
* *
8207396 AAAATTAA-TAAAAGTTAT
1 AAAAATAATTAAAAATTAT
**
8207414 AAAAATAATTAAATTTTAAT
1 AAAAATAATTAAAAATT-AT
*
8207434 AAAAAT-ATTAAAAATTAG
1 AAAAATAATTAAAAATTAT
8207452 AAAAA-AATTATAAAA
1 AAAAATAATTA-AAAA
8207467 ATCGTAAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
16 12 0.21
17 2 0.04
18 17 0.30
19 18 0.32
20 8 0.14
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATAATTAAAAATTAT
Found at i:8207445 original size:29 final size:25
Alignment explanation
Indices: 8207380--8207448 Score: 68
Period size: 29 Copynumber: 2.6 Consensus size: 25
8207370 ACACGTGACA
*
8207380 AAAAATAATAAAAATAAAAATTAAT
1 AAAAATATTAAAAATAAAAATTAAT
*
8207405 AAAAGT-TATAAAAATAATTAAATTTTAAT
1 AAAAATAT-TAAAAATAA--AAA--TTAAT
8207434 AAAAATATTAAAAAT
1 AAAAATATTAAAAAT
8207449 TAGAAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
25 14 0.40
27 3 0.09
29 17 0.49
30 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.30
Consensus pattern (25 bp):
AAAAATATTAAAAATAAAAATTAAT
Found at i:8207798 original size:19 final size:19
Alignment explanation
Indices: 8207776--8207908 Score: 105
Period size: 19 Copynumber: 6.8 Consensus size: 19
8207766 TTTTTGATGG
8207776 ATTTTATAATTTTTATAAA
1 ATTTTATAATTTTTATAAA
*
8207795 ATTTTACAATATTTTATAAA
1 ATTTTATAAT-TTTTATAAA
*
8207815 ATTTT-TCTATTTTTAT-AA
1 ATTTTAT-AATTTTTATAAA
* *
8207833 TTTTTAATAATTTTTA-ATA
1 ATTTT-ATAATTTTTATAAA
8207852 ATTTT-TAATTTTTTTTATTAAA
1 ATTTTATAA---TTTTTA-TAAA
*
8207874 ATTTAATAATTTTTAT-AA
1 ATTTTATAATTTTTATAAA
*
8207892 ATTTTATTGATTTTTAT
1 ATTTTA-TAATTTTTAT
8207909 TTTTTAAAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
17 3 0.03
18 13 0.14
19 37 0.41
20 29 0.32
22 6 0.07
23 3 0.03
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (19 bp):
ATTTTATAATTTTTATAAA
Found at i:8207837 original size:10 final size:10
Alignment explanation
Indices: 8207777--8207896 Score: 61
Period size: 10 Copynumber: 12.2 Consensus size: 10
8207767 TTTTGATGGA
8207777 TTTTATAA-T
1 TTTTATAATT
**
8207786 TTTTATAAAA
1 TTTTATAATT
* *
8207796 TTTTACAATA
1 TTTTATAATT
*
8207806 TTTTATAAAAT
1 TTTTAT-AATT
*
8207817 TTTTCT-A-T
1 TTTTATAATT
8207825 TTTTATAATT
1 TTTTATAATT
*
8207835 TTTAATAATT
1 TTTTATAATT
*
8207845 TTTAATAATT
1 TTTTATAATT
* *
8207855 TTTAAT-TTT
1 TTTTATAATT
**
8207864 TTTTATTAAAA
1 TTTTA-TAATT
*
8207875 TTTAATAA-T
1 TTTTATAATT
8207884 TTTTATAAATT
1 TTTTAT-AATT
8207895 TT
1 TT
8207897 ATTGATTTTT
Statistics
Matches: 86, Mismatches: 17, Indels: 14
0.74 0.15 0.12
Matches are distributed among these distances:
8 6 0.07
9 21 0.24
10 45 0.52
11 14 0.16
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTATAATT
Found at i:8207844 original size:27 final size:26
Alignment explanation
Indices: 8207830--8207922 Score: 72
Period size: 26 Copynumber: 3.7 Consensus size: 26
8207820 TCTATTTTTA
8207830 TAATTTTTAATAATTTTTAATAATTTT
1 TAATTTTTAA-AATTTTTAATAATTTT
*
8207857 TAATTTTT----TTTATTAA-AATTTAA
1 TAATTTTTAAAATTT-TTAATAATTT-T
* *
8207880 TAATTTTTATAAA-TTTTATTGATTTT
1 TAATTTTTA-AAATTTTTAATAATTTT
*
8207906 TATTTTTTAAAATTTTT
1 TAATTTTTAAAATTTTT
8207923 GCCACATGTC
Statistics
Matches: 52, Mismatches: 5, Indels: 19
0.68 0.07 0.25
Matches are distributed among these distances:
22 8 0.15
23 12 0.23
25 3 0.06
26 15 0.29
27 14 0.27
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (26 bp):
TAATTTTTAAAATTTTTAATAATTTT
Found at i:8207906 original size:20 final size:19
Alignment explanation
Indices: 8207776--8207897 Score: 88
Period size: 20 Copynumber: 6.3 Consensus size: 19
8207766 TTTTTGATGG
*
8207776 ATTTT-ATAATTTTTATAAA
1 ATTTTAATATTTTTTAT-AA
*
8207795 ATTTTACA-ATATTTTATAAA
1 ATTTTA-ATATTTTTTAT-AA
**
8207815 ATTTTTCTA-TTTTTATAA
1 ATTTTAATATTTTTTATAA
* *
8207833 TTTTTAATAATTTTTAATAA
1 ATTTTAAT-ATTTTTTATAA
* *
8207853 TTTTTAATTTTTTTTATTAA
1 ATTTTAATATTTTTTA-TAA
* *
8207873 AATTTAATAATTTTTATAA
1 ATTTTAATATTTTTTATAA
8207892 ATTTTA
1 ATTTTA
8207898 TTGATTTTTA
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
18 7 0.09
19 26 0.32
20 47 0.58
21 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTAATATTTTTTATAA
Found at i:8208249 original size:92 final size:92
Alignment explanation
Indices: 8208081--8208249 Score: 205
Period size: 92 Copynumber: 1.8 Consensus size: 92
8208071 ATCAGGGACT
* * *
8208081 TAATTGCTTTTCTTTAAAAAAGTTTGAGGGTTTTTTTAATGCATTTAAAAGTTCAAATACCTAAT
1 TAATTGCTTTTCTTTAAAAAAGTTTGAAGGTCTTTTTAATACATTTAAAAGTTCAAATACCTAAT
** *
8208146 TGCGTGCAAAAAAAAAAAACAATAGTC
66 TAAGTGAAAAAAAAAAAAACAATAGTC
* * * * * * *
8208173 TAATTGCTTTT-TTTGAAAAAGTTTGAAGGTCTTTTTGATATATTTTAAAAGTTTAAGTATCTTA
1 TAATTGCTTTTCTTTAAAAAAGTTTGAAGGTCTTTTTAATACA-TTTAAAAGTTCAAATACCTAA
8208237 TTAAGTGAAAAAA
65 TTAAGTGAAAAAA
8208250 GAAGCAGGGG
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
91 25 0.40
92 38 0.60
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (92 bp):
TAATTGCTTTTCTTTAAAAAAGTTTGAAGGTCTTTTTAATACATTTAAAAGTTCAAATACCTAAT
TAAGTGAAAAAAAAAAAAACAATAGTC
Found at i:8210317 original size:24 final size:24
Alignment explanation
Indices: 8210289--8210335 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8210279 AGAAATAATC
* * *
8210289 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAGTCAAACACTGATTATTTG
8210313 TTTCAGTCAAACACTGATTATTT
1 TTTCAGTCAAACACTGATTATTT
8210336 TAGATTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.49
Consensus pattern (24 bp):
TTTCAGTCAAACACTGATTATTTG
Found at i:8214684 original size:24 final size:24
Alignment explanation
Indices: 8214656--8214711 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
8214646 TATTCTGTTA
*
8214656 GCCTTTGTGGCGTATTATAATTTG
1 GCCTTTGTGGCGTATTATAATTGG
* *
8214680 GCCTTTATGGCGTATTCTAATTGG
1 GCCTTTGTGGCGTATTATAATTGG
8214704 GCCTTTGT
1 GCCTTTGT
8214712 AGCATTCTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.14, C:0.16, G:0.25, T:0.45
Consensus pattern (24 bp):
GCCTTTGTGGCGTATTATAATTGG
Found at i:8221600 original size:24 final size:24
Alignment explanation
Indices: 8221572--8221621 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
8221562 ACTAGCATAG
* *
8221572 TATTT-TTTATTTTATCTTTTATTT
1 TATTTATTTA-TTTATCTATCATTT
8221596 TATTTATTTATTTATCTATCATTT
1 TATTTATTTATTTATCTATCATTT
8221620 TA
1 TA
8221622 ATATCATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (24 bp):
TATTTATTTATTTATCTATCATTT
Found at i:8231831 original size:225 final size:226
Alignment explanation
Indices: 8231397--8231847 Score: 771
Period size: 225 Copynumber: 2.0 Consensus size: 226
8231387 GATGTGTAGA
* * * *
8231397 TGTAAACTGAAAAATATATAAGATTTTTCCTATATAATTCATTACCTTTTTACTTAAATTTGTTG
1 TGTAAACGGAAAAATATATAAGATTTTTCCTATATAATTAATCACCTTTTTACTTAAAATTGTTG
8231462 TTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGAAAAAAATATGAAATTAGGACATAGA
66 TTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGAAAAAAATATGAAATTAGGACATAGA
*
8231527 AATTATTAAAATGTGATTTTATACCTTATTATATAGTTTTCATGCATAAAATGGCTTATTTTATA
131 AATTATTAAAATGTGATTTTATACCTTATTATATAGTTTTCATGCATAAAATGGCTTATTTAATA
*
8231592 TTAATTTGAGCATATTATATTTTTAAGCTAT
196 TTAATTTAAGCATATTATATTTTTAAGCTAT
*
8231623 TGTAAACGGAAAAATATA-AAGGATTTTTCTTATATAATTAATCACCTTTTTACTTAAAATTGTT
1 TGTAAACGGAAAAATATATAA-GATTTTTCCTATATAATTAATCACCTTTTTACTTAAAATTGTT
**
8231687 GTTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATG-TGAAAATATGAAATTAGGACATAG
65 GTTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGAAAAAAATATGAAATTAGGACATAG
***
8231751 AAATTATTAAAATGTGATTTTATGTTTTATTATATAGTTTTCATGCATAAAATGGCTTATTTAAT
130 AAATTATTAAAATGTGATTTTATACCTTATTATATAGTTTTCATGCATAAAATGGCTTATTTAAT
8231816 ATTAATTTAAGCATATTATATTTTTAAGCTAT
195 ATTAATTTAAGCATATTATATTTTTAAGCTAT
8231848 GAAGTGGGCC
Statistics
Matches: 212, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
225 116 0.55
226 96 0.45
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (226 bp):
TGTAAACGGAAAAATATATAAGATTTTTCCTATATAATTAATCACCTTTTTACTTAAAATTGTTG
TTAAAACCAAGTAATTGTTTAATAAATTAATGAAATATGAAAAAAATATGAAATTAGGACATAGA
AATTATTAAAATGTGATTTTATACCTTATTATATAGTTTTCATGCATAAAATGGCTTATTTAATA
TTAATTTAAGCATATTATATTTTTAAGCTAT
Found at i:8232033 original size:199 final size:199
Alignment explanation
Indices: 8231784--8232166 Score: 734
Period size: 199 Copynumber: 1.9 Consensus size: 199
8231774 GTTTTATTAT
8231784 ATAGTTTTCATGCATAAAATGGCTTATTTAATATTAATTTAAGCATATTATATTTTTAAGCTATG
1 ATAGTTTTCATGCATAAAATGGCTTATTTAATATTAATTTAAGCATATTATATTTTTAAGCTATG
8231849 AAGTGGGCCATGCATGATTAAATTAAATAATAAAATATAATTTTATACTTTAATAATTCATTTTA
66 AAGTGGGCCATGCATGATTAAATTAAATAATAAAATATAA-TTTATA-TTTAATAATTCATTTTA
8231914 AATATGTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTTAAATTCAT
129 AATATGTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTTAAATTCAT
8231979 TTGGTC
194 TTGGTC
8231985 ATAGTTTTCATGCATAAAAT-GCTTATTT-ATATTAATTTAAGCATATTATATTTTTAAGCTATG
1 ATAGTTTTCATGCATAAAATGGCTTATTTAATATTAATTTAAGCATATTATATTTTTAAGCTATG
8232048 AAGTGGGCCATGCATGATTAAATTAAATAATAAAATATAATTTATATTTAATAATTCATTTTAAA
66 AAGTGGGCCATGCATGATTAAATTAAATAATAAAATATAATTTATATTTAATAATTCATTTTAAA
8232113 TATGTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGT
131 TATGTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGT
8232167 GGTTAAATTA
Statistics
Matches: 182, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
197 73 0.40
198 6 0.03
199 75 0.41
200 8 0.04
201 20 0.11
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (199 bp):
ATAGTTTTCATGCATAAAATGGCTTATTTAATATTAATTTAAGCATATTATATTTTTAAGCTATG
AAGTGGGCCATGCATGATTAAATTAAATAATAAAATATAATTTATATTTAATAATTCATTTTAAA
TATGTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTTAAATTCATTT
GGTC
Found at i:8258800 original size:44 final size:44
Alignment explanation
Indices: 8258620--8259552 Score: 222
Period size: 44 Copynumber: 21.2 Consensus size: 44
8258610 TATATTGGAA
* *
8258620 AGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * **
8258664 AAATAAGATCTAC-AC-TCTTCAACCTTCTCCTCTGCTGCCCAGGG
1 AGATAAGAT-T-CGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
8258708 AGACAAAGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGA-TAAGATTCGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
8258752 AGATAAGATTCGCCGTCTTCAATCTGCTCCGCTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * *
8258796 AGATAAGA-TCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGG
1 AGATAAGATTC-GCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
8258840 AGACAAGGCTT-GGTGGC-TCAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTC-AATCTGC-T-CCACTACTGCTTAGG-G
* * *
8258884 AGATTAGATTCGCCGTCTTCGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
8258928 AGACAAGGCTT-GGTGGC-TCAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTC-AATCTGC-T-CCACTACTGCTTAGG-G
* *
8258972 AGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * *
8259016 AGATAAGA-TCTACAATCTTCAA-CTTTCTCCACTGCTGCTCAGGG
1 AGATAAGATTC-GCCGTCTTCAATC-TGCTCCACTACTGCTTAGGG
* * ** * *
8259060 AGACAAGGCTT-GGTGGC-TCAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTC-AATCTGC-T-CCACTACTGCTTAGG-G
* ** *
8259104 AGATAAGATTCGCAGTCTTTGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * *
8259148 AGATAAGA-TCTACAATCTTCAA-CTTTCTCCACTGCTGCTCAGGG
1 AGATAAGATTC-GCCGTCTTCAATC-TGCTCCACTACTGCTTAGGG
* * ** *
8259192 AGACAAGGCTT-GGTGGC-TCAAATCTGCTTCCCACTA-T-CTT-GGG
1 AGATAA-GATTCGCCGTCTTC-AATCTGC-T-CCACTACTGCTTAGGG
* * *
8259235 AAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGTTTAGGG
1 -AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
**** * * * *
8259280 AGATAAGA-TCTAAAATCTTCAACCTTCTTCACTACTGCTCAGGG
1 AGATAAGATTC-GCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
8259324 AGACAAGGCTT-GGTGGC-TCAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTC-AATCTGC-T-CCACTACTGCTTAGG-G
* * *
8259368 AGATAAGATTCACCGTCTTCGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * ** * *
8259412 AGATAAGA-TCTACAATCTTCAACCTTCTCCACGGCTGCTCAGTG
1 AGATAAGATTC-GCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * **
8259456 AGACAAGGCTT-GGTGGC-TCAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAA-GATTCGCCGTCTTC-AATCTGC-T-CCACTACTGCTTAGGG
* * *
8259500 AGATAAGATTTGCCTTCTCCAATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
8259544 AGATAAGAT
1 AGATAAGAT
8259553 CACTGGTTAC
Statistics
Matches: 613, Mismatches: 192, Indels: 168
0.63 0.20 0.17
Matches are distributed among these distances:
42 40 0.07
43 74 0.12
44 407 0.66
45 53 0.09
46 39 0.06
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (44 bp):
AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:8258929 original size:132 final size:132
Alignment explanation
Indices: 8258596--8258930 Score: 553
Period size: 132 Copynumber: 2.5 Consensus size: 132
8258586 TATCGGCTTT
* * *
8258596 AATCTGCTCCCCACTATATTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * *
8258661 GGGAAATAAGATCTACACTCTTCAACCTTCTCCTCTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
*
8258726 TA
131 CA
* *
8258728 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCGCTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
8258793 GGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
8258858 CA
131 CA
* *
8258860 AATCTGCTTCCCACTATCTTGGAAAGATTAGATTCGCCGTCTTCGATCTGCTTCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
8258925 GGGAGA
66 GGGAGA
8258931 CAAGGCTTGG
Statistics
Matches: 188, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 188 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
CA
Found at i:8258932 original size:88 final size:88
Alignment explanation
Indices: 8258822--8259018 Score: 349
Period size: 88 Copynumber: 2.2 Consensus size: 88
8258812 CTTCAACCTT
* *
8258822 CTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGA
* *
8258887 TTAGATTCGCCGTCTTCGATCTG
66 TAAGATTCGCCGTCTTCGATCTA
*
8258910 CTTCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGA
8258975 TAAGATTCGCCGTCTTCGATCTA
66 TAAGATTCGCCGTCTTCGATCTA
8258998 CTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGA
8259019 TAAGATCTAC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 103 1.00
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.28
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGA
TAAGATTCGCCGTCTTCGATCTA
Found at i:8258965 original size:220 final size:220
Alignment explanation
Indices: 8258704--8259150 Score: 795
Period size: 220 Copynumber: 2.0 Consensus size: 220
8258694 TCTGCTGCCC
*
8258704 AGGGAGACAAAGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTC
1 AGGGAGACAAAGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTC
* *
8258769 TTCAATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGC
66 TTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGC
* *
8258834 TCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATTAGATTCGCCG
131 TCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAG
* *
8258899 TCTTCGATCTGCTTCACTACTGCTT
196 TCTTCGATCTACTCCACTACTGCTT
*
8258924 AGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTC
1 AGGGAGACAAAGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTC
* *
8258989 TTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACTTTCTCCACTGCTGC
66 TTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGC
8259054 TCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAG
131 TCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAG
*
8259119 TCTTTGATCTACTCCACTACTGCTT
196 TCTTCGATCTACTCCACTACTGCTT
8259144 AGGGAGA
1 AGGGAGA
8259151 TAAGATCTAC
Statistics
Matches: 216, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
220 216 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (220 bp):
AGGGAGACAAAGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTC
TTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGC
TCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAG
TCTTCGATCTACTCCACTACTGCTT
Found at i:8259136 original size:132 final size:132
Alignment explanation
Indices: 8258913--8259553 Score: 1102
Period size: 132 Copynumber: 4.9 Consensus size: 132
8258903 CGATCTGCTT
* *
8258913 CACTACTGCTTAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
1 CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
*
8258978 GATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACTTTC
66 GATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTC
8259043 TC
131 TC
8259045 CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
1 CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
* * *
8259110 GATTCGCAGTCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACTTTC
66 GATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTC
8259175 TC
131 TC
*
8259177 CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGGAAGATAA
1 CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
* *
8259242 GATTCGCCGTCTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTAAAATCTTCAACCTTC
66 GATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTC
*
8259307 TT
131 TC
*
8259309 CACTACTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
1 CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
*
8259374 GATTCACCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTC
66 GATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTC
8259439 TC
131 TC
* * *
8259441 CACGGCTGCTCAGTGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTAGAAAGATAA
1 CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
* * * * *
8259506 GATTTGCCTTCTCCAATCTGCTCCACTACTGCTTAGGGAGATAAGATC
66 GATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATC
8259554 ACTGGTTACC
Statistics
Matches: 482, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 482 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (132 bp):
CACTGCTGCTCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAA
GATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTC
TC
Found at i:8259247 original size:352 final size:352
Alignment explanation
Indices: 8258596--8259282 Score: 1176
Period size: 352 Copynumber: 2.0 Consensus size: 352
8258586 TATCGGCTTT
*
8258596 AATCTGCTCCCCACTATATTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTCCCCACTATATTGGAAAGATAAGATTCGCCATCTTCGATCTACTCCACTACTGCTTA
* *
8258661 GGGAAATAAGATCTACACTCTTCAACCTTCTCCTCTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
66 GGGAAATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
* * * *
8258726 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCGCTACTGCT
131 CAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAGTCTTCAATCTACTCCACTACTGCT
8258791 TAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGG
196 TAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGG
* * *
8258856 CTCAAATCTGCTTCCCACTATCTTGGAAAGATTAGATTCGCCGTCTTCGATCTGCTTCACTACTG
261 CTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTG
8258921 CTTAGGGAGACAAGGCTTGGTGGCTCA
326 CTTAGGGAGACAAGGCTTGGTGGCTCA
* * *
8258948 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTA
1 AATCTGCTCCCCACTATATTGGAAAGATAAGATTCGCCATCTTCGATCTACTCCACTACTGCTTA
* * * *
8259013 GGGAGATAAGATCTACAATCTTCAACTTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAAATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
**
8259078 CAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAGTCTTTGATCTACTCCACTACTGCT
131 CAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAGTCTTCAATCTACTCCACTACTGCT
*
8259143 TAGGGAGATAAGATCTACAATCTTCAACTTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGG
196 TAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGG
*
8259208 CTCAAATCTGCTTCCCACTATCTTGGGAAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTG
261 CTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTG
*
8259273 TTTAGGGAGA
326 CTTAGGGAGA
8259283 TAAGATCTAA
Statistics
Matches: 313, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
352 313 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (352 bp):
AATCTGCTCCCCACTATATTGGAAAGATAAGATTCGCCATCTTCGATCTACTCCACTACTGCTTA
GGGAAATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCCCAGGGAGACAAAGCTTGGTGGCT
CAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCAGTCTTCAATCTACTCCACTACTGCT
TAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGG
CTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTG
CTTAGGGAGACAAGGCTTGGTGGCTCA
Found at i:8260693 original size:29 final size:29
Alignment explanation
Indices: 8260661--8260722 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
8260651 TCTCCTTTTT
* * *
8260661 TTTTTGGAAATCCGAGCTCTCTTTGTGGG
1 TTTTTGGAAATCCGAGCGCCCTTTGCGGG
8260690 TTTTTGGAAATCCGAGCGCCCTTTGCGGG
1 TTTTTGGAAATCCGAGCGCCCTTTGCGGG
8260719 TTTT
1 TTTT
8260723 CACTTTGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.13, C:0.19, G:0.27, T:0.40
Consensus pattern (29 bp):
TTTTTGGAAATCCGAGCGCCCTTTGCGGG
Found at i:8272327 original size:58 final size:58
Alignment explanation
Indices: 8272237--8272354 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
8272227 TTCGTCTGGC
* *
8272237 CAAAGGTCCGGTCATCGGCCACCGCGTCGGCCGCCGATATCTGGCACCGGCGCCACCG
1 CAAAGGTCCGGTCATCGGCCACCACGCCGGCCGCCGATATCTGGCACCGGCGCCACCG
8272295 CAAAGGTCCGGTCATCGGCCACCACGCCGGCCGCCGATATCTGGCACCGGCGCCACCG
1 CAAAGGTCCGGTCATCGGCCACCACGCCGGCCGCCGATATCTGGCACCGGCGCCACCG
8272353 CA
1 CA
8272355 TGCGGTGGCC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.17, C:0.42, G:0.30, T:0.11
Consensus pattern (58 bp):
CAAAGGTCCGGTCATCGGCCACCACGCCGGCCGCCGATATCTGGCACCGGCGCCACCG
Found at i:8280518 original size:5 final size:5
Alignment explanation
Indices: 8280508--8280585 Score: 156
Period size: 5 Copynumber: 15.6 Consensus size: 5
8280498 CCTGCCAAGT
8280508 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
8280558 ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATA
8280586 CCCAATTAGG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 73 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:8286175 original size:6 final size:6
Alignment explanation
Indices: 8286164--8286193 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
8286154 GAGCATCTAT
8286164 GAAAAG GAAAAG GAAAAG GAAAAG GAAAAG
1 GAAAAG GAAAAG GAAAAG GAAAAG GAAAAG
8286194 AATGCTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (6 bp):
GAAAAG
Found at i:8288760 original size:13 final size:14
Alignment explanation
Indices: 8288734--8288767 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
8288724 CAACAGATTG
8288734 TTTTTTAATCTCAAA
1 TTTTTTAA-CTCAAA
8288749 TTTTTTAA-TCAAA
1 TTTTTTAACTCAAA
8288762 TTTTTT
1 TTTTTT
8288768 CAACCTCGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
15 8 0.42
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTTTTAACTCAAA
Found at i:8291267 original size:20 final size:21
Alignment explanation
Indices: 8291223--8291273 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
8291213 TGTCAATCCT
* * *
8291223 ATGAATAGTGGGGTCAAGTTC
1 ATGAACAGTGGAGTCAAGATC
8291244 ATGAACAGTGGAGTCAA-ATC
1 ATGAACAGTGGAGTCAAGATC
8291264 ATGAACAGTG
1 ATGAACAGTG
8291274 ATAGTATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (21 bp):
ATGAACAGTGGAGTCAAGATC
Found at i:8293142 original size:3 final size:3
Alignment explanation
Indices: 8293128--8293170 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
8293118 TTAAGTACCT
*
8293128 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8293171 AATGCAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:8297620 original size:24 final size:22
Alignment explanation
Indices: 8297592--8297677 Score: 60
Period size: 24 Copynumber: 3.9 Consensus size: 22
8297582 GATAGTGCTT
8297592 TATTAATTTAATATTAATATCAAA
1 TATTAATTTAATATTAATAT--AA
8297616 TATTACA-TTAA-ATTAA-AT-A
1 TATTA-ATTTAATATTAATATAA
8297635 T-TT-ATTTAGATATTAATATGAGA
1 TATTAATTTA-ATATTAATAT-A-A
8297658 TATTAAATTTAAT-TTAATAT
1 TATT-AATTTAATATTAATAT
8297678 TTATCTAGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 22
0.70 0.00 0.30
Matches are distributed among these distances:
16 1 0.02
17 3 0.06
18 3 0.06
19 7 0.14
20 2 0.04
22 2 0.04
23 7 0.14
24 18 0.35
25 3 0.06
26 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (22 bp):
TATTAATTTAATATTAATATAA
Found at i:8297626 original size:103 final size:103
Alignment explanation
Indices: 8297511--8297712 Score: 298
Period size: 103 Copynumber: 2.0 Consensus size: 103
8297501 TAATGAATTT
*
8297511 AATATTAAATTAAATTTAAA-ATTTATCTAGATACTAATATGAGATATTTAATTTAATTTAATAC
1 AATATTAAATTAAA-TTAAATATTTATCTAGATACTAATATGAGATATTAAATTTAATTTAATAC
* * *
8297575 TTATTTAGATAGTGCTTTATTAATTTAATATTAATATCA
65 TTATCTAGATAATACTTTATTAATTTAATATTAATATCA
* * * *
8297614 AATATTACATTAAATTAAATATTTATTTAGATATTAATATGAGATATTAAATTTAATTTAATATT
1 AATATTAAATTAAATTAAATATTTATCTAGATACTAATATGAGATATTAAATTTAATTTAATACT
* *
8297679 TATCTAGATAATATTTTGTTAATTTAATATTAAT
66 TATCTAGATAATACTTTATTAATTTAATATTAAT
8297713 GTGATTAATT
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 5 0.06
103 83 0.94
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (103 bp):
AATATTAAATTAAATTAAATATTTATCTAGATACTAATATGAGATATTAAATTTAATTTAATACT
TATCTAGATAATACTTTATTAATTTAATATTAATATCA
Found at i:8297648 original size:42 final size:42
Alignment explanation
Indices: 8297592--8297688 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
8297582 GATAGTGCTT
* *
8297592 TATTAATTTA-ATATTAATATCAAATATTACATTAAATTAAA
1 TATTTATTTAGATATTAATATCAAATATTAAATTAAATTAAA
* * * *
8297633 TATTTATTTAGATATTAATATGAGATATTAAATTTAATTTAA
1 TATTTATTTAGATATTAATATCAAATATTAAATTAAATTAAA
*
8297675 TATTTATCTAGATA
1 TATTTATTTAGATA
8297689 ATATTTTGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 9 0.19
42 39 0.81
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.47
Consensus pattern (42 bp):
TATTTATTTAGATATTAATATCAAATATTAAATTAAATTAAA
Found at i:8298822 original size:38 final size:37
Alignment explanation
Indices: 8298770--8298844 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 37
8298760 GGTTTAACCT
8298770 TACAATCTCCCTTAAGATTTATACCCCAAAATCTTAAGA
1 TACAATCTCCCTTAAGATTTATA-CCC-AAATCTTAAGA
* *
8298809 TACAA-CTCCCTTAAGGTTTCTACCCAAATCTTAAGA
1 TACAATCTCCCTTAAGATTTATACCCAAATCTTAAGA
8298845 ATTAACCATC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 11 0.32
37 3 0.09
38 15 0.44
39 5 0.15
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (37 bp):
TACAATCTCCCTTAAGATTTATACCCAAATCTTAAGA
Found at i:8303350 original size:24 final size:25
Alignment explanation
Indices: 8303318--8303378 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 25
8303308 ACAATTGCAA
* *
8303318 TTCAGATACATAATCAGATG-TAAT
1 TTCATATACATAATCAGATGCAAAT
8303342 TTCATATACATAATCAGATGCAAAT
1 TTCATATACATAATCAGATGCAAAT
8303367 TTCATATACATA
1 TTCATATACATA
8303379 TTCATATCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 19 0.56
25 15 0.44
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (25 bp):
TTCATATACATAATCAGATGCAAAT
Found at i:8305098 original size:14 final size:14
Alignment explanation
Indices: 8305079--8305108 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8305069 CCATGATTCC
8305079 ACCACATAACCTTA
1 ACCACATAACCTTA
8305093 ACCACATAACCTTA
1 ACCACATAACCTTA
8305107 AC
1 AC
8305109 TAACAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCACATAACCTTA
Found at i:8314004 original size:59 final size:56
Alignment explanation
Indices: 8313940--8314097 Score: 180
Period size: 59 Copynumber: 2.8 Consensus size: 56
8313930 TTGTTTTTAA
* *
8313940 ATTTTAATAAGATTATTATTAAATATAATTTAATAAAAAATAATAAATAATTTAATCAT
1 ATTTTAATAA-ATTATTATTAAATATAATTTAAT--AAAATAATAAATAATTTAATAAC
* *
8313999 ATTTTAACACAATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAC
1 ATTTTAATA-AATTATTATTAAATATAATTTAATAAAATAATAAATAATTTAATAAC
*
8314056 ATTCTTAAT--ATTATTATTAAAATATGAA-TTAA-AAAATCATAA
1 ATT-TTAATAAATTATTATT-AAATAT-AATTTAATAAAATAATAA
8314098 TATATAATAT
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
55 17 0.19
56 10 0.11
57 25 0.28
58 4 0.05
59 31 0.35
60 1 0.01
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (56 bp):
ATTTTAATAAATTATTATTAAATATAATTTAATAAAATAATAAATAATTTAATAAC
Found at i:8314114 original size:23 final size:21
Alignment explanation
Indices: 8314083--8314125 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8314073 TAAAATATGA
8314083 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
8314106 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
8314126 CTACTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:8319194 original size:13 final size:13
Alignment explanation
Indices: 8319176--8319206 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8319166 CTTAAGTGTA
8319176 GTATATTCATTTT
1 GTATATTCATTTT
*
8319189 GTATATTCGTTTT
1 GTATATTCATTTT
8319202 GTATA
1 GTATA
8319207 CTTGTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.13, T:0.58
Consensus pattern (13 bp):
GTATATTCATTTT
Found at i:8331326 original size:41 final size:41
Alignment explanation
Indices: 8331281--8331454 Score: 276
Period size: 41 Copynumber: 4.2 Consensus size: 41
8331271 ACTGGCACTT
*
8331281 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
*
8331322 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
*
8331363 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGACA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
** * * *
8331404 AGCCTGCTAGACTTAAAGTCTGAAACATATCACTGGCATCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
8331445 AGCCTGCTAG
1 AGCCTGCTAG
8331455 GCACCGAGCC
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
Found at i:8333109 original size:28 final size:26
Alignment explanation
Indices: 8333077--8333128 Score: 86
Period size: 28 Copynumber: 1.9 Consensus size: 26
8333067 TTTTTAATGT
8333077 TTATTATAACATAATAATATATTATACC
1 TTATTATAACAT-AT-ATATATTATACC
8333105 TTATTATAACATATATATATTATA
1 TTATTATAACATATATATATTATA
8333129 TTAATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 2 0.08
28 12 0.50
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (26 bp):
TTATTATAACATATATATATTATACC
Found at i:8336635 original size:23 final size:23
Alignment explanation
Indices: 8336608--8336654 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8336598 AAAAATGAAG
8336608 TTTTA-GTTAAAATTACTATTATA
1 TTTTAGGTTAAAATTAC-ATTATA
* *
8336631 TTTTAGGTTGAAATTTCATTATA
1 TTTTAGGTTAAAATTACATTATA
8336654 T
1 T
8336655 ATATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (23 bp):
TTTTAGGTTAAAATTACATTATA
Found at i:8337964 original size:29 final size:29
Alignment explanation
Indices: 8337931--8337992 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
8337921 TCACTTATGT
*
8337931 TTATTTTTTTATTATAATAA-CTTTATAA
1 TTATTTATTTATTATAATAACCTTTATAA
*
8337959 -TATATTATTTATTATTATAACCTTTATAA
1 TTAT-TTATTTATTATAATAACCTTTATAA
8337988 TTATT
1 TTATT
8337993 ATAAAAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 3 0.10
28 14 0.48
29 9 0.31
30 3 0.10
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (29 bp):
TTATTTATTTATTATAATAACCTTTATAA
Found at i:8337969 original size:28 final size:28
Alignment explanation
Indices: 8337938--8337994 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
8337928 TGTTTATTTT
8337938 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
8337966 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
8337994 T
1 T
8337995 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:8338205 original size:14 final size:15
Alignment explanation
Indices: 8338186--8338214 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8338176 TCACGAAACT
8338186 TTCACACAT-ATAAA
1 TTCACACATAATAAA
8338200 TTCACACATAATAAA
1 TTCACACATAATAAA
8338215 CACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:8345145 original size:28 final size:28
Alignment explanation
Indices: 8345114--8345168 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
8345104 TGTTTGTTTT
8345114 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
8345142 TTTATTATTATAACCTTTATAATTATT
1 TTTATTATAATAACCTTTATAATTATT
8345169 TCAATGGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 16 0.64
29 9 0.36
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:8345337 original size:14 final size:15
Alignment explanation
Indices: 8345318--8345346 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8345308 TCACGAAACT
8345318 TTCACACAT-ATAAA
1 TTCACACATAATAAA
8345332 TTCACACATAATAAA
1 TTCACACATAATAAA
8345347 AACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:8353629 original size:44 final size:44
Alignment explanation
Indices: 8353568--8353654 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
8353558 GTTGAAATAA
* * *
8353568 AATAGAAATTGTAATAATTATACATTTAAAAGTAATTATAATTT
1 AATAGAAATTGTAATAATTACACATTTAAAAATAATTAGAATTT
* * *
8353612 AATAGAAGTTGTGATAATTGCACATTTAAAAATAATTAGAATT
1 AATAGAAATTGTAATAATTACACATTTAAAAATAATTAGAATT
8353655 AAAATTAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.38
Consensus pattern (44 bp):
AATAGAAATTGTAATAATTACACATTTAAAAATAATTAGAATTT
Found at i:8354113 original size:20 final size:18
Alignment explanation
Indices: 8354085--8354124 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
8354075 TAAAAGCTAG
8354085 TTCTCTTTCATTCTTTTTTT
1 TTCTCTTTC-TT-TTTTTTT
*
8354105 TTCTTTTTCTTTTTTTTT
1 TTCTCTTTCTTTTTTTTT
8354123 TT
1 TT
8354125 ATAAATGAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 2 0.11
20 8 0.42
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTCTCTTTCTTTTTTTTT
Found at i:8364249 original size:618 final size:617
Alignment explanation
Indices: 8363058--8364468 Score: 2355
Period size: 618 Copynumber: 2.3 Consensus size: 617
8363048 CACGCTCATG
*
8363058 TTCTTCACTGGTTGTTGAACTTATCATCGATAACCTTTAAAATCTCATTAAAGATCGGTAAGTAT
1 TTCTTCACTGGTTGTTGAATTTATCATCGATAACCTTTAAAATCTCATTAAAGATCGGTAAGTAT
8363123 TCTCATTTCCAATTAGAACCCATAAATTCTGTAATA-TTCGTTCTTGTTAATCTTTCAACTCGAA
66 TCTCATTTCCAATTAGAACCCATAAATTCTGTAATAGTT-GTTCTTGTTAATCTTTCAACTCGAA
* *
8363187 TACGAATCTTTTACGAAATTTCCCAAAGATCTTGAAAATTTTGATAGTTCTATTCACTTTTTTCC
130 TACGAATCTTTTACGAAA-TTCCCAAAAATCTTGATAATTTTGATAGTTCTATTCACTTTTTTCC
* *
8363252 CATTCTTTTCTTTAAATTTTTAGCAAACTAGAGTGAAAGTCACCTAAAAATAAGTTTAAAATAGA
194 CATTCTTTACTTTAAATTTTTAGCAAACTAGAATGAAAGTCACCTAAAAATAAGTTTAAAATAGA
*
8363317 GTAGAAAATTAATAAAAGTGAGCAATAGTTCAAATGATTAAAGCCTTTACTTTTTTCTCCCTTGA
259 GTAGAAAATTAATAAAAGTGAGCAATAGCTCAAATGATTAAAGCCTTTACTTTTTTCTCCCTTGA
* *
8363382 AAACCAGGTTCAAGTTACGCCAAACTCCCCATTTCCATTTTAATTTCGACCAAAATTGGATATCT
324 AAACCAGGTTCAAGTCACGCCAAACTCCCCATCTCCATTTTAATTTCGACCAAAATTGGATATCT
* *
8363447 TGCCTTGCAATCCCTTGAAATTTGAAAACCCTAAGTATTTAATCCTCCTTTTCCTAATTACTCTA
389 TGCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTAATCCTCCTTTTCCTAATTACTCTA
* * *
8363512 GGATTTTTATTTCTTTTCTATTTCAACTTGAATGTTCCCTCTTTTCCCTTTAAATTCTTCTTTTC
454 GGATTTTGATTTCTTTTCTATTTCAACTTGAATGTTCACTCTTTTCCCTTTAAATTCTTATTTTC
** *
8363577 TTTTCTCCTCTTTTTCTTTTTCATCATATTTCACATTATTTTGCTATAAAAATTATTTCTTTGCT
519 TTTTCAACTCCTTTTCTTTTTCATCATATTTCACATTATTTTGCTATAAAAATTATTTCTTTGCT
*
8363642 CACTCCGAATCAAAATCAATC-TCTATTAAATTCA
584 CACTCCAAATCAAAATCAATCTTC-ATTAAATTCA
* * *
8363676 TTCTACACTGGTTGTTGAGTTTATCATCGATAACCTTCAAAATCTCATTAAAGATCGGTAAGTAT
1 TTCTTCACTGGTTGTTGAATTTATCATCGATAACCTTTAAAATCTCATTAAAGATCGGTAAGTAT
*
8363741 TCTCATTTCCAATTAGAACCCATAAATTTTGTAATAGTTGTTCTTGTTAATCTTTCAACTCGAAT
66 TCTCATTTCCAATTAGAACCCATAAATTCTGTAATAGTTGTTCTTGTTAATCTTTCAACTCGAAT
8363806 ACGAATCTTTTACGAAATTCCCAAAAAATCTTGATAATTTTGATAGTTCTATTCACTTTTTTCCC
131 ACGAATCTTTTACGAAATTCCC-AAAAATCTTGATAATTTTGATAGTTCTATTCACTTTTTTCCC
* *
8363871 ATTTCTTTACTTTAAATTTTTAGCAAACTAGAATGAGAGTCACCTAAAAATAAGTTTTAAATAGA
195 A-TTCTTTACTTTAAATTTTTAGCAAACTAGAATGAAAGTCACCTAAAAATAAGTTTAAAATAGA
* *
8363936 GTAGGAAATTAATAAAAGTGAGCAATAGCTCAAATGATTAAAGCCTTTAC-TTTTTCTCCCTTGC
259 GTAGAAAATTAATAAAAGTGAGCAATAGCTCAAATGATTAAAGCCTTTACTTTTTTCTCCCTTGA
* *
8364000 AAACTAGGTTCAAGTCACGCCAAACTCCCCATCTCCATTTTAATTTCGACCAAAATTGGATATTT
324 AAACCAGGTTCAAGTCACGCCAAACTCCCCATCTCCATTTTAATTTCGACCAAAATTGGATATCT
* *
8364065 TTCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTAATCCTCTTTTTCCTAATTACTCTA
389 TGCCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTAATCCTCCTTTTCCTAATTACTCTA
8364130 GGATTTTGATTTCTTTTCTATTTCAACTTGAATGCTT-ACTCTTTTCCCTTTAAATTCTTATTTT
454 GGATTTTGATTTCTTTTCTATTTCAACTTGAATG-TTCACTCTTTTCCCTTTAAATTCTTATTTT
** * *
8364194 CTTTTCAACTCCTTTTCTTTTTCATCATATTTCACATTATTTTTTTGTGAAAATTATTTCTTTGC
518 CTTTTCAACTCCTTTTCTTTTTCATCATATTTCACATTATTTTGCTATAAAAATTATTTCTTTGC
*
8364259 TCACTCCAAATCAAAATCAATCTTCATTAAATTCG
583 TCACTCCAAATCAAAATCAATCTTCATTAAATTCA
* * *
8364294 TTCTTCACTGGTTGTTGAATTTATCATCGATAACCTTTAAAATCTCATTATAGATCAGTAAGCAT
1 TTCTTCACTGGTTGTTGAATTTATCATCGATAACCTTTAAAATCTCATTAAAGATCGGTAAGTAT
* *
8364359 TCTTC-TTTCCAATTAGAACCCATAAATTCTGTAATAGTTTTTCTTGTTAATCTTTCAACTCAAA
66 TC-TCATTTCCAATTAGAACCCATAAATTCTGTAATAGTTGTTCTTGTTAATCTTTCAACTCGAA
*
8364423 TACGAATCTTTTACGAATTTTCCCAAAAATCTTGATAATTTTGATA
130 TACGAATCTTTTACGAA-ATTCCCAAAAATCTTGATAATTTTGATA
8364469 AATCTTGGAA
Statistics
Matches: 742, Mismatches: 44, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
617 5 0.01
618 617 0.83
619 120 0.16
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.41
Consensus pattern (617 bp):
TTCTTCACTGGTTGTTGAATTTATCATCGATAACCTTTAAAATCTCATTAAAGATCGGTAAGTAT
TCTCATTTCCAATTAGAACCCATAAATTCTGTAATAGTTGTTCTTGTTAATCTTTCAACTCGAAT
ACGAATCTTTTACGAAATTCCCAAAAATCTTGATAATTTTGATAGTTCTATTCACTTTTTTCCCA
TTCTTTACTTTAAATTTTTAGCAAACTAGAATGAAAGTCACCTAAAAATAAGTTTAAAATAGAGT
AGAAAATTAATAAAAGTGAGCAATAGCTCAAATGATTAAAGCCTTTACTTTTTTCTCCCTTGAAA
ACCAGGTTCAAGTCACGCCAAACTCCCCATCTCCATTTTAATTTCGACCAAAATTGGATATCTTG
CCATGCAACCCCTTGAAATTTGAAAACCCTAAGTATTTAATCCTCCTTTTCCTAATTACTCTAGG
ATTTTGATTTCTTTTCTATTTCAACTTGAATGTTCACTCTTTTCCCTTTAAATTCTTATTTTCTT
TTCAACTCCTTTTCTTTTTCATCATATTTCACATTATTTTGCTATAAAAATTATTTCTTTGCTCA
CTCCAAATCAAAATCAATCTTCATTAAATTCA
Found at i:8365918 original size:26 final size:25
Alignment explanation
Indices: 8365884--8366094 Score: 109
Period size: 24 Copynumber: 8.6 Consensus size: 25
8365874 TAGCCCTCTC
8365884 GAGCTTCCCGTTATATGGCTCTTCGT
1 GAGCTTCCCGTTATATGGCTCTTC-T
* *
8365910 GAGCTTCCCGATTA-AAGGCTCTTTGT
1 GAGCTTCCCG-TTATATGGCTC-TTCT
* *
8365936 GAGCTTCCTGATTA-ATGGCTC-TCC
1 GAGCTTCCCG-TTATATGGCTCTTCT
* * * *
8365960 GAGATTCCCG--ATCTAGCTC-GCTT
1 GAGCTTCCCGTTATATGGCTCTTC-T
* * * * *
8365983 GAACTTCCCGATATATGGCTATCCA
1 GAGCTTCCCGTTATATGGCTCTTCT
* *
8366008 GAGCTTCCTGTTA-ATGGCTCTTCA
1 GAGCTTCCCGTTATATGGCTCTTCT
* **
8366032 GAGCTACCCGTTAT-TGGCT-AGCAT
1 GAGCTTCCCGTTATATGGCTCTTC-T
* *
8366056 GAGCTTCCCGAT-TATGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCTTCT
*
8366080 GAGCTTTCCGTTATA
1 GAGCTTCCCGTTATA
8366095 CAGTCCGGAT
Statistics
Matches: 137, Mismatches: 36, Indels: 25
0.69 0.18 0.13
Matches are distributed among these distances:
21 1 0.01
22 6 0.04
23 10 0.07
24 60 0.44
25 18 0.13
26 37 0.27
27 5 0.04
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCTTCT
Found at i:8366084 original size:72 final size:71
Alignment explanation
Indices: 8365909--8366085 Score: 171
Period size: 72 Copynumber: 2.4 Consensus size: 71
8365899 TGGCTCTTCG
* * * *
8365909 TGAGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCTGATTAATGGCTCTCCGAGATTCCCGATCT
1 TGAGCTTCCCGATT-ATGGCTC-TTATGAGCTTCCTGATTAATGGCTCTCAGAGATACCCGATCT
* *
8365974 AGCTCGCT
64 AGCTAGCA
* * * *
8365982 TGAACTTCCCGATATATGGCTATCCA-GAGCTTCCTG-TTAATGGCTCTTCAGAGCTACCCGTTA
1 TGAGCTTCCCGAT-TATGGCTCT-TATGAGCTTCCTGATTAATGGCTC-TCAGAGATACCCG--A
*
8366045 T-TGGCTAGCA
61 TCTAGCTAGCA
8366055 TGAGCTTCCCGATTATGGCTCTTATGAGCTT
1 TGAGCTTCCCGATTATGGCTCTTATGAGCTT
8366086 TCCGTTATAC
Statistics
Matches: 84, Mismatches: 14, Indels: 13
0.76 0.13 0.12
Matches are distributed among these distances:
71 11 0.13
72 35 0.42
73 35 0.42
74 3 0.04
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.33
Consensus pattern (71 bp):
TGAGCTTCCCGATTATGGCTCTTATGAGCTTCCTGATTAATGGCTCTCAGAGATACCCGATCTAG
CTAGCA
Found at i:8367717 original size:29 final size:28
Alignment explanation
Indices: 8367685--8367811 Score: 139
Period size: 28 Copynumber: 4.5 Consensus size: 28
8367675 TATGTTTTAA
8367685 ATATTATAATTTTATCCCCTATTTTTCAT
1 ATATTATAATTTTA-CCCCTATTTTTCAT
*
8367714 ATATTATAATTTTACCCTTATTTTTCA-
1 ATATTATAATTTTACCCCTATTTTTCAT
* * * * *
8367741 AAATTTATAATTTTGCCCATATTTTTTTAG
1 ATA-TTATAATTTTACCCCTA-TTTTTCAT
*
8367771 ATTTTATAATTTTACCCCTATTTTTCAT
1 ATATTATAATTTTACCCCTATTTTTCAT
* *
8367799 ATTTTATAGTTTT
1 ATATTATAATTTT
8367812 GTTCCTTATT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.02
28 45 0.54
29 35 0.42
30 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.02, T:0.57
Consensus pattern (28 bp):
ATATTATAATTTTACCCCTATTTTTCAT
Found at i:8367749 original size:57 final size:57
Alignment explanation
Indices: 8367671--8367812 Score: 155
Period size: 57 Copynumber: 2.5 Consensus size: 57
8367661 GGCCATGTGT
* * *
8367671 CCCTTATGTTTT--AAATATTATAATTTTATCCCCTA-TTTTTCATATATTATAATTTTA
1 CCCTTAT-TTTTCAAAAT-TTATAATTTT-GCCCATATTTTTTCAGATATTATAATTTTA
* *
8367728 CCCTTATTTTTCAAAATTTATAATTTTGCCCATATTTTTTTAGATTTTATAATTTTA
1 CCCTTATTTTTCAAAATTTATAATTTTGCCCATATTTTTTCAGATATTATAATTTTA
* * * *
8367785 CCCCTATTTTTCATATTTTATAGTTTTG
1 CCCTTATTTTTCAAAATTTATAATTTTG
8367813 TTCCTTATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
56 9 0.12
57 60 0.82
58 4 0.05
ACGTcount: A:0.27, C:0.14, G:0.04, T:0.56
Consensus pattern (57 bp):
CCCTTATTTTTCAAAATTTATAATTTTGCCCATATTTTTTCAGATATTATAATTTTA
Found at i:8367821 original size:29 final size:29
Alignment explanation
Indices: 8367671--8367843 Score: 131
Period size: 29 Copynumber: 6.0 Consensus size: 29
8367661 GGCCATGTGT
*
8367671 CCCTTATGTTTT-AAATATTATAATTTT-A
1 CCCTTAT-TTTTCAAATTTTATAATTTTGA
* * *
8367699 TCCCCTATTTTTCATATATTATAATTTT-A
1 -CCCTTATTTTTCAAATTTTATAATTTTGA
*
8367728 CCCTTATTTTTCAAAATTTATAATTTTG-
1 CCCTTATTTTTCAAATTTTATAATTTTGA
* * *
8367756 CCCATATTTTTTTAGATTTTATAATTTT-A
1 CCCTTA-TTTTTCAAATTTTATAATTTTGA
* * * *
8367785 CCCCTATTTTTCATATTTTATAGTTTTGT
1 CCCTTATTTTTCAAATTTTATAATTTTGA
* * *
8367814 TCCTTATTTTTAAAAAATTTTATAGTTTTG
1 CCCTTATTTTT--CAAATTTTATAATTTTG
8367844 TCTCCTACTT
Statistics
Matches: 118, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
28 50 0.42
29 53 0.45
31 15 0.13
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (29 bp):
CCCTTATTTTTCAAATTTTATAATTTTGA
Found at i:8369729 original size:48 final size:48
Alignment explanation
Indices: 8369677--8369824 Score: 120
Period size: 48 Copynumber: 3.2 Consensus size: 48
8369667 CATACATGGT
8369677 ATTATAGAAAAAGTTAAAGGACAAAATGGTAAATATTTGAATTAGATA
1 ATTATAGAAAAAGTTAAAGGACAAAATGGTAAATATTTGAATTAGATA
* * * * * *
8369725 ATTAT-G-AAAA-TT-TA--CCAAAA--G-AAAGA-ATGAATCATACATGGT
1 ATTATAGAAAAAGTTAAAGGACAAAATGGTAAATATTTGAAT--TAGAT--A
*
8369767 ATTATAGAAAAAGTTAAAGGACAAAATGGTAAATATTTGAGTTAGATA
1 ATTATAGAAAAAGTTAAAGGACAAAATGGTAAATATTTGAATTAGATA
8369815 ATTATA-AAAA
1 ATTATAGAAAA
8369825 GTGTAATGAT
Statistics
Matches: 73, Mismatches: 13, Indels: 29
0.63 0.11 0.25
Matches are distributed among these distances:
38 5 0.07
39 4 0.05
40 5 0.07
42 10 0.14
43 1 0.01
44 5 0.07
45 4 0.05
46 5 0.07
47 5 0.07
48 16 0.22
50 5 0.07
51 4 0.05
52 4 0.05
ACGTcount: A:0.52, C:0.04, G:0.16, T:0.28
Consensus pattern (48 bp):
ATTATAGAAAAAGTTAAAGGACAAAATGGTAAATATTTGAATTAGATA
Found at i:8369751 original size:90 final size:90
Alignment explanation
Indices: 8369639--8369824 Score: 354
Period size: 90 Copynumber: 2.1 Consensus size: 90
8369629 GGACTAGAGG
8369639 TGAAAATTTACCAAAAGAAAGAATGAATCATACATGGTATTATAGAAAAAGTTAAAGGACAAAAT
1 TGAAAATTTACCAAAAGAAAGAATGAATCATACATGGTATTATAGAAAAAGTTAAAGGACAAAAT
8369704 GGTAAATATTTGAATTAGATAATTA
66 GGTAAATATTTGAATTAGATAATTA
8369729 TGAAAATTTACCAAAAGAAAGAATGAATCATACATGGTATTATAGAAAAAGTTAAAGGACAAAAT
1 TGAAAATTTACCAAAAGAAAGAATGAATCATACATGGTATTATAGAAAAAGTTAAAGGACAAAAT
*
8369794 GGTAAATATTTGAGTTAGATAATTA
66 GGTAAATATTTGAATTAGATAATTA
*
8369819 TAAAAA
1 TGAAAA
8369825 GTGTAATGAT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 94 1.00
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.27
Consensus pattern (90 bp):
TGAAAATTTACCAAAAGAAAGAATGAATCATACATGGTATTATAGAAAAAGTTAAAGGACAAAAT
GGTAAATATTTGAATTAGATAATTA
Found at i:8371155 original size:23 final size:24
Alignment explanation
Indices: 8371124--8371172 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
8371114 TTTAGCGCAC
8371124 TCTCTATTACGCACTTCAATGTTG
1 TCTCTATTACGCACTTCAATGTTG
* *
8371148 TCTC-ATTACGCACTTTAATTTTG
1 TCTCTATTACGCACTTCAATGTTG
8371171 TC
1 TC
8371173 CTGTACTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.45
Consensus pattern (24 bp):
TCTCTATTACGCACTTCAATGTTG
Found at i:8376419 original size:18 final size:19
Alignment explanation
Indices: 8376384--8376419 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8376374 AGAGAAAACA
8376384 TTTTAAATAAAATAATTTG
1 TTTTAAATAAAATAATTTG
*
8376403 TTTTAAA-AAAATTATTT
1 TTTTAAATAAAATAATTT
8376420 AGTAATTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TTTTAAATAAAATAATTTG
Found at i:8377037 original size:29 final size:29
Alignment explanation
Indices: 8376991--8377052 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
8376981 CTTTCAGTGC
* *
8376991 ATTTTTTACGGGTGGTTGAGGTTGATCAG
1 ATTTTTTACGGGTAGTTGAGGTTGATCAA
8377020 ATTTTTTACGGGTAGTTGAGGTTGATCAA
1 ATTTTTTACGGGTAGTTGAGGTTGATCAA
8377049 ATTT
1 ATTT
8377053 CTGGAAATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.21, C:0.06, G:0.29, T:0.44
Consensus pattern (29 bp):
ATTTTTTACGGGTAGTTGAGGTTGATCAA
Found at i:8378270 original size:26 final size:26
Alignment explanation
Indices: 8378241--8378296 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
8378231 ATAAAATCCT
8378241 ATAGGTACATGCCGACCAAAGTAGCA
1 ATAGGTACATGCCGACCAAAGTAGCA
8378267 ATAGGTACATGCCGACCAAAGTAGCA
1 ATAGGTACATGCCGACCAAAGTAGCA
8378293 ATAG
1 ATAG
8378297 TTTCACCAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (26 bp):
ATAGGTACATGCCGACCAAAGTAGCA
Found at i:8378481 original size:30 final size:30
Alignment explanation
Indices: 8378447--8378509 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
8378437 ACATAACAAA
*
8378447 AATTATGTAAGGACATAAACAAAATAAGAT
1 AATTATGTAAGAACATAAACAAAATAAGAT
8378477 AATTATGTAAGAACATAAACAAAATAAGAT
1 AATTATGTAAGAACATAAACAAAATAAGAT
8378507 AAT
1 AAT
8378510 CAAAGGTCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.59, C:0.06, G:0.11, T:0.24
Consensus pattern (30 bp):
AATTATGTAAGAACATAAACAAAATAAGAT
Found at i:8381299 original size:11 final size:11
Alignment explanation
Indices: 8381285--8381316 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8381275 GAGAAATTCA
8381285 AGAGAGATTTG
1 AGAGAGATTTG
*
8381296 AGAGAAATTTG
1 AGAGAGATTTG
8381307 AGAGAGATTT
1 AGAGAGATTT
8381317 AAAAATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.28
Consensus pattern (11 bp):
AGAGAGATTTG
Found at i:8381301 original size:22 final size:22
Alignment explanation
Indices: 8381275--8381316 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8381265 AAATTTAAGT
8381275 GAGAAATTCAAGAGAGATTTGA
1 GAGAAATTCAAGAGAGATTTGA
**
8381297 GAGAAATTTGAGAGAGATTT
1 GAGAAATTCAAGAGAGATTT
8381317 AAAAATATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.02, G:0.29, T:0.26
Consensus pattern (22 bp):
GAGAAATTCAAGAGAGATTTGA
Found at i:8381327 original size:19 final size:22
Alignment explanation
Indices: 8381285--8381332 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 22
8381275 GAGAAATTCA
*
8381285 AGAGAGATTTGAGAGAAATTTG
1 AGAGAGATTTGAGAGAAATATG
8381307 AGAGAGATTT-A-A-AAATATG
1 AGAGAGATTTGAGAGAAATATG
8381326 AGAGAGA
1 AGAGAGA
8381333 GAGAGAGAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 13 0.52
20 1 0.04
21 1 0.04
22 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.23
Consensus pattern (22 bp):
AGAGAGATTTGAGAGAAATATG
Found at i:8383807 original size:17 final size:17
Alignment explanation
Indices: 8383785--8383820 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
8383775 ATATAGTTTG
8383785 ATGTGACATAAC-CTATA
1 ATGTGACAT-ACTCTATA
8383802 ATGTGACATACTCTATA
1 ATGTGACATACTCTATA
8383819 AT
1 AT
8383821 TTAAATATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (17 bp):
ATGTGACATACTCTATA
Found at i:8400065 original size:20 final size:20
Alignment explanation
Indices: 8400042--8400089 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
8400032 ATTTTCTGAG
*
8400042 TTTTGCTCATTTTTCGCT-T
1 TTTTGCTCATTTTTCACTCT
*
8400061 CTTTTGCTCGTTTTTCACTCT
1 -TTTTGCTCATTTTTCACTCT
8400082 TTTTGCTC
1 TTTTGCTC
8400090 CAAATTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.04, C:0.25, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTTGCTCATTTTTCACTCT
Found at i:8400974 original size:20 final size:18
Alignment explanation
Indices: 8400927--8400975 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
8400917 GTATATAAAC
8400927 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
8400944 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
8400964 ATTAAATTAATA
1 ATTAAATTAATA
8400976 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:8411849 original size:12 final size:12
Alignment explanation
Indices: 8411830--8412005 Score: 55
Period size: 12 Copynumber: 14.8 Consensus size: 12
8411820 AATACTAAGT
8411830 AAAT-ATAATAA
1 AAATAATAATAA
8411841 AAATAATAAT-A
1 AAATAATAATAA
8411852 AAAT-AT-ATAA
1 AAATAATAATAA
* *
8411862 ATAATAAT-GTATT
1 A-AATAATAATA-A
**
8411875 AAATAGGAATAA
1 AAATAATAATAA
* *
8411887 GAATAAGAATAA
1 AAATAATAATAA
* *
8411899 GAATTATAA-AA
1 AAATAATAATAA
*
8411910 CAAAGAA-AGATAA
1 -AAATAATA-ATAA
* *
8411923 TATAATAAGAATAT
1 -A-AATAATAATAA
*
8411937 AAATAAAAATAA
1 AAATAATAATAA
*
8411949 ATAATAA-ACTAA
1 A-AATAATAATAA
*
8411961 ATATAATAATAA
1 AAATAATAATAA
* *
8411973 AAATTATGAT-A
1 AAATAATAATAA
* *
8411984 AAATAAAAAAAA
1 AAATAATAATAA
8411996 TAAATAATAA
1 -AAATAATAA
8412006 GGTAAATGAA
Statistics
Matches: 121, Mismatches: 29, Indels: 28
0.68 0.16 0.16
Matches are distributed among these distances:
9 2 0.02
10 4 0.03
11 26 0.21
12 61 0.50
13 20 0.17
14 7 0.06
15 1 0.01
ACGTcount: A:0.68, C:0.01, G:0.06, T:0.26
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:8411997 original size:29 final size:30
Alignment explanation
Indices: 8411938--8411998 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
8411928 TAAGAATATA
* * *
8411938 AATAAAAATAAATAATAAACTAAATATAAT
1 AATAAAAATAAATAATAAAATAAAAAAAAT
* *
8411968 AATAAAAAT-TATGATAAAATAAAAAAAAT
1 AATAAAAATAAATAATAAAATAAAAAAAAT
8411997 AA
1 AA
8411999 ATAATAAGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (30 bp):
AATAAAAATAAATAATAAAATAAAAAAAAT
Found at i:8412686 original size:13 final size:13
Alignment explanation
Indices: 8412668--8412692 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8412658 AAATAAAAAT
8412668 TAGGCCGTGTGTC
1 TAGGCCGTGTGTC
8412681 TAGGCCGTGTGT
1 TAGGCCGTGTGT
8412693 GAACATCCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.20, G:0.40, T:0.32
Consensus pattern (13 bp):
TAGGCCGTGTGTC
Found at i:8415928 original size:19 final size:19
Alignment explanation
Indices: 8415906--8415942 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8415896 TAAATGTGAA
*
8415906 TATAAAATTAAAACAAAAT
1 TATAAAAATAAAACAAAAT
*
8415925 TATAAAAATAAAATAAAA
1 TATAAAAATAAAACAAAA
8415943 ACGGTTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (19 bp):
TATAAAAATAAAACAAAAT
Found at i:8422508 original size:22 final size:22
Alignment explanation
Indices: 8422418--8422490 Score: 146
Period size: 22 Copynumber: 3.3 Consensus size: 22
8422408 CTAAGAGCCG
8422418 TAAACAGGATAGCTATAAGCTA
1 TAAACAGGATAGCTATAAGCTA
8422440 TAAACAGGATAGCTATAAGCTA
1 TAAACAGGATAGCTATAAGCTA
8422462 TAAACAGGATAGCTATAAGCTA
1 TAAACAGGATAGCTATAAGCTA
8422484 TAAACAG
1 TAAACAG
8422491 AATGACTACA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.22
Consensus pattern (22 bp):
TAAACAGGATAGCTATAAGCTA
Found at i:8422591 original size:18 final size:18
Alignment explanation
Indices: 8422568--8422619 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
8422558 ACACACAACC
8422568 ATCAGTAACGATAATATG
1 ATCAGTAACGATAATATG
8422586 ATCAGT-AC-A-AAGTA--
1 ATCAGTAACGATAA-TATG
*
8422600 ATTAGTAACGATAATATG
1 ATCAGTAACGATAATATG
8422618 AT
1 AT
8422620 TGGCACAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 12
0.68 0.03 0.30
Matches are distributed among these distances:
14 5 0.19
15 4 0.15
16 6 0.22
17 4 0.15
18 8 0.30
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (18 bp):
ATCAGTAACGATAATATG
Found at i:8422840 original size:24 final size:24
Alignment explanation
Indices: 8422813--8422859 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8422803 GCTCAGAATC
8422813 AGTCATACAAATCACAGACAAATT
1 AGTCATACAAATCACAGACAAATT
* *
8422837 AGTCATACTAATCATAGACAAAT
1 AGTCATACAAATCACAGACAAAT
8422860 CAGTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (24 bp):
AGTCATACAAATCACAGACAAATT
Found at i:8422874 original size:24 final size:24
Alignment explanation
Indices: 8422847--8422895 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
8422837 AGTCATACTA
* *
8422847 ATCATAGACAAATCAGTTATTTAC
1 ATCATAGACAAATCAATCATTTAC
*
8422871 ATCATGGACAAATCAATCATTTAC
1 ATCATAGACAAATCAATCATTTAC
8422895 A
1 A
8422896 CTCGAGGGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (24 bp):
ATCATAGACAAATCAATCATTTAC
Found at i:8422966 original size:27 final size:27
Alignment explanation
Indices: 8422936--8423294 Score: 218
Period size: 27 Copynumber: 13.3 Consensus size: 27
8422926 AGGAGCATTA
*
8422936 CGATCATTTTACCTTACAGGGGTATTT
1 CGATCATTTTACCCTACAGGGGTATTT
** *
8422963 CGATCATTTTACCCTATGGGGGTATTA
1 CGATCATTTTACCCTACAGGGGTATTT
* * * *
8422990 CGATTATTTTACCCTACAAGGGCATTA
1 CGATCATTTTACCCTACAGGGGTATTT
* * * *
8423017 CGACCATTTTACCCTATA-AGGTTTTT
1 CGATCATTTTACCCTACAGGGGTATTT
*
8423043 C-AGTCATTTTACCCTACGGGGGTATTAT
1 CGA-TCATTTTACCCTACAGGGGTATT-T
* * * *
8423071 AG-TCATTTTACCTTACAGGGGCATTA
1 CGATCATTTTACCCTACAGGGGTATTT
* *
8423097 CGGTCATTTGACCCTAC-GAGGGTATTT
1 CGATCATTTTACCCTACAG-GGGTATTT
* *
8423124 CGGTCATTTTA-CCTATC-GAGGATATTT
1 CGATCATTTTACCCTA-CAG-GGGTATTT
* **
8423151 TGATCATTTTACCCT-TTGAGGGTATTT
1 CGATCATTTTACCCTACAG-GGGTATTT
* * *
8423178 TGGTCATTTTACCC-ATCAAGGGTATTT
1 CGATCATTTTACCCTA-CAGGGGTATTT
* *
8423205 CGGTAATTTTACCC-ATC-GAGGGTATTT
1 CGATCATTTTACCCTA-CAG-GGGTATTT
* ** *
8423232 CGATAATTTTACCCTTTAAGGGTATTT
1 CGATCATTTTACCCTACAGGGGTATTT
* * *
8423259 CGGTAATTTTACCCTTC-GAGGGTATTT
1 CGATCATTTTACCCTACAG-GGGTATTT
*
8423286 CGATAATTT
1 CGATCATTT
8423295 GCCCACGAAT
Statistics
Matches: 265, Mismatches: 52, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
25 1 0.00
26 23 0.09
27 237 0.89
28 4 0.02
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (27 bp):
CGATCATTTTACCCTACAGGGGTATTT
Found at i:8422993 original size:54 final size:53
Alignment explanation
Indices: 8422936--8423294 Score: 262
Period size: 54 Copynumber: 6.7 Consensus size: 53
8422926 AGGAGCATTA
* ** *
8422936 CGATCATTTTACCTTACAGGGGTATTTCGATCATTTTACCCTATGGGGGTATTA
1 CGATCATTTTACCCTAC-GGGGTATTTCGATCATTTTACCCTATAAGGGTATTT
* * * * * *
8422990 CGATTATTTTACCCTACAAGGGCATTACGACCATTTTACCCTATAA-GGTTTTT
1 CGATCATTTTACCCTAC-GGGGTATTTCGATCATTTTACCCTATAAGGGTATTT
* * * * * *
8423043 C-AGTCATTTTACCCTACGGGGGTATTATAG-TCATTTTACCTTACAGGGGCATTA
1 CGA-TCATTTTACCCTAC-GGGGTATT-TCGATCATTTTACCCTATAAGGGTATTT
* * * * *
8423097 CGGTCATTTGACCCTACGAGGGTATTTCGGTCATTTTA-CCTATCGAGGATATTT
1 CGATCATTTTACCCTACG-GGGTATTTCGATCATTTTACCCTAT-AAGGGTATTT
* ** * *
8423151 TGATCATTTTACCCTTTGAGGGTATTTTGGTCATTTTACCC-ATCAAGGGTATTT
1 CGATCATTTTACCCTACG-GGGTATTTCGATCATTTTACCCTAT-AAGGGTATTT
* * * *
8423205 CGGTAATTTTACCC-ATCGAGGGTATTTCGATAATTTTACCCTTTAAGGGTATTT
1 CGATCATTTTACCCTA-CG-GGGTATTTCGATCATTTTACCCTATAAGGGTATTT
* * * *
8423259 CGGTAATTTTACCCTTCGAGGGTATTTCGATAATTT
1 CGATCATTTTACCCTACG-GGGTATTTCGATCATTT
8423295 GCCCACGAAT
Statistics
Matches: 243, Mismatches: 51, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
52 1 0.00
53 43 0.18
54 196 0.81
55 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (53 bp):
CGATCATTTTACCCTACGGGGTATTTCGATCATTTTACCCTATAAGGGTATTT
Found at i:8423003 original size:81 final size:82
Alignment explanation
Indices: 8422916--8423294 Score: 273
Period size: 81 Copynumber: 4.7 Consensus size: 82
8422906 AAAATAGTCA
*
8422916 TTTACCCT-CTAGGAGCATTACGATCATTTTACCTTACAGGGGTATTTCGATCATTTTACCCTAT
1 TTTACCCTACTAGG-GCATTACGATCATTTTACCCTACAGGGGTATTTCGATCATTTTACCCTAT
* *
8422980 -GGGGGTATTACGATTAT
65 CGAGGGTATTACGATCAT
* * * * *
8422997 TTTACCCTACAAGGGCATTACGACCATTTTACCCTATA-AGGTTTTTC-AGTCATTTTACCCTA-
1 TTTACCCTACTAGGGCATTACGATCATTTTACCCTACAGGGGTATTTCGA-TCATTTTACCCTAT
* *
8423059 CGGGGGTATTA-TAGTCAT
65 CGAGGGTATTACGA-TCAT
* * * *
8423077 TTTACCTTAC-AGGGGCATTACGGTCATTTGACCCTAC-GAGGGTATTTCGGTCATTTTA-CCTA
1 TTTACCCTACTA-GGGCATTACGATCATTTTACCCTACAG-GGGTATTTCGATCATTTTACCCTA
* **
8423139 TCGAGGATATTTTGATCAT
64 TCGAGGGTATTACGATCAT
* * ** * * * *
8423158 TTTACCCT-TTGAGGGTATTTTGGTCATTTTACCC-ATCAAGGGTATTTCGGTAATTTTACCC-A
1 TTTACCCTACT-AGGGCATTACGATCATTTTACCCTA-CAGGGGTATTTCGATCATTTTACCCTA
* *
8423220 TCGAGGGTATTTCGATAAT
64 TCGAGGGTATTACGATCAT
* * * * * * *
8423239 TTTACCCT-TTAAGGGTATTTCGGTAATTTTACCCTTC-GAGGGTATTTCGATAATTT
1 TTTACCCTACT-AGGGCATTACGATCATTTTACCCTACAG-GGGTATTTCGATCATTT
8423295 GCCCACGAAT
Statistics
Matches: 244, Mismatches: 37, Indels: 34
0.77 0.12 0.11
Matches are distributed among these distances:
79 3 0.01
80 68 0.28
81 165 0.68
82 8 0.03
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (82 bp):
TTTACCCTACTAGGGCATTACGATCATTTTACCCTACAGGGGTATTTCGATCATTTTACCCTATC
GAGGGTATTACGATCAT
Found at i:8423159 original size:134 final size:135
Alignment explanation
Indices: 8422939--8423191 Score: 305
Period size: 134 Copynumber: 1.9 Consensus size: 135
8422929 AGCATTACGA
* * * * * *
8422939 TCATTTTACCTTACAGGGGTATTTCGATCATTTTACCCTATGGGGGTATTACGATTATTTTACCC
1 TCATTTTACCTTACAGGGGCATTACGATCATTTGACCCTACGAGGGTATTACGATCATTTTACCC
*
8423004 TACAAGGGCATTACGACCATTTTACCCTAT-AAGGT-TTTTCAGTCATTTTACCCTACGGGGGTA
66 TACAAGGACATTACGACCATTTTACCCTATGAAGGTATTTT-AGTCATTTTACCCTACGGGGGTA
8423067 TTATAG
130 TTATAG
* * *
8423073 TCATTTTACCTTACAGGGGCATTACGGTCATTTGACCCTACGAGGGTATTTCGGTCATTTTA-CC
1 TCATTTTACCTTACAGGGGCATTACGATCATTTGACCCTACGAGGGTATTACGATCATTTTACCC
* * ** * * * *
8423137 TATCGAGGATATTTTGATCATTTTACCCTTTGAGGGTATTTTGGTCATTTTACCC
66 TA-CAAGGACATTACGACCATTTTACCCTATGAAGGTATTTTAGTCATTTTACCC
8423192 ATCAAGGGTA
Statistics
Matches: 98, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
133 4 0.04
134 74 0.76
135 16 0.16
136 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (135 bp):
TCATTTTACCTTACAGGGGCATTACGATCATTTGACCCTACGAGGGTATTACGATCATTTTACCC
TACAAGGACATTACGACCATTTTACCCTATGAAGGTATTTTAGTCATTTTACCCTACGGGGGTAT
TATAG
Found at i:8423315 original size:54 final size:54
Alignment explanation
Indices: 8423203--8423315 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
8423193 TCAAGGGTAT
*** **** *
8423203 TTCGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCTTTAAGGGTAT
1 TTCGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCACGAACAAAAG
* *
8423257 TTCGGTAATTTTACCCTTCGAGGGTATTTCGATAA-TTTGCCCACGAATCAAAAG
1 TTCGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCACGAA-CAAAAG
8423311 TTCGG
1 TTCGG
8423316 CTTACCACTC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 8 0.17
54 40 0.83
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
TTCGGTAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCACGAACAAAAG
Found at i:8424399 original size:24 final size:23
Alignment explanation
Indices: 8424357--8424403 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
8424347 TTTTGAATTT
8424357 CCTTGATTTTCTCTCCAATCTCCA
1 CCTTGATTTTCTCTCCAAT-TCCA
*
8424381 CCTTTATTTTCTC-CACAATTCCA
1 CCTTGATTTTCTCTC-CAATTCCA
8424404 TCCAAGACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.19, C:0.36, G:0.02, T:0.43
Consensus pattern (23 bp):
CCTTGATTTTCTCTCCAATTCCA
Found at i:8426332 original size:18 final size:17
Alignment explanation
Indices: 8426303--8426337 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8426293 CCCTCCAAAA
*
8426303 TCTTTTTCTTTTTTCTT
1 TCTTTTTCTTTTCTCTT
8426320 TCTTTTCTCTTTTCTCTT
1 TCTTTT-TCTTTTCTCTT
8426338 CCCATCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TCTTTTTCTTTTCTCTT
Found at i:8428650 original size:57 final size:56
Alignment explanation
Indices: 8428586--8428702 Score: 164
Period size: 57 Copynumber: 2.1 Consensus size: 56
8428576 TCTTTTTCAT
* * *
8428586 TTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTCC-ATTTCTCCA
1 TTTTCATTTCCATTTTGGAGAAAA--ACAATCATTTCCAAATGATTCCTATTTCACCA
* *
8428643 TTTTCATTTCCATTTTGGAGAAAAATAATCATTTCCAAATGTTTCCTATTTCACCA
1 TTTTCATTTCCATTTTGGAGAAAAACAATCATTTCCAAATGATTCCTATTTCACCA
8428699 TTTT
1 TTTT
8428703 TACCATTTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
55 19 0.35
56 12 0.22
57 23 0.43
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (56 bp):
TTTTCATTTCCATTTTGGAGAAAAACAATCATTTCCAAATGATTCCTATTTCACCA
Found at i:8431724 original size:30 final size:32
Alignment explanation
Indices: 8431685--8431755 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 32
8431675 TAGTTTGCCC
* *
8431685 CCTGAACTTGTCC-AAAAGTACTTAGTTA-TA
1 CCTGAACTTGTCCAAAAAGTACCTAATTAGTA
*
8431715 CCTGCACTTGTCCAAAAAGTACCTAATTAGTA
1 CCTGAACTTGTCCAAAAAGTACCTAATTAGTA
8431747 CCTGAACTT
1 CCTGAACTT
8431756 ATTAAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 12 0.34
31 13 0.37
32 10 0.29
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (32 bp):
CCTGAACTTGTCCAAAAAGTACCTAATTAGTA
Found at i:8437779 original size:18 final size:17
Alignment explanation
Indices: 8437756--8437808 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
8437746 CCAACCCGAG
8437756 CCCAATTACAATACAAAA
1 CCCAA-TACAATACAAAA
**
8437774 CCCAATACAACCCAAGAA
1 CCCAATACAATACAA-AA
*
8437792 CCCAAAAACAATACAAA
1 CCC-AATACAATACAAA
8437809 CCTAGCAGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 8 0.29
18 11 0.39
19 9 0.32
ACGTcount: A:0.57, C:0.32, G:0.02, T:0.09
Consensus pattern (17 bp):
CCCAATACAATACAAAA
Found at i:8439422 original size:18 final size:17
Alignment explanation
Indices: 8439399--8439437 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
8439389 TGCTTTAATT
*
8439399 TTTTATTTGTTTATTTAC
1 TTTTATTTGTTGATTT-C
8439417 TTTTATTTGTTGATTTC
1 TTTTATTTGTTGATTTC
8439434 TTTT
1 TTTT
8439438 CATTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (17 bp):
TTTTATTTGTTGATTTC
Found at i:8439882 original size:111 final size:110
Alignment explanation
Indices: 8439547--8440021 Score: 768
Period size: 111 Copynumber: 4.4 Consensus size: 110
8439537 ATCAAAAACG
* * * *
8439547 AAAATTTTTCAAATAAGGCAATGTTTTACATTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCT
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCT
*
8439611 AGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
*
8439656 AAACATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAA------
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCT
8439715 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
* *
8439760 AAAAAAATTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATACCCTAAGGTGC
1 -AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
8439825 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
65 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
8439871 AAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
1 AAAAA-TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
* *
8439936 TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
65 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
* *
8439982 AAAAATTTCAAAATAAGGTAATGTTTTGCGTTT-GGAAATT
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATT
8440022 TGAGGAATGT
Statistics
Matches: 342, Mismatches: 15, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
104 44 0.13
105 56 0.16
109 35 0.10
110 56 0.16
111 151 0.44
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (110 bp):
AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
Found at i:8441529 original size:19 final size:18
Alignment explanation
Indices: 8441488--8441530 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
8441478 GTCTCTTTTT
8441488 TGCATTCATTTCATGCATC
1 TGCATTCATTTCATGCA-C
8441507 TGCATTGCATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
8441526 TGCAT
1 TGCAT
8441531 CAAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Found at i:8443922 original size:18 final size:18
Alignment explanation
Indices: 8443901--8443937 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8443891 AATAAAACTA
*
8443901 AAAAAAAAGGGAAAAAGG
1 AAAAAAAAGAGAAAAAGG
8443919 AAAAAAAAGAGAAAAAGG
1 AAAAAAAAGAGAAAAAGG
8443937 A
1 A
8443938 GAGGCCAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AAAAAAAAGAGAAAAAGG
Found at i:8445253 original size:45 final size:44
Alignment explanation
Indices: 8445202--8446480 Score: 333
Period size: 44 Copynumber: 29.1 Consensus size: 44
8445192 AGAGCTGGTT
*
8445202 GAAGACAACAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * * *
8445247 GAAGAC-ACAAACCTTGTCTCTCTTGGTTG-TAGC-AGAGCTGGTT
1 GAAGACAACAGATCTTGCCT-TCCTGATTGACAGCGA-AGCAGATC
*
8445290 GAAGACAACAGATCTTGCTTTCCTGTATTGACAGCGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * * *
8445335 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAGCGGATCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTGACAGCGAAGCAGATC
* * * *
8445378 AAAGGCAACAGATCTTGCCTTCCTGCATTGATAGCGAAGCAAATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * ** * *
8445423 GAAGAC-ACAAACCTTGCC-TCTCTCGGTT-ATAGTGGAGGTGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTGACAGCGAAGCAGATC
* * * *
8445466 GATGACAACAGATCTTGCCTTCCTAAATCGACAGCGAAGCGGATC
1 GAAGACAACAGATCTTGCCTTCCT-GATTGACAGCGAAGCAGATC
* * * * * * *
8445511 GAAGAC-ACA-AGCCTTGCCTCCCTCGGTTG-TAGTGGAGCTAG-TT
1 GAAGACAACAGA-TCTTGCCTTCCT-GATTGACAGCGAAGC-AGATC
** * * *
8445554 GAAGACAGTAGATATTGCCTTCCTGCATCGACAGCGAAGCGGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * * *
8445599 GAAGA-TACA-ACCCTTGCCTCCCTCCG-TTG-TAGTGGAGCTGGTT
1 GAAGACAACAGA-TCTTGCCTTCCT--GATTGACAGCGAAGCAGATC
* * * * * *
8445642 GAAGATAGCAGATTTTACCTTCCTGCATTGACAGTGAAGCAAATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * *
8445687 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAGCGGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTGACAGCGAAGCAGATC
* * * *
8445730 GAAGATAAAAGATCTTGCCTTCTTGCATTGACAACGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * *
8445775 AAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAGC-AGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTGACAGCGA-AGCAGATC
8445818 GAAGACAACAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * *
8445863 GAAGAC-ACA-AGCCTTGCCTCCCTCGGTTG-TAGTGGAA-CTAG-TT
1 GAAGACAACAGA-TCTTGCCTTCCT-GATTGACAG-CGAAGC-AGATC
** * * * *
8445906 GAAGACAGTAGATATTGCCTTCCTGCATCGACAGCTAAGCGGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * * *
8445951 GAAGA-TACA-AGCCTTGCCTCCCTCCG-TTG-TAGTGGAGCTGGTT
1 GAAGACAACAGA-TCTTGCCTTCCT--GATTGACAGCGAAGCAGATC
* * * * *
8445994 GAAGATAGCAGATTTTACCTTCCTGCATTGACAGCGAAGCAAATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * *
8446039 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAGCGGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTGACAGCGAAGCAGATC
* * *
8446082 GAAGACAACAGATCTTGCCTTCTTTCATTG-CAACGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTC-CTGATTGACAGCGAAGCAGATC
* * * * * * * * * *
8446126 AAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAGTGGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTGACAGCGAAGCAGATC
8446169 GAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * *
8446214 GAAGAC-ACAAACCTTTCCTCTCTCTG-TTG-CAGCGGAGCTAG-TT
1 GAAGACAACAGATCTTGCCT-TC-CTGATTGACAGCGAAGC-AGATC
8446257 GAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * *
8446302 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTGTA-A-CAGAA-CAGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTG-ACAGC-GAAGCAGATC
8446345 GAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
* * * * * * * *
8446390 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAG-TAGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CT-GATTGACAGCGA-AGCAGATC
* * *
8446433 GATGACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCGGATC
1 GAAGACAACAGATCTTGCCTTCCTG-ATTGACAGCGAAGCAGATC
8446478 GAA
1 GAA
8446481 AACACAAGCC
Statistics
Matches: 842, Mismatches: 293, Indels: 198
0.63 0.22 0.15
Matches are distributed among these distances:
42 12 0.01
43 221 0.26
44 398 0.47
45 203 0.24
46 8 0.01
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (44 bp):
GAAGACAACAGATCTTGCCTTCCTGATTGACAGCGAAGCAGATC
Found at i:8445296 original size:43 final size:43
Alignment explanation
Indices: 8445159--8445445 Score: 127
Period size: 44 Copynumber: 6.5 Consensus size: 43
8445149 ACATATCAGC
* *
8445159 GAAGACACAAACCTTGCCTCTCTCGATTGTAACAGAGCTGGTT
1 GAAGACACAAACCTTGCCTCTCTTGATTGTAGCAGAGCTGGTT
* * * * * * * *
8445202 GAAGACAACAGATCTTACCT-TCCTGCATTGACAGC-GAAGCAGATC
1 GAAGAC-ACAAACCTTGCCTCTCTTG-ATTG-TAGCAG-AGCTGGTT
* *
8445247 GAAGACACAAACCTTGTCTCTCTTGGTTGTAGCAGAGCTGGTT
1 GAAGACACAAACCTTGCCTCTCTTGATTGTAGCAGAGCTGGTT
* * * * * * * *
8445290 GAAGACAACAGATCTTG-CTTTCCTGTATTGACAGC-GAAGCAGATC
1 GAAGAC-ACAAACCTTGCCTCTCTTG-ATTG-TAGCAG-AGCTGGTT
* * * *
8445335 GAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGATCTGGTT
1 GAAGACACAAACCTTGCCTCTCTTGATTGTAGCAGAGCTGGTT
* * * * * *** *
8445378 AAAGGCAACAGATCTTGCCT-TCCTGCATTGATAGC-GAAGCAAATC
1 GAAGAC-ACAAACCTTGCCTCTCTTG-ATTG-TAGCAG-AGCTGGTT
8445423 GAAGACACAAACCTTGCCTCTCT
1 GAAGACACAAACCTTGCCTCTCT
8445446 CGGTTATAGT
Statistics
Matches: 170, Mismatches: 57, Indels: 32
0.66 0.22 0.12
Matches are distributed among these distances:
43 43 0.25
44 78 0.46
45 49 0.29
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (43 bp):
GAAGACACAAACCTTGCCTCTCTTGATTGTAGCAGAGCTGGTT
Found at i:8446626 original size:44 final size:44
Alignment explanation
Indices: 8446491--8446628 Score: 106
Period size: 44 Copynumber: 3.1 Consensus size: 44
8446481 AACACAAGCC
* * *
8446491 TTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGACAGTAGATC
1 TTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATT
* * * * * * *
8446535 TTGCCTTCCTAC-ATCGACAGCGAAGC--GTATCGAAGATA-CA-AGCT
1 TTGCCTCCCT-CGGTTG-TAGTGGAGCTGGT-T-GAAGATAGCAGA-TT
8446579 TTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATT
1 TTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATT
8446623 TTGCCT
1 TTGCCT
8446629 TCCTGCATCG
Statistics
Matches: 67, Mismatches: 17, Indels: 20
0.64 0.16 0.19
Matches are distributed among these distances:
43 17 0.25
44 34 0.51
45 16 0.24
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (44 bp):
TTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATT
Found at i:8446691 original size:88 final size:88
Alignment explanation
Indices: 8445158--8446673 Score: 2037
Period size: 88 Copynumber: 17.2 Consensus size: 88
8445148 AACATATCAG
* *** *
8445158 CGAAGACACAAACCTTGCCTCTCTCGATTGTAACAGAGCTGGTTGAAGACAACAGATCTTACCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
8445223 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * ** *
8445246 CGAAGACACAAACCTTGTCTCTCTTGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCTTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8445311 CCTGTATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * *
8445334 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGATCTGGTTAAAGGCAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8445399 CCTGCATTGATAGCGAAGCAAAT
66 CCTGCATTGACAGCGAAGCAGAT
* * *
8445422 CGAAGACACAAACCTTGCCTCTCTCGGTTATAGTGGAGGTGGTTGATGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
** * *
8445487 CCTAAATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * ** *
8445510 CGAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCTAGTTGAAGACAGTAGATATTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8445575 CCTGCATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * * * * *
8445598 CGAAGATACAACCCTTGCCTCCCTCCGTTGTAGTGGAGCTGGTTGAAGATAGCAGATTTTACCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8445663 CCTGCATTGACAGTGAAGCAAAT
66 CCTGCATTGACAGCGAAGCAGAT
* * *
8445686 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAAAAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8445751 CTTGCATTGACAACGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* **
8445774 CAAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8445839 CCTGTATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * ** *
8445862 CGAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAACTAGTTGAAGACAGTAGATATTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
8445927 CCTGCATCGACAGCTAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * * * * *
8445950 CGAAGATACAAGCCTTGCCTCCCTCCGTTGTAGTGGAGCTGGTTGAAGATAGCAGATTTTACCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8446015 CCTGCATTGACAGCGAAGCAAAT
66 CCTGCATTGACAGCGAAGCAGAT
*
8446038 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
8446103 CTTTCATTG-CAACGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
*
8446125 CAAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
8446190 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * *
8446213 CGAAGACACAAACCTTTCCTCTCTCTGTTGCAGCGGAGCTAGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
8446278 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
*** * *
8446301 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAACAGAACAGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
8446366 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
8446389 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTAGAGCTGGTTGATGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
8446454 CCTGAATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * **
8446477 CGAAAACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGACAGTAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8446542 CCTACATCGACAGCGAAGC-GTAT
66 CCTGCATTGACAGCGAAGCAG-AT
* * * * * * *
8446565 CGAAGATACAAGCTTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATTTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8446630 CCTGCATCGACAGAGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
8446653 CGAAGACACAAGCCTTACCTC
1 CGAAGACACAAACCTTGCCTC
8446674 CCTCAGCAGT
Statistics
Matches: 1266, Mismatches: 159, Indels: 6
0.88 0.11 0.00
Matches are distributed among these distances:
87 82 0.06
88 1183 0.93
89 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (88 bp):
CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
CCTGCATTGACAGCGAAGCAGAT
Found at i:8446915 original size:132 final size:132
Alignment explanation
Indices: 8446672--8446962 Score: 404
Period size: 132 Copynumber: 2.2 Consensus size: 132
8446662 AAGCCTTACC
* * ** * *
8446672 TCCCTCAGCAGTAGCGGAGCAGATCGTAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
* * * * ** *
8446737 AGATTTAAGCCATTAATTCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTTTG
66 AGATTTAAGCCATTAATCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAAGATTGCAAATTCTG
8446802 TCA
131 T-A
8446805 -CCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
* * * *
8446869 AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAATATTGTAGATTCTG
66 AGATTTAAGCCATTAATCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAAGATTGCAAATTCTG
8446934 TA
131 TA
*
8446936 TCCCTAAGCAGTAGTGGAGCAAATCAA
1 TCCCTAAGCAGTAGTGGAGCAGATCAA
8446963 CAACGGCGAA
Statistics
Matches: 139, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
131 1 0.01
132 138 0.99
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (132 bp):
TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
AGATTTAAGCCATTAATCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAAGATTGCAAATTCTG
TA
Found at i:8447072 original size:50 final size:50
Alignment explanation
Indices: 8447011--8447457 Score: 321
Period size: 50 Copynumber: 9.0 Consensus size: 50
8447001 AATTGAAGTC
* * *
8447011 ACGGCGAATCTTGCGTCCCTGACATTGCAATTCAGAAGATTGAAGCCACA
1 ACGGCGAATCTTGCTTCCCAGACATTGCAATTCAAAAGATTGAAGCCACA
* * * **** * *
8447061 ACGGTGAATCTTACTTCCAAG-CGA-TGCAGCGGAACAGATTGAAGTCACA
1 ACGGCGAATCTTGCTTCCCAGAC-ATTGCAATTCAAAAGATTGAAGCCACA
* *
8447110 ACGGCGAATCTTGCGTCCCTGACATTGCAATTCAAAAGATTGAAGCCACA
1 ACGGCGAATCTTGCTTCCCAGACATTGCAATTCAAAAGATTGAAGCCACA
* * * * * **** *
8447160 ACGGCGAGTATTACTTCCAAG-CAATGCAGCGAAAAAGATTGAAGTCACA
1 ACGGCGAATCTTGCTTCCCAGACATTGCAATTCAAAAGATTGAAGCCACA
* * * * * *
8447209 ACAGTGAATCTTGCGTCCCCGACACTGCAATTCAAAAGATTGAAGCCACC
1 ACGGCGAATCTTGCTTCCCAGACATTGCAATTCAAAAGATTGAAGCCACA
* * * * * *
8447259 ACGACGAATCTTACTTCCCAGACAATGC-A-GCAAAACAGATTGAAGCTACG
1 ACGGCGAATCTTGCTTCCCAGACATTGCAATTC-AAA-AGATTGAAGCCACA
* * *
8447309 ACGGTGAATCTCGCTTCCCCGACATTGCAATTCAAAAGATTGAAGCCACA
1 ACGGCGAATCTTGCTTCCCAGACATTGCAATTCAAAAGATTGAAGCCACA
* * ** ** ** * * *
8447359 ACGGCGAATCTTACCTTCCCAGGCGGTGCCGTGGAACAGATTGAAGCTACG
1 ACGGCGAATCTT-GCTTCCCAGACATTGCAATTCAAAAGATTGAAGCCACA
* * * *
8447410 ACGGCGAATCTTACTTCCCCGACATTACAGTT-AAACAGATTGAAGCCA
1 ACGGCGAATCTTGCTTCCCAGACATTGCAATTCAAA-AGATTGAAGCCA
8447458 ATAATTCTAT
Statistics
Matches: 294, Mismatches: 93, Indels: 20
0.72 0.23 0.05
Matches are distributed among these distances:
48 1 0.00
49 77 0.26
50 173 0.59
51 42 0.14
52 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (50 bp):
ACGGCGAATCTTGCTTCCCAGACATTGCAATTCAAAAGATTGAAGCCACA
Found at i:8447157 original size:99 final size:99
Alignment explanation
Indices: 8446962--8447457 Score: 590
Period size: 99 Copynumber: 5.0 Consensus size: 99
8446952 GAGCAAATCA
* * *
8446962 ACAACGGCGAATCTTACTTCCAAGTGATGCAGCAGAACAAATTGAAGT--C-ACGGCGAATCTTG
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGGAACAGATTGAAGTCACAACGGCGAATCTTG
* *
8447024 CGTCCCTGACATTGCAATTCAGAAGATTGAAGCC
66 CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
*
8447058 ACAACGGTGAATCTTACTTCCAAGCGATGCAGCGGAACAGATTGAAGTCACAACGGCGAATCTTG
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGGAACAGATTGAAGTCACAACGGCGAATCTTG
*
8447123 CGTCCCTGACATTGCAATTCAAAAGATTGAAGCC
66 CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* * * * * * *
8447157 ACAACGGCGAGTATTACTTCCAAGCAATGCAGCGAAAAAGATTGAAGTCACAACAGTGAATCTTG
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGGAACAGATTGAAGTCACAACGGCGAATCTTG
*
8447222 CGTCCCCGACACTGCAATTCAAAAGATTGAAGCC
66 CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* * * * ** * *
8447256 ACCACGACGAATCTTACTTCCCAGACAATGCAGCAAAACAGATTGAAG-CTACGACGGTGAATCT
1 ACAACGGCGAATCTTACTTCCAAG-CGATGCAGCGGAACAGATTGAAGTC-ACAACGGCGAATCT
* *
8447320 CGCTTCCCCGACATTGCAATTCAAAAGATTGAAGCC
64 TGCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* * * * *
8447356 ACAACGGCGAATCTTACCTTCCCAGGCGGTGCCGTGGAACAGATTGAAG-CTACGACGGCGAATC
1 ACAACGGCGAATCTTA-CTT-CCAAGCGATGCAGCGGAACAGATTGAAGTC-ACAACGGCGAATC
* * * *
8447420 TTACTTCCCCGACATTACAGTT-AAACAGATTGAAGCC
63 TTGCGTCCCCGACATTGCAATTCAAA-AGATTGAAGCC
8447457 A
1 A
8447458 ATAATTCTAT
Statistics
Matches: 350, Mismatches: 42, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
96 44 0.13
98 1 0.00
99 155 0.44
100 83 0.24
101 64 0.18
102 3 0.01
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (99 bp):
ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGGAACAGATTGAAGTCACAACGGCGAATCTTG
CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
Done.