Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 35 of 170
Found at i:9654023 original size:19 final size:19
Alignment explanation
Indices: 9653959--9654027 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
9653949 GCGTGTGAGG
* *
9653959 TAGCCACACAGGTGTGGGA
1 TAGCCACACAAGTATGGGA
**
9653978 TAGCCACACAACCATGTTTGG-
1 TAGCCACACAAGTATG---GGA
9653999 -AGCCACACAAGTATGGGA
1 TAGCCACACAAGTATGGGA
9654017 TAGCCACACAA
1 TAGCCACACAA
9654028 CCAAGTATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
17 2 0.05
19 22 0.56
20 13 0.33
22 2 0.05
ACGTcount: A:0.33, C:0.26, G:0.25, T:0.16
Consensus pattern (19 bp):
TAGCCACACAAGTATGGGA
Found at i:9659301 original size:16 final size:15
Alignment explanation
Indices: 9659278--9659311 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
9659268 GTAAATGGCA
9659278 AAATAGTAATTAAAC
1 AAATAGTAATTAAAC
9659293 AAATAAGTAATTAAAC
1 AAAT-AGTAATTAAAC
9659309 AAA
1 AAA
9659312 AAGATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (15 bp):
AAATAGTAATTAAAC
Found at i:9663808 original size:30 final size:30
Alignment explanation
Indices: 9663731--9664957 Score: 2018
Period size: 29 Copynumber: 41.2 Consensus size: 30
9663721 CATTGTATTT
*
9663731 GTGTATTTT-AAAAT-AAAAAATATATCTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9663759 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9663788 GTGTATTTTATAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9663818 GTGCATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9663847 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9663877 GTGTATTTTAAAAATAAAGAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9663907 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9663936 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9663965 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9663995 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664024 GTGTATTTTAAAAATAAAAAAA-ATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9664053 GTGTATTTTAAAAATAAAAAATATATGCATTATA
1 GTGTATTTTAAAAATAAAAAA-ATAT--A-TGTA
9664087 TTTGTGTATTTTAAAAATAAAAAAATATATGTA
1 ---GTGTATTTTAAAAATAAAAAAATATATGTA
*
9664120 GTGTATTTTAAAAATAAAAAAATTTATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664150 GTGTATTTTAAAAAT--AAAAA-ATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664177 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664206 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664235 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9664265 GTGTATTTTAAAAATAAAGAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664295 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664324 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664353 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664382 GTGTATTTTAAAAATAAAAAAA-ATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9664411 GTGTATTTTAAAAATAAAAAATATATGCATTATA
1 GTGTATTTTAAAAATAAAAAA-ATAT--A-TGTA
9664445 TTTGTGTATTTTAAAAATAAAAAAATATATGTA
1 ---GTGTATTTTAAAAATAAAAAAATATATGTA
*
9664478 GTGTATTTTAAAAATAAAAAAATTTATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664508 GTGTATTTTAAAAATAAAAAAA-ATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664537 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9664567 GTGTATTTTAAAAAT-AAAAAA-ACATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
* *
9664595 GTGTATTTTAAAAATAAAGAAATATATATA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664625 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664655 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664684 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664713 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664742 GTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAAATATATGTA
*
9664773 GTGTATTTTAAAAATAAAAAAATATATTTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664803 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664832 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
9664862 GTGTGTTTTAAAAATAAAAAAA-ATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664891 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664921 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
9664951 GTGTATT
1 GTGTATT
9664958 CGGTTTATTC
Statistics
Matches: 1140, Mismatches: 27, Indels: 62
0.93 0.02 0.05
Matches are distributed among these distances:
27 21 0.02
28 40 0.04
29 521 0.46
30 459 0.40
31 33 0.03
33 8 0.01
34 8 0.01
36 8 0.01
37 42 0.04
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (30 bp):
GTGTATTTTAAAAATAAAAAAATATATGTA
Found at i:9663826 original size:59 final size:59
Alignment explanation
Indices: 9663731--9664957 Score: 2018
Period size: 59 Copynumber: 20.6 Consensus size: 59
9663721 CATTGTATTT
*
9663731 GTGTATTTT-AAAAT-AAAAAATATATCTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
* *
9663788 GTGTATTTTATAAATAAAAAAATATATGTAGTGCATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
9663847 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAGAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAA-AAATATATGTA
9663907 GTGTATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
9663965 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
9664024 GTGTATTTTAAAAATAAAAAAA-ATATGTAGTGTATTTTAAAAATAAAAAATATATGCATTATA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATG-----TA
*
9664087 TTTGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATTTATGTA
1 ---GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
9664150 GTGTATTTTAAAAAT--AAAAA-ATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
9664206 GTGTATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
*
9664265 GTGTATTTTAAAAATAAAGAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
9664324 GTGTATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
9664382 GTGTATTTTAAAAATAAAAAAA-ATATGTAGTGTATTTTAAAAATAAAAAATATATGCATTATA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATG-----TA
*
9664445 TTTGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATTTATGTA
1 ---GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
9664508 GTGTATTTTAAAAATAAAAAAA-ATATGTAGTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
* *
9664567 GTGTATTTTAAAAAT-AAAAAA-ACATGTAGTGTATTTTAAAAATAAAGAAATATATATA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAA-AAATATATGTA
9664625 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
9664684 GTGTATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
*
9664742 GTGTATTTTAAAAATAAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATTTA
1 GTGTATTTTAAAAAT-AAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
9664803 GTGTATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
*
9664862 GTGTGTTTTAAAAATAAAAAAA-ATATGTAGTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
9664921 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATT
1 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATT
9664958 CGGTTTATTC
Statistics
Matches: 1114, Mismatches: 19, Indels: 71
0.93 0.02 0.06
Matches are distributed among these distances:
56 28 0.03
57 39 0.04
58 292 0.26
59 445 0.40
60 164 0.15
61 28 0.03
63 8 0.01
66 44 0.04
67 44 0.04
68 22 0.02
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (59 bp):
GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAATATATGTA
Found at i:9665311 original size:39 final size:39
Alignment explanation
Indices: 9665268--9665348 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
9665258 ACTAAAGTGA
9665268 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
9665307 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
9665346 AAA
1 AAA
9665349 TCGATTGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (39 bp):
AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
Found at i:9668822 original size:21 final size:21
Alignment explanation
Indices: 9668798--9668850 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
9668788 CATTGTTTCT
* *
9668798 AATCTCACTGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
9668819 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
9668840 AATCTCACCGC
1 AATCTCACCGC
9668851 CACCACTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:9669802 original size:29 final size:29
Alignment explanation
Indices: 9669769--9669834 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
9669759 ACAACCTGGG
9669769 ACACGGGCTGTCACACGACCATGTATCAC
1 ACACGGGCTGTCACACGACCATGTATCAC
* *
9669798 ACACGGGCTGTCACACGACCGTGTGTCAC
1 ACACGGGCTGTCACACGACCATGTATCAC
9669827 ACACGGGC
1 ACACGGGC
9669835 ATGTGCGCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.24, C:0.35, G:0.26, T:0.15
Consensus pattern (29 bp):
ACACGGGCTGTCACACGACCATGTATCAC
Found at i:9669826 original size:15 final size:15
Alignment explanation
Indices: 9669777--9669828 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
9669767 GGACACGGGC
*
9669777 TGTCACACGACCATG
1 TGTCACACGACCGTG
* *
9669792 TATCACAC-A-CGGG
1 TGTCACACGACCGTG
9669805 CTGTCACACGACCGTG
1 -TGTCACACGACCGTG
9669821 TGTCACAC
1 TGTCACAC
9669829 ACGGGCATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
13 2 0.07
14 8 0.28
15 16 0.55
16 3 0.10
ACGTcount: A:0.25, C:0.35, G:0.21, T:0.19
Consensus pattern (15 bp):
TGTCACACGACCGTG
Found at i:9685445 original size:3 final size:3
Alignment explanation
Indices: 9685437--9685506 Score: 81
Period size: 3 Copynumber: 23.3 Consensus size: 3
9685427 ACATGTGTAT
*
9685437 GAA GAA GAA GAA GAA GAA GAA GAA GAA GGA GAA GAA GAA GAA GATA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA-A
* *
9685483 -AA GGA -AA GAAA GAA GAT GAA GAA G
1 GAA GAA GAA G-AA GAA GAA GAA GAA G
9685507 GAAAATAAGG
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
2 2 0.04
3 51 0.89
4 4 0.07
ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:9685510 original size:21 final size:21
Alignment explanation
Indices: 9685437--9685508 Score: 94
Period size: 21 Copynumber: 3.4 Consensus size: 21
9685427 ACATGTGTAT
*
9685437 GAAGAAGAAGAAGAAGAAGAA
1 GAAGAAGGAGAAGAAGAAGAA
9685458 GAAGAAGGAGAAGAAGAAGAA
1 GAAGAAGGAGAAGAAGAAGAA
*
9685479 GATA-AAGGA-AAGAAAGAAGAT
1 GA-AGAAGGAGAAG-AAGAAGAA
9685500 GAAGAAGGA
1 GAAGAAGGA
9685509 AAATAAGGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
20 4 0.09
21 41 0.89
22 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.03
Consensus pattern (21 bp):
GAAGAAGGAGAAGAAGAAGAA
Found at i:9691108 original size:25 final size:26
Alignment explanation
Indices: 9691060--9691113 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
9691050 CATAATTGAA
* * *
9691060 ATGAAATGGATTGATTTTGTATAT-T
1 ATGAAATAGATTGATTATGAATATAT
*
9691085 ATGAAATATATTGATTATGAATATAT
1 ATGAAATAGATTGATTATGAATATAT
9691111 ATG
1 ATG
9691114 TATTAAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (26 bp):
ATGAAATAGATTGATTATGAATATAT
Found at i:9691118 original size:17 final size:15
Alignment explanation
Indices: 9691081--9691123 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
9691071 TGATTTTGTA
9691081 TATTATGAAATATAT
1 TATTATGAAATATAT
9691096 TGATTATGAATATATAT
1 T-ATTATGAA-ATATAT
*
9691113 GTATTAAGAAA
1 -TATTATGAAA
9691124 AATGTGATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 1 0.04
16 9 0.38
17 13 0.54
18 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.42
Consensus pattern (15 bp):
TATTATGAAATATAT
Found at i:9694666 original size:43 final size:41
Alignment explanation
Indices: 9694604--9694685 Score: 119
Period size: 43 Copynumber: 2.0 Consensus size: 41
9694594 TTTATCCTAG
* *
9694604 AAAAAAATTAAAAAGAGGAGAAGATAATCTTGGGTTGTTCA
1 AAAAAAATTAAAAAGAGGAGAAGATAAACATGGGTTGTTCA
*
9694645 AAAAAGAATTTAAAAATAGGAGAAGATAAACATGGGTTGTT
1 AAAAA-AA-TTAAAAAGAGGAGAAGATAAACATGGGTTGTT
9694686 GGATATACCT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 5 0.14
42 2 0.06
43 29 0.81
ACGTcount: A:0.50, C:0.04, G:0.22, T:0.24
Consensus pattern (41 bp):
AAAAAAATTAAAAAGAGGAGAAGATAAACATGGGTTGTTCA
Found at i:9700361 original size:43 final size:42
Alignment explanation
Indices: 9700279--9700362 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
9700269 TTTATCCTAG
* * *
9700279 AAAAAATAATTTAAAAAGAGGAGAAGATAATCTTGGTTGTTC
1 AAAAAAGAATTTAAAAAGAGGAGAAGATAAACTGGGTTGTTC
*
9700321 AAAAAAGAATTTAAAAAGAGGAGAATATAAACATGGGTTGTT
1 AAAAAAGAATTTAAAAAGAGGAGAAGATAAAC-TGGGTTGTT
9700363 GGATTTACCC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 29 0.78
43 8 0.22
ACGTcount: A:0.50, C:0.04, G:0.20, T:0.26
Consensus pattern (42 bp):
AAAAAAGAATTTAAAAAGAGGAGAAGATAAACTGGGTTGTTC
Found at i:9710756 original size:21 final size:21
Alignment explanation
Indices: 9710727--9710767 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9710717 AAAACAAAAA
*
9710727 CATATGTATAAAATATATAAG
1 CATACGTATAAAATATATAAG
**
9710748 CATACGTATACTATATATAA
1 CATACGTATAAAATATATAA
9710768 AACAATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (21 bp):
CATACGTATAAAATATATAAG
Found at i:9710818 original size:3 final size:3
Alignment explanation
Indices: 9710810--9710848 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
9710800 GCGCATGAAT
9710810 ATA ATA ATA ATA ATA ATAA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA AT
9710849 GATACAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9710834 original size:19 final size:19
Alignment explanation
Indices: 9710810--9710847 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9710800 GCGCATGAAT
9710810 ATAATAATAATAATAATAA
1 ATAATAATAATAATAATAA
9710829 ATAATAATAATAATAATAA
1 ATAATAATAATAATAATAA
9710848 TGATACAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAATAATAATAATAATAA
Found at i:9711345 original size:19 final size:19
Alignment explanation
Indices: 9711321--9711431 Score: 204
Period size: 19 Copynumber: 5.8 Consensus size: 19
9711311 AATCATATCT
9711321 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
9711340 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
9711359 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
9711378 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
9711397 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9711416 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
9711432 CTTGAAGATT
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 88 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9712324 original size:32 final size:32
Alignment explanation
Indices: 9712233--9712325 Score: 125
Period size: 32 Copynumber: 2.9 Consensus size: 32
9712223 AACATGACCA
* *
9712233 TGTGGCCCACACGGCCCAAATATCCCAAATCG
1 TGTGGCCCACACAGCCCAAATATCCCAGATCG
*
9712265 TGTGGCCCACACA-TCCAGAATATCCCAGATCG
1 TGTGGCCCACACAGCCCA-AATATCCCAGATCG
* *
9712297 TGTGGCCTACACAGCCCAAATAGCCCAGA
1 TGTGGCCCACACAGCCCAAATATCCCAGA
9712326 CCGTTTGGTC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
31 3 0.06
32 47 0.89
33 3 0.06
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.16
Consensus pattern (32 bp):
TGTGGCCCACACAGCCCAAATATCCCAGATCG
Found at i:9717248 original size:3 final size:3
Alignment explanation
Indices: 9717240--9717277 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
9717230 AGGGTTTTAA
9717240 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9717278 AAGCTATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9717815 original size:17 final size:17
Alignment explanation
Indices: 9717793--9717825 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9717783 TATTTTAAAT
9717793 ATTTTTAATAATTTTAC
1 ATTTTTAATAATTTTAC
*
9717810 ATTTTTTATAATTTTA
1 ATTTTTAATAATTTTA
9717826 AAAATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTTAATAATTTTAC
Found at i:9717835 original size:20 final size:18
Alignment explanation
Indices: 9717784--9717844 Score: 79
Period size: 20 Copynumber: 3.3 Consensus size: 18
9717774 TCAACCTAAT
9717784 ATTTTAAATATTTTTAATA
1 ATTTTAAATATTTTT-ATA
*
9717803 ATTTTACAT-TTTTTATA
1 ATTTTAAATATTTTTATA
9717820 ATTTTAAAAATATTTTTATA
1 ATTTT--AAATATTTTTATA
9717840 ATTTT
1 ATTTT
9717845 TTTGAAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
17 8 0.22
18 5 0.14
19 11 0.30
20 13 0.35
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTAAATATTTTTATA
Found at i:9718179 original size:19 final size:18
Alignment explanation
Indices: 9718132--9718180 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
9718122 TTTTATCTAA
*
9718132 TTTATTTTTCTATAATTT
1 TTTATTTTTTTATAATTT
* *
9718150 TTTAATTTTTTATTCATTT
1 TTTATTTTTTTA-TAATTT
9718169 TTTATTTTTTTA
1 TTTATTTTTTTA
9718181 CTTTCTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATTTTTTTATAATTT
Found at i:9719179 original size:106 final size:106
Alignment explanation
Indices: 9718994--9719205 Score: 361
Period size: 106 Copynumber: 2.0 Consensus size: 106
9718984 CATACGTAAT
* * *
9718994 TTGCAACCTGCAAGTTAGTGGCAATGGTTTATCTTCCTGGAATGCAAGGGGTAAGAACAACAAAT
1 TTGCAACCTGCAAGTTAATGGCAACGGTTCATCTTCCTGGAATGCAAGGGGTAAGAACAACAAAT
* *
9719059 AGAAAAATGACAAGCAAGAATAATTTAAAATCATGCAATGG
66 AGAAAAACGACAAGCAAGAATAATATAAAATCATGCAATGG
9719100 TTGCAACCTGCAAGTTAATGGCAACGGTTCATCTTCCTGGAATGCAAGGGGTAAGAACAACAAAT
1 TTGCAACCTGCAAGTTAATGGCAACGGTTCATCTTCCTGGAATGCAAGGGGTAAGAACAACAAAT
* *
9719165 AGAAAGACGACAAGCAAGAATCATATAAAATCATGCAATGG
66 AGAAAAACGACAAGCAAGAATAATATAAAATCATGCAATGG
9719206 CAAATGTGAT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 99 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (106 bp):
TTGCAACCTGCAAGTTAATGGCAACGGTTCATCTTCCTGGAATGCAAGGGGTAAGAACAACAAAT
AGAAAAACGACAAGCAAGAATAATATAAAATCATGCAATGG
Found at i:9722976 original size:98 final size:95
Alignment explanation
Indices: 9722822--9723015 Score: 336
Period size: 97 Copynumber: 2.0 Consensus size: 95
9722812 TGAGCAGACA
9722822 CTAGCTCATATTGGAGAAGTAAAGTTTCAGTAAAAAAATGAAAAATTAAAGATTCTTAAAGTAGC
1 CTAGCTCATATTGGAGAAGTAAAGTTTCAGTAAAAAAATGAAAAATTAAAGATTCTTAAAGTAGC
9722887 AAAAAAAAGGAAATCCTACAGAAATAGGGCC
66 -AAAAAAAGGAAATCCTACAGAAATAGGGCC
*
9722918 CTAGCTCATATTGGAGGAGAGGTAAAGTTTCAGT-AAAAAATGAAAAATTGAAGATTCTTAAAGT
1 CTAGCTCATATTGGA-GA-A-GTAAAGTTTCAGTAAAAAAATGAAAAATTAAAGATTCTTAAAGT
9722982 AGCAAAAAAAGGAAATCCTACAGAAATAGGGCC
63 AGCAAAAAAAGGAAATCCTACAGAAATAGGGCC
9723015 C
1 C
9723016 CCTAAAAACA
Statistics
Matches: 94, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
96 15 0.16
97 33 0.35
98 33 0.35
99 13 0.14
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.22
Consensus pattern (95 bp):
CTAGCTCATATTGGAGAAGTAAAGTTTCAGTAAAAAAATGAAAAATTAAAGATTCTTAAAGTAGC
AAAAAAAGGAAATCCTACAGAAATAGGGCC
Found at i:9727742 original size:195 final size:194
Alignment explanation
Indices: 9727409--9727798 Score: 536
Period size: 195 Copynumber: 2.0 Consensus size: 194
9727399 TACAACCACC
*
9727409 CTAGAGAAAATTAATAAAATGCAGAACAAAAGCACAAACCAAATAAGCAACAAAAACTTAAAAAG
1 CTAGAGAAAATTAATAAAATGCAGAACAAAAGCACAAACCAAATAAACAACAAAAACTTAAAAAG
* *
9727474 CAGAAGTTTAATGCACTTCATTATCTTATGACTTAAGAGAAGGGGGACTTCTAATAAATTGTACC
66 CAGAAGTTTAATGCACTTCATTATCTTATGACTTAAGAAAAAGGGGACTTCTAATAAATTGTACC
* * *
9727539 AACAGATTCACATTTCAAAAAGGATCAATTTAC-AGGATTAG-CCTTTGGATAGAAGATTAAGCT
131 AACAGATTCACATTTCAAAAAGGATCAATTTACTAGAATT-GCCCCTTGAATAGAAGATTAAGCT
* * ** *
9727602 CTAGAGAGAATTAATAAAATGTAGAACAACAAAAGTGCAAACCAAATAAACGAA-AAAAA-TTTA
1 CTAGAGAAAATTAATAAAATGCAG---AACAAAAGCACAAACCAAATAAAC-AACAAAAACTTAA
* ** *
9727665 TATTCAGAAGTTTAATGTACTTCATTATCTTATGACTTAAGAAAAAGGGGACTTCTAATAAATTG
62 AAAGCAGAAGTTTAATGCACTTCATTATCTTATGACTTAAGAAAAAGGGGACTTCTAATAAATTG
*** *
9727730 TACGTCCAGATTCACATTTCAAAAAGGATCAATTTACTTGAATTGCCCCTTGAATAGAAGATTAA
127 TACCAACAGATTCACATTTCAAAAAGGATCAATTTACTAGAATTGCCCCTTGAATAGAAGATTAA
9727795 GCT
192 GCT
9727798 C
1 C
9727799 CATAGTTGCA
Statistics
Matches: 172, Mismatches: 19, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
193 22 0.13
195 97 0.56
196 51 0.30
197 2 0.01
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (194 bp):
CTAGAGAAAATTAATAAAATGCAGAACAAAAGCACAAACCAAATAAACAACAAAAACTTAAAAAG
CAGAAGTTTAATGCACTTCATTATCTTATGACTTAAGAAAAAGGGGACTTCTAATAAATTGTACC
AACAGATTCACATTTCAAAAAGGATCAATTTACTAGAATTGCCCCTTGAATAGAAGATTAAGCT
Found at i:9729021 original size:34 final size:34
Alignment explanation
Indices: 9728958--9729063 Score: 115
Period size: 34 Copynumber: 3.0 Consensus size: 34
9728948 TTTAACAATC
*
9728958 ATTTGTACTACCACTTAAAAAGGCCGTAATTAGGG
1 ATTTGGACTACCACTT-AAAAGGCCGTAATTAGGG
*
9728993 ATTTGGACTACCACTTAATAGGCCGTAATTAGGG
1 ATTTGGACTACCACTTAAAAGGCCGTAATTAGGG
** * *
9729027 AGGTAACGGACTACCACTTAAGA-GCCGTGATTAGGG
1 A--T-TTGGACTACCACTTAAAAGGCCGTAATTAGGG
9729063 A
1 A
9729064 GGTAACTGAG
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
34 18 0.29
35 15 0.24
36 14 0.23
37 15 0.24
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (34 bp):
ATTTGGACTACCACTTAAAAGGCCGTAATTAGGG
Found at i:9729061 original size:36 final size:37
Alignment explanation
Indices: 9728964--9729069 Score: 130
Period size: 36 Copynumber: 2.9 Consensus size: 37
9728954 AATCATTTGT
* **
9728964 ACTACCACTTAAAAAGGCCGTAATTAGGGA--T-TTGG
1 ACTACCACTT-AAGAGGCCGTAATTAGGGAGGTAACGG
*
9728999 ACTACCACTTAATAGGCCGTAATTAGGGAGGTAACGG
1 ACTACCACTTAAGAGGCCGTAATTAGGGAGGTAACGG
*
9729036 ACTACCACTTAAGA-GCCGTGATTAGGGAGGTAAC
1 ACTACCACTTAAGAGGCCGTAATTAGGGAGGTAAC
9729070 TGAGTTTAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
34 18 0.29
35 10 0.16
36 20 0.32
37 15 0.24
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (37 bp):
ACTACCACTTAAGAGGCCGTAATTAGGGAGGTAACGG
Found at i:9731613 original size:16 final size:19
Alignment explanation
Indices: 9731565--9731614 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 19
9731555 TTTATTCATA
9731565 TAATAAATTATTGATATAAT
1 TAATAAATTATTGATAT-AT
9731585 TAATATAATTTATT-AT-T-T
1 TAATA-AA-TTATTGATATAT
9731603 TAATAAATTATT
1 TAATAAATTATT
9731615 TAATATTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.18
17 2 0.07
18 6 0.21
20 6 0.21
21 4 0.14
22 5 0.18
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAATAAATTATTGATATAT
Found at i:9731666 original size:13 final size:14
Alignment explanation
Indices: 9731630--9731670 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
9731620 TTTCAATTTT
9731630 ATTTTAACAATAA-A
1 ATTTTAA-AATAATA
*
9731644 GTTTTAAAATAATA
1 ATTTTAAAATAATA
9731658 ATTTT-AAATAATA
1 ATTTTAAAATAATA
9731671 TTCTTCACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (14 bp):
ATTTTAAAATAATA
Found at i:9734527 original size:16 final size:16
Alignment explanation
Indices: 9734506--9734559 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
9734496 TTTGGTTCGC
9734506 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
9734522 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGG
9734538 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
9734554 CGTAAT
1 TGTAAT
9734560 AGTAATTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.37, C:0.04, G:0.33, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:9734593 original size:45 final size:44
Alignment explanation
Indices: 9734541--9734634 Score: 111
Period size: 44 Copynumber: 2.1 Consensus size: 44
9734531 ATAGAGCTGT
* *
9734541 AATGGAATAGAGGC-GTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGA-ACTGTAATAAT-ATTC-ATGTGTTTGGTTGAATGG
* *
9734586 CATGGAATAGAACTGTAATAATATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
9734630 AATGG
1 AATGG
9734635 TGTTGTAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.02
44 24 0.57
45 17 0.40
ACGTcount: A:0.32, C:0.05, G:0.28, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAATATTCATGTGTTTGGTTGAATGG
Found at i:9738293 original size:18 final size:18
Alignment explanation
Indices: 9738260--9738312 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
9738250 ACTCATGTAT
* *
9738260 TTATGCTAACTCATGTTA
1 TTATGCGAACCCATGTTA
* *
9738278 TTCTGCGAACCTATGTTA
1 TTATGCGAACCCATGTTA
9738296 TTATGCGAACCCATGTT
1 TTATGCGAACCCATGTT
9738313 GTATGTTATC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (18 bp):
TTATGCGAACCCATGTTA
Found at i:9738317 original size:25 final size:25
Alignment explanation
Indices: 9738289--9738339 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
9738279 TCTGCGAACC
*
9738289 TATGTTATTATGCGAACCCATGTTG
1 TATGTTATCATGCGAACCCATGTTG
* * *
9738314 TATGTTATCATGTGGACCTATGTTG
1 TATGTTATCATGCGAACCCATGTTG
9738339 T
1 T
9738340 TGTGCAAACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.43
Consensus pattern (25 bp):
TATGTTATCATGCGAACCCATGTTG
Found at i:9738748 original size:20 final size:20
Alignment explanation
Indices: 9738688--9738749 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
9738678 GGGCATCTAA
* *
9738688 TTGCACATTTGTGCCTCTGA
1 TTGCACATTCGTGCCTCTGT
* *
9738708 TTGCACATTCATGCCTTTGT
1 TTGCACATTCGTGCCTCTGT
9738728 TTGCAC-TTCGGTGCCTCTGT
1 TTGCACATTC-GTGCCTCTGT
9738748 TT
1 TT
9738750 AGCATTTCGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 3 0.09
20 32 0.91
ACGTcount: A:0.11, C:0.26, G:0.19, T:0.44
Consensus pattern (20 bp):
TTGCACATTCGTGCCTCTGT
Found at i:9739105 original size:43 final size:43
Alignment explanation
Indices: 9738989--9739158 Score: 193
Period size: 43 Copynumber: 3.9 Consensus size: 43
9738979 TAAAATATAT
* * * * *
9738989 GATGATGCAC-TGTGTGTGCCAATATATTTGCTTTGGTTTATCC
1 GATGATGCACTTGTATGTGCCAGTATAGTTGC-TTCGTTTATTC
9739032 GATGATGCACTGTGTATGTGCCAGTATAGTTGCTTCGATTTATTC
1 GATGATGCACT-TGTATGTGCCAGTATAGTTGCTTCG-TTTATTC
*
9739077 GATGATGCA-TTGTATGTGTCAGTATAGTTGCTTCTGTTTATTC
1 GATGATGCACTTGTATGTGCCAGTATAGTTGCTTC-GTTTATTC
* * *
9739120 GATGATGCACAT-TATGTGCTAGTATAGTTACTTCAGTTT
1 GATGATGCACTTGTATGTGCCAGTATAGTTGCTTC-GTTT
9739159 TACCCGATGA
Statistics
Matches: 111, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 72 0.65
44 6 0.05
45 33 0.30
ACGTcount: A:0.21, C:0.14, G:0.23, T:0.42
Consensus pattern (43 bp):
GATGATGCACTTGTATGTGCCAGTATAGTTGCTTCGTTTATTC
Found at i:9744695 original size:17 final size:18
Alignment explanation
Indices: 9744673--9744707 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
9744663 AACATAATGC
9744673 AAAA-TTGGTATCAATAT
1 AAAATTTGGTATCAATAT
9744690 AAAATTTTGGTATCAATA
1 AAAA-TTTGGTATCAATA
9744708 AAATTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
19 12 0.75
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (18 bp):
AAAATTTGGTATCAATAT
Found at i:9745126 original size:22 final size:22
Alignment explanation
Indices: 9745101--9745147 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
9745091 TAGTTCAATA
*
9745101 GAACAGTAAAATTCTCTTGCAT
1 GAACAGTAAAATTCTCTGGCAT
*
9745123 GAACAGTGAAATTCTCTGGCAT
1 GAACAGTAAAATTCTCTGGCAT
9745145 GAA
1 GAA
9745148 TAGAGAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (22 bp):
GAACAGTAAAATTCTCTGGCAT
Found at i:9745162 original size:23 final size:22
Alignment explanation
Indices: 9745111--9745205 Score: 102
Period size: 23 Copynumber: 4.2 Consensus size: 22
9745101 GAACAGTAAA
*
9745111 ATTCTCTTGCATGAACAGTGAA-
1 ATTCTC-TGCATGAATAGTGAAG
*
9745133 ATTCTCTGGCATGAATAGAGAAG
1 ATTCTCT-GCATGAATAGTGAAG
9745156 ATTCTCTGCAATGAATAGTGAAG
1 ATTCTCTGC-ATGAATAGTGAAG
* * *
9745179 ATACTCTACAATGGATAGTGAAG
1 ATTCTCTGC-ATGAATAGTGAAG
9745202 ATTC
1 ATTC
9745206 CTTGAAAAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
21 1 0.02
22 20 0.32
23 42 0.67
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (22 bp):
ATTCTCTGCATGAATAGTGAAG
Found at i:9761705 original size:7 final size:7
Alignment explanation
Indices: 9761693--9761718 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9761683 TTCATTAAAT
9761693 ATTTAAC
1 ATTTAAC
9761700 ATTTAAC
1 ATTTAAC
9761707 ATTTAAC
1 ATTTAAC
9761714 ATTTA
1 ATTTA
9761719 CTAATATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (7 bp):
ATTTAAC
Found at i:9770120 original size:9 final size:9
Alignment explanation
Indices: 9770098--9770138 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
9770088 GGGTTATAGT
*
9770098 TTATTATTA
1 TTATTATGA
*
9770107 CTATTATGA
1 TTATTATGA
9770116 TTATTATGA
1 TTATTATGA
9770125 TTATTATGA
1 TTATTATGA
9770134 TTATT
1 TTATT
9770139 TTGGGTAGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (9 bp):
TTATTATGA
Found at i:9776512 original size:20 final size:20
Alignment explanation
Indices: 9776489--9776534 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
9776479 TAGGGAGCTT
*
9776489 GCACTGGTATATGCAACTAG
1 GCACCGGTATATGCAACTAG
*
9776509 GCACCGGTATCTGCAACTAG
1 GCACCGGTATATGCAACTAG
9776529 GCACCG
1 GCACCG
9776535 TGAGGACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (20 bp):
GCACCGGTATATGCAACTAG
Found at i:9780610 original size:16 final size:16
Alignment explanation
Indices: 9780589--9780622 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
9780579 CAATTCAAGT
9780589 TTTTGTTGTCGAATTC
1 TTTTGTTGTCGAATTC
*
9780605 TTTTGTTTTCGAATTC
1 TTTTGTTGTCGAATTC
9780621 TT
1 TT
9780623 CTATTTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.15, T:0.62
Consensus pattern (16 bp):
TTTTGTTGTCGAATTC
Found at i:9786058 original size:29 final size:29
Alignment explanation
Indices: 9786021--9786112 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 29
9786011 AATATATATT
*
9786021 TTTTTTAATTTTAAAATATTTTT-ACATAC
1 TTTTTTAATTTTAAAATATTTTTAAAAT-C
**** * *
9786050 TTTTTTAATTTTTTTTTAATTTTAAAATT
1 TTTTTTAATTTTAAAATATTTTTAAAATC
*
9786079 TTTTTTAATTTTAAAATATTTTTAAAATA
1 TTTTTTAATTTTAAAATATTTTTAAAATC
9786108 TTTTT
1 TTTTT
9786113 AAAATACTTT
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
29 46 0.94
30 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTTTAATTTTAAAATATTTTTAAAATC
Found at i:9786072 original size:18 final size:18
Alignment explanation
Indices: 9786059--9786101 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 18
9786049 CTTTTTTAAT
9786059 TTTTTTTTAATTTTAAAA
1 TTTTTTTTAATTTTAAAA
9786077 TTTTTTTTAATTTTAAAA
1 TTTTTTTTAATTTTAAAA
9786095 TATTTTT
1 T-TTTTT
9786102 AAAATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTTTTAATTTTAAAA
Found at i:9786083 original size:11 final size:11
Alignment explanation
Indices: 9786069--9786154 Score: 58
Period size: 11 Copynumber: 8.2 Consensus size: 11
9786059 TTTTTTTTAA
9786069 TTTTAAAATTT
1 TTTTAAAATTT
*
9786080 TTTT-TAA--T
1 TTTTAAAATTT
*
9786088 -TTTAAAATAT
1 TTTTAAAATTT
*
9786098 TTTTAAAATAT
1 TTTTAAAATTT
**
9786109 TTTTAAAATAC
1 TTTTAAAATTT
9786120 TTTTAAAATACTT
1 TTTTAAAAT--TT
*
9786133 TTTT-TAA-TT
1 TTTTAAAATTT
9786142 TTTTAAAATTT
1 TTTTAAAATTT
9786153 TT
1 TT
9786155 AAAATAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
7 3 0.05
8 3 0.05
9 6 0.10
10 5 0.08
11 37 0.62
12 2 0.03
13 4 0.07
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:9791173 original size:13 final size:14
Alignment explanation
Indices: 9791141--9791177 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
9791131 GCCATACAAT
9791141 TTATGATATATGTA
1 TTATGATATATGTA
9791155 TGTATGATATATG-A
1 T-TATGATATATGTA
9791169 TTATGATAT
1 TTATGATAT
9791178 GCTTGTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.36
14 3 0.14
15 11 0.50
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
TTATGATATATGTA
Found at i:9791445 original size:20 final size:20
Alignment explanation
Indices: 9791422--9791466 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
9791412 GTTATGATTC
* *
9791422 GATATAATATGATATGTTAT
1 GATATAATATAATATGTTAA
* *
9791442 GATACATTATAATATGTTAA
1 GATATAATATAATATGTTAA
9791462 GATAT
1 GATAT
9791467 GGTCTATATG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.13, T:0.42
Consensus pattern (20 bp):
GATATAATATAATATGTTAA
Found at i:9793113 original size:24 final size:24
Alignment explanation
Indices: 9793077--9793148 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
9793067 GGATCTATGA
* *
9793077 TTGCATCTATATCAGAATTTGCAT
1 TTGCATCTGTATCTGAATTTGCAT
*
9793101 TTGCATTTGTATCTGAATTTG-AT
1 TTGCATCTGTATCTGAATTTGCAT
* *
9793124 TATGCATCTGAATCTGAATATGCAT
1 T-TGCATCTGTATCTGAATTTGCAT
9793149 ATGTATCCGA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
23 3 0.08
24 35 0.88
25 2 0.05
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.43
Consensus pattern (24 bp):
TTGCATCTGTATCTGAATTTGCAT
Found at i:9793132 original size:18 final size:18
Alignment explanation
Indices: 9793111--9793148 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
9793101 TTGCATTTGT
* *
9793111 ATCTGAATTTGATTATGC
1 ATCTGAATCTGAATATGC
9793129 ATCTGAATCTGAATATGC
1 ATCTGAATCTGAATATGC
9793147 AT
1 AT
9793149 ATGTATCCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (18 bp):
ATCTGAATCTGAATATGC
Found at i:9793163 original size:18 final size:18
Alignment explanation
Indices: 9793121--9793163 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
9793111 ATCTGAATTT
* *
9793121 GATTATGCATCTGAATCT
1 GATTATGCATATGAATCC
* *
9793139 GAATATGCATATGTATCC
1 GATTATGCATATGAATCC
9793157 GATTATG
1 GATTATG
9793164 AAATACACTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (18 bp):
GATTATGCATATGAATCC
Found at i:9797036 original size:18 final size:18
Alignment explanation
Indices: 9797013--9797049 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
9797003 GTCTGTAGCG
9797013 GATGGTATTTACATTTGT
1 GATGGTATTTACATTTGT
9797031 GATGGTATTTACATTTGT
1 GATGGTATTTACATTTGT
9797049 G
1 G
9797050 TTTGTTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.05, G:0.24, T:0.49
Consensus pattern (18 bp):
GATGGTATTTACATTTGT
Found at i:9799424 original size:16 final size:16
Alignment explanation
Indices: 9799403--9799438 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
9799393 TTTGGTTCGC
9799403 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9799419 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9799435 TGTA
1 TGTA
9799439 ATAGCTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:9799503 original size:44 final size:45
Alignment explanation
Indices: 9799419--9799509 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
9799409 GGATTAGAGG
* * *
9799419 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
9799464 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
9799508 TG
1 TG
9799510 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:9799695 original size:18 final size:17
Alignment explanation
Indices: 9799674--9799708 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9799664 TTATTATTAA
*
9799674 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9799692 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9799709 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9799848 original size:14 final size:15
Alignment explanation
Indices: 9799810--9799848 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
9799800 TTAATCATAT
*
9799810 TTAAACATATTTTTA
1 TTAAACATATTTTAA
9799825 TTAAACATATTTTAA
1 TTAAACATATTTTAA
9799840 TTAAA-ATAT
1 TTAAACATAT
9799849 ATAATTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (15 bp):
TTAAACATATTTTAA
Found at i:9799873 original size:156 final size:156
Alignment explanation
Indices: 9799561--9799875 Score: 569
Period size: 156 Copynumber: 2.0 Consensus size: 156
9799551 TAGAATACCC
9799561 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * *
9799626 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAA
9799691 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
9799717 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
9799782 TTATCAATAATAAATAATTTAATCATATTTAAACAT-ATTTTTATTAAACATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAA
9799846 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTT-ATAA
9799873 TTA
1 TTA
9799876 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
155 48 0.31
156 105 0.69
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (156 bp):
TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:9803810 original size:93 final size:93
Alignment explanation
Indices: 9803712--9803991 Score: 243
Period size: 93 Copynumber: 3.1 Consensus size: 93
9803702 TACAAATAAT
9803712 ATATATTAAAAGTCATTTAAGTTCATCAATTTGGTTATGAAAATTTATATTTTGATAACTGACCA
1 ATATATTAAAAGTCATTTAAGTTCATCAATTTGGTTATGAAAATTTATATTTTGATAACTGACCA
9803777 ACTTAACTTTTTTTAATACAATACTGCA
66 ACTTAACTTTTTTTAATACAATACTGCA
** * * * * * * * *
9803805 ATATATT-TGACT-TTTTGA-TT--TAAATTT--ATATG--TATTATATATTTATTAT-A-TTA-
1 ATATATTAAAAGTCATTTAAGTTCATCAATTTGGTTATGAAAATT-TATATTT-TGATAACTGAC
* * * * *
9803858 TAA-AT-A-TATTTTTAA-AAAATTACAAAT-AA
64 CAACTTAACTTTTTTTAATACAA-TAC---TGCA
9803887 TATATATTAAAAGTCATTTAAGTTCATCAATTTGGTTATGAAAATTTATATTTTGATAACTGACC
1 -ATATATTAAAAGTCATTTAAGTTCATCAATTTGGTTATGAAAATTTATATTTTGATAACTGACC
9803952 AACTTAACTTTTTTTAATACAATACTGCA
65 AACTTAACTTTTTTTAATACAATACTGCA
9803981 ATATATTAAAA
1 ATATATTAAAA
9803992 CCTTTCCCGA
Statistics
Matches: 133, Mismatches: 30, Indels: 48
0.63 0.14 0.23
Matches are distributed among these distances:
79 3 0.02
80 11 0.08
81 1 0.01
82 2 0.02
83 10 0.08
84 7 0.05
85 12 0.09
86 9 0.07
88 12 0.09
90 9 0.07
91 12 0.09
92 7 0.05
93 21 0.16
94 2 0.02
95 1 0.01
96 11 0.08
97 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.45
Consensus pattern (93 bp):
ATATATTAAAAGTCATTTAAGTTCATCAATTTGGTTATGAAAATTTATATTTTGATAACTGACCA
ACTTAACTTTTTTTAATACAATACTGCA
Found at i:9803912 original size:176 final size:176
Alignment explanation
Indices: 9803618--9803987 Score: 740
Period size: 176 Copynumber: 2.1 Consensus size: 176
9803608 AGTATAAAAA
9803618 ACAATACTGCAATATATTTGACTTTTTGATTTAAATTTATATGTATTATATATTTATTATATTAT
1 ACAATACTGCAATATATTTGACTTTTTGATTTAAATTTATATGTATTATATATTTATTATATTAT
9803683 AAATATATTTTTAAAAAATTACAAATAATATATATTAAAAGTCATTTAAGTTCATCAATTTGGTT
66 AAATATATTTTTAAAAAATTACAAATAATATATATTAAAAGTCATTTAAGTTCATCAATTTGGTT
9803748 ATGAAAATTTATATTTTGATAACTGACCAACTTAACTTTTTTTAAT
131 ATGAAAATTTATATTTTGATAACTGACCAACTTAACTTTTTTTAAT
9803794 ACAATACTGCAATATATTTGACTTTTTGATTTAAATTTATATGTATTATATATTTATTATATTAT
1 ACAATACTGCAATATATTTGACTTTTTGATTTAAATTTATATGTATTATATATTTATTATATTAT
9803859 AAATATATTTTTAAAAAATTACAAATAATATATATTAAAAGTCATTTAAGTTCATCAATTTGGTT
66 AAATATATTTTTAAAAAATTACAAATAATATATATTAAAAGTCATTTAAGTTCATCAATTTGGTT
9803924 ATGAAAATTTATATTTTGATAACTGACCAACTTAACTTTTTTTAAT
131 ATGAAAATTTATATTTTGATAACTGACCAACTTAACTTTTTTTAAT
9803970 ACAATACTGCAATATATT
1 ACAATACTGCAATATATT
9803988 AAAACCTTTC
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
176 194 1.00
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (176 bp):
ACAATACTGCAATATATTTGACTTTTTGATTTAAATTTATATGTATTATATATTTATTATATTAT
AAATATATTTTTAAAAAATTACAAATAATATATATTAAAAGTCATTTAAGTTCATCAATTTGGTT
ATGAAAATTTATATTTTGATAACTGACCAACTTAACTTTTTTTAAT
Found at i:9807140 original size:82 final size:82
Alignment explanation
Indices: 9807024--9807232 Score: 235
Period size: 82 Copynumber: 2.5 Consensus size: 82
9807014 ATATAACTTA
* * * * * *
9807024 CCTGATACAATACACCGACACAAAGACTGCTAGGCTC-AAGACCTGA-TACAACACATCGGCATG
1 CCTGATATAATACACCGACACGAAGCCTACTAGGCTCAAAG-CCT-ATTACAACACACCGGCACG
9807087 AAACCTGCTAGACACAAAG
64 AAACCTGCTAGACACAAAG
***
9807106 CCTGATATAATACACC-AGCACGAAGCCTACTAGGCTCAAAGCCTATTACGGTACACCGGCACGA
1 CCTGATATAATACACCGA-CACGAAGCCTACTAGGCTCAAAGCCTATTACAACACACCGGCACGA
** *
9807170 AGTCTGCTAGGCACAAAG
65 AACCTGCTAGACACAAAG
* * *
9807188 CCTGATATAATACACTGACACGAAGCCTACTAAGCACAAAGCCTA
1 CCTGATATAATACACCGACACGAAGCCTACTAGGCTCAAAGCCTA
9807233 ATAATATACA
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
81 2 0.02
82 102 0.94
83 4 0.04
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (82 bp):
CCTGATATAATACACCGACACGAAGCCTACTAGGCTCAAAGCCTATTACAACACACCGGCACGAA
ACCTGCTAGACACAAAG
Found at i:9807146 original size:41 final size:41
Alignment explanation
Indices: 9807024--9807256 Score: 167
Period size: 41 Copynumber: 5.7 Consensus size: 41
9807014 ATATAACTTA
* * * *
9807024 CCTGATACAATACACC-GACACAAAGACTGCTAGGCTC-AAG
1 CCTGATATAATACACCAG-CACGAAGCCTGCTAGGCACAAAG
* * * * * * *
9807064 ACCTGATACAACACATCGGCATGAAACCTGCTAGACACAAAG
1 -CCTGATATAATACACCAGCACGAAGCCTGCTAGGCACAAAG
* *
9807106 CCTGATATAATACACCAGCACGAAGCCTACTAGGCTCAAAG
1 CCTGATATAATACACCAGCACGAAGCCTGCTAGGCACAAAG
* * *
9807147 CCT-AT-TACGGTACACCGGCACGAAGTCTGCTAGGCACAAAG
1 CCTGATATA--ATACACCAGCACGAAGCCTGCTAGGCACAAAG
* * *
9807188 CCTGATATAATACA-CTGACACGAAGCCTACTAAGCACAAAG
1 CCTGATATAATACACCAG-CACGAAGCCTGCTAGGCACAAAG
*
9807229 CCT-A-ATAATATA-CATTGCACGAAGCCTG
1 CCTGATATAATACACCA--GCACGAAGCCTG
9807257 TTGGATTCAA
Statistics
Matches: 153, Mismatches: 30, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
39 10 0.07
40 15 0.10
41 120 0.78
42 6 0.04
43 2 0.01
ACGTcount: A:0.37, C:0.28, G:0.18, T:0.17
Consensus pattern (41 bp):
CCTGATATAATACACCAGCACGAAGCCTGCTAGGCACAAAG
Found at i:9808107 original size:16 final size:14
Alignment explanation
Indices: 9808086--9808124 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
9808076 ATGATAATGA
9808086 TTTATTTTTATTTTAC
1 TTTATTTTTA--TTAC
9808102 TTTATTTTTATTAC
1 TTTATTTTTATTAC
9808116 -TTATTTTTA
1 TTTATTTTTA
9808125 ATTATTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.39
14 4 0.17
16 10 0.43
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTTTTATTAC
Found at i:9812654 original size:29 final size:29
Alignment explanation
Indices: 9812567--9812655 Score: 72
Period size: 29 Copynumber: 3.0 Consensus size: 29
9812557 ATATTTAGAA
* *
9812567 TTTTTTATTTAAGT-TACTGAACTATTCGAAA
1 TTTTTTATTTAAGTCT-CTAAACTATT--AAT
* * *** *
9812598 GTTTTTATTTAAGTCTTTAGGTTGTTAAT
1 TTTTTTATTTAAGTCTCTAAACTATTAAT
9812627 TTTTTTATTTAAGTCTCTAAACTATTAAT
1 TTTTTTATTTAAGTCTCTAAACTATTAAT
9812656 AAGTTTGACT
Statistics
Matches: 43, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
29 25 0.58
31 17 0.40
32 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.54
Consensus pattern (29 bp):
TTTTTTATTTAAGTCTCTAAACTATTAAT
Found at i:9814495 original size:17 final size:17
Alignment explanation
Indices: 9814473--9814512 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
9814463 TATTTTTATT
9814473 TTTTATCTCCCCTTCTC
1 TTTTATCTCCCCTTCTC
*
9814490 TTTTATCTCCCCTTTTC
1 TTTTATCTCCCCTTCTC
9814507 TTTTAT
1 TTTTAT
9814513 TATTCTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.07, C:0.33, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTATCTCCCCTTCTC
Found at i:9823223 original size:21 final size:21
Alignment explanation
Indices: 9823193--9823240 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 21
9823183 AACCCAATAA
9823193 GCAAGAAAAATGAACATCAATG
1 GCAA-AAAAATGAACATCAATG
9823215 GCAAAAAAATGAACATCAATG
1 GCAAAAAAATGAACATCAATG
9823236 GCAAA
1 GCAAA
9823241 CACAATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (21 bp):
GCAAAAAAATGAACATCAATG
Found at i:9823761 original size:22 final size:23
Alignment explanation
Indices: 9823735--9823779 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
9823725 CATGATAGTG
9823735 GTATCACGACACCCAT-ACAATA
1 GTATCACGACACCCATGACAATA
** *
9823757 GTATCGTGAGACCCATGACAATA
1 GTATCACGACACCCATGACAATA
9823780 TGGAATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.38, C:0.27, G:0.16, T:0.20
Consensus pattern (23 bp):
GTATCACGACACCCATGACAATA
Found at i:9831435 original size:15 final size:16
Alignment explanation
Indices: 9831405--9831437 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
9831395 GGGGTAACAT
9831405 ATAAATTCTATTTTAA
1 ATAAATTCTATTTTAA
*
9831421 ATAAATT-TGTTTTAA
1 ATAAATTCTATTTTAA
9831436 AT
1 AT
9831438 TTTAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (16 bp):
ATAAATTCTATTTTAA
Found at i:9863905 original size:47 final size:46
Alignment explanation
Indices: 9863844--9864394 Score: 762
Period size: 47 Copynumber: 11.6 Consensus size: 46
9863834 TGGATAATTG
* * *
9863844 TGATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGA
1 TGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
9863890 TG-TGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGA
1 TGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
9863935 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TG-ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
*
9863984 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGA
1 TG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
9864031 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TG-ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
9864080 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
9864127 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TG-ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
9864176 TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCTATGTGA
1 TG-ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
*
9864225 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGA
1 TG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
9864272 TGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGA
1 TG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
* * * * * * *
9864319 TGAATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCAACGTGA
1 TG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
9864366 TGGATGTGAAAGTGTATAAATGTGATAAG
1 T-GATGTGAAAGTGTATATATGTGATAAG
9864395 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 30, Indels: 17
0.91 0.06 0.03
Matches are distributed among these distances:
45 41 0.09
46 2 0.00
47 238 0.51
48 1 0.00
49 184 0.39
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (46 bp):
TGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
Found at i:9864019 original size:96 final size:96
Alignment explanation
Indices: 9863846--9864394 Score: 889
Period size: 96 Copynumber: 5.8 Consensus size: 96
9863836 GATAATTGTG
*
9863846 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATG--TGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
9863907 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
9863938 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
9864003 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
9864034 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
9864099 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
9864130 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
9864195 ATATGTGATAAGGCCGAATGGCCTATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCGATGTGATGA
*
9864228 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
9864291 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
* * * * * * * * *
9864322 ATGTGAAAATG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
9864385 ATGTGATAAG
66 ATGTGATAAG
9864395 TCCCGAAGGG
Statistics
Matches: 433, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
92 5 0.01
93 2 0.00
94 133 0.31
96 247 0.57
98 46 0.11
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGA
Found at i:9866678 original size:39 final size:40
Alignment explanation
Indices: 9866590--9866983 Score: 554
Period size: 39 Copynumber: 10.1 Consensus size: 40
9866580 AGGTCTCGAC
9866590 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
9866629 GATGTA-CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
9866667 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
9866707 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
9866746 GATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
9866785 GATGTAT-CGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
9866824 GATGTATCCGGACTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
9866863 GATGTATCTGGGCTAAGT-TCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
9866902 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
9866942 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
9866982 GA
1 GA
9866984 CGTGTATTCG
Statistics
Matches: 322, Mismatches: 24, Indels: 17
0.89 0.07 0.05
Matches are distributed among these distances:
38 28 0.09
39 203 0.63
40 89 0.28
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:9869657 original size:49 final size:47
Alignment explanation
Indices: 9869528--9870172 Score: 1042
Period size: 47 Copynumber: 13.6 Consensus size: 47
9869518 GATAATTGTG
* *
9869528 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCG-TGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9869574 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9869621 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9869670 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9869719 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9869766 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9869813 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9869862 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
9869908 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9869957 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCTATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9870006 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9870053 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
9870100 ATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
9870147 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
9870173 TCCCGAAGGG
Statistics
Matches: 567, Mismatches: 24, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
46 55 0.10
47 277 0.49
48 25 0.04
49 210 0.37
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:9869905 original size:287 final size:287
Alignment explanation
Indices: 9869528--9870172 Score: 1138
Period size: 287 Copynumber: 2.3 Consensus size: 287
9869518 GATAATTGTG
9869528 ATGTG-AATGTATATATATGTGATAAGGCCTAATGGCCG-TGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
9869591 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
9869656 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
9869721 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
196 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
9869786 GATAAGGCCTAATGGCCGATGTGATGA
261 GATAAGGCCTAATGGCCGATGTGATGA
9869813 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
9869878 ATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
9869942 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCTATGTGATGAA
130 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
9870007 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
195 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
*
9870072 TGATGAGGCCTAATGGCCGATGTGATGA
260 TGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
9870100 ATGTGAAAATG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTG-AAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
9870163 ATGTGATAAG
65 ATGTGATAAG
9870173 TCCCGAAGGG
Statistics
Matches: 345, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
285 59 0.17
286 2 0.01
287 236 0.68
288 48 0.14
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (287 bp):
ATGTGAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATGGCCGATGTGATGA
Found at i:9883916 original size:13 final size:14
Alignment explanation
Indices: 9883891--9883919 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9883881 ATAATAAGAA
9883891 AATAAATAAACAAG
1 AATAAATAAACAAG
9883905 AATAAA-AAACAAG
1 AATAAATAAACAAG
9883918 AA
1 AA
9883920 ATCAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.76, C:0.07, G:0.07, T:0.10
Consensus pattern (14 bp):
AATAAATAAACAAG
Found at i:9884681 original size:59 final size:59
Alignment explanation
Indices: 9884584--9884708 Score: 232
Period size: 59 Copynumber: 2.1 Consensus size: 59
9884574 TGTCCATTTA
9884584 TGGACTTAGAATGGTCATTGACCTTAACCCTAGGTCAATTGACGTTCTCAAGCTTAAATT
1 TGGA-TTAGAATGGTCATTGACCTTAACCCTAGGTCAATTGACGTTCTCAAGCTTAAATT
*
9884644 TGGATTAGAATGGTCATTGACCTTAACCCTAGGTCAATTGACGTTCTCGAGCTTAAATT
1 TGGATTAGAATGGTCATTGACCTTAACCCTAGGTCAATTGACGTTCTCAAGCTTAAATT
9884703 TGGATT
1 TGGATT
9884709 GTGCAAACCA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 60 0.94
60 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (59 bp):
TGGATTAGAATGGTCATTGACCTTAACCCTAGGTCAATTGACGTTCTCAAGCTTAAATT
Found at i:9887534 original size:41 final size:41
Alignment explanation
Indices: 9887326--9887534 Score: 274
Period size: 41 Copynumber: 5.1 Consensus size: 41
9887316 AAGTGTAACC
9887326 GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAATA
1 GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAATA
* *** * ** * *
9887367 AGGGCGTATAAGTGCAATTTAGCAGTACCAAAGTACAAACA
1 GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAATA
** *
9887408 GGAACACGTAAGTGCAATTCAGGGGTACCAAAGTACAAATA
1 GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAATA
* * *
9887449 GGGGCACATAAATGCAATTCAGGGGTACAGAAGTACAAATA
1 GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAATA
*
9887490 GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAACA
1 GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAATA
9887531 GGGG
1 GGGG
9887535 ATAATTAACA
Statistics
Matches: 139, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 139 1.00
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.17
Consensus pattern (41 bp):
GGGGCACGTAAGTGCAATTCAGGGGTACCGAAGTACAAATA
Found at i:9887739 original size:17 final size:17
Alignment explanation
Indices: 9887719--9887756 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
9887709 AATTAAATAT
9887719 TTCAA-TCAATCTCAAAA
1 TTCAATTCAATC-CAAAA
*
9887736 TTCAATTCAATCCATAA
1 TTCAATTCAATCCAAAA
9887753 TTCA
1 TTCA
9887757 CATTTATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (17 bp):
TTCAATTCAATCCAAAA
Found at i:9899972 original size:32 final size:32
Alignment explanation
Indices: 9899932--9900000 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
9899922 CGTCCCTGCT
* *
9899932 TTGT-AAGGATTTTGAGTATTGGGGTTCATAC
1 TTGTCAAGGATGTTGAGAATTGGGGTTCATAC
*
9899963 TTGTCAAGGATGTTGAGAATTGGGGTTCATAT
1 TTGTCAAGGATGTTGAGAATTGGGGTTCATAC
9899995 TTGTCA
1 TTGTCA
9900001 CTCATTATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 4 0.12
32 30 0.88
ACGTcount: A:0.23, C:0.07, G:0.29, T:0.41
Consensus pattern (32 bp):
TTGTCAAGGATGTTGAGAATTGGGGTTCATAC
Found at i:9907816 original size:38 final size:38
Alignment explanation
Indices: 9907765--9907840 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
9907755 CGCTCCAGAG
9907765 TTAGCTTGCGATGTGGAGTACATACCATGGTTTAGGGT
1 TTAGCTTGCGATGTGGAGTACATACCATGGTTTAGGGT
9907803 TTAGCTTGCGATGTGGAGTACATACCATGGTTTAGGGT
1 TTAGCTTGCGATGTGGAGTACATACCATGGTTTAGGGT
9907841 CCATGGCAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (38 bp):
TTAGCTTGCGATGTGGAGTACATACCATGGTTTAGGGT
Found at i:9909321 original size:138 final size:136
Alignment explanation
Indices: 9909043--9909393 Score: 535
Period size: 138 Copynumber: 2.6 Consensus size: 136
9909033 ACATGGATAA
9909043 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT-A-A
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CGAATTTATTAATA
*
9909106 TAAAAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATAAAAATTAATATTATTTCGGAA
65 TAAAAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTATTTCGGAA
*
9909171 TGAATAT
130 AGAATAT
* *
9909178 AATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTTATCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CGAATTTATTAATA
** * **
9909243 TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTTGA
65 TAAA-AATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTATTTCGGA
9909308 AAGAATAT
129 AAGAATAT
* *
9909316 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATGTTTTACTGAATTTGTTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTAC-GAATTTATTAATA
*
9909381 TAAATAGTTATAT
65 TAAA-AATTATAT
9909394 CACTACACCA
Statistics
Matches: 196, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
135 58 0.30
136 1 0.01
137 6 0.03
138 131 0.67
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (136 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACGAATTTATTAATAT
AAAAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTATTTCGGAAA
GAATAT
Found at i:9909643 original size:41 final size:40
Alignment explanation
Indices: 9909582--9909820 Score: 259
Period size: 41 Copynumber: 5.8 Consensus size: 40
9909572 GGGATTTTGT
9909582 GGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGC
1 GGCG-TTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGC
* *
9909623 GGCGTTTTTTGTAAAA-CGCCGCTAATGCTTA-GGTATTTAGC
1 GGCG-TTTTT-AAAAAGCGCCGCTAATGCTCAGGGT-TTTAGC
* * *
9909664 GGCGTTTTTTAAAATGCGCCACTAATGCTTAGGGTTTTAGC
1 GGCG-TTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGC
* * *
9909705 GGCGTTTTTTAAAAAGTGCCACTAATGATC-GGGTCTTTAGC
1 GGCG-TTTTTAAAAAGCGCCGCTAATGCTCAGGGT-TTTAGC
* * * *
9909746 GACGTTTTTGAAAAAGTGCCGCTAATGCTCAGAGTATTAGC
1 GGCGTTTTT-AAAAAGCGCCGCTAATGCTCAGGGTTTTAGC
*
9909787 GGCGTTTTTAAAAAAGCGCCGCTAATGTTCAGGG
1 GGCGTTTTT-AAAAAGCGCCGCTAATGCTCAGGG
9909821 CAATAGTGGC
Statistics
Matches: 172, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
40 15 0.09
41 147 0.85
42 10 0.06
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (40 bp):
GGCGTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGC
Found at i:9909730 original size:82 final size:82
Alignment explanation
Indices: 9909582--9909819 Score: 307
Period size: 82 Copynumber: 2.9 Consensus size: 82
9909572 GGGATTTTGT
*
9909582 GGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTTGTAAAA-CGCCGCT
1 GGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTT-AAAAAGCGCCGCT
* *
9909646 AATGCTTAGGTATTTAGC
65 AATGATCAGGTATTTAGC
* * * * *
9909664 GGCGTTTTTTAAAATGCGCCACTAATGCTTAGGGTTTTAGCGGCGTTTTTTAAAAAGTGCCACTA
1 GGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTA
* *
9909729 ATGATCGGGTCTTTAGC
66 ATGATCAGGTATTTAGC
* * * * * *
9909746 GACGTTTTTGAAAAAGTGCCGCTAATGCTCAGAGTATTAGCGGCGTTTTTAAAAAAGCGCCGCTA
1 GGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTA
*
9909811 ATGTTCAGG
66 ATGATCAGG
9909820 GCAATAGTGG
Statistics
Matches: 132, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 4 0.03
82 128 0.97
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (82 bp):
GGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTA
ATGATCAGGTATTTAGC
Found at i:9909806 original size:123 final size:123
Alignment explanation
Indices: 9909582--9909813 Score: 326
Period size: 123 Copynumber: 1.9 Consensus size: 123
9909572 GGGATTTTGT
* * * *
9909582 GGCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTTGTAAAACGCCGCTA
1 GGCGTTTTTTAAAAAGCGCCACTAATGATCAGGGTTTTAGCGACGTTTTTTGAAAAACGCCGCTA
* * *
9909647 ATGCTTAGGTATTTAGCGGCGTTTTTTAAAATGCGCCACTAATGCTTAGGGTTTTAGC
66 ATGCTCAGGTATTTAGCGGCGTTTTTAAAAAAGCGCCACTAATGCTTAGGGTTTTAGC
* *
9909705 GGCGTTTTTTAAAAAGTGCCACTAATGATC-GGGTCTTTAGCGACG-TTTTTGAAAAAGTGCCGC
1 GGCGTTTTTTAAAAAGCGCCACTAATGATCAGGGT-TTTAGCGACGTTTTTTGAAAAA-CGCCGC
*
9909768 TAATGCTCAGAGTA-TTAGCGGCGTTTTTAAAAAAGCGCCGCTAATG
64 TAATGCTCAG-GTATTTAGCGGCGTTTTTAAAAAAGCGCCACTAATG
9909814 TTCAGGGCAA
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
122 14 0.15
123 79 0.82
124 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (123 bp):
GGCGTTTTTTAAAAAGCGCCACTAATGATCAGGGTTTTAGCGACGTTTTTTGAAAAACGCCGCTA
ATGCTCAGGTATTTAGCGGCGTTTTTAAAAAAGCGCCACTAATGCTTAGGGTTTTAGC
Found at i:9910720 original size:7 final size:8
Alignment explanation
Indices: 9910694--9910719 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
9910684 TTACTTGTCA
9910694 TTTCTGAT
1 TTTCTGAT
9910702 TTTCTGAT
1 TTTCTGAT
9910710 TTTCTGAT
1 TTTCTGAT
9910718 TT
1 TT
9910720 CAGTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65
Consensus pattern (8 bp):
TTTCTGAT
Found at i:9912005 original size:20 final size:21
Alignment explanation
Indices: 9911969--9912008 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9911959 ATATATCTCA
*
9911969 TTTTAACATATATAAAATAAT
1 TTTTAACAAATATAAAATAAT
9911990 TTTTAACAAATA-AAAATAA
1 TTTTAACAAATATAAAATAA
9912009 ATAAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
TTTTAACAAATATAAAATAAT
Found at i:9913013 original size:16 final size:16
Alignment explanation
Indices: 9912992--9913022 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9912982 TGTAACTTAT
9912992 CTGATGTTTACAATAA
1 CTGATGTTTACAATAA
9913008 CTGATGTTTACAATA
1 CTGATGTTTACAATA
9913023 GTTTGGGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (16 bp):
CTGATGTTTACAATAA
Found at i:9914032 original size:18 final size:19
Alignment explanation
Indices: 9913997--9914034 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
9913987 AATAAAACAT
* *
9913997 AATATAATATTTATATAAA
1 AATATAATATTAAAATAAA
9914016 AATA-AATATTAAAATAAA
1 AATATAATATTAAAATAAA
9914034 A
1 A
9914035 TTTTTTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AATATAATATTAAAATAAA
Found at i:9914149 original size:44 final size:43
Alignment explanation
Indices: 9914097--9914323 Score: 215
Period size: 43 Copynumber: 5.3 Consensus size: 43
9914087 GCTTGTTTTA
* * * *
9914097 TAGCGGCGTTTGTGGCAAAAAGTGTCACTAAAGATCATGACCTT
1 TAGCGGCGTTTGTGG-AAAAAGCGCCGCTAAAGATCATGATCTT
* * * * **
9914141 TAGCGGCGTCTGTGATAAAAAGCACCGCTAAAGCTTGTGATCTT
1 TAGCGGCGTTTGTG-GAAAAAGCGCCGCTAAAGATCATGATCTT
* * * *
9914185 TAGCGGCGTTT-TTGTAAAAGCGCCGCTAAAGGTCATGTTCTT
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCATGATCTT
* * * * *
9914227 TAGCGGCGTTTTTTGTAAAGGCGCCGCTAAAGTTCATGATCTT
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCATGATCTT
* * *
9914270 TAGCGGCGTTTGTGGCAAAAGTGCCGCTAAAGA-CTGTGATCTT
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATC-ATGATCTT
9914313 TAGCGGCGTTT
1 TAGCGGCGTTT
9914324 TTTTATATAA
Statistics
Matches: 151, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
42 34 0.23
43 74 0.49
44 43 0.28
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCATGATCTT
Found at i:9914227 original size:42 final size:42
Alignment explanation
Indices: 9914048--9914325 Score: 206
Period size: 43 Copynumber: 6.5 Consensus size: 42
9914038 TTTAAATGTT
* *
9914048 ATGTT-TTTAGCGGCGTTTTTGTGAGAAGCGACGCTAAAGG-C
1 ATGTTCTTTAGCGGCGTTTTTGT-AAAAGCGCCGCTAAAGGTC
* * * * * * *
9914089 TTGTT-TTATAGCGGCGTTTGTGGCAAAAAGTGTCACTAAAGATC
1 ATGTTCTT-TAGCGGCGTTT-TTG-TAAAAGCGCCGCTAAAGGTC
** * * * * *
9914133 ATGACCTTTAGCGGCGTCTGTGATAAAAAGCACCGCTAAAGCTT
1 ATGTTCTTTAGCGGCGTTTTTG-T-AAAAGCGCCGCTAAAGGTC
* *
9914177 GTGATCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAAAGGTC
1 ATGTTCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAAAGGTC
* *
9914219 ATGTTCTTTAGCGGCGTTTTTTGTAAAGGCGCCGCTAAAGTTC
1 ATGTTCTTTAGCGGCG-TTTTTGTAAAAGCGCCGCTAAAGGTC
* * * * *
9914262 ATGATCTTTAGCGGCGTTTGTGGCAAAAGTGCCGCTAAA-GAC
1 ATGTTCTTTAGCGGCGTTT-TTGTAAAAGCGCCGCTAAAGGTC
9914304 -TGTGATCTTTAGCGGCGTTTTT
1 ATGT--TCTTTAGCGGCGTTTTT
9914326 TTATATAAAC
Statistics
Matches: 185, Mismatches: 42, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
41 8 0.04
42 46 0.25
43 85 0.46
44 44 0.24
45 2 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
ATGTTCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAAAGGTC
Found at i:9914322 original size:86 final size:88
Alignment explanation
Indices: 9914097--9914345 Score: 255
Period size: 86 Copynumber: 2.9 Consensus size: 88
9914087 GCTTGTTTTA
* * * * * *
9914097 TAGCGGCGTTTGTGGCAAAAAGTGTCACTAAAGA-TCATGACCTTTAGCGGCG-TCTGTGATAAA
1 TAGCGGCGTTTGTGGC-AAAAGTGCCGCTAAAGACT-GTGATCTTTAGCGGCGTTTTTTGATAAA
*
9914160 AAGCACCGCTAAAGCTTGTGATCTT
64 AAGCACCGCTAAAGCTTATGATCTT
* * * *
9914185 TAGCGGCGTTT-TTGTAAAAGCGCCGCTAAAGGTCATGT--TCTTTAGCGGCGTTTTTTG-T-AA
1 TAGCGGCGTTTGTGGCAAAAGTGCCGCTAAA-GAC-TGTGATCTTTAGCGGCGTTTTTTGATAAA
* *
9914245 AGGCGCCGCTAAAG-TTCATGATCTT
64 AAGCACCGCTAAAGCTT-ATGATCTT
* *
9914270 TAGCGGCGTTTGTGGCAAAAGTGCCGCTAAAGACTGTGATCTTTAGCGGCGTTTTTTTATATAAA
1 TAGCGGCGTTTGTGGCAAAAGTGCCGCTAAAGACTGTGATCTTTAGCGGCGTTTTTTGATAAAAA
9914335 -CACCGCTAAAG
66 GCACCGCTAAAG
9914346 TTAGCGACGC
Statistics
Matches: 130, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
84 5 0.04
85 34 0.26
86 58 0.45
87 18 0.14
88 14 0.11
89 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (88 bp):
TAGCGGCGTTTGTGGCAAAAGTGCCGCTAAAGACTGTGATCTTTAGCGGCGTTTTTTGATAAAAA
GCACCGCTAAAGCTTATGATCTT
Found at i:9914326 original size:129 final size:130
Alignment explanation
Indices: 9914053--9914325 Score: 331
Period size: 129 Copynumber: 2.1 Consensus size: 130
9914043 ATGTTATGTT
* *
9914053 TTTAGCGGCGTTTTTGTGAGAAGCGACGCTAAAGGCTTGTTTTATAGCGGCGTTTGTGGCAAAAA
1 TTTAGCGGCGTTTTTGTGAAAAGCGACGCTAAAGGCATGTTTTATAGCGGCGTTTGTGGCAAAAA
* * *
9914118 GTGTCACTAAAGATCATGACCTTTAGCGGCGTCTGTGATAAAAAGCACCGCTAAAGCTTGTGATC
66 GCGCCACTAAAGATCATGACCTTTAGCGGCGTCTGTGAGAAAAAGCACCGCTAAAGCTTGTGATC
* * * *
9914183 TTTAGCGGCGTTTTTGT-AAAAGCGCCGCTAAAGGTCATGTTCTT-TAGCGGCGTTTTTTG-TAA
1 TTTAGCGGCGTTTTTGTGAAAAGCGACGCTAAAGG-CATGTT-TTATAGCGGCGTTTGTGGCAAA
* * * * * * **
9914245 AGGCGCCGCTAAAGTTCATGATCTTTAGCGGCGTTTGTG-GCAAAAGTGCCGCTAAAGAC-TGTG
64 AAGCGCCACTAAAGATCATGACCTTTAGCGGCGTCTGTGAGAAAAAGCACCGCTAAAG-CTTGTG
9914308 ATC
128 ATC
9914311 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
9914326 TTATATAAAC
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
128 36 0.29
129 50 0.41
130 35 0.28
131 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (130 bp):
TTTAGCGGCGTTTTTGTGAAAAGCGACGCTAAAGGCATGTTTTATAGCGGCGTTTGTGGCAAAAA
GCGCCACTAAAGATCATGACCTTTAGCGGCGTCTGTGAGAAAAAGCACCGCTAAAGCTTGTGATC
Found at i:9914781 original size:75 final size:75
Alignment explanation
Indices: 9914654--9914800 Score: 235
Period size: 75 Copynumber: 2.0 Consensus size: 75
9914644 ATGAAAATTA
*
9914654 ATATTCTTTTAGAAAGAATATAATTCATTTTTCTAACTTTCCTTTTGTCTTCTCTATTAAT-AAG
1 ATATTCTTTTAGAAAGAATATAATTCATTTTTCTAACTTTCCTTTTGCCTTCTCTATTAATAAAG
9914718 GAAATAATGCT
66 G-AATAATGCT
* *
9914729 ATATTCTTTTGGAAAGAATATAATTCCTTTTTCTAACTTTCCATTTT-CCTTCTCTATTAATAAA
1 ATATTCTTTTAGAAAGAATATAATTCATTTTTCTAACTTTCC-TTTTGCCTTCTCTATTAATAAA
9914793 GGAATAAT
65 GGAATAAT
9914801 CTTGGTTTTC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
75 59 0.88
76 8 0.12
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTAGAAAGAATATAATTCATTTTTCTAACTTTCCTTTTGCCTTCTCTATTAATAAAG
GAATAATGCT
Found at i:9915373 original size:17 final size:17
Alignment explanation
Indices: 9915351--9915383 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9915341 ATGAATGAAA
9915351 AAATGTTAG-GGCAATTG
1 AAATGTT-GTGGCAATTG
9915368 AAATGTTGTGGCAATT
1 AAATGTTGTGGCAATT
9915384 CTCAAAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (17 bp):
AAATGTTGTGGCAATTG
Found at i:9918418 original size:30 final size:30
Alignment explanation
Indices: 9918367--9918435 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
9918357 ATTGCATACG
* * * *
9918367 AAAACGGATGGCTTCGGCTATC-GATCTATC
1 AAAAGGGATAGCTTCGACTATCAAAT-TATC
*
9918397 AAAAGGGATAGCTTCGACTATCAAATTATG
1 AAAAGGGATAGCTTCGACTATCAAATTATC
9918427 AAAAGGGAT
1 AAAAGGGAT
9918436 GGCGACGACA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 31 0.94
31 2 0.06
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (30 bp):
AAAAGGGATAGCTTCGACTATCAAATTATC
Found at i:9918492 original size:30 final size:30
Alignment explanation
Indices: 9918397--9918493 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
9918387 TCGATCTATC
* ** *
9918397 AAAAGGGATAGCTTCGACTATCAAATTATG
1 AAAAGGGATGGCAACGACCATCAAATTATG
* * *
9918427 AAAAGGGATGGCGACGA-CACTCGAATAATG
1 AAAAGGGATGGCAACGACCA-TCAAATTATG
* *
9918457 TAAAGGGATGGTAACGACCATCAAATTATG
1 AAAAGGGATGGCAACGACCATCAAATTATG
9918487 AAAAGGG
1 AAAAGGG
9918494 TGTGTCAACC
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
29 1 0.02
30 50 0.94
31 2 0.04
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.20
Consensus pattern (30 bp):
AAAAGGGATGGCAACGACCATCAAATTATG
Found at i:9932564 original size:50 final size:50
Alignment explanation
Indices: 9932505--9932697 Score: 296
Period size: 50 Copynumber: 3.8 Consensus size: 50
9932495 ATTTGGGTAA
*
9932505 AGAGGTCCCATGTAAGACCATGTCTGGAACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
9932555 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * *
9932605 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
9932655 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
9932698 TGTTATTATC
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 96 0.74
51 34 0.26
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:9942555 original size:40 final size:41
Alignment explanation
Indices: 9942479--9942556 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 41
9942469 TTTTCTAAAA
*
9942479 ATATTTAAATATTAATATAAAATATTATAATGTTAACATTC
1 ATATTTAAATATTAATATAAAATAATATAATGTTAACATTC
* ** * *
9942520 ATATTT-AATATTTATATTTAATAATCTAATTTTAACA
1 ATATTTAAATATTAATATAAAATAATATAATGTTAACA
9942557 ATAAATGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
40 25 0.81
41 6 0.19
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.47
Consensus pattern (41 bp):
ATATTTAAATATTAATATAAAATAATATAATGTTAACATTC
Found at i:9942704 original size:25 final size:25
Alignment explanation
Indices: 9942676--9942733 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
9942666 TAATATATAA
* ** *
9942676 TTAAAAATATATTTATATTAATATT
1 TTAAAAATAAATACATATTAAAATT
9942701 TTAAAAATAAATACATATTAAAATT
1 TTAAAAATAAATACATATTAAAATT
9942726 TTAAAAAT
1 TTAAAAAT
9942734 TTTAATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
TTAAAAATAAATACATATTAAAATT
Found at i:9942956 original size:18 final size:17
Alignment explanation
Indices: 9942916--9942963 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
9942906 TATTATTAAG
*
9942916 TTTA-TATAAGATATTA
1 TTTATTATAAAATATTA
9942932 TTTATTATAAAATATTA
1 TTTATTATAAAATATTA
9942949 TCTTATTATAAAATA
1 T-TTATTATAAAATA
9942964 AATTTTGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 4 0.14
17 12 0.41
18 13 0.45
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TTTATTATAAAATATTA
Found at i:9947905 original size:17 final size:17
Alignment explanation
Indices: 9947874--9947907 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9947864 CCATCTGGTG
**
9947874 AACTCTAGGTTTTGGCA
1 AACTCTAGGGATTGGCA
9947891 AACTCTAGGGATTGGCA
1 AACTCTAGGGATTGGCA
9947908 GACTTTTCTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (17 bp):
AACTCTAGGGATTGGCA
Found at i:9957927 original size:29 final size:30
Alignment explanation
Indices: 9957893--9957956 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
9957883 GTTGAATGTG
*
9957893 TAATTTTAT-TCATG-AATTTTGATTTTATA
1 TAATTTTATAT-ATGAAATTTTGATTTGATA
*
9957922 TAATTTTATATATGAAATTTTGATTTGATT
1 TAATTTTATATATGAAATTTTGATTTGATA
9957952 TAATT
1 TAATT
9957957 CTCACAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 12 0.39
30 19 0.61
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (30 bp):
TAATTTTATATATGAAATTTTGATTTGATA
Found at i:9960456 original size:21 final size:22
Alignment explanation
Indices: 9960432--9960488 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
9960422 ACATAGGTTG
*
9960432 CAAGTCTCGAGACTTAGGC-AA
1 CAAGTCTCGAGACTTAGCCTAA
* * *
9960453 CAAGTATCAAGACTTTGCCTAA
1 CAAGTCTCGAGACTTAGCCTAA
9960475 -AAGTCTCGAGACTT
1 CAAGTCTCGAGACTT
9960489 CGACTATAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 27 0.93
22 2 0.07
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (22 bp):
CAAGTCTCGAGACTTAGCCTAA
Found at i:9960499 original size:21 final size:21
Alignment explanation
Indices: 9960433--9960501 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
9960423 CATAGGTTGC
*
9960433 AAGTCTCGAGACTTAGGC-AA
1 AAGTCTCGAGACTTAGACTAA
* * * *
9960453 CAAGTATCAAGACTTTGCCTAA
1 -AAGTCTCGAGACTTAGACTAA
* *
9960475 AAGTCTCGAGACTTCGACTAT
1 AAGTCTCGAGACTTAGACTAA
9960496 AAGTCT
1 AAGTCT
9960502 TTATACTTAG
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
21 36 0.95
22 2 0.05
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (21 bp):
AAGTCTCGAGACTTAGACTAA
Found at i:9963029 original size:20 final size:21
Alignment explanation
Indices: 9963006--9963061 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 21
9962996 TTAAAATTAA
*
9963006 TAAAACTTGATTAA-TTAAAT
1 TAAAACTTAATTAACTTAAAT
*
9963026 TAAACCTTAATTAACTT-AAT
1 TAAAACTTAATTAACTTAAAT
9963046 GCT-AAACTTAATTAAC
1 --TAAAACTTAATTAAC
9963062 CAAATGTTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 15 0.50
21 14 0.47
22 1 0.03
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (21 bp):
TAAAACTTAATTAACTTAAAT
Found at i:9963067 original size:21 final size:22
Alignment explanation
Indices: 9963026--9963067 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
9963016 TTAATTAAAT
**
9963026 TAAACCTTAATTAACTTAATGC
1 TAAACCTTAATTAACCAAATGC
9963048 TAAA-CTTAATTAACCAAATG
1 TAAACCTTAATTAACCAAATG
9963068 TTAGTGGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (22 bp):
TAAACCTTAATTAACCAAATGC
Found at i:9969275 original size:5 final size:5
Alignment explanation
Indices: 9969265--9969295 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
9969255 AAAACTCTCC
9969265 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
9969296 TTATATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:9969471 original size:15 final size:15
Alignment explanation
Indices: 9969453--9969488 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9969443 GCAATAAAAA
9969453 TTCAGTACTTAAATT
1 TTCAGTACTTAAATT
* *
9969468 TTCAGCACTTAGATT
1 TTCAGTACTTAAATT
9969483 TTCAGT
1 TTCAGT
9969489 TTATCAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (15 bp):
TTCAGTACTTAAATT
Found at i:9980385 original size:22 final size:21
Alignment explanation
Indices: 9980357--9980398 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
9980347 TGAATGGGGA
*
9980357 AGTGGAAGGATGGAAAGAGTAG
1 AGTGGAAAGATGGAAA-AGTAG
9980379 AGTGGAAAGATGGAAAAGTA
1 AGTGGAAAGATGGAAAAGTA
9980399 ATAAATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.45, C:0.00, G:0.40, T:0.14
Consensus pattern (21 bp):
AGTGGAAAGATGGAAAAGTAG
Found at i:9981435 original size:16 final size:16
Alignment explanation
Indices: 9981402--9981435 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9981392 TCTGTTTGTT
* *
9981402 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
9981418 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
9981434 AA
1 AA
9981436 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:9984260 original size:21 final size:21
Alignment explanation
Indices: 9984234--9984274 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9984224 AGACGAGCAA
* *
9984234 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
9984255 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
9984275 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:9986211 original size:16 final size:16
Alignment explanation
Indices: 9986178--9986211 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9986168 GGAGATTGTT
* *
9986178 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
9986194 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
9986210 AA
1 AA
9986212 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:9996907 original size:18 final size:18
Alignment explanation
Indices: 9996880--9996925 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
9996870 GCCTACATAT
* *
9996880 ATGTGCGAACTATATGAA
1 ATGTGAGAACTACATGAA
*
9996898 ATGTGAGAACTACATGAT
1 ATGTGAGAACTACATGAA
*
9996916 ATGTGTGAAC
1 ATGTGAGAAC
9996926 CCATATACTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (18 bp):
ATGTGAGAACTACATGAA
Found at i:10005722 original size:14 final size:13
Alignment explanation
Indices: 10005703--10005740 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
10005693 ATTTGGTCCC
10005703 TTTTTATTTCTTTT
1 TTTTTATTT-TTTT
10005717 TTTTTA-TTTTTT
1 TTTTTATTTTTTT
*
10005729 TATTTATTTTTT
1 TTTTTATTTTTT
10005741 AATTAAATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 9 0.41
13 7 0.32
14 6 0.27
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTATTTTTTT
Found at i:10005741 original size:11 final size:11
Alignment explanation
Indices: 10005703--10005741 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
10005693 ATTTGGTCCC
*
10005703 TTTTTATTTCT
1 TTTTTATTTAT
10005714 TTTTT-TTTATT
1 TTTTTATTTA-T
10005725 TTTTTATTTAT
1 TTTTTATTTAT
10005736 TTTTTA
1 TTTTTA
10005742 ATTAAATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
10 3 0.12
11 18 0.72
12 4 0.16
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTATTTAT
Found at i:10025253 original size:17 final size:17
Alignment explanation
Indices: 10025227--10025276 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
10025217 CATGGGCTGG
10025227 CACATGGGCGTGTGGCT
1 CACATGGGCGTGTGGCT
*
10025244 CACATAGGCGTGTGGCT
1 CACATGGGCGTGTGGCT
*
10025261 CACACGGGCGTGTGGC
1 CACATGGGCGTGTGGC
10025277 CAGCCCATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.14, C:0.26, G:0.40, T:0.20
Consensus pattern (17 bp):
CACATGGGCGTGTGGCT
Found at i:10025359 original size:10 final size:11
Alignment explanation
Indices: 10025335--10025365 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
10025325 ATTTATCTGA
10025335 TTTTGGCTCGT
1 TTTTGGCTCGT
10025346 TTTTGGCTCGT
1 TTTTGGCTCGT
*
10025357 TTTTAGCTC
1 TTTTGGCTC
10025366 CTTTCACTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.03, C:0.19, G:0.23, T:0.55
Consensus pattern (11 bp):
TTTTGGCTCGT
Found at i:10028720 original size:6 final size:6
Alignment explanation
Indices: 10028704--10028759 Score: 85
Period size: 6 Copynumber: 9.2 Consensus size: 6
10028694 TGAAAATGAA
*
10028704 TCATTT CTCATTT TCATTT TCATTT TCATTT TCATTT TCATTT CCATTT
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
*
10028753 CCATTT T
1 TCATTT T
10028760 GAGAAAACCA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
6 41 0.87
7 6 0.13
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.62
Consensus pattern (6 bp):
TCATTT
Found at i:10028854 original size:19 final size:19
Alignment explanation
Indices: 10028826--10028864 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10028816 CTGCCTCTAG
10028826 AGTGTAAATACCGCAACTA
1 AGTGTAAATACCGCAACTA
* *
10028845 AGTGTGAATACTGCAACTA
1 AGTGTAAATACCGCAACTA
10028864 A
1 A
10028865 ATATATGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (19 bp):
AGTGTAAATACCGCAACTA
Found at i:10030810 original size:43 final size:43
Alignment explanation
Indices: 10030763--10030848 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
10030753 TATGTGATTG
*
10030763 ATATTGAAATGGAAAAGATGAAAAATGAATATGAGATGAGAAA
1 ATATTGAAATAGAAAAGATGAAAAATGAATATGAGATGAGAAA
* * *
10030806 ATATTGAAATAGAAAATATGATAAATGATTATGAGATGAGAAA
1 ATATTGAAATAGAAAAGATGAAAAATGAATATGAGATGAGAAA
10030849 TGAGATATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (43 bp):
ATATTGAAATAGAAAAGATGAAAAATGAATATGAGATGAGAAA
Found at i:10032211 original size:49 final size:49
Alignment explanation
Indices: 10032149--10032257 Score: 157
Period size: 49 Copynumber: 2.2 Consensus size: 49
10032139 TCTAACATTC
* ** *
10032149 TAGAAA-GGATAAATAATGATAAGATTGTAGACAGTGGAAGACTAAGTT
1 TAGAAATGTATAAATAATGATAAGAGAGTAGACAGTGGAAGACCAAGTT
* *
10032197 TAGCAATGTATAAATAGTGATAAGAGAGTAGACAGTGGAAGACCAAGTT
1 TAGAAATGTATAAATAATGATAAGAGAGTAGACAGTGGAAGACCAAGTT
10032246 TAGAAATGTATA
1 TAGAAATGTATA
10032258 GCATAATTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 5 0.09
49 48 0.91
ACGTcount: A:0.45, C:0.06, G:0.25, T:0.25
Consensus pattern (49 bp):
TAGAAATGTATAAATAATGATAAGAGAGTAGACAGTGGAAGACCAAGTT
Found at i:10040408 original size:22 final size:22
Alignment explanation
Indices: 10040383--10040429 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
10040373 TTCTTGTTAA
10040383 TTATATCACACTT-T-CTTCCATT
1 TTATAT-ACACTTCTGCTT-CATT
*
10040405 TTATGTACACTTCTGCTTCATT
1 TTATATACACTTCTGCTTCATT
10040427 TTA
1 TTA
10040430 ATTTCTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 6 0.27
22 13 0.59
23 3 0.14
ACGTcount: A:0.21, C:0.23, G:0.04, T:0.51
Consensus pattern (22 bp):
TTATATACACTTCTGCTTCATT
Done.